BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy178
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 43.1 bits (100), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 130 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPW 178
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 154 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPW 202
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 168 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPW 216
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 124 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPW 172
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 131 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPW 179
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 150 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPW 198
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 20 KGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
+G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 168 EGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPW 216
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 10 LSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELC--------TSWETTNYIT 61
++ + G+L L+G + +DA +V+ LR+AGA+ L TN+ E + W
Sbjct: 94 MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARG--- 149
Query: 62 GKTVNPYDFSRTPGGSSGGEVL 83
G+T NPY S +P GSS G +
Sbjct: 150 GQTRNPYRISHSPCGSSSGSAV 171
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 26 EDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGGEVL 83
E+A V+ LREAGA+ TN E+ N TG N D SR GGSSGG +
Sbjct: 96 EEARAVRRLREAGALLFAKTNXHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAV 153
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 11 SNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDF 70
+++ +K G +A DA V+ +R AG + L TN PE+ T G T NP++
Sbjct: 84 TSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNL 143
Query: 71 SR 72
R
Sbjct: 144 GR 145
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 11 SNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDF 70
+++ +K G +A DA V+ +R AG + L TN PE+ T G T NP++
Sbjct: 84 TSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNL 143
Query: 71 SR 72
R
Sbjct: 144 GR 145
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 5 VFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKT 64
+ V+G + L+ A DA +++ L++AGA+ + TN+ E T T
Sbjct: 75 ILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPT 134
Query: 65 VNPYDFSRTP 74
NP+D R P
Sbjct: 135 KNPWDLERVP 144
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 9 GLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
G+ + L+ ++ DA +VK ++EAG + + N+ E T T NP+
Sbjct: 73 GMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPW 132
Query: 69 DFSRTP 74
D R P
Sbjct: 133 DLERVP 138
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTP 74
DA +VK +EAG + + N+ E T T NP+D R P
Sbjct: 92 DATVVKKXKEAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVP 139
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 5 VFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKT 64
V V G+ G+ ++G S DA +V L AGA +LC S + +G
Sbjct: 99 VTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPV 158
Query: 65 VNPYDFSR 72
NP+D R
Sbjct: 159 RNPWDRQR 166
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 5 VFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKT 64
V V G+ G+ ++G S DA +V L AGA +LC S + +G
Sbjct: 99 VTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPV 158
Query: 65 VNPYDFSR 72
NP+D R
Sbjct: 159 RNPWDRQR 166
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 5 VFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKT 64
+ +GL + L+G ++ +++ L + A+ + N+ E T KT
Sbjct: 82 IITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKT 141
Query: 65 VNPYDFSRTP 74
VNP+D P
Sbjct: 142 VNPFDHKAVP 151
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 9 GLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
GL G+ L+ +A V L+ GA+ L TN+ E T + T NP+
Sbjct: 73 GLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPF 132
Query: 69 DFSRTP 74
D R P
Sbjct: 133 DPDRVP 138
>pdb|1UF3|A Chain A, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|B Chain B, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|C Chain C, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|D Chain D, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|E Chain E, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|F Chain F, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|G Chain G, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
pdb|1UF3|H Chain H, Crystal Structure Of Tt1561 Of Thermus Thermophilus Hb8
Length = 228
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 26 EDAPIVKILREAGAIPLCN---TNVPELCTSWETTNYITG 62
+DAPI + LREA + L + NV E T W + G
Sbjct: 73 QDAPIWEYLREAANVELVHPEXRNVHETFTFWRGPYLVAG 112
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 1 MGGMVFVDGLSNATGALKLKGRKASEDA-----PIVKILREAGAI 40
M M + L ATGA + ++A EDA V++LRE GA+
Sbjct: 1 MSQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAM 45
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 15 GALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTP 74
G+ +G + DAP+V +L+ AGA + T + T T+NP++ +P
Sbjct: 75 GSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTA------TLNPHNTGHSP 128
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 15 GALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTP 74
G+ +G + DAP+V +L+ AGA + T + T T+NP++ +P
Sbjct: 75 GSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTA------TLNPHNTGHSP 128
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELCT 52
DA +V LR AGAI L TN+ + T
Sbjct: 127 DATVVARLRAAGAIVLGKTNLDQFAT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,925,703
Number of Sequences: 62578
Number of extensions: 107222
Number of successful extensions: 161
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 34
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)