RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy178
(84 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 109 bits (274), Expect = 6e-30
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 9 GLSNATGALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
G + G +G + D +V++L+ GA+P +TNVP+ S++ +N + G+T+NP+
Sbjct: 143 GHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPW 202
Query: 69 DFSRTPGGSSGGE 81
S++PGGSSGGE
Sbjct: 203 KSSKSPGGSSGGE 215
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 81.9 bits (203), Expect = 3e-20
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 16 ALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPG 75
+K G +A DA V+ +R AG + L TN PE+ T G T NP++ R+ G
Sbjct: 89 GMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVG 148
Query: 76 GSSGG 80
GSSGG
Sbjct: 149 GSSGG 153
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 60.6 bits (148), Expect = 8e-13
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 19 LKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSS 78
+G + DAP+V +L+ AGA + T + T+NP++ +PGG+S
Sbjct: 79 YRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS------RDPTATLNPHNTGHSPGGAS 132
Query: 79 GG 80
G
Sbjct: 133 SG 134
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 59.9 bits (146), Expect = 2e-12
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 15 GALKLKGRKASEDAPIVKILREAGAIPLCNTNVPELC--TSWETTNYIT---GKTVNPYD 69
G+L L+G + +DA +V+ LR+AGA+ L TN+ E ++ + + G+T NPY
Sbjct: 99 GSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYR 157
Query: 70 FSRTPGGSSGG 80
S +P GSS G
Sbjct: 158 ISHSPCGSSSG 168
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 56.9 bits (138), Expect = 2e-11
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 19 LKGRKASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPYDFSRTPGGSS 78
++G S DA +V L AGA +LC S + +G NP+D R GGSS
Sbjct: 113 VEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSS 172
Query: 79 GG 80
GG
Sbjct: 173 GG 174
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 53.0 bits (128), Expect = 4e-10
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 26 EDAPIVKILREAGAIPLCNTNVPELC--TSWETTNYITGKTVNPYDFSRTPGGSSGG 80
E+A V+ LREAGA+ TN+ E+ + E G N D SR GGSSGG
Sbjct: 96 EEARAVRRLREAGALLFAKTNMHEIALGITGENPWT--GPVRNAVDPSRQAGGSSGG 150
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 52.5 bits (127), Expect = 6e-10
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELC--TSWETTNYITGKTVNPYDFSRTPGGSSGG 80
+A V L+ GA+ L TN+ E +S E + + T NP+D R PGGSSGG
Sbjct: 91 EATAVARLKALGALVLGKTNLDEFGMGSSTEHSAF--FPTKNPFDPDRVPGGSSGG 144
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 52.5 bits (127), Expect = 7e-10
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELC--TSWETTNYITGKTVNPYDFSRTPGGSSGG 80
++ +++ L + A+ + N+ E S ET+ + KTVNP+D PGGSSGG
Sbjct: 104 ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYF--KKTVNPFDHKAVPGGSSGG 157
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 52.5 bits (127), Expect = 7e-10
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELC--TSWETTNYITGKTVNPYDFSRTPGGSSGG 80
DA +++ L++AGA+ + TN+ E +S E + + T NP+D R PGGSSGG
Sbjct: 97 DATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAF--FPTKNPWDLERVPGGSSGG 150
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 52.2 bits (126), Expect = 8e-10
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 27 DAPIVKILREAGAIPLCNTNVPELC--TSWETTNYITGKTVNPYDFSRTPGGSSGG 80
DA +VK ++EAG + + N+ E +S E + + T NP+D R PGGSSGG
Sbjct: 92 DATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAF--FPTRNPWDLERVPGGSSGG 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.019
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 32/95 (33%)
Query: 10 LSNATGALKLKGRKASEDAPIVKILREAG--AIPLCNTN----------------VPELC 51
L A+ + +D + A IP+ +T V +
Sbjct: 432 LVPASDLIN-------KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 52 TS---WETTNYITGKTVNPYDFSRTPGGSSGGEVL 83
WETT + DF PGG+SG VL
Sbjct: 485 RLPVKWETTTQFKATHI--LDFG--PGGASGLGVL 515
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.41
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 10 LSNATGALKLKGRKASEDAPIVKI 33
L +LKL A + AP + I
Sbjct: 22 LKKLQASLKLY---ADDSAPALAI 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 26.9 bits (60), Expect = 0.71
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 10 LSNATGALKLKGRKASEDAPIVKILREAGAIPL 42
+AT + S+ ++ + +AGA+P
Sbjct: 29 QLSATRKF---SQILSDGNEQIQAVIDAGALPA 58
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 30 IVKILREAGA 39
IV +LREAGA
Sbjct: 357 IVTMLREAGA 366
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 21 GRKASEDAPIVKILREAGA 39
G+K S A +VK L +A A
Sbjct: 207 GQKRSTVAQLVKRLTDADA 225
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 21 GRKASEDAPIVKILREAGA 39
G+KAS + +V+ L E GA
Sbjct: 199 GQKASTISNVVRKLEEHGA 217
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 26.1 bits (58), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 21 GRKASEDAPIVKILREAGA 39
G+K S A I+ LR+ GA
Sbjct: 212 GQKKSAIARIIDKLRQYGA 230
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 21 GRKASEDAPIVKILREAGA 39
G+K S A +V+ LR+ A
Sbjct: 199 GQKQSTVAGVVETLRQHDA 217
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 26.1 bits (58), Expect = 1.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 21 GRKASEDAPIVKILREAGA 39
G+KAS A +V +E GA
Sbjct: 200 GQKASSVAQVVTNFQERGA 218
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 25.4 bits (56), Expect = 2.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 23 KASEDAPIVKILREAGAIP 41
KAS + ++R+AGA+P
Sbjct: 80 KASTGQMLTDLIRDAGAVP 98
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 25.6 bits (57), Expect = 2.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 30 IVKILREAGA 39
I+++ REAGA
Sbjct: 378 IIEMAREAGA 387
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 25.2 bits (55), Expect = 2.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 12 NATGALKLKGRKASEDAPIVKILREAGAIP 41
+ G L+ + + +ILRE +
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQ 266
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
structu genomics, PSI, protein structure initiative;
2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Length = 369
Score = 25.4 bits (56), Expect = 2.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 KASEDAPIVKILREAGAIP 41
K P+V +L IP
Sbjct: 92 KNEAGVPMVNLLHNENIIP 110
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A
3dfn_A 3dfo_A 3dfp_A ...
Length = 341
Score = 25.4 bits (56), Expect = 2.8
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 23 KASEDAPIVKILREAGAIP 41
KA + P ++++ G +
Sbjct: 83 KADDGRPFPQVIKSKGGVV 101
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 25.1 bits (55), Expect = 2.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 KASEDAPIVKILREAGAIP 41
KAS + L G +P
Sbjct: 115 KASNGQTFPEYLTARGVVP 133
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, glycolysis, lyase, STRU genomics;
HET: CIT; 2.10A {Babesia bovis}
Length = 379
Score = 25.1 bits (55), Expect = 3.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 23 KASEDAPIVKILREAGAIP 41
+A +V +LR G +P
Sbjct: 104 QAPNGQNMVDLLRAEGILP 122
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 25.0 bits (54), Expect = 3.6
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 12 NATGALKLKGRKASEDAPIVKILREAGAIP-----LCNTNVPEL--CTSWETTN 58
A + + + ++A I+R + + NTN E CTS N
Sbjct: 169 KAAVMV---HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 24.9 bits (54), Expect = 3.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 16 ALKLKGRKASEDAPIVKILREAGAIPLCNTNVPE 49
ALK + A+ A V RE +P PE
Sbjct: 132 ALKGSSQDAATFAKAVATAREVTDLPFILIGTPE 165
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base;
2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Length = 342
Score = 25.0 bits (55), Expect = 3.8
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 23 KASEDAPIVKILREAGAIP 41
+ P+ ++L++ G
Sbjct: 84 TSGSGVPLTELLKKKGIEI 102
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 24.5 bits (53), Expect = 5.0
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 12 NATGALKLKGRKASEDAPIVKILREAGAIPL 42
A + + + ++A I+R +
Sbjct: 33 KAAVMV---HQLSKKEASRHAIMRSPQMVSA 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 24.5 bits (53), Expect = 5.3
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 12 NATGALKLKGRKASEDAPIVKILREAGAIP 41
+ G L+ + + +ILRE +
Sbjct: 353 SGGGILRNVSSLIATNEDHRQILRENNCLQ 382
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
resistanc hydrolase, metal binding protein; 1.90A
{Pseudomonas aeruginosa}
Length = 246
Score = 24.4 bits (53), Expect = 5.5
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 2 GGMVFVDGLSNATGALKLKGRKASEDAPIVKIL 34
G +V V G L A P +
Sbjct: 40 GTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVA 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.397
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,324,252
Number of extensions: 65813
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 32
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)