RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17798
(110 letters)
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 112 bits (280), Expect = 1e-31
Identities = 59/108 (54%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 1 MLPYLT--NAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIA 58
M+ ++T +GNP SR+H +GW++E+AV+ AR +IA L+ DP+EI+FTSGATES+N+A
Sbjct: 22 MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLA 81
Query: 59 VKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
+KG A FY++K KH+IT++TEHK VLD+CR LE EGF V P + G
Sbjct: 82 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 129
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 96.3 bits (238), Expect = 1e-25
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
M+ + YGNP+S H G E+ +E AR+++A ++ P EI FTS ATES N +K
Sbjct: 21 MIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK 79
Query: 61 GVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
VA ++++K+ +ITT EHK VL++ + L +GF V
Sbjct: 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKV 116
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 87.7 bits (216), Expect = 2e-22
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKE-IIFTSGATESNNIAV 59
+ + Y H H ++ + +E+ R+ + IN E ++F G TE N+
Sbjct: 42 EAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA 101
Query: 60 KGVARFYKEKKKHVITTQTEHKCVLDSCRIL-EGEGFNV 97
++I +Q EH + ++L G +
Sbjct: 102 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL 140
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 78.1 bits (191), Expect = 5e-19
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEI-IFTSGATESNNIAV 59
++ Y N N H H + A E R ++A IN ++T ATE+ N+
Sbjct: 42 LMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 101
Query: 60 KGVARFYKEKKKHVITTQTEHKCVLDSC 87
+ +ITT EH L
Sbjct: 102 YSWGMNNLKAGDEIITTVMEHHSNLVPW 129
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 382
Score = 67.4 bits (163), Expect = 4e-15
Identities = 4/73 (5%), Positives = 19/73 (26%)
Query: 8 AYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYK 67
+ + + ++ +++ R + + + T +I
Sbjct: 23 DVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA 82
Query: 68 EKKKHVITTQTEH 80
K ++ +
Sbjct: 83 PNKNVLVVSTGTF 95
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 66.5 bits (160), Expect = 8e-15
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
+ N + A ++ + RQ +A N DP I T T +I +
Sbjct: 27 ITAMYGYLQENGP-FSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW 85
Query: 61 GVARFYKEKKKHVITTQTEHKCV 83
+ ++ T EH +
Sbjct: 86 ---GLDWHQGDEILLTDCEHPGI 105
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 61.1 bits (146), Expect = 6e-13
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH 72
+ T G+ + A + I L+ ++ F SG T++N IA R ++
Sbjct: 23 DNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIAT 82
Query: 73 VITTQTEHKC 82
+ + H+
Sbjct: 83 QLGHISTHET 92
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 52.8 bits (125), Expect = 5e-10
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 1 MLPYLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVK 60
+ +GN R+ E +ATLI E++ T + + +
Sbjct: 47 AQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLS 105
Query: 61 GVARFYKEKKKHVITTQTEHKC 82
R + TE
Sbjct: 106 AALRVQATRSPERRVIVTETSN 127
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 50.2 bits (118), Expect = 4e-09
Identities = 7/77 (9%), Positives = 19/77 (24%), Gaps = 5/77 (6%)
Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKE--IIFTSGATESNNIAVKGVARFYKEKK 70
+ VE RQ++ L ++ + + +
Sbjct: 21 FDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQ---D 77
Query: 71 KHVITTQTEHKCVLDSC 87
K +I + + +
Sbjct: 78 KVLIVSNGAYGARMVEM 94
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 48.5 bits (114), Expect = 2e-08
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81
E A + A + N D + F G + + N V V+ + HK
Sbjct: 63 IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117
Query: 82 CVLDSCRILEGEGFNVL 98
V +S + G L
Sbjct: 118 SVYNSALAMAGGRPVYL 134
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 47.5 bits (111), Expect = 4e-08
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 13 HSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKH 72
HS A + +++ +++ + D E+ T +N + + + + H
Sbjct: 26 HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMTPPWGNIYCH 84
Query: 73 VITTQTEHKCVLDSCRILEGEGFNVLGSNPGQG 105
H + L + G
Sbjct: 85 ----PASHINNDECGAPEFFSNGAKLMTVDGPA 113
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 41.2 bits (95), Expect = 5e-06
Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 2/73 (2%)
Query: 11 NPHSRTHAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEK 69
N H +++ + + + +P I + T + +
Sbjct: 38 NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 96
Query: 70 KKHVITTQTEHKC 82
V
Sbjct: 97 LIGVAGYFGNRLV 109
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 41.2 bits (95), Expect = 6e-06
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 17 HAYGWESEKAVEDARQEIATLINCDPKEIIFTSG-ATESNNIAVKGVARFYKEKKKHVIT 75
+ E + +++ + + + + + + SG A + + + +
Sbjct: 42 SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGD-RVLIAVN 100
Query: 76 TQTEHKCVLDSCR 88
+ V S R
Sbjct: 101 GIWAERAVEMSER 113
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 37.6 bits (86), Expect = 1e-04
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 46 IFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKCVLDSCRILEGEGFNV 97
AT + R + K K++I + + K S E +
Sbjct: 116 FVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVI 167
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 36.2 bits (82), Expect = 3e-04
Identities = 4/72 (5%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 17 HAYGWESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVIT 75
+ + + +++ ++ I + +P ++ + + A+ E +
Sbjct: 44 GSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAAL----VNVLEPGDSFLV 99
Query: 76 TQTEHKCVLDSC 87
Sbjct: 100 GANGIWGQRAVD 111
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 33.3 bits (75), Expect = 0.004
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 46 IFTSGATESNNIAVKGVARFYKEKKKH--------VITTQTEHKCVLDSCRILEGEGFNV 97
T G++E+ + + ++++ + + C R + E +
Sbjct: 119 TNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREI 178
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Bacillus alcalophilus [TaxId: 1445]}
Length = 360
Score = 32.7 bits (73), Expect = 0.005
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 22 ESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80
E+ E A+ + L+ + +I+F G + +V+T
Sbjct: 45 SYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSE 104
Query: 81 KCVLDSCRI 89
K + ++ +
Sbjct: 105 KALKEAKLL 113
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 32.5 bits (72), Expect = 0.007
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 1 MLPYLTNAYGNPHSRTHAYGW-ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAV 59
+L + T ++ + ++ + CD T+GA E+ +
Sbjct: 22 LLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVM 79
Query: 60 KGVARFYKEKKKHVITTQTEHKCVLDSC 87
+A+ + + +
Sbjct: 80 HSLAKKDAWVVMDENCHYSSYVAAERAG 107
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 31.6 bits (70), Expect = 0.014
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 22 ESEKAVEDARQEIATLINC-DPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEH 80
E +A+ + L+ +++F G + + + +V+T
Sbjct: 45 VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWAS 104
Query: 81 KC 82
K
Sbjct: 105 KA 106
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 31.1 bits (69), Expect = 0.018
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 22 ESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81
+ + AR + + + +I T T A++ + + + V+
Sbjct: 30 AAREVFLKARGLLREAFRTEGEVLILTGSGTL----AMEALVKNLFAPGERVLVPVYGKF 85
Query: 82 C 82
Sbjct: 86 S 86
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Length = 431
Score = 30.0 bits (66), Expect = 0.054
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 31 RQEIATL--------INCDPKEIIFTSGATESNNIAVKGVARFYKE 68
++ + + DP ++ T+GAT +N + +A +
Sbjct: 90 KKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEA 135
>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId:
4081]}
Length = 428
Score = 28.4 bits (62), Expect = 0.17
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 12/70 (17%)
Query: 31 RQEIATL--------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHKC 82
R+ IA + DP+ ++ GAT +N + + +
Sbjct: 89 RKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETI----IFCLADPGDAFLVPSPYYPA 144
Query: 83 VLDSCRILEG 92
R G
Sbjct: 145 FNRDLRWRTG 154
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.7 bits (61), Expect = 0.26
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 29 DARQEIATL------INCDPKEIIFTSGATESNNIAVKGVA----RFYKEKKKHVITTQT 78
+ + I L + I+F G T+ + V ++ + V+
Sbjct: 104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163
Query: 79 EHKCVLDSCRILEGEGFNV 97
+ + + + +G+
Sbjct: 164 FYPVFREQTKYFDKKGYVW 182
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 158
Score = 26.1 bits (56), Expect = 0.92
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 28 EDARQEIATLINCDPKEIIFTSGATESNNIAV 59
E A L + I G +S N++V
Sbjct: 112 EHEGLRAAWLEAAQTQVRIPMQGQADSLNVSV 143
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 192
Score = 25.9 bits (56), Expect = 1.1
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 16 THAYGWESEKAVEDARQEIATLINCDPKEIIF 47
YG + EK VE + + KE+
Sbjct: 142 AGIYGCDLEKVVETFLEAVKNFKGSAVKEVAL 173
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 25.2 bits (53), Expect = 2.2
Identities = 5/62 (8%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 28 EDARQEIATL------INCDPKEIIFTSGATESNNIAVKGVARFYKEKKKHVITTQTEHK 81
++ IA D + +++ + ++ + + H +K
Sbjct: 38 DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYK 97
Query: 82 CV 83
+
Sbjct: 98 AI 99
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 24.5 bits (52), Expect = 4.1
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 6 TNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEIIFTSGATESNNIAVKGVARF 65
NA + E V ++IA +I + +I + ++
Sbjct: 10 GNALQQRGQKGSYE--EMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL----LHM 63
Query: 66 YKEKKKHVITTQTEHKCVLDSCRILEGEGFNVLGSNPGQGG 106
+ + I Q S + L + + G
Sbjct: 64 DAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRG 104
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
{Prochlorococcus marinus [TaxId: 1219]}
Length = 222
Score = 23.6 bits (51), Expect = 7.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 2 LP-YLTNAYGNPHSRTHAYGWESEKAVEDARQEIATLINCDPKEII 46
LP + ++ Y + +SR +A E E+ D I TL+ +E+
Sbjct: 3 LPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELK 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.396
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,531
Number of extensions: 15990
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 28
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.6 bits)