BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17800
         (389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BZK|A Chain A, Structural Studies On The Effects Of The Deletion In The
           Red Cell Anion Exchanger (Band3, Ae1) Associated With
           South East Asian Ovalocytosis
          Length = 43

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query: 141 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADK 182
           R+P+Y SDITD  + Q +AA IF+YFAALS AITFGGL+ +K
Sbjct: 2   RYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLGEK 43



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 93  RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGR 133
           R+P+Y SDITD  + Q +AA IF+YFAALS AITFGGL+G 
Sbjct: 2   RYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLGE 42


>pdb|1BNX|A Chain A, Structural Studies On The Effects Of The Deletion In The
           Red Cell Anion Exchanger (Band3, Ae1) Associated With
           South East Asian Ovalocytosis
          Length = 34

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 9/42 (21%)

Query: 141 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADK 182
           R+P+Y SDITD          IF+YFAALS AITFGGL+ +K
Sbjct: 2   RYPYYLSDITD---------VIFIYFAALSPAITFGGLLGEK 34



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 9/41 (21%)

Query: 93  RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGR 133
           R+P+Y SDITD          IF+YFAALS AITFGGL+G 
Sbjct: 2   RYPYYLSDITD---------VIFIYFAALSPAITFGGLLGE 33


>pdb|1HYN|P Chain P, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|Q Chain Q, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|R Chain R, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|S Chain S, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
          Length = 379

 Score = 34.7 bits (78), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 3   RRDLLSAINEFLDCSIVLPPGDW-ERKALLPFRELKAKNEAIRRR 46
           R +LL ++  FLDCS+VLPP D    +ALL    +  + E +RRR
Sbjct: 304 RGELLHSLEGFLDCSLVLPPTDAPSEQALLSL--VPVQRELLRRR 346


>pdb|1BTQ|A Chain A, The Solution Structures Of The First And Second
           Transmembrane-Spanning Segments Of Band 3
 pdb|1BTR|A Chain A, The Solution Structures Of The First And Second
           Transmembrane-Spanning Segments Of Band 3
          Length = 22

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 109 CIAASIFMYFAALSGAITFG 128
            +AA IF+YFAALS AITFG
Sbjct: 2   VLAAVIFIYFAALSPAITFG 21



 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 157 CIAASIFMYFAALSGAITFG 176
            +AA IF+YFAALS AITFG
Sbjct: 2   VLAAVIFIYFAALSPAITFG 21


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,538,302
Number of Sequences: 62578
Number of extensions: 335098
Number of successful extensions: 702
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 8
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)