Query psy178
Match_columns 84
No_of_seqs 179 out of 1164
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:24:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 7E-35 2.4E-39 213.8 6.4 84 1-84 66-149 (476)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 9.3E-35 3.2E-39 213.7 6.8 84 1-84 78-161 (485)
3 3a1k_A Amidase; AS family enzy 100.0 1.1E-34 3.7E-39 215.1 3.7 84 1-84 95-178 (521)
4 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 5.3E-34 1.8E-38 209.6 7.1 84 1-84 71-154 (478)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 2.5E-34 8.5E-39 211.6 5.1 84 1-84 71-157 (493)
6 2dc0_A Probable amidase; struc 100.0 5.4E-34 1.8E-38 207.5 6.5 82 1-84 72-154 (434)
7 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 5.4E-34 1.8E-38 209.4 6.3 84 1-84 65-148 (471)
8 1m22_A Peptide amidase, PAM; e 100.0 5E-34 1.7E-38 210.5 4.8 83 1-84 85-172 (503)
9 3ppm_A Fatty-acid amide hydrol 100.0 2.2E-33 7.6E-38 210.2 5.6 84 1-84 135-218 (573)
10 1o9p_A Malonamidase E2; malona 100.0 5.7E-32 2E-36 195.9 6.1 78 1-84 61-138 (414)
11 3u85_B Histone-lysine N-methyl 47.3 7.7 0.00026 16.2 0.9 13 68-80 3-15 (21)
12 3hgl_A Effector protein hopab2 42.9 12 0.00041 21.2 1.6 17 28-44 10-26 (85)
13 3mw8_A Uroporphyrinogen-III sy 30.9 39 0.0013 21.5 2.8 27 17-43 3-29 (240)
14 1jg5_A GTP cyclohydrolase I fe 29.4 38 0.0013 19.1 2.2 40 12-51 37-76 (83)
15 3tjy_A Effector protein hopab3 28.3 29 0.00098 19.9 1.6 19 29-47 9-27 (94)
16 1whz_A Hypothetical protein; a 23.4 87 0.003 16.2 3.0 22 24-45 4-25 (70)
17 2dk4_A PRE-mRNA-splicing facto 22.8 43 0.0015 18.6 1.6 18 22-39 24-41 (76)
18 3mjd_A Orotate phosphoribosylt 22.4 47 0.0016 21.8 2.0 21 29-49 154-174 (232)
19 4hp8_A 2-deoxy-D-gluconate 3-d 22.0 68 0.0023 21.2 2.8 9 1-9 1-9 (247)
20 1wz4_A Major surface antigen; 21.5 25 0.00087 15.5 0.4 8 72-79 19-26 (26)
21 3la8_A SMU.1229, putative puri 20.2 67 0.0023 22.2 2.5 25 27-51 226-250 (303)
22 3ozb_A Methylthioadenosine pho 20.2 1.3E+02 0.0045 19.9 3.9 22 31-52 186-207 (259)
No 1
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=7e-35 Score=213.84 Aligned_cols=84 Identities=29% Similarity=0.423 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..++|.+||.++||||+.|+|||||||
T Consensus 66 vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 145 (476)
T 2gi3_A 66 IKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGG 145 (476)
T ss_dssp EETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 146 sAaA 149 (476)
T 2gi3_A 146 SAAA 149 (476)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=9.3e-35 Score=213.67 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..++|.+||.++||||+.++|||||||
T Consensus 78 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgG 157 (485)
T 3ip4_A 78 IKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG 157 (485)
T ss_dssp EETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EEcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 158 sAaa 161 (485)
T 3ip4_A 158 SAAA 161 (485)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 3
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.1e-34 Score=215.13 Aligned_cols=84 Identities=32% Similarity=0.431 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++|||||+||+|+..++|.+||+++||||+.|+|||||||
T Consensus 95 vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 174 (521)
T 3a1k_A 95 IKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGG 174 (521)
T ss_dssp EETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHH
T ss_pred EEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 175 SAAA 178 (521)
T 3a1k_A 175 SAAL 178 (521)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=5.3e-34 Score=209.64 Aligned_cols=84 Identities=31% Similarity=0.440 Sum_probs=81.9
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..++|.+||+++||||+.++|||||||
T Consensus 71 vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 150 (478)
T 3h0l_A 71 VKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGG 150 (478)
T ss_dssp EETTBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHH
T ss_pred EEcCccCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 151 saaa 154 (478)
T 3h0l_A 151 SAAS 154 (478)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=2.5e-34 Score=211.63 Aligned_cols=84 Identities=33% Similarity=0.469 Sum_probs=81.9
Q ss_pred CCCcc-ccCCccCCCCccccc--CCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCC
Q psy178 1 MGGMV-FVDGLSNATGALKLK--GRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGS 77 (84)
Q Consensus 1 ~kD~~-~~~G~~tt~G~~~~~--~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGS 77 (84)
|||+| +++|++||+|+..+. ++++.+|+++|+||+++|||++||||||||+++..++|.+||.++||||+.|+||||
T Consensus 71 vKD~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGS 150 (493)
T 3a2q_A 71 LKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGS 150 (493)
T ss_dssp EESSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSS
T ss_pred EecCCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcC
Confidence 69999 999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhcC
Q psy178 78 SGGEVLK 84 (84)
Q Consensus 78 S~Gsaal 84 (84)
||||||+
T Consensus 151 SgGsAAA 157 (493)
T 3a2q_A 151 SGGSGAA 157 (493)
T ss_dssp SHHHHHH
T ss_pred cHHHHHH
Confidence 9999973
No 6
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=5.4e-34 Score=207.46 Aligned_cols=82 Identities=34% Similarity=0.453 Sum_probs=78.9
Q ss_pred CCCccccCCccCCCCcccccCCCC-CCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCCh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKA-SEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSG 79 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~-~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~ 79 (84)
|||+|+++|++||+|+..| +++ .+|+++|+||+++|||++||||||||+++..++|.+||.++||||+.++||||||
T Consensus 72 vKD~~~v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 149 (434)
T 2dc0_A 72 VKDLFPVKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSG 149 (434)
T ss_dssp EETTSCBTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSH
T ss_pred EEeccccCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHH
Confidence 6999999999999999999 566 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy178 80 GEVLK 84 (84)
Q Consensus 80 Gsaal 84 (84)
||||+
T Consensus 150 GsAaa 154 (434)
T 2dc0_A 150 GSAVA 154 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99973
No 7
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=5.4e-34 Score=209.38 Aligned_cols=84 Identities=31% Similarity=0.388 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|+||+++|||++||||||||+++..++|.+||.++||||+.++|||||||
T Consensus 65 vKD~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 144 (471)
T 3kfu_E 65 VKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGG 144 (471)
T ss_dssp EETTBCCTTSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EECCcccCCccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
||++
T Consensus 145 saaa 148 (471)
T 3kfu_E 145 SAAA 148 (471)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=5e-34 Score=210.53 Aligned_cols=83 Identities=34% Similarity=0.519 Sum_probs=80.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccc-----cCCCCCCCCCcCCCCCCCCCCCC
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCT-----SWETTNYITGKTVNPYDFSRTPG 75 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~g~~~NP~~~~~~~G 75 (84)
|||+|+++|++||+|+..+.++++ +|+++|+||+++|||++||||||||++ +..++|.+||.++||||+.++||
T Consensus 85 vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pG 163 (503)
T 1m22_A 85 LKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPC 163 (503)
T ss_dssp EETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCC
T ss_pred eecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 699999999999999999999999 999999999999999999999999998 67899999999999999999999
Q ss_pred CCChhhhcC
Q psy178 76 GSSGGEVLK 84 (84)
Q Consensus 76 GSS~Gsaal 84 (84)
||||||||+
T Consensus 164 GSSgGsAaA 172 (503)
T 1m22_A 164 GSSSGSAVA 172 (503)
T ss_dssp SSSHHHHHH
T ss_pred ccHHHHHHH
Confidence 999999973
No 9
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.98 E-value=2.2e-33 Score=210.21 Aligned_cols=84 Identities=33% Similarity=0.559 Sum_probs=82.0
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..+.++++.+|+++|++|+++|||++||||||||+|+.++.|+.||+|+||||+.++|||||||
T Consensus 135 vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 214 (573)
T 3ppm_A 135 LKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGG 214 (573)
T ss_dssp EETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHH
T ss_pred EEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 215 saaa 218 (573)
T 3ppm_A 215 EGAL 218 (573)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 10
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.97 E-value=5.7e-32 Score=195.94 Aligned_cols=78 Identities=24% Similarity=0.461 Sum_probs=74.2
Q ss_pred CCCccccCCccCCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCcccccCCCCCCCCCcCCCCCCCCCCCCCCChh
Q psy178 1 MGGMVFVDGLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSSGG 80 (84)
Q Consensus 1 ~kD~~~~~G~~tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~NP~~~~~~~GGSS~G 80 (84)
|||+|+++|++||+|+..|.++++.+|+++|+||+++|||++||||||||++ .|+ |.++||||+.|+|||||||
T Consensus 61 vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgG 134 (414)
T 1o9p_A 61 IKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSG 134 (414)
T ss_dssp EETTBCCSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHH
T ss_pred EEcccccCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHH
Confidence 6999999999999999999999999999999999999999999999999998 344 9999999999999999999
Q ss_pred hhcC
Q psy178 81 EVLK 84 (84)
Q Consensus 81 saal 84 (84)
|||+
T Consensus 135 sAaa 138 (414)
T 1o9p_A 135 SAAA 138 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9973
No 11
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=47.33 E-value=7.7 Score=16.25 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=7.9
Q ss_pred CCCCCCCCCCChh
Q psy178 68 YDFSRTPGGSSGG 80 (84)
Q Consensus 68 ~~~~~~~GGSS~G 80 (84)
|.....||||+++
T Consensus 3 wrfparpg~s~~s 15 (21)
T 3u85_B 3 WRFPARPGTTGGG 15 (26)
T ss_pred cccccCCCcccCC
Confidence 4445567777654
No 12
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=42.92 E-value=12 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHHHHHHCCCeeEEe
Q psy178 28 APIVKILREAGAIPLCN 44 (84)
Q Consensus 28 a~~v~~L~~aGai~~gk 44 (84)
.-+|++|+++||-+-..
T Consensus 10 n~IVqQLv~AGADLA~v 26 (85)
T 3hgl_A 10 NSIVQQLVSEGADISHT 26 (85)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 35899999999987553
No 13
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=30.86 E-value=39 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=19.8
Q ss_pred ccccCCCCCCcHHHHHHHHHCCCeeEE
Q psy178 17 LKLKGRKASEDAPIVKILREAGAIPLC 43 (84)
Q Consensus 17 ~~~~~~~~~~~a~~v~~L~~aGai~~g 43 (84)
+.+..++......++++|+++|+.++-
T Consensus 3 ~vlvtRp~~~~~~l~~~L~~~G~~~~~ 29 (240)
T 3mw8_A 3 KLLLTRPEGKNAAMASALDALAIPYLV 29 (240)
T ss_dssp CEEECSCTTSCHHHHHHHHHHTCCEEE
T ss_pred EEEEeCChHHhHHHHHHHHHCCCcEEE
Confidence 444455566678899999999987754
No 14
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=29.38 E-value=38 Score=19.07 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=27.5
Q ss_pred CCCCcccccCCCCCCcHHHHHHHHHCCCeeEEecCcCccc
Q psy178 12 NATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELC 51 (84)
Q Consensus 12 tt~G~~~~~~~~~~~~a~~v~~L~~aGai~~gkt~~~e~~ 51 (84)
+..|..+++-+.......+..+|...|..++..|-..|-.
T Consensus 37 ~~lgn~f~ey~v~dpPr~VLnKLE~~G~rVvsmtGvgqtl 76 (83)
T 1jg5_A 37 RVLGNNFYEYYVNDPPRIVLDKLECRGFRVLSMTGVGQTL 76 (83)
T ss_dssp CCTTCSSCEEEESSCHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred hhhccccEEEEcCCChHHHHHHHhccCeEEEEEecCCceE
Confidence 3445544433344445668899999999999999877754
No 15
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=28.28 E-value=29 Score=19.91 Aligned_cols=19 Identities=37% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHCCCeeEEecCc
Q psy178 29 PIVKILREAGAIPLCNTNV 47 (84)
Q Consensus 29 ~~v~~L~~aGai~~gkt~~ 47 (84)
-+||+|.++||-+-..-+|
T Consensus 9 ~IVqQlv~aGadLa~~rtm 27 (94)
T 3tjy_A 9 RIVQQLVEAGADLANIRTM 27 (94)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHH
Confidence 4799999999987664444
No 16
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.44 E-value=87 Score=16.16 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHCCCeeEEec
Q psy178 24 ASEDAPIVKILREAGAIPLCNT 45 (84)
Q Consensus 24 ~~~~a~~v~~L~~aGai~~gkt 45 (84)
|-.-..+++.|+++|.++.-..
T Consensus 4 p~~~~elik~L~~~G~~~~r~~ 25 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAK 25 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEeCCC
Confidence 4456789999999999987433
No 17
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=22.80 E-value=43 Score=18.58 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCCCCcHHHHHHHHHCCC
Q psy178 22 RKASEDAPIVKILREAGA 39 (84)
Q Consensus 22 ~~~~~~a~~v~~L~~aGa 39 (84)
.++..|..|+++||+.|-
T Consensus 24 ~v~~~d~eV~~~LR~lgE 41 (76)
T 2dk4_A 24 PMTLSRQEVIRRLRERGE 41 (76)
T ss_dssp SCCSCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHcCC
Confidence 356788999999999883
No 18
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=22.43 E-value=47 Score=21.85 Aligned_cols=21 Identities=10% Similarity=-0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCeeEEecCcCc
Q psy178 29 PIVKILREAGAIPLCNTNVPE 49 (84)
Q Consensus 29 ~~v~~L~~aGai~~gkt~~~e 49 (84)
.+++.|+++||.+++-..+=+
T Consensus 154 ~a~~~L~~~Ga~vv~v~vlvd 174 (232)
T 3mjd_A 154 ESYNKLKIINAKIAGVVLSID 174 (232)
T ss_dssp HHHHHHHTTTCEEEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEEEE
Confidence 467899999999988655433
No 19
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=21.96 E-value=68 Score=21.18 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=5.9
Q ss_pred CCCccccCC
Q psy178 1 MGGMVFVDG 9 (84)
Q Consensus 1 ~kD~~~~~G 9 (84)
|||.|+++|
T Consensus 1 M~n~f~L~G 9 (247)
T 4hp8_A 1 MKNPFSLEG 9 (247)
T ss_dssp --CTTCCTT
T ss_pred CcCCcCCCC
Confidence 688888888
No 20
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=21.49 E-value=25 Score=15.51 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.0
Q ss_pred CCCCCCCh
Q psy178 72 RTPGGSSG 79 (84)
Q Consensus 72 ~~~GGSS~ 79 (84)
.-+||||+
T Consensus 19 ~pAGGSs~ 26 (26)
T 1wz4_A 19 FPAGGXXX 26 (26)
T ss_dssp CCSCC---
T ss_pred cCCcccCC
Confidence 35677764
No 21
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=20.24 E-value=67 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.0
Q ss_pred cHHHHHHHHHCCCeeEEecCcCccc
Q psy178 27 DAPIVKILREAGAIPLCNTNVPELC 51 (84)
Q Consensus 27 ~a~~v~~L~~aGai~~gkt~~~e~~ 51 (84)
+..=++.|+..||.++|-+.+||.-
T Consensus 226 T~AE~r~~r~~GadaVgMst~pEa~ 250 (303)
T 3la8_A 226 TPAEIRAFKTLGADAVGMSTVPEVI 250 (303)
T ss_dssp CHHHHHHHHHTTCSEEESSSHHHHH
T ss_pred CHHHHHHHHHcCCCEEeccHHHHHH
Confidence 3333678888899999999888865
No 22
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=20.17 E-value=1.3e+02 Score=19.93 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHHCCCeeEEecCcCcccc
Q psy178 31 VKILREAGAIPLCNTNVPELCT 52 (84)
Q Consensus 31 v~~L~~aGai~~gkt~~~e~~~ 52 (84)
++.++..|+..++-+.+||...
T Consensus 186 ~~~~~~~GadaVgMe~~~ea~v 207 (259)
T 3ozb_A 186 IARLERDGNDIVGMTGMPEAAL 207 (259)
T ss_dssp HHHHHHTTCSEEESSSTTHHHH
T ss_pred HHHHHHcCCEEEcCcHHHHHHH
Confidence 5788888999999999988763
Done!