RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17798
(110 letters)
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 204 bits (521), Expect = 3e-66
Identities = 57/99 (57%), Positives = 80/99 (80%), Gaps = 2/99 (2%)
Query: 1 MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
M+ ++T +GNP SR+H +GW++E+AV+ AR +IA L+ DP+EI+FTSGATES+N+A
Sbjct: 42 MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 101
Query: 59 VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
+KG A FY++K KH+IT++TEHK VLD+CR LE EGF V
Sbjct: 102 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV 140
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 198 bits (505), Expect = 3e-64
Identities = 41/97 (42%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
MLPY+T ++GNP S H+YG+++ +AV++AR+++A L+N ++FTSGATE+NN+A+
Sbjct: 20 MLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78
Query: 61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
G A K KH++ + EH V++ + L+ +GF V
Sbjct: 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 197 bits (504), Expect = 4e-64
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
M+ + YGNP+S H G E+ +E AR+++A ++ P EI FTS ATES N +K
Sbjct: 21 MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79
Query: 61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
VA ++++K+ +ITT EHK VL++ + L +GF V
Sbjct: 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 181 bits (462), Expect = 3e-57
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
+ + A+GNP S ++ G +++ + AR +A +I P++IIFTSG TESNN+ +
Sbjct: 38 VTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIH 96
Query: 61 GVARFYKEK-----------------KKHVITTQTEHKCVLDSCRIL-EGEGFNV 97
R + E+ + H IT EH + L E + V
Sbjct: 97 STVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEV 151
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 64.9 bits (159), Expect = 6e-14
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
+ N A + + RQ +A N DP I T T +I
Sbjct: 36 ITAMYGYLQENGPFSIAANQHIQQ-LIAQLRQALAETFNVDPNTITITDNVTTGCDI--- 91
Query: 61 GVARFYKEKKK-HVITTQTEH 80
V + ++ T EH
Sbjct: 92 -VLWGLDWHQGDEILLTDCEH 111
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 63.0 bits (154), Expect = 3e-13
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVA 63
+ + H S ++ AR+ +A L+N DP ++ + ++ +A
Sbjct: 49 AFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSL----LA 103
Query: 64 RFYKEKKK---HVITTQTEH 80
+ VI ++ +
Sbjct: 104 EASSSRAGLGYEVIVSRLDD 123
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 57.5 bits (140), Expect = 2e-11
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLIN-CDPKEIIFTSGATESNNIAVKGV 62
Y N N H H + A E R ++A IN P+EI++T ATE+ N+
Sbjct: 51 YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSW 110
Query: 63 ARFYKEKKKHVITTQTEH 80
+ +ITT EH
Sbjct: 111 GMNNLKAGDEIITTVMEH 128
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 57.4 bits (139), Expect = 3e-11
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 1 MLPYLTNAYGNPHSRTHAY-GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAV 59
+L + T ++ + ++ + CD T+GA E+
Sbjct: 29 LLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFA-- 84
Query: 60 KGVARFYKEKKKHVITTQTEHK 81
V +K V+ + H
Sbjct: 85 --VMHSLAKKDAWVVMDENCHY 104
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 55.9 bits (136), Expect = 1e-10
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 4 YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGV 62
+ + Y H H ++ + +E+ R+ + IN +E++F G TE N+
Sbjct: 46 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 105
Query: 63 ARFYKEKKKHVITTQTEH 80
++I +Q EH
Sbjct: 106 GNSNVRAGDNIIISQMEH 123
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 40.9 bits (96), Expect = 2e-05
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 4 YLTNAYGNPHSRTHAY-GWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62
+ +GN R+ GW E +ATLI E++ T + N+ K +
Sbjct: 51 VIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSI--NLF-KVL 105
Query: 63 ARFYK------EKKKHVITTQTEH 80
+ + +++ ++T +
Sbjct: 106 SAALRVQATRSPERRVIVTETSNF 129
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 39.6 bits (92), Expect = 6e-05
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 17 HAYGWESE-KAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVIT 75
H G E + ++ + KEI + T + ++ + + ++ K ++
Sbjct: 102 HEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYK-ILL 160
Query: 76 TQTEH 80
Sbjct: 161 EAKAF 165
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 37.2 bits (87), Expect = 4e-04
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
R+ +A +P+ ++ TSGATE
Sbjct: 67 REALAEEFAVEPESVVVTSGATE 89
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 34.9 bits (80), Expect = 0.003
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 34 IATLINCDPKEII--FTSGATESNNIAVKGVARFYKEKKKH-----VITTQTEHKCVLDS 86
+ + N TSG TES +A A+ Y + +I T H +
Sbjct: 116 VLRMFNAPSDTGCGTTTSGGTESLLLACL-SAKMYALHHRGITEPEIIAPVTAHAGFDKA 174
Query: 87 CRILE 91
Sbjct: 175 AYYFG 179
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 34.9 bits (81), Expect = 0.003
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 31 RQEIATLINCDPKEIIFTSGATESNNIAVKGV 62
R +A I P+E++ T+G+ ++ ++ K
Sbjct: 80 RAFVAEWIGVRPEEVLITTGSQQALDLVGKVF 111
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 34.1 bits (78), Expect = 0.005
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 34 IATLINCDPKEI----IFTSGATESNNIAVKGVARFYKEKKKH-----VITTQTEHKCVL 84
A ++ D TSG TES +A+K R + K + + H
Sbjct: 148 TAHMLGGDAAGGTVCGTVTSGGTESLLLAMK-TYRDWARATKGITAPEAVVPVSAHAAFD 206
Query: 85 DSCRILE 91
+ +
Sbjct: 207 KAAQYFG 213
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 32.4 bits (74), Expect = 0.020
Identities = 6/60 (10%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 31 RQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVL 84
+ N + I T+G+ + + + +++ K +L
Sbjct: 89 IDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSIL 148
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 32.1 bits (74), Expect = 0.022
Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 31 RQEIATLI-NCDPKEIIFTSGATESNNIA 58
++ ++ L P++I+ T+GAT +N +
Sbjct: 69 KKSVSQLYTGVKPEQILQTNGATGANLLV 97
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 31.6 bits (71), Expect = 0.038
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 46 IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRIL 90
I T +T + AR K VI HK + + +
Sbjct: 153 IATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV 196
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 31.4 bits (72), Expect = 0.040
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEKKK 71
H + S+ E A +A + SG +E+ AVK +AR Y + +
Sbjct: 65 HGSQFSSDVLEEYA-GRLARFVGLPTFRFWAVSGGSEATESAVK-LARQYHVERGEPGRF 122
Query: 72 HVI 74
VI
Sbjct: 123 KVI 125
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 30.3 bits (69), Expect = 0.090
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEKKK 71
+ + A A ++IATL D I FT+G + + + A++ + FY + +KK
Sbjct: 90 SPWYMATSPAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALR-FSEFYNNVLGRPQKK 147
Query: 72 HVIT 75
+I
Sbjct: 148 RIIV 151
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 30.1 bits (68), Expect = 0.095
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 12 PHSRTHAYGWESEKAVEDARQEIAT-------LINCDPKEIIFTSGATESNNIAVKGVAR 64
+ +Y + + V R+++A + DP I T+GA++ + +K +
Sbjct: 118 GGNSLGSYS--ASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS 175
Query: 65 FYKEKKKHVIT 75
+ + V+
Sbjct: 176 GGGKSRTGVMI 186
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 30.0 bits (67), Expect = 0.13
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 47 FTSGATESNNIAVKGVARFYKEKKKH---------VITTQTEHKCVLDSCRILEGE 93
T G++E+ +A R ++ K+K ++T C R E E
Sbjct: 122 GTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVE 177
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 29.8 bits (68), Expect = 0.15
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 16 THAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFY-----KEKK 70
+ + + + + A ++I L + + FT +E AVK + R Y + K
Sbjct: 85 SPGFQYGHPLSFQLA-EKITDLTPGNLNHVFFTDSGSECALTAVK-MVRAYWRLKGQATK 142
Query: 71 KHVIT 75
+I
Sbjct: 143 TKMIG 147
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 29.4 bits (66), Expect = 0.18
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 12/44 (27%)
Query: 16 THAYGWESEKAVEDARQEIATLI------NCDPKEIIFTSGATE 53
+H+ G + R IA+ I + +I T GA+
Sbjct: 131 SHSQG------IHGLRDAIASGIASRDGFPANADDIFLTDGASP 168
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 29.2 bits (66), Expect = 0.22
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 34 IATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH----------VITTQTEHKCV 83
+ +L+N SG TE+N +A++ + +K+ +I T H
Sbjct: 78 LGSLLNNKDAYGHIVSGGTEANLMALR-CIKNIWREKRRKGLSKNEHPKIIVPITAHFSF 136
Query: 84 LDSCRILE 91
+++
Sbjct: 137 EKGREMMD 144
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 29.0 bits (66), Expect = 0.23
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
Q +A I+ +G TE
Sbjct: 65 HQALARHHQVPASWILAGNGETE 87
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 29.0 bits (66), Expect = 0.23
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
+ I + I+ +GA+E
Sbjct: 67 NKSIENYLKLKDIGIVLGNGASE 89
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 29.2 bits (66), Expect = 0.24
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 6/30 (20%)
Query: 31 RQEIATL------INCDPKEIIFTSGATES 54
+ L + + T+GA E
Sbjct: 101 INSLIKLYSPIYNTELKAENVTVTTGANEG 130
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 29.0 bits (66), Expect = 0.26
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
RQ +A + D I+ T+G T
Sbjct: 56 RQMLAKRNSVDNNAILVTNGPTA 78
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 29.1 bits (66), Expect = 0.27
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 47 FTSGATESNNIAVKGVARFY-----KEKKKHVIT 75
+T+ +E+N+ VK + F K +K+ ++T
Sbjct: 127 YTNSGSEANDTMVK-MLWFLHAAEGKPQKRKILT 159
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 29.1 bits (66), Expect = 0.29
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 29 DARQEIATLIN------CDPKEIIFTSGATESNNIAVK 60
+ R IA +N + + T GA S +I +
Sbjct: 80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFR 117
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 28.8 bits (65), Expect = 0.31
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 31 RQEIATL------INCDPKEIIFTSGATESNNIAVK 60
+A L + +P+ I T+G+ +
Sbjct: 81 LNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFN 116
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 28.8 bits (65), Expect = 0.34
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 31 RQEIATLINC--------DPKEIIFTSGATESNNIA 58
++ + + DP ++ T+GAT +N
Sbjct: 92 KKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETF 127
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 28.5 bits (64), Expect = 0.42
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 30 ARQEIATLINCDPKEIIFTSGA 51
R+ A + ++ G+
Sbjct: 81 IRELWAEALGLPADLVVAQDGS 102
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 28.1 bits (63), Expect = 0.55
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 31 RQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVI 74
+QE + I+ + + T G+ + ++ R +K ++ +
Sbjct: 88 KQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTL 137
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 27.9 bits (63), Expect = 0.64
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 47 FTSGATESNNIAVKGVARFY-----KEKKKHVIT 75
F++ +E+N A K +AR Y + + ++
Sbjct: 112 FSNSGSEANETAFK-IARQYYAQKGEPHRYKFMS 144
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 27.9 bits (63), Expect = 0.72
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 47 FTSGATESNNIAVKGVARFY-----KEKKKHVIT 75
F +++N +K + +Y + +KK +I+
Sbjct: 117 FGLSGSDANETNIK-LIWYYNNVLGRPEKKKIIS 149
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 27.6 bits (61), Expect = 0.73
Identities = 5/53 (9%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 47 FTSGATESNNIAVKGVARFYKEKKKH--------VITTQTEHKCVLDSCRILE 91
T G++E+ + + ++++ + + C R +
Sbjct: 108 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWD 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.73
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 17/76 (22%)
Query: 21 WE--SEKAVEDARQEIA--TLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITT 76
W + V ++ +L+ PKE + + + Y E K +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----------IPSI---YLELKVKLENE 442
Query: 77 QTEHKCVLDSCRILEG 92
H+ ++D I +
Sbjct: 443 YALHRSIVDHYNIPKT 458
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.8 bits (63), Expect = 0.75
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 27 VEDARQEIATLINCDPKEIIFTSGAT 52
V+ +++I ++ DP+E I S
Sbjct: 142 VDRVKKQIEEVLGLDPEEAILASAKE 167
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 27.6 bits (62), Expect = 0.80
Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 31 RQEIATL-----INCDPKEIIFTSGATESNNIAVK 60
R+ + +I+ TSG+ ++ ++ +
Sbjct: 124 RETLMKWLGKRYGISQDNDIMITSGSQQALDLIGR 158
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 27.5 bits (62), Expect = 0.87
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 31 RQEIATL------INCDP-KEIIFTSGATESNNIAVKGV 62
R+ IA D +I T+GATE+ A+ +
Sbjct: 73 REAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL 111
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 27.6 bits (62), Expect = 0.88
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 2 LPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKG 61
LP+ + H VE + +A + + +T+ +ES + ++
Sbjct: 82 LPFYNTFFKTTH----------PAVVELS-SLLAEVTPAGFDRVFYTNSGSESVDTMIR- 129
Query: 62 VARFY-----KEKKKHVIT 75
+ R Y K +KK +I
Sbjct: 130 MVRRYWDVQGKPEKKTLIG 148
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.4 bits (62), Expect = 0.90
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 27 VEDARQEIATLINCDPKEIIFTSGAT 52
E +EI ++ D + + S T
Sbjct: 140 PERVAEEIEDIVGIDATDAVRCSAKT 165
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 27.7 bits (62), Expect = 0.91
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 31 RQEIATLINC--------DPKEIIFTSGATESNNIA 58
R+ IA + DP+ ++ GAT +N
Sbjct: 89 RKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETI 124
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 27.6 bits (62), Expect = 0.94
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 31 RQEIATL------INCDP-KEIIFTSGATESNNIAVKGV 62
R+ IA ++ DP E++ T GATE+ AV G+
Sbjct: 68 RRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL 106
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 27.2 bits (61), Expect = 0.95
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 31 RQEIATL------INCDPKEIIFTSGATE 53
R+E+A + P+ I+ T G T
Sbjct: 81 REELAAFLKKYDHLEVSPENIVITIGGTG 109
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 26.6 bits (59), Expect = 1.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 29 DARQEIATLINCDPKEIIFTSGA 51
D RQ A L+ ++++ +
Sbjct: 82 DIRQIWADLLGVPVEQVLAGDAS 104
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 26.8 bits (59), Expect = 1.8
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 31 RQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITT 76
I L + + I+ +G+T+ AV ++ + + V+
Sbjct: 74 EDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAA 125
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 26.5 bits (59), Expect = 2.0
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 31 RQEIATL------INCDP-KEIIFTSGATESNNIAVKGV 62
Q ++ L +P E++ T GA E+ ++G
Sbjct: 83 VQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH 121
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 26.5 bits (59), Expect = 2.1
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 31 RQEIATL------INCDP-KEIIFTSGATESNNIAVKGV 62
+ +A+ DP + ++ T G + A + +
Sbjct: 73 TKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL 111
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 31 RQEIATL------INCDP-KEIIFTSGATESNNIAVKGV 62
+ ++ L DP +EI+ GA S +++G+
Sbjct: 67 VKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL 105
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 26.4 bits (59), Expect = 2.3
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 41 DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVIT 75
+ S ESN A++ +A+ K ++
Sbjct: 101 GLDRALLLSTGAESNEAAIR-MAKLVT-GKYEIVG 133
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 26.2 bits (58), Expect = 2.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 46 IFTSGATESNNIAVKGVAR--FYKEKKKH---------VITTQTEHKCVLDSCRIL 90
IF G + SN AV +AR Y + K+ + T++ H + L
Sbjct: 169 IFCPGGSISNMYAVN-LARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 223
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural
genomics, PSI, protein structure initiative; 2.14A
{Caenorhabditis elegans}
Length = 199
Score = 25.9 bits (57), Expect = 2.7
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 54 SNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
++ + K+ + ++ H CVL + L G NV
Sbjct: 86 KFSMCIPPTEDTLKKVQNVILVGIEAHVCVLQTTYDLLERGLNV 129
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 26.2 bits (58), Expect = 3.0
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 46 IFTSGATESNNIAVKGVAR--FYKEKKKH---------VITTQTEHKCVLDSCRIL 90
IF+ G SN ++ AR ++ E K + T++ H + + L
Sbjct: 155 IFSPGGAISNMYSIM-AARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 209
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 25.7 bits (57), Expect = 4.3
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 14 SRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHV 73
+R E VE R+ + ++ ++I + + SN A K + K+
Sbjct: 99 NRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFK-TIFMWYRSKERG 157
Query: 74 ITTQTEHKCVLDSCRILEGEG 94
+ ++ + G
Sbjct: 158 QSAFSKEELETCMINQAPGCP 178
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 25.3 bits (55), Expect = 5.0
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 31 RQEIATL------INCDPKEIIFTSGATESNNIAV 59
+ I L + I+F G T+ + V
Sbjct: 106 EKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLV 140
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 25.2 bits (56), Expect = 5.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 31 RQEIATL------INCDPKEIIFTSGATES 54
R++I+ L + P II T G++
Sbjct: 72 REKISELYKDKYKADIIPDNIIITGGSSLG 101
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function;
HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP:
c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Length = 211
Score = 24.9 bits (55), Expect = 5.9
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 18 AYGWESEKAVEDARQEIATLINCDPKEIIF 47
YG + EK VE + + KE+
Sbjct: 153 IYGCDLEKVVETFLEAVKNFKGSAVKEVAL 182
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET:
LLP MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 24.8 bits (55), Expect = 6.3
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
+ +A + II +G+ +
Sbjct: 71 KSTLAQKYKVQNENIIIGAGSDQ 93
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 25.0 bits (55), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 46 IFTSGATESNNIAVKGVARFYKEKK 70
IFTSG T+SN + + +AR + K
Sbjct: 162 IFTSGGTQSNQMGLM-LARDWIADK 185
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 24.8 bits (55), Expect = 6.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 RQEIATLINCDPKEIIFTSGATE 53
R+E+A + +E+IFT+G E
Sbjct: 73 RKEVADFYQLEEEELIFTAGVDE 95
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 31 RQEIAT-------LINCDPKEIIFTSGATESNNIAVK 60
+Q+I + D +IFT G+ ++ ++ K
Sbjct: 91 KQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGK 127
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 24.9 bits (54), Expect = 7.4
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 10 GNPH-SRTHAYGWESEKAVEDARQEIATLINCDP 42
+P + G+ES + + + DP
Sbjct: 217 SDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDP 250
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA
tandem repeat, transcription/DNA complex; HET: DNA;
2.40A {Bacillus stearothermophilus}
Length = 155
Score = 24.6 bits (54), Expect = 7.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 22 ESEKAVEDARQEIATLINCDPKEI 45
+ VE R EIA C P +I
Sbjct: 18 SDQDIVEIKRSEIANKFRCVPSQI 41
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 24.6 bits (54), Expect = 7.9
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGV 62
E K + D T G T++ A+ G
Sbjct: 309 EGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGK 349
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 24.4 bits (53), Expect = 9.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWE 22
L +L+ H GWE
Sbjct: 440 WLGWLSGETEAAHDENTVTGWE 461
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Length = 530
Score = 24.6 bits (53), Expect = 9.9
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 28 EDARQEIATLINCDPKEIIFTSGATESNNI 57
+ +A +N DP + F +
Sbjct: 266 FQVAKTVAQRLNTDPMLLQFFKSQGYRDGP 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,646,875
Number of extensions: 83443
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 75
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.2 bits)