RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy178
         (84 letters)



>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain
          {Escherichia coli, HPII [TaxId: 562]}
          Length = 156

 Score = 25.8 bits (56), Expect = 0.48
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 10/63 (15%)

Query: 19 LKGRK----------ASEDAPIVKILREAGAIPLCNTNVPELCTSWETTNYITGKTVNPY 68
          +KGR           +++   I+K L+  G       +     T+ + T      T    
Sbjct: 1  VKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGA 60

Query: 69 DFS 71
             
Sbjct: 61 PSL 63


>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 243

 Score = 24.3 bits (52), Expect = 2.4
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 39  AIPLCNTNVPELCTSWETTNYITG 62
           A+   N ++ +   S     Y+T 
Sbjct: 196 AVRAENPDIQQFECSVFNGVYVTK 219


>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase
          {Escherichia coli [TaxId: 562]}
          Length = 221

 Score = 23.2 bits (49), Expect = 4.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 17 LKLKGRKASEDAPIVKILREA 37
          +++   +A  D  +V +L EA
Sbjct: 33 VRVGLYEAVRDGMVVNLLLEA 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 319,341
Number of extensions: 12490
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)