Query psy178
Match_columns 84
No_of_seqs 179 out of 1164
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 23:23:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 3.8E-35 8.3E-40 217.0 6.9 84 1-84 81-164 (475)
2 PRK07869 amidase; Provisional 100.0 2.1E-34 4.6E-39 212.0 6.5 84 1-84 81-164 (468)
3 PRK07042 amidase; Provisional 100.0 3.5E-34 7.6E-39 210.7 6.4 84 1-84 79-162 (464)
4 PRK07487 amidase; Provisional 100.0 4.3E-34 9.3E-39 210.6 6.1 84 1-84 80-163 (469)
5 PRK05962 amidase; Validated 100.0 4.7E-34 1E-38 208.3 6.2 84 1-84 53-137 (424)
6 PRK00012 gatA aspartyl/glutamy 100.0 6.2E-34 1.3E-38 209.0 6.4 84 1-84 63-146 (459)
7 PRK06170 amidase; Provisional 100.0 7.8E-34 1.7E-38 209.9 6.8 84 1-84 83-166 (490)
8 PRK07486 amidase; Provisional 100.0 7E-34 1.5E-38 210.0 6.4 84 1-84 85-168 (484)
9 TIGR00132 gatA glutamyl-tRNA(G 100.0 7.4E-34 1.6E-38 208.6 6.4 84 1-84 63-146 (460)
10 TIGR02715 amido_AtzE amidohydr 100.0 7.1E-34 1.5E-38 208.6 6.2 84 1-84 72-156 (452)
11 PRK06529 amidase; Provisional 100.0 9E-34 1.9E-38 209.4 6.6 84 1-84 70-154 (482)
12 PRK07139 amidase; Provisional 100.0 8.4E-34 1.8E-38 207.9 6.2 84 1-84 44-127 (439)
13 PRK07235 amidase; Provisional 100.0 1.3E-33 2.9E-38 209.7 6.7 84 1-84 95-178 (502)
14 PRK07488 indole acetimide hydr 100.0 1.1E-33 2.4E-38 208.4 6.1 84 1-84 81-164 (472)
15 PRK09201 amidase; Provisional 100.0 1.2E-33 2.5E-38 208.1 5.9 84 1-84 79-163 (465)
16 PF01425 Amidase: Amidase; In 100.0 5.2E-34 1.1E-38 203.3 3.9 84 1-84 55-138 (441)
17 PRK08310 amidase; Provisional 100.0 1.9E-33 4.1E-38 203.7 6.5 84 1-84 33-118 (395)
18 PRK06169 putative amidase; Pro 100.0 3.1E-33 6.8E-38 205.8 6.5 84 1-84 79-163 (466)
19 PLN02722 indole-3-acetamide am 100.0 3.3E-33 7.1E-38 204.2 6.1 83 1-83 34-118 (422)
20 PRK06102 hypothetical protein; 100.0 3.8E-33 8.2E-38 204.9 6.2 84 1-84 77-163 (452)
21 PRK12470 amidase; Provisional 100.0 5.8E-33 1.3E-37 204.4 6.8 82 1-83 80-161 (462)
22 TIGR02713 allophanate_hyd allo 100.0 7.2E-33 1.6E-37 208.1 6.4 83 1-84 39-121 (561)
23 PRK08186 allophanate hydrolase 100.0 8.1E-33 1.7E-37 209.1 6.5 83 1-84 76-158 (600)
24 PRK08137 amidase; Provisional 100.0 1.1E-32 2.4E-37 204.2 6.1 84 1-84 80-169 (497)
25 PRK07056 amidase; Provisional 100.0 1.4E-32 3.1E-37 201.9 6.1 84 1-84 79-167 (454)
26 PRK06061 amidase; Provisional 100.0 4.4E-32 9.5E-37 200.6 6.8 83 1-84 89-171 (483)
27 PRK11910 amidase; Provisional 100.0 4.2E-31 9.2E-36 199.9 7.0 84 1-84 237-325 (615)
28 PRK06828 amidase; Provisional 100.0 3.3E-31 7.1E-36 196.7 5.8 84 1-84 87-179 (491)
29 PRK06707 amidase; Provisional 100.0 1.6E-30 3.4E-35 194.8 6.8 83 1-83 144-233 (536)
30 PRK06565 amidase; Validated 100.0 5.6E-30 1.2E-34 192.4 6.3 83 1-84 83-169 (566)
31 KOG1211|consensus 99.9 3.1E-28 6.7E-33 180.5 4.6 83 1-83 89-172 (506)
32 KOG1212|consensus 99.9 2.3E-24 5.1E-29 161.3 4.5 84 1-84 127-210 (560)
33 TIGR01698 PUNP purine nucleoti 65.9 8.1 0.00018 26.9 3.0 40 14-53 148-187 (237)
34 COG0005 Pnp Purine nucleoside 47.1 23 0.0005 25.1 2.8 40 14-53 172-211 (262)
35 PRK07823 5'-methylthioadenosin 47.1 19 0.0004 25.5 2.3 31 23-53 159-189 (264)
36 PRK07432 5'-methylthioadenosin 43.1 21 0.00045 25.6 2.1 38 15-52 159-196 (290)
37 PRK08931 5'-methylthioadenosin 40.2 26 0.00057 25.1 2.2 30 23-52 164-193 (289)
38 PRK08564 5'-methylthioadenosin 37.2 31 0.00067 24.3 2.2 38 15-52 160-198 (267)
39 PLN00105 malate/L-lactate dehy 36.6 83 0.0018 22.9 4.4 41 27-69 110-150 (330)
40 COG0761 lytB 4-Hydroxy-3-methy 36.6 34 0.00074 24.7 2.3 26 18-43 34-59 (294)
41 PF05240 APOBEC_C: APOBEC-like 33.9 10 0.00022 20.7 -0.5 39 30-69 7-45 (55)
42 PF06591 Phage_T4_Ndd: T4-like 33.8 45 0.00098 21.8 2.4 23 31-53 6-28 (152)
43 COG0461 PyrE Orotate phosphori 31.3 43 0.00093 22.8 2.1 17 29-45 130-146 (201)
44 PF13606 Ank_3: Ankyrin repeat 30.9 45 0.00097 15.2 1.6 16 26-41 13-28 (30)
45 PF00023 Ank: Ankyrin repeat H 29.3 40 0.00086 15.3 1.2 18 27-44 14-31 (33)
46 TIGR03175 AllD ureidoglycolate 29.3 1.3E+02 0.0029 22.1 4.4 26 27-52 120-145 (349)
47 PRK13260 2,3-diketo-L-gulonate 29.1 1.3E+02 0.0028 21.9 4.4 26 27-52 120-145 (332)
48 PF00289 CPSase_L_chain: Carba 28.9 35 0.00077 20.7 1.3 22 24-45 85-106 (110)
49 PF03537 Glyco_hydro_114: Glyc 28.8 83 0.0018 17.6 2.7 25 26-50 37-61 (74)
50 COG3010 NanE Putative N-acetyl 28.7 77 0.0017 22.1 3.0 37 15-51 157-195 (229)
51 KOG0848|consensus 27.6 85 0.0018 22.8 3.1 55 25-81 48-102 (317)
52 PRK10098 putative dehydrogenas 27.1 1.5E+02 0.0032 21.8 4.4 22 27-48 124-145 (350)
53 PF14468 DUF4427: Protein of u 26.7 72 0.0016 20.3 2.4 23 23-45 42-64 (132)
54 COG0141 HisD Histidinol dehydr 26.3 52 0.0011 25.0 1.9 33 28-60 330-362 (425)
55 PRK13812 orotate phosphoribosy 25.9 61 0.0013 21.2 2.1 33 28-65 4-36 (176)
56 cd01847 Triacylglycerol_lipase 24.5 1.1E+02 0.0024 20.9 3.3 26 29-54 145-170 (281)
57 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.0 1E+02 0.0023 18.1 2.7 25 29-53 64-88 (126)
58 COG2721 UxaA Altronate dehydra 23.3 1.6E+02 0.0035 22.2 3.9 43 2-46 259-301 (381)
59 TIGR01699 XAPA xanthosine phos 22.5 73 0.0016 22.2 2.0 25 27-51 172-196 (248)
60 PRK13770 histidinol dehydrogen 22.3 39 0.00084 25.6 0.7 33 28-60 324-356 (416)
61 TIGR00288 conserved hypothetic 21.3 1.1E+02 0.0024 20.1 2.6 19 27-45 118-136 (160)
62 KOG3466|consensus 21.0 58 0.0013 21.2 1.2 15 64-78 75-89 (157)
63 TIGR03248 galactar-dH20 galact 20.8 2E+02 0.0044 22.5 4.2 44 1-46 379-422 (507)
64 PF05656 DUF805: Protein of un 20.8 57 0.0012 19.4 1.1 12 28-39 64-75 (120)
65 TIGR00069 hisD histidinol dehy 20.6 49 0.0011 24.9 0.9 32 28-59 303-334 (393)
66 PF06658 DUF1168: Protein of u 20.5 56 0.0012 21.1 1.0 18 66-83 18-35 (142)
67 COG4982 3-oxoacyl-[acyl-carrie 20.4 1E+02 0.0022 25.2 2.6 21 26-46 409-429 (866)
68 PRK12447 histidinol dehydrogen 20.1 43 0.00093 25.5 0.5 33 27-59 328-360 (426)
No 1
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-35 Score=217.04 Aligned_cols=84 Identities=36% Similarity=0.516 Sum_probs=82.3
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+||+.++++++.+|+++|+||+++|||++|||||+||+|+..++|++||.++||||+.|+|||||||
T Consensus 81 vKDn~~~~G~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgG 160 (475)
T COG0154 81 VKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGG 160 (475)
T ss_pred EeeccccCCCccCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||.
T Consensus 161 SAaA 164 (475)
T COG0154 161 SAAA 164 (475)
T ss_pred HHHH
Confidence 9973
No 2
>PRK07869 amidase; Provisional
Probab=100.00 E-value=2.1e-34 Score=211.96 Aligned_cols=84 Identities=29% Similarity=0.362 Sum_probs=81.9
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|++.+.++++.+|+++|+||+++|||++||||||||+++..++|.+||.++||||++|+|||||||
T Consensus 81 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgG 160 (468)
T PRK07869 81 IKDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGG 160 (468)
T ss_pred EecCcccCCcccCcccHhhcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||.
T Consensus 161 sAaA 164 (468)
T PRK07869 161 SAAL 164 (468)
T ss_pred HHHH
Confidence 9973
No 3
>PRK07042 amidase; Provisional
Probab=100.00 E-value=3.5e-34 Score=210.75 Aligned_cols=84 Identities=31% Similarity=0.427 Sum_probs=81.8
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..+.|.+||.++||||++|+|||||||
T Consensus 79 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 158 (464)
T PRK07042 79 IKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAG 158 (464)
T ss_pred EEcccccCCcccCCCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 159 sAaa 162 (464)
T PRK07042 159 AGAA 162 (464)
T ss_pred HHHH
Confidence 9973
No 4
>PRK07487 amidase; Provisional
Probab=100.00 E-value=4.3e-34 Score=210.62 Aligned_cols=84 Identities=39% Similarity=0.579 Sum_probs=82.1
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..+.|.+||.++||||++|+|||||||
T Consensus 80 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgG 159 (469)
T PRK07487 80 VKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGG 159 (469)
T ss_pred EecccccCCCccCcchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 160 sAaA 163 (469)
T PRK07487 160 AAAA 163 (469)
T ss_pred HHHH
Confidence 9973
No 5
>PRK05962 amidase; Validated
Probab=100.00 E-value=4.7e-34 Score=208.33 Aligned_cols=84 Identities=30% Similarity=0.380 Sum_probs=81.1
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|+++|++||+|+..+.++++ .+|+++|+||+++|||++||||||||+++..+.|.+||.++||||+.|+||||||
T Consensus 53 vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSg 132 (424)
T PRK05962 53 IKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSS 132 (424)
T ss_pred EEeeeecCCcccCCCChhhhcCCCCcCChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcH
Confidence 799999999999999999998888 6899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
||||+
T Consensus 133 GsAaa 137 (424)
T PRK05962 133 GAAVS 137 (424)
T ss_pred HHHHH
Confidence 99973
No 6
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=6.2e-34 Score=209.00 Aligned_cols=84 Identities=33% Similarity=0.500 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++|++|+..+.++++.+|+++|+|||++|||++||||||||+++..++|.+||.++||||+.++|||||||
T Consensus 63 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 142 (459)
T PRK00012 63 IKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGG 142 (459)
T ss_pred EecccccCCCccCccCHhhccCCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 143 sAaa 146 (459)
T PRK00012 143 SAAA 146 (459)
T ss_pred HHHH
Confidence 9973
No 7
>PRK06170 amidase; Provisional
Probab=100.00 E-value=7.8e-34 Score=209.92 Aligned_cols=84 Identities=42% Similarity=0.583 Sum_probs=81.9
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|++.+.++++.+|+++|+||+++|||++||||||||+++..+.|.+||.++||||+.|+|||||||
T Consensus 83 VKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 162 (490)
T PRK06170 83 VKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGG 162 (490)
T ss_pred EecccccCCcccCCCChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 163 sAaA 166 (490)
T PRK06170 163 SAAA 166 (490)
T ss_pred HHHH
Confidence 9973
No 8
>PRK07486 amidase; Provisional
Probab=100.00 E-value=7e-34 Score=210.03 Aligned_cols=84 Identities=37% Similarity=0.499 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..+.|++||.++||||++|+|||||||
T Consensus 85 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 164 (484)
T PRK07486 85 PKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGG 164 (484)
T ss_pred EecccccCCcCcccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 165 sAaa 168 (484)
T PRK07486 165 AAAA 168 (484)
T ss_pred HHHH
Confidence 9973
No 9
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=7.4e-34 Score=208.64 Aligned_cols=84 Identities=29% Similarity=0.461 Sum_probs=81.9
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..+.|..||.++||||+.|+|||||||
T Consensus 63 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 142 (460)
T TIGR00132 63 VKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGG 142 (460)
T ss_pred EecccccCCcccCcCChhhccCCCCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 143 sAaa 146 (460)
T TIGR00132 143 SAAA 146 (460)
T ss_pred HHHH
Confidence 9973
No 10
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=7.1e-34 Score=208.58 Aligned_cols=84 Identities=33% Similarity=0.455 Sum_probs=81.1
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|+++|++||+|+..+.++++ .+|+++|+||+++|||++||||||||+++..+.|.+||.++||||++|+||||||
T Consensus 72 vKD~~~v~G~~tt~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSg 151 (452)
T TIGR02715 72 VKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSG 151 (452)
T ss_pred EEeccccCCceeCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchH
Confidence 799999999999999999999887 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
||||+
T Consensus 152 GsAaa 156 (452)
T TIGR02715 152 GSAAA 156 (452)
T ss_pred HHHHH
Confidence 99973
No 11
>PRK06529 amidase; Provisional
Probab=100.00 E-value=9e-34 Score=209.36 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=81.6
Q ss_pred CCCc-cccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGM-VFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~-~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+ |+++|++||+|+..+.++++.+|+++|+|||++|||++||||||||+++..+.|++||.++||||+.|+||||||
T Consensus 70 vKD~~~~v~G~~tt~Gs~~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSg 149 (482)
T PRK06529 70 LKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSG 149 (482)
T ss_pred EecCCcccCCCccCcchHHhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcH
Confidence 7998 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
||||+
T Consensus 150 GsAaa 154 (482)
T PRK06529 150 GAAAL 154 (482)
T ss_pred HHHHH
Confidence 99973
No 12
>PRK07139 amidase; Provisional
Probab=100.00 E-value=8.4e-34 Score=207.88 Aligned_cols=84 Identities=26% Similarity=0.251 Sum_probs=81.7
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..+.|.+||.++||||+.|+|||||||
T Consensus 44 vKD~~~v~G~~tt~Gs~~l~~~~~~~dA~vV~rLr~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 123 (439)
T PRK07139 44 IKDNFATSEGPTHASSKSLENFKPSYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSG 123 (439)
T ss_pred EEcceecCCCccCcChHHHccCCCCCchHHHHHHHHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 124 SAAa 127 (439)
T PRK07139 124 SAAT 127 (439)
T ss_pred HHHH
Confidence 9973
No 13
>PRK07235 amidase; Provisional
Probab=100.00 E-value=1.3e-33 Score=209.73 Aligned_cols=84 Identities=31% Similarity=0.369 Sum_probs=82.1
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++|++|+..++++++.+|+++|+||+++|||++|||||+||+++..++|..||.++||||+.++|||||||
T Consensus 95 vKD~i~v~G~ptt~Gs~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgG 174 (502)
T PRK07235 95 LKDNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSG 174 (502)
T ss_pred EecccccCCcccCccChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 175 sAAa 178 (502)
T PRK07235 175 SAAL 178 (502)
T ss_pred HHHH
Confidence 9974
No 14
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=1.1e-33 Score=208.43 Aligned_cols=84 Identities=36% Similarity=0.543 Sum_probs=81.8
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+|||++|||++||||||||+++..+.|.+||.++|||++.++|||||||
T Consensus 81 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 160 (472)
T PRK07488 81 IKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGG 160 (472)
T ss_pred EEcccccCCCccCcCChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 161 sAaa 164 (472)
T PRK07488 161 TAAA 164 (472)
T ss_pred HHHH
Confidence 9973
No 15
>PRK09201 amidase; Provisional
Probab=100.00 E-value=1.2e-33 Score=208.14 Aligned_cols=84 Identities=33% Similarity=0.469 Sum_probs=81.1
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|+++|++||+|+..+.++++ ++|+++|+||+++|||++||||||||+++..+.|.+||.++||||+.++||||||
T Consensus 79 vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 158 (465)
T PRK09201 79 VKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSG 158 (465)
T ss_pred EEeccccCCcccCcCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchH
Confidence 799999999999999999999887 6999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
|||++
T Consensus 159 GsAaa 163 (465)
T PRK09201 159 GSAAA 163 (465)
T ss_pred HHHHH
Confidence 99973
No 16
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=5.2e-34 Score=203.28 Aligned_cols=84 Identities=43% Similarity=0.644 Sum_probs=74.1
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.+.++++|+++|++|+++|||++||||||||+++.++.|..||+++||||+.++|||||||
T Consensus 55 vKD~~~~~g~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~G 134 (441)
T PF01425_consen 55 VKDNIDVAGLPTTAGSPALADNPPTEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGG 134 (441)
T ss_dssp EETTBSBTTSBB-TTSGGGTTBBBSSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHH
T ss_pred ccccccccccccccccccccCcCcccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 135 saaa 138 (441)
T PF01425_consen 135 SAAA 138 (441)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9873
No 17
>PRK08310 amidase; Provisional
Probab=100.00 E-value=1.9e-33 Score=203.68 Aligned_cols=84 Identities=32% Similarity=0.353 Sum_probs=79.9
Q ss_pred CCCccccCCccCCCCccccc--CCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLK--GRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSS 78 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~--~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS 78 (84)
|||+|+++|++||+|++.+. +.++.+|+++|+||+++|||++||||||||+++..+.|..||.++|||++.++|||||
T Consensus 33 vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSS 112 (395)
T PRK08310 33 VKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSS 112 (395)
T ss_pred EeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEeccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCc
Confidence 79999999999999999984 4677899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q psy178 79 GGEVLK 84 (84)
Q Consensus 79 ~Gsaal 84 (84)
|||||+
T Consensus 113 gGsAaa 118 (395)
T PRK08310 113 SGSAAA 118 (395)
T ss_pred hHHHHH
Confidence 999973
No 18
>PRK06169 putative amidase; Provisional
Probab=99.98 E-value=3.1e-33 Score=205.82 Aligned_cols=84 Identities=35% Similarity=0.470 Sum_probs=80.1
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|+++|++||+|+..+.+..+ .+|+++|++|+++|||++||||||||+++..+.|.+||.++||||++|+||||||
T Consensus 79 vKD~~~v~G~~tt~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSg 158 (466)
T PRK06169 79 IKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSG 158 (466)
T ss_pred EecccccCCcccCccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcH
Confidence 799999999999999999986655 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
||||+
T Consensus 159 GsAaa 163 (466)
T PRK06169 159 GAAAA 163 (466)
T ss_pred HHHHH
Confidence 99973
No 19
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.98 E-value=3.3e-33 Score=204.18 Aligned_cols=83 Identities=28% Similarity=0.355 Sum_probs=79.0
Q ss_pred CCCccccCCccCCCCcccccC-C-CCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKG-R-KASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSS 78 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~-~-~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS 78 (84)
|||+|+++|++|++||+.+.+ + ++.+|+++|+||+++|||++|||||+||+++..+.|.+||.++||||+.|+|||||
T Consensus 34 VKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilGKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSS 113 (422)
T PLN02722 34 VKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSS 113 (422)
T ss_pred EEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEEEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 799999999999999998874 4 46799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q psy178 79 GGEVL 83 (84)
Q Consensus 79 ~Gsaa 83 (84)
|||||
T Consensus 114 sGSAa 118 (422)
T PLN02722 114 SGSAV 118 (422)
T ss_pred HHHHH
Confidence 99996
No 20
>PRK06102 hypothetical protein; Provisional
Probab=99.98 E-value=3.8e-33 Score=204.85 Aligned_cols=84 Identities=32% Similarity=0.436 Sum_probs=80.0
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCC--CCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDF--SRTPGGS 77 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~--~~~~GGS 77 (84)
|||+|+++|++||+|+..+.++++ .+|+++|+||+++|||++||||||||+++..+.|.+||.++||||+ .|+||||
T Consensus 77 vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGS 156 (452)
T PRK06102 77 WKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGS 156 (452)
T ss_pred EEeccccCCCccCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCC
Confidence 799999999999999999998776 7999999999999999999999999999999999999999999986 7999999
Q ss_pred ChhhhcC
Q psy178 78 SGGEVLK 84 (84)
Q Consensus 78 S~Gsaal 84 (84)
||||||+
T Consensus 157 SgGsAaa 163 (452)
T PRK06102 157 SSGSAVA 163 (452)
T ss_pred cHHHHHH
Confidence 9999973
No 21
>PRK12470 amidase; Provisional
Probab=99.98 E-value=5.8e-33 Score=204.42 Aligned_cols=82 Identities=43% Similarity=0.542 Sum_probs=79.2
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+ ++++.+|+++|+||+++|||++||||||||+++..+.|.+||.++||||+.|+|||||||
T Consensus 80 vKD~~~v~G~~tt~Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 158 (462)
T PRK12470 80 IKDDVDVAGEVTTYGSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGG 158 (462)
T ss_pred EecCcccCCceeCCCCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhH
Confidence 7999999999999999985 578899999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy178 81 EVL 83 (84)
Q Consensus 81 saa 83 (84)
||+
T Consensus 159 sAa 161 (462)
T PRK12470 159 SAA 161 (462)
T ss_pred HHH
Confidence 996
No 22
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.97 E-value=7.2e-33 Score=208.13 Aligned_cols=83 Identities=30% Similarity=0.407 Sum_probs=80.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+. +++.+|+++|+||+++|||++|||||+||+++..+.|..||.++||||++|++||||||
T Consensus 39 VKD~idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsG 117 (561)
T TIGR02713 39 VKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSG 117 (561)
T ss_pred EEcccccCCCccCcCCHhHc-CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHH
Confidence 79999999999999999986 78899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 118 SAaA 121 (561)
T TIGR02713 118 SAVA 121 (561)
T ss_pred HHHH
Confidence 9973
No 23
>PRK08186 allophanate hydrolase; Provisional
Probab=99.97 E-value=8.1e-33 Score=209.10 Aligned_cols=83 Identities=29% Similarity=0.376 Sum_probs=79.9
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+. +.+.+|+++|+||+++|||++|||||+||+++..+.|..||.++||||++|++||||||
T Consensus 76 VKDnidvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsG 154 (600)
T PRK08186 76 VKDNIDVAGLPTTAACPAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSG 154 (600)
T ss_pred eecceecCCcccCcCCHhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHH
Confidence 79999999999999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 155 SAaA 158 (600)
T PRK08186 155 SAVA 158 (600)
T ss_pred HHHH
Confidence 9973
No 24
>PRK08137 amidase; Provisional
Probab=99.97 E-value=1.1e-32 Score=204.21 Aligned_cols=84 Identities=31% Similarity=0.428 Sum_probs=79.3
Q ss_pred CCCccccC-CccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc-----CCCCCCCCCcCCCCCCCCCCC
Q psy178 1 MGGMVFVD-GLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS-----WETTNYITGKTVNPYDFSRTP 74 (84)
Q Consensus 1 ~kD~~~~~-G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~~~~~ 74 (84)
|||+|+++ |++||+|+..+.++++.+|+++|+||+++|||++||||||||++. ..++|.+||.++||||++|+|
T Consensus 80 vKD~~~v~~G~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 159 (497)
T PRK08137 80 LKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP 159 (497)
T ss_pred eecceeecCCCCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 79999999 999999999999999999999999999999999999999999954 446899999999999999999
Q ss_pred CCCChhhhcC
Q psy178 75 GGSSGGEVLK 84 (84)
Q Consensus 75 GGSS~Gsaal 84 (84)
|||||||||+
T Consensus 160 GGSSgGsAaA 169 (497)
T PRK08137 160 CGSSSGSGAA 169 (497)
T ss_pred CcCccHHHHH
Confidence 9999999973
No 25
>PRK07056 amidase; Provisional
Probab=99.97 E-value=1.4e-32 Score=201.88 Aligned_cols=84 Identities=33% Similarity=0.427 Sum_probs=80.8
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCC----CCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY----DFSRTPG 75 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~----~~~~~~G 75 (84)
|||+|+++|++||+|+..+.++++ .+|+++|+||+++|||++||||||||+++..+.|.+||.++||| ++.++||
T Consensus 79 vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~G 158 (454)
T PRK07056 79 VKDLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPG 158 (454)
T ss_pred EEeeeccCCCccCCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCC
Confidence 799999999999999999999888 68999999999999999999999999999999999999999999 8899999
Q ss_pred CCChhhhcC
Q psy178 76 GSSGGEVLK 84 (84)
Q Consensus 76 GSS~Gsaal 84 (84)
||||||||+
T Consensus 159 GSSgGsAaa 167 (454)
T PRK07056 159 GSSSGAAVS 167 (454)
T ss_pred CcchHHHHH
Confidence 999999973
No 26
>PRK06061 amidase; Provisional
Probab=99.97 E-value=4.4e-32 Score=200.63 Aligned_cols=83 Identities=36% Similarity=0.408 Sum_probs=77.2
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+.... .++.+|+++|++|+++|||++||||||||+++..+.|.+||.++||||++|+|||||||
T Consensus 89 vKD~~~v~G~~tt~Gs~~~~-~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 167 (483)
T PRK06061 89 VKDDVDVAGVPTAFGTAGEV-PPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGG 167 (483)
T ss_pred EEcccccCCceecCCCcccC-CCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHH
Confidence 69999999999999998532 34479999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 168 sAaA 171 (483)
T PRK06061 168 SAAA 171 (483)
T ss_pred HHHH
Confidence 9973
No 27
>PRK11910 amidase; Provisional
Probab=99.97 E-value=4.2e-31 Score=199.86 Aligned_cols=84 Identities=29% Similarity=0.387 Sum_probs=79.3
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc-----CCCCCCCCCcCCCCCCCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS-----WETTNYITGKTVNPYDFSRTPG 75 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~~~~~G 75 (84)
|||+|+++|++||+|+.++.++++.+||++|++||++|||++|||||+||+++ ..++|.+||+++|||++.+.||
T Consensus 237 VKDni~t~G~pTTaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pG 316 (615)
T PRK11910 237 LKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPS 316 (615)
T ss_pred EEcCcccCCCccCcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Confidence 69999999999999999999999999999999999999999999999999976 3467889999999999999999
Q ss_pred CCChhhhcC
Q psy178 76 GSSGGEVLK 84 (84)
Q Consensus 76 GSS~Gsaal 84 (84)
|||||||+.
T Consensus 317 GSSsGSAAA 325 (615)
T PRK11910 317 GSSSGSATA 325 (615)
T ss_pred CCCchHHHH
Confidence 999999973
No 28
>PRK06828 amidase; Provisional
Probab=99.97 E-value=3.3e-31 Score=196.67 Aligned_cols=84 Identities=33% Similarity=0.514 Sum_probs=78.9
Q ss_pred CCCccccCC-ccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc-----CCCCCCCCCcCCCCCCC---C
Q psy178 1 MGGMVFVDG-LSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS-----WETTNYITGKTVNPYDF---S 71 (84)
Q Consensus 1 ~kD~~~~~G-~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~---~ 71 (84)
|||+|+++| ++||+|+..+.++++.+|+++|++||++|||++|||||+||++. ..+.|..||+++|||++ .
T Consensus 87 vKD~~~v~gg~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~ 166 (491)
T PRK06828 87 LKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDD 166 (491)
T ss_pred eeeeEEecCCCcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCC
Confidence 799999996 99999999999999999999999999999999999999999964 47889999999999999 6
Q ss_pred CCCCCCChhhhcC
Q psy178 72 RTPGGSSGGEVLK 84 (84)
Q Consensus 72 ~~~GGSS~Gsaal 84 (84)
|+|||||||||++
T Consensus 167 r~pGGSSgGsAaa 179 (491)
T PRK06828 167 MFVGGSSTGSAIA 179 (491)
T ss_pred cCCCcCchHHHHH
Confidence 8999999999973
No 29
>PRK06707 amidase; Provisional
Probab=99.96 E-value=1.6e-30 Score=194.76 Aligned_cols=83 Identities=30% Similarity=0.357 Sum_probs=78.2
Q ss_pred CCCcccc-CCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc-----CCCCCCCCCcCCCCCCC-CCC
Q psy178 1 MGGMVFV-DGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS-----WETTNYITGKTVNPYDF-SRT 73 (84)
Q Consensus 1 ~kD~~~~-~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~g~~~NP~~~-~~~ 73 (84)
|||+|++ +|++||+|+..+.++++.+|+++|+|||++|||++|||||+||++. ..++|..||+++|||++ .+.
T Consensus 144 vKD~i~~~~g~~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~ 223 (536)
T PRK06707 144 VKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFD 223 (536)
T ss_pred EecccccCCCCccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCC
Confidence 6999999 9999999999999999999999999999999999999999999953 46788899999999998 689
Q ss_pred CCCCChhhhc
Q psy178 74 PGGSSGGEVL 83 (84)
Q Consensus 74 ~GGSS~Gsaa 83 (84)
|||||||||+
T Consensus 224 pGGSSsGSAa 233 (536)
T PRK06707 224 TSGSSSGSAT 233 (536)
T ss_pred CCCCCchHHH
Confidence 9999999996
No 30
>PRK06565 amidase; Validated
Probab=99.96 E-value=5.6e-30 Score=192.45 Aligned_cols=83 Identities=31% Similarity=0.406 Sum_probs=78.3
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCC----CCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSR----TPGG 76 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~----~~GG 76 (84)
|||+|+++|++||+|+..+.+.++.+|+++|++||++|||++||||||||+++..+ +.+||+++||||+.+ .|||
T Consensus 83 vKD~~~v~G~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGG 161 (566)
T PRK06565 83 AKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASG 161 (566)
T ss_pred EecccccCCCCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCC
Confidence 79999999999999999999999999999999999999999999999999988765 679999999999999 5999
Q ss_pred CChhhhcC
Q psy178 77 SSGGEVLK 84 (84)
Q Consensus 77 SS~Gsaal 84 (84)
||||||++
T Consensus 162 SSgGsAaA 169 (566)
T PRK06565 162 SSNGAGTA 169 (566)
T ss_pred CCccHHHH
Confidence 99999973
No 31
>KOG1211|consensus
Probab=99.94 E-value=3.1e-28 Score=180.53 Aligned_cols=83 Identities=34% Similarity=0.414 Sum_probs=81.1
Q ss_pred CCCccccCCccC-CCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSN-ATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~t-t~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|++++++| ||.+..++++.+++||++|++|+++||+++|||||+||+|+..+++.+||+++|||++.+.|||||+
T Consensus 89 IKDnf~tk~~~t~t~~S~~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~ 168 (506)
T KOG1211|consen 89 IKDNFDTKDKPTTTAASWMLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSS 168 (506)
T ss_pred EeeceecCCccCCchhhhhhccCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcc
Confidence 799999999999 8989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy178 80 GEVL 83 (84)
Q Consensus 80 Gsaa 83 (84)
|||+
T Consensus 169 GSA~ 172 (506)
T KOG1211|consen 169 GSAA 172 (506)
T ss_pred hhHH
Confidence 9986
No 32
>KOG1212|consensus
Probab=99.90 E-value=2.3e-24 Score=161.33 Aligned_cols=84 Identities=45% Similarity=0.695 Sum_probs=82.4
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
+||+|.++|+.+|.|.......+.++|+.+|+.|+++|||++.+||+||.+|+.++.|..||.|.||||.+|+|||||||
T Consensus 127 vKe~~~vkg~d~T~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGG 206 (560)
T KOG1212|consen 127 VKESISVKGYDSTAGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGG 206 (560)
T ss_pred hhhheeecCccccchhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
+|||
T Consensus 207 EaAL 210 (560)
T KOG1212|consen 207 EAAL 210 (560)
T ss_pred HHHH
Confidence 9986
No 33
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=65.93 E-value=8.1 Score=26.86 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=30.9
Q ss_pred CCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc
Q psy178 14 TGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS 53 (84)
Q Consensus 14 ~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~ 53 (84)
-|...+..-+.-++..=++.+|..||-++|-|++||--+-
T Consensus 148 ~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~vpEvilA 187 (237)
T TIGR01698 148 EGVYAWFPGPHYETPAEIRMAGILGADLVGMSTVPETIAA 187 (237)
T ss_pred CEEEEEecCCCcCCHHHHHHHHHcCCCEeccCchHHHHHH
Confidence 4555555555567777799999999999999999997543
No 34
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=47.14 E-value=23 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccccc
Q psy178 14 TGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTS 53 (84)
Q Consensus 14 ~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~ 53 (84)
-|...+..-+.-++..=++.+|..||-++|-|++||-.+-
T Consensus 172 ~GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lA 211 (262)
T COG0005 172 EGVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILA 211 (262)
T ss_pred ceEEEEecCCCcCCHHHHHHHHHhCCCcccCcCCcHHHHh
Confidence 3555554445555666688999999999999999997654
No 35
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=47.13 E-value=19 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHHHCCCeeEEecCcCccccc
Q psy178 23 KASEDAPIVKILREAGAIPLCNTNVPELCTS 53 (84)
Q Consensus 23 ~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~ 53 (84)
+.-++..=++.|+..|+-++|-|.+||.-+-
T Consensus 159 P~fET~AEir~~r~~GaDvVGMS~vPEvilA 189 (264)
T PRK07823 159 PRFSTRAESRWFAAQGWSLVNMTGYPEAVLA 189 (264)
T ss_pred CCCCCHHHHHHHHHcCCCEeccCccHHHHHH
Confidence 3345566678889999999999999997543
No 36
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=43.12 E-value=21 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=28.9
Q ss_pred CcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccc
Q psy178 15 GALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCT 52 (84)
Q Consensus 15 G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~ 52 (84)
|......-+.-++..=++.++..||-++|-|.+||.-+
T Consensus 159 GvYv~~~GPrfET~AEir~~r~~GaDvVGMS~vPEvil 196 (290)
T PRK07432 159 GTYVCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKL 196 (290)
T ss_pred eEEEEeeCCCCCcHHHHHHHHHcCCCEeccCchHHHHH
Confidence 44444444455677778999999999999999999754
No 37
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=40.16 E-value=26 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHHCCCeeEEecCcCcccc
Q psy178 23 KASEDAPIVKILREAGAIPLCNTNVPELCT 52 (84)
Q Consensus 23 ~~~~~a~~v~~L~~aGai~~gkt~~~e~~~ 52 (84)
+.-++..=++.++..||-++|-|.+||--+
T Consensus 164 PrfET~AEir~~r~~GaDvVGMStvPEvil 193 (289)
T PRK08931 164 PQFSTLAESKLYRSWGCDVIGMTNMPEAKL 193 (289)
T ss_pred CCCCCHHHHHHHHHcCCCEeccCccHHHHH
Confidence 334566668889999999999999999754
No 38
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=37.23 E-value=31 Score=24.30 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=26.9
Q ss_pred CcccccCCCCCCcHHHHHHHHHC-CCeeEEecCcCcccc
Q psy178 15 GALKLKGRKASEDAPIVKILREA-GAIPLCNTNVPELCT 52 (84)
Q Consensus 15 G~~~~~~~~~~~~a~~v~~L~~a-Gai~~gkt~~~e~~~ 52 (84)
|......-+.-++..=++.++.. |+-++|-|.+||--+
T Consensus 160 GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvil 198 (267)
T PRK08564 160 GTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNL 198 (267)
T ss_pred eEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHHH
Confidence 33333333444566667888887 999999999999754
No 39
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=36.58 E-value=83 Score=22.90 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=27.8
Q ss_pred cHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCC
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYD 69 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~ 69 (84)
-+..++++-++|.|-+.-+|.+....-..+..+.+| .||+.
T Consensus 110 ~g~y~~~aa~~Gligi~~tN~~~~vaP~GG~~~~lG--TNPia 150 (330)
T PLN00105 110 LGYYAEKVAQQGLIGLVFANSPEFVAPAGGIEPIFG--TNPIG 150 (330)
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCccc--CCCeE
Confidence 467899999999999999998775433333333433 35553
No 40
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=36.56 E-value=34 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=20.1
Q ss_pred cccCCCCCCcHHHHHHHHHCCCeeEE
Q psy178 18 KLKGRKASEDAPIVKILREAGAIPLC 43 (84)
Q Consensus 18 ~~~~~~~~~~a~~v~~L~~aGai~~g 43 (84)
.|....--.+..+|++|++.|++++-
T Consensus 34 Iyv~~eIVHN~~Vv~~L~~~g~~fve 59 (294)
T COG0761 34 IYVRHEIVHNRYVVDRLREKGAIFVE 59 (294)
T ss_pred eEEEeccccCHHHHHHHHHcCCEecc
Confidence 34344456789999999999988885
No 41
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=33.91 E-value=10 Score=20.66 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=19.0
Q ss_pred HHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCC
Q psy178 30 IVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYD 69 (84)
Q Consensus 30 ~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~ 69 (84)
-.++|.++||-+ ---+.+||......+-..-+....||+
T Consensus 7 gLr~L~~aG~~v-~iM~~~eF~~CW~nFV~~~~~~F~pW~ 45 (55)
T PF05240_consen 7 GLRRLCQAGAQV-SIMTYSEFQYCWENFVDNQGRPFQPWE 45 (55)
T ss_dssp HHHHHHHTT-EE-EE--HHHHHHHHHHCB--TT------T
T ss_pred HHHHHHHCCCeE-EecCcHHHHHHHHHHhcCCCCCCCcch
Confidence 357888999554 445568887665555555677788886
No 42
>PF06591 Phage_T4_Ndd: T4-like phage nuclear disruption protein (Ndd); InterPro: IPR009514 This family consists of several nuclear disruption (Ndd) proteins from T4-like phages. Early in a Bacteriophage T4 infection, the phage ndd gene causes the rapid destruction of the structure of the Escherichia coli nucleoid. The targets of Ndd action may be the chromosomal sequences that determine the structure of the nucleoid [].
Probab=33.77 E-value=45 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHCCCeeEEecCcCccccc
Q psy178 31 VKILREAGAIPLCNTNVPELCTS 53 (84)
Q Consensus 31 v~~L~~aGai~~gkt~~~e~~~~ 53 (84)
++.|+.+||..+|....-||..+
T Consensus 6 ~~di~~agaq~ig~~~~G~f~~~ 28 (152)
T PF06591_consen 6 RKDILSAGAQRIGTFKNGEFFVG 28 (152)
T ss_pred hhhHhhcCCEEEEEEeCcEEEcC
Confidence 67899999999999999999544
No 43
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=31.25 E-value=43 Score=22.81 Aligned_cols=17 Identities=41% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHHHHHCCCeeEEec
Q psy178 29 PIVKILREAGAIPLCNT 45 (84)
Q Consensus 29 ~~v~~L~~aGai~~gkt 45 (84)
..|+.|+++|+.+.|--
T Consensus 130 eai~~l~~~G~~V~gv~ 146 (201)
T COG0461 130 EAVEALREAGAEVVGVA 146 (201)
T ss_pred HHHHHHHHcCCeEEEEE
Confidence 46899999999998743
No 44
>PF13606 Ank_3: Ankyrin repeat
Probab=30.87 E-value=45 Score=15.18 Aligned_cols=16 Identities=44% Similarity=0.376 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHCCCee
Q psy178 26 EDAPIVKILREAGAIP 41 (84)
Q Consensus 26 ~~a~~v~~L~~aGai~ 41 (84)
..-.+|+.|.+.|+-+
T Consensus 13 g~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 13 GNIEIVKYLLEHGADV 28 (30)
T ss_pred CCHHHHHHHHHcCCCC
Confidence 3567899999999754
No 45
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=29.31 E-value=40 Score=15.31 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.3
Q ss_pred cHHHHHHHHHCCCeeEEe
Q psy178 27 DAPIVKILREAGAIPLCN 44 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gk 44 (84)
+..+|+.|.+.||-+--+
T Consensus 14 ~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 14 HPDIVKLLLKHGADINAR 31 (33)
T ss_dssp CHHHHHHHHHTTSCTTCB
T ss_pred HHHHHHHHHHCcCCCCCC
Confidence 678999999999876443
No 46
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=29.28 E-value=1.3e+02 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.7
Q ss_pred cHHHHHHHHHCCCeeEEecCcCcccc
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELCT 52 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~~ 52 (84)
=+..++++-++|.|-+.-||.+....
T Consensus 120 ~g~Y~~~aa~~G~Igi~~tNs~~~va 145 (349)
T TIGR03175 120 LSYFVRQAAEQGMVALSMCQSDPMVV 145 (349)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCeeC
Confidence 46789999999999999999877543
No 47
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=29.14 E-value=1.3e+02 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=21.5
Q ss_pred cHHHHHHHHHCCCeeEEecCcCcccc
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELCT 52 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~~ 52 (84)
-+..++++-++|.|-+.-||.+....
T Consensus 120 ~g~y~~~aa~~G~igi~~tn~~~~va 145 (332)
T PRK13260 120 GGSYGWQAAEKGYIGICWTNSIAVMP 145 (332)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCeeC
Confidence 35688999999999999999887543
No 48
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.94 E-value=35 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHCCCeeEEec
Q psy178 24 ASEDAPIVKILREAGAIPLCNT 45 (84)
Q Consensus 24 ~~~~a~~v~~L~~aGai~~gkt 45 (84)
-.+++.+.+++.++|.+++|.+
T Consensus 85 lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 85 LSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp TTTHHHHHHHHHHTT-EESSS-
T ss_pred hHHHHHHHHHHHHCCCEEECcC
Confidence 4678999999999999999854
No 49
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=28.81 E-value=83 Score=17.61 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHCCCeeEEecCcCcc
Q psy178 26 EDAPIVKILREAGAIPLCNTNVPEL 50 (84)
Q Consensus 26 ~~a~~v~~L~~aGai~~gkt~~~e~ 50 (84)
.++..|++|++.|..+++=-++-|.
T Consensus 37 ~~~~~I~~L~~~G~~vicY~s~Gs~ 61 (74)
T PF03537_consen 37 FSKEEIARLKAQGKKVICYFSIGSA 61 (74)
T ss_dssp --HHHHHHHHHTT-EEEEEEESSEE
T ss_pred CCHHHHHHHHHCCCEEEEEEeCcee
Confidence 5678999999999999887775544
No 50
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=28.65 E-value=77 Score=22.09 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=27.1
Q ss_pred CcccccCCCCCCcHHHHHHHHHCCCeeEE--ecCcCccc
Q psy178 15 GALKLKGRKASEDAPIVKILREAGAIPLC--NTNVPELC 51 (84)
Q Consensus 15 G~~~~~~~~~~~~a~~v~~L~~aGai~~g--kt~~~e~~ 51 (84)
|+......+.+.|=.+|+.|.++|+-+++ +-|.||.+
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~A 195 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQA 195 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHH
Confidence 33333345556788899999999998885 77778876
No 51
>KOG0848|consensus
Probab=27.55 E-value=85 Score=22.75 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChhh
Q psy178 25 SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGGE 81 (84)
Q Consensus 25 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~Gs 81 (84)
..+..+-.+-..+||- |.-++.++......++.-|+..+-=|...+.||++|.-+
T Consensus 48 p~~p~~~Gy~s~~ga~--gap~l~p~~~p~~~wga~~~ap~~dw~~~~~pG~as~~~ 102 (317)
T KOG0848|consen 48 PQYPDYSGYWSQMGAT--GAPDLDPAGSPQGAWGAPYPAPEVDWAPPYGPGSASPAA 102 (317)
T ss_pred CCCccccCccccccCC--CCCccCcCCCCCcccCCCCCCccccccCCCCCCCCCccc
Confidence 3344444444455665 677777777777778888999988899999999887543
No 52
>PRK10098 putative dehydrogenase; Provisional
Probab=27.12 E-value=1.5e+02 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.0
Q ss_pred cHHHHHHHHHCCCeeEEecCcC
Q psy178 27 DAPIVKILREAGAIPLCNTNVP 48 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~ 48 (84)
-+..++++-++|.|-+.-||.+
T Consensus 124 ~g~y~~~aa~~G~igi~~tN~~ 145 (350)
T PRK10098 124 IGHWAEQCAAAGLVSIHFVNVV 145 (350)
T ss_pred hHHHHHHHHHCCCEEEEEecCC
Confidence 4678999999999999999943
No 53
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=26.75 E-value=72 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHHHCCCeeEEec
Q psy178 23 KASEDAPIVKILREAGAIPLCNT 45 (84)
Q Consensus 23 ~~~~~a~~v~~L~~aGai~~gkt 45 (84)
...-...+|+.|+++|-|.+-|.
T Consensus 42 i~DN~~~~vRALl~~grV~v~~e 64 (132)
T PF14468_consen 42 IHDNQSEVVRALLQAGRVKVNKE 64 (132)
T ss_pred EecCcCHHHHHHHHcCceeeccC
Confidence 45667899999999999998764
No 54
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=26.28 E-value=52 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCeeEEecCcCcccccCCCCCCC
Q psy178 28 APIVKILREAGAIPLCNTNVPELCTSWETTNYI 60 (84)
Q Consensus 28 a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~ 60 (84)
-.++.+++.||+|++|.-...-++--..+.|+.
T Consensus 330 ~~~l~~I~nAGsIFlG~~sPe~~GDY~aG~NHV 362 (425)
T COG0141 330 RELLGKIRNAGSIFLGHYSPESLGDYAAGPNHV 362 (425)
T ss_pred HHHHHHhcccceeeecCCCCccccccccCCCcc
Confidence 457899999999999987765566444555543
No 55
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=25.94 E-value=61 Score=21.21 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCC
Q psy178 28 APIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTV 65 (84)
Q Consensus 28 a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~ 65 (84)
..+++.|++.||+.+| +|-+.....++.|=..+
T Consensus 4 ~~l~~~l~~~~a~~~g-----~f~l~SG~~S~~yid~~ 36 (176)
T PRK13812 4 DDLIAALRDADAVQFG-----EFELSHGGTSEYYVDKY 36 (176)
T ss_pred HHHHHHHHHCCCEEeC-----CEEECcCCcCCEEEeCe
Confidence 3578999999999998 56665555555554443
No 56
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=24.48 E-value=1.1e+02 Score=20.90 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCeeEEecCcCcccccC
Q psy178 29 PIVKILREAGAIPLCNTNVPELCTSW 54 (84)
Q Consensus 29 ~~v~~L~~aGai~~gkt~~~e~~~~~ 54 (84)
..|++|.++||.-+.-.++|.++...
T Consensus 145 ~~v~~L~~~GAr~ilv~~lpplgc~P 170 (281)
T cd01847 145 SQVKNLLDAGARYILVPNLPDVSYTP 170 (281)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcccCc
Confidence 45789999999999999999988654
No 57
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.00 E-value=1e+02 Score=18.05 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCeeEEecCcCccccc
Q psy178 29 PIVKILREAGAIPLCNTNVPELCTS 53 (84)
Q Consensus 29 ~~v~~L~~aGai~~gkt~~~e~~~~ 53 (84)
.+++++++.|+.++.-|+-++--+.
T Consensus 64 ~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 64 AALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred HHHHHHHHcCCeEEEEECCCCChHH
Confidence 4567778999999999987765443
No 58
>COG2721 UxaA Altronate dehydratase [Carbohydrate transport and metabolism]
Probab=23.28 E-value=1.6e+02 Score=22.16 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=31.9
Q ss_pred CCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecC
Q psy178 2 GGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTN 46 (84)
Q Consensus 2 kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~ 46 (84)
.|.+++.-.++.-|..++ ..|..|...+..+.++||.++.=|+
T Consensus 259 ~~Vl~y~e~~~~~GL~fm--~tPg~D~va~T~~~A~Ga~~~~FTT 301 (381)
T COG2721 259 VDVLDYGERPTRKGLNFM--DTPGNDAVAVTAQVAAGANVVLFTT 301 (381)
T ss_pred eeecccccccCCCCeEEe--cCCCccHHHHHHHHhcCceEEEEeC
Confidence 355666666677775443 3588899999999999999987554
No 59
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=22.53 E-value=73 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=19.5
Q ss_pred cHHHHHHHHHCCCeeEEecCcCccc
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELC 51 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~ 51 (84)
+..=++.++..||.++|-+.+||--
T Consensus 172 T~AE~r~~~~~Gad~VgMs~vpEa~ 196 (248)
T TIGR01699 172 TAAEIRMMQIIGGDVVGMSVVPEVI 196 (248)
T ss_pred CHHHHHHHHHcCCcEEccchhHHHH
Confidence 3333488888999999999999864
No 60
>PRK13770 histidinol dehydrogenase; Provisional
Probab=22.34 E-value=39 Score=25.61 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCeeEEecCcCcccccCCCCCCC
Q psy178 28 APIVKILREAGAIPLCNTNVPELCTSWETTNYI 60 (84)
Q Consensus 28 a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~ 60 (84)
-.++.+++.+|+|++|.-...-++--..+.|+.
T Consensus 324 ~~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNHv 356 (416)
T PRK13770 324 QPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHV 356 (416)
T ss_pred HHHHhhCCEeceeccCCCCchhhhccccCCCCc
Confidence 457899999999999988766666444455543
No 61
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.34 E-value=1.1e+02 Score=20.08 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.2
Q ss_pred cHHHHHHHHHCCCeeEEec
Q psy178 27 DAPIVKILREAGAIPLCNT 45 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt 45 (84)
-.++|++||+.|..++|-.
T Consensus 118 F~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 118 FLPVINKAKENGKETIVIG 136 (160)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3789999999999988855
No 62
>KOG3466|consensus
Probab=21.01 E-value=58 Score=21.23 Aligned_cols=15 Identities=53% Similarity=0.977 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCC
Q psy178 64 TVNPYDFSRTPGGSS 78 (84)
Q Consensus 64 ~~NP~~~~~~~GGSS 78 (84)
-..||...-+|||||
T Consensus 75 HpqP~ifp~spGGss 89 (157)
T KOG3466|consen 75 HPQPYIFPDSPGGSS 89 (157)
T ss_pred CCCccccCCCCCCCc
Confidence 346888888999997
No 63
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=20.81 E-value=2e+02 Score=22.46 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=34.1
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTN 46 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~ 46 (84)
|-|.+++.-.++.-|...+. .|..|...+.-|.++||.++-=|+
T Consensus 379 i~~Vl~Y~e~~~~~Gl~lmd--tPg~D~~s~T~~~A~Ga~li~FTT 422 (507)
T TIGR03248 379 INGVLSPGERVTAKGLIFAA--TPASDFVCGTLQLASGMNLHVFTT 422 (507)
T ss_pred hhhhcccCCcCCCCCEEEEe--CCCCCHHHHHHHHhcCCeEEEecC
Confidence 34677777778777765553 467899999999999999987554
No 64
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=20.76 E-value=57 Score=19.39 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=9.1
Q ss_pred HHHHHHHHHCCC
Q psy178 28 APIVKILREAGA 39 (84)
Q Consensus 28 a~~v~~L~~aGa 39 (84)
+..|+||+|.|-
T Consensus 64 al~vRRlhD~G~ 75 (120)
T PF05656_consen 64 ALTVRRLHDIGR 75 (120)
T ss_pred HHHhhhhhcCCC
Confidence 467889998873
No 65
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=20.57 E-value=49 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeeEEecCcCcccccCCCCCC
Q psy178 28 APIVKILREAGAIPLCNTNVPELCTSWETTNY 59 (84)
Q Consensus 28 a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~ 59 (84)
-.++.+++.+|+|++|.-...-++--..+.|+
T Consensus 303 ~~~l~~I~nAGaiFlG~~tp~a~GDY~aG~NH 334 (393)
T TIGR00069 303 EELLPKIRNAGSIFLGPYTPEAAGDYAAGPNH 334 (393)
T ss_pred HHHHhhcCccceeccCCCCchhhhhccCCCCc
Confidence 45788999999999998776666644444453
No 66
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=20.51 E-value=56 Score=21.10 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCChhhhc
Q psy178 66 NPYDFSRTPGGSSGGEVL 83 (84)
Q Consensus 66 NP~~~~~~~GGSS~Gsaa 83 (84)
.|...-+.+-|||.|++.
T Consensus 18 ~~pe~V~NV~GSSAGAGS 35 (142)
T PF06658_consen 18 PPPEFVRNVQGSSAGAGS 35 (142)
T ss_pred CCCeeeccccccccccCc
Confidence 344444678899998874
No 67
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=20.40 E-value=1e+02 Score=25.20 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHCCCeeEEecC
Q psy178 26 EDAPIVKILREAGAIPLCNTN 46 (84)
Q Consensus 26 ~~a~~v~~L~~aGai~~gkt~ 46 (84)
--+.+|++|++.||.++..|.
T Consensus 409 Iaa~Vv~~LL~gGAtVI~TTS 429 (866)
T COG4982 409 IAAAVVARLLAGGATVIATTS 429 (866)
T ss_pred hHHHHHHHHHhCCcEEEEEcc
Confidence 357899999999999998663
No 68
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=20.09 E-value=43 Score=25.45 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=23.7
Q ss_pred cHHHHHHHHHCCCeeEEecCcCcccccCCCCCC
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELCTSWETTNY 59 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~ 59 (84)
.-.++.+++.+|+|++|.-.-.-++--..+.|+
T Consensus 328 ~~~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNH 360 (426)
T PRK12447 328 PDWFLENMTNYGALFLGERTNVAYGDKVIGTNH 360 (426)
T ss_pred HHHHHhhcCccceeccCCCCchhhhhcccCCCc
Confidence 345789999999999998776556643444443
Done!