Query psy17800
Match_columns 389
No_of_seqs 212 out of 496
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:25:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00834 ae anion exchange pr 100.0 3.3E-99 7E-104 818.8 25.7 340 1-389 260-633 (900)
2 KOG1172|consensus 100.0 1E-96 2E-101 784.6 25.4 336 1-389 255-612 (876)
3 PF00955 HCO3_cotransp: HCO3- 100.0 1.4E-85 3.1E-90 681.4 3.8 267 75-389 1-317 (510)
4 COG0659 SUL1 Sulfate permease 97.7 0.00052 1.1E-08 73.7 14.5 182 169-375 35-220 (554)
5 TIGR00834 ae anion exchange pr 97.7 2.7E-05 5.9E-10 86.9 3.6 83 68-156 279-370 (900)
6 KOG1172|consensus 97.6 1.9E-05 4.1E-10 86.9 0.4 83 68-156 274-361 (876)
7 PF00955 HCO3_cotransp: HCO3- 96.3 0.00094 2E-08 71.0 -0.1 28 125-156 7-34 (510)
8 PRK11660 putative transporter; 96.1 0.083 1.8E-06 56.8 13.1 97 192-294 61-157 (568)
9 TIGR00815 sulP high affinity s 95.9 0.13 2.8E-06 55.3 13.7 130 160-295 20-152 (563)
10 TIGR03173 pbuX xanthine permea 92.0 6.1 0.00013 40.7 15.6 180 160-372 4-190 (406)
11 TIGR00801 ncs2 uracil-xanthine 92.0 7.7 0.00017 40.3 16.4 186 160-372 14-206 (415)
12 KOG0236|consensus 88.4 3.8 8.2E-05 45.4 11.1 105 192-296 112-222 (665)
13 PF00860 Xan_ur_permease: Perm 87.9 6 0.00013 40.5 11.5 193 160-377 10-208 (389)
14 PRK11412 putative uracil/xanth 87.0 22 0.00047 37.5 15.2 185 160-368 17-210 (433)
15 TIGR03616 RutG pyrimidine util 69.5 1.5E+02 0.0033 31.1 15.9 117 160-290 39-164 (429)
16 PRK10720 uracil transporter; P 64.6 1.9E+02 0.0041 30.3 16.7 172 160-372 23-199 (428)
17 PF13792 Sulfate_tra_GLY: Sulf 55.7 8.5 0.00018 31.5 2.0 51 168-224 30-80 (84)
18 COG2233 UraA Xanthine/uracil p 55.4 1.6E+02 0.0035 31.4 11.9 201 160-386 25-238 (451)
19 TIGR00870 trp transient-recept 43.8 3.4E+02 0.0074 30.1 12.8 54 318-371 470-524 (743)
20 PF06570 DUF1129: Protein of u 39.0 3.3E+02 0.0071 25.4 10.3 27 178-204 102-128 (206)
21 PF05399 EVI2A: Ectropic viral 37.2 54 0.0012 31.6 4.5 39 318-356 141-179 (227)
22 PF07168 Ureide_permease: Urei 33.9 54 0.0012 33.4 4.2 46 160-205 32-84 (336)
23 PF02109 DAD: DAD family; Int 31.8 1.1E+02 0.0024 26.6 5.2 54 316-369 53-110 (112)
24 PF13172 PepSY_TM_1: PepSY-ass 31.6 50 0.0011 22.1 2.5 22 241-262 8-29 (34)
25 KOG3312|consensus 29.4 30 0.00064 31.7 1.4 21 91-111 114-134 (186)
26 TIGR02865 spore_II_E stage II 23.6 2.6E+02 0.0056 31.7 7.7 78 265-361 113-190 (764)
No 1
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=100.00 E-value=3.3e-99 Score=818.81 Aligned_cols=340 Identities=49% Similarity=0.889 Sum_probs=305.1
Q ss_pred CChhhHHHHHhhhhccceeeCCCCCCCcCCCCcchhhhhHHHHHHhcccccch---HHHHHhhhc-CCCCCCCCCCCCCC
Q psy17800 1 MERRDLLSAINEFLDCSIVLPPGDWERKALLPFRELKAKNEAIRRRQSRTQDA---AEAQKLLLL-GEDGDKKPPGDDPL 76 (389)
Q Consensus 1 ~~r~dll~~ideFld~~~vlpPg~w~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~~~~-~~~~~~~~~~~dpl 76 (389)
++++||+++|+|||||||||||||||++++|+ ++.+.|++++|||..+.... .+.++.... ..+...+++++||+
T Consensus 260 ~s~eeL~~~I~efld~~~VlpPg~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 338 (900)
T TIGR00834 260 DDRDDLLAGIDEFLDCSIVLPPGEWDPEIRLE-PPAPLQRELLRKRYEPSTVRPENPTMGGDTEPEDGGSEGPHGDDDPL 338 (900)
T ss_pred CCHHHHHHHHHHHhccceecCCCCCChhhhcC-CCccCCHHHHhhccccccccccccccCCCCcccccCCCCCCCCCchh
Confidence 47999999999999999999999999999998 67888999998886432110 001111100 01112234568899
Q ss_pred cccCCCCccchhhhhhhCCCCCcccccccccchhhhhhhhHHhhhhcccccccccccccccccccCCccccccccccccc
Q psy17800 77 RRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGRDLDQHDRRFPFYASDITDGINCQ 156 (389)
Q Consensus 77 ~r~~~p~~Gi~~DikrR~P~Y~sD~~dg~~~~~~~~~~~~~f~~l~pai~Fggl~~~~~~d~~rr~p~Y~SD~~dg~~~~ 156 (389)
.|+++||||+++|+|||+|+|+|||+||++.|+++
T Consensus 339 ~rtg~~f~Gli~DikRR~p~Y~SD~tDa~~~q~la--------------------------------------------- 373 (900)
T TIGR00834 339 QRTGRPFGGLIRDIKRRYPHYLSDFTDALNPQCLA--------------------------------------------- 373 (900)
T ss_pred hhcCCccchHHHHHHhhcccchHHHhhhhcchhHH---------------------------------------------
Confidence 99999999999999999999999999999988877
Q ss_pred chhhHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHhhcCC
Q psy17800 157 CIAASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNI 236 (389)
Q Consensus 157 ~l~a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~~~~~ 236 (389)
|++||||||++||||||++|+++|+|.|||+|+|+|||+||++||+||||||+|+|+|||+++|++++|+||+++++
T Consensus 374 ---a~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~ 450 (900)
T TIGR00834 374 ---AVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGL 450 (900)
T ss_pred ---HHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCC----CCCC---
Q psy17800 237 EYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLET----LPLP--- 309 (389)
Q Consensus 237 ~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y----~~~~--- 309 (389)
||+++|+|||+|+++||+++|++|+|.+|||+||||||||++|||+||||||+++++++|+.||+..+| |..+
T Consensus 451 ~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~ 530 (900)
T TIGR00834 451 EYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQ 530 (900)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987665 2100
Q ss_pred ----------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhh
Q psy17800 310 ----------------------TKENQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSL 367 (389)
Q Consensus 310 ----------------------~~~~~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i 367 (389)
.+..+||++|+|++|++|||++|++||+||+|+||++++|++|+|||+||||++|+++
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v 610 (900)
T TIGR00834 531 GPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLV 610 (900)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHH
Confidence 0124599999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-ccCcccccCCCCCCCCC
Q psy17800 368 DYVVP-TYTEKLKVPEGLSPSNP 389 (389)
Q Consensus 368 ~~~~~-~~~~kL~vp~~f~pT~~ 389 (389)
+|+++ ++++||+||++|+||+|
T Consensus 611 ~~~~~~v~~~kl~Vp~~f~pt~p 633 (900)
T TIGR00834 611 DIFIGDTYTQKLSVPSGLKVTNP 633 (900)
T ss_pred HHHhccCcccccCCCCCcCCCCC
Confidence 99988 99999999999999975
No 2
>KOG1172|consensus
Probab=100.00 E-value=1e-96 Score=784.56 Aligned_cols=336 Identities=42% Similarity=0.799 Sum_probs=296.1
Q ss_pred CChhhHHHHHhhhhccceeeCCCCCCCcCCCCcchhhhhHHHHHHhccccc--chH--HHHHhhhcCCCCCCCCCCCCCC
Q psy17800 1 MERRDLLSAINEFLDCSIVLPPGDWERKALLPFRELKAKNEAIRRRQSRTQ--DAA--EAQKLLLLGEDGDKKPPGDDPL 76 (389)
Q Consensus 1 ~~r~dll~~ideFld~~~vlpPg~w~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~--~~~~~~~~~~~~~~~~~~~dpl 76 (389)
+||+||++|||||||+++||||||||+++++. ++++ .+..+||++... ... +..+.+ ..+......+++++
T Consensus 255 ~~~~dl~~~i~~fLd~~~vLppg~~d~~iri~--~p~~-~~~~~~r~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~ 329 (876)
T KOG1172|consen 255 KDRDDLLHGIDEFLDEVTVLPPGEWDPRIRIE--PPKK-LPSQKKRKEITRTFATGFMNTAGEL--GEEENGAAMEEEEL 329 (876)
T ss_pred hCHHHHHHHHHHHhhcCcccCCcccCCceecc--Cccc-ccchHhhhhhccccccccccccccc--ccccccccccCccc
Confidence 58999999999999999999999999997774 2222 223344544322 111 000111 01111122567889
Q ss_pred cccCCCCccchhhhhhhCCCCCcccccccccchhhhhhhhHHhhhhcccccccccccccccccccCCccccccccccccc
Q psy17800 77 RRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGRDLDQHDRRFPFYASDITDGINCQ 156 (389)
Q Consensus 77 ~r~~~p~~Gi~~DikrR~P~Y~sD~~dg~~~~~~~~~~~~~f~~l~pai~Fggl~~~~~~d~~rr~p~Y~SD~~dg~~~~ 156 (389)
.|++++|||+++|+|||+|+|+|||+||++.|+++
T Consensus 330 ~~tgrlFgGl~~DikrR~p~Y~SD~~Da~~~~~la--------------------------------------------- 364 (876)
T KOG1172|consen 330 QRTGRLFGGLVLDIKRRLPHYKSDFRDAFNIQCLA--------------------------------------------- 364 (876)
T ss_pred ccccccchhHHHHHHhhcCCChHHHHHHhccccch---------------------------------------------
Confidence 99999999999999999999999999999998877
Q ss_pred chhhHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHhhcCC
Q psy17800 157 CIAASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNI 236 (389)
Q Consensus 157 ~l~a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~~~~~ 236 (389)
+++|+||||++|+||||++|+++|+|.+||+|+|+|||+||++||+||||||+|||+|||++|||+++|+||+++++
T Consensus 365 ---~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~ 441 (876)
T KOG1172|consen 365 ---ATLFIYFACLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL 441 (876)
T ss_pred ---HHHHHHHHhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCC------------
Q psy17800 237 EYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLE------------ 304 (389)
Q Consensus 237 ~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~------------ 304 (389)
|||+||+|||+|++++|+++|++|+|.+|+|+||||||+|++|||+||||||+++++++|+.||++.+
T Consensus 442 dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~ 521 (876)
T KOG1172|consen 442 DYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGP 521 (876)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred CCCC-----CCCCCCchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc-ccCccc
Q psy17800 305 TLPL-----PTKENQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP-TYTEKL 378 (389)
Q Consensus 305 y~~~-----~~~~~~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~-~~~~kL 378 (389)
.|.+ ....+.||++|+|++|++||+++|++||+||+|+||++++|++|||||+|+||++|+++||+.+ ++++||
T Consensus 522 ~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl 601 (876)
T KOG1172|consen 522 ECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL 601 (876)
T ss_pred cccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc
Confidence 2211 1122349999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ccCCCCCCCCC
Q psy17800 379 KVPEGLSPSNP 389 (389)
Q Consensus 379 ~vp~~f~pT~~ 389 (389)
++|..++||+|
T Consensus 602 ~vp~~~~~t~~ 612 (876)
T KOG1172|consen 602 PVPSVFPPTWP 612 (876)
T ss_pred ccCcCCCCCCc
Confidence 99999999975
No 3
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=100.00 E-value=1.4e-85 Score=681.43 Aligned_cols=267 Identities=48% Similarity=0.906 Sum_probs=52.6
Q ss_pred CCcccCCCCccchhhhhhhCCCCCcccccccccchhhhhhhhHHhhhhcccccccccccccccccccCCccccccccccc
Q psy17800 75 PLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGRDLDQHDRRFPFYASDITDGIN 154 (389)
Q Consensus 75 pl~r~~~p~~Gi~~DikrR~P~Y~sD~~dg~~~~~~~~~~~~~f~~l~pai~Fggl~~~~~~d~~rr~p~Y~SD~~dg~~ 154 (389)
|+.|+++||||+++|+|||+|+|+|||+||++.|+++
T Consensus 1 ~l~rtg~~fgGl~~Dikrr~p~Y~SD~~D~~~~~~~~------------------------------------------- 37 (510)
T PF00955_consen 1 PLQRTGRLFGGLINDIKRRLPWYWSDFTDGLNLQCLA------------------------------------------- 37 (510)
T ss_dssp --------------------STTCHHHCCSS-SHHHH-------------------------------------------
T ss_pred CCccccccccccccccccccccccccccccccccccc-------------------------------------------
Confidence 6889999999999999999999999999999988877
Q ss_pred ccchhhHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHhhc
Q psy17800 155 CQCIAASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTN 234 (389)
Q Consensus 155 ~~~l~a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~~~ 234 (389)
+++||||||++||||||++|+++|+|.||++|+|+|+++||++||+||||||+|+|+|||+++||+++|++|+++
T Consensus 38 -----~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~ 112 (510)
T PF00955_consen 38 -----ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCKSY 112 (510)
T ss_dssp -----HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred -----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCC-----CCC-
Q psy17800 235 NIEYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLET-----LPL- 308 (389)
Q Consensus 235 ~~~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y-----~~~- 308 (389)
++||+++|+|||+|++++|+++|++|+|.+|||+||||||+|++|||+|||+||+|+|+++|++||+..+| |.|
T Consensus 113 ~~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~ 192 (510)
T PF00955_consen 113 GLDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCT 192 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765 221
Q ss_pred --------------------------------------------CCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy17800 309 --------------------------------------------PTKENQPNTALFCTVLALGTFLIALYLRHFRNSKFL 344 (389)
Q Consensus 309 --------------------------------------------~~~~~~p~~alls~iL~~gTf~la~~L~~fk~s~ff 344 (389)
....++||++|+|++|++|||++|++||+||+|+||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf 272 (510)
T PF00955_consen 193 PPENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYF 272 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Confidence 011357999999999999999999999999999999
Q ss_pred ccchhhhhcchhhHHHHHHHhhhcccccccCcccccCCCCCCCCC
Q psy17800 345 GRSARRALGDFGVPIAIIVMVSLDYVVPTYTEKLKVPEGLSPSNP 389 (389)
Q Consensus 345 ~~~vR~~isDfgv~iaI~~~~~i~~~~~~~~~kL~vp~~f~pT~~ 389 (389)
++++|+++||||+||||++|++++|+++++++||+||++|+||++
T Consensus 273 ~~~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL~vp~~f~pt~~ 317 (510)
T PF00955_consen 273 PRWVREIISDFGVPIAILIMTLVDYLFGVDTPKLNVPSSFKPTSP 317 (510)
T ss_dssp ---------------------------------------------
T ss_pred cHHHHHhHHhhHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999975
No 4
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00052 Score=73.65 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=128.3
Q ss_pred hHH-HHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHH-HHHhhcCCCchhHHHHHH
Q psy17800 169 LSG-AITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLY-NFCKTNNIEYLTMRVYIG 246 (389)
Q Consensus 169 l~P-aItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly-~~c~~~~~~fl~~r~wvg 246 (389)
+.| |++|+..-+ .+..--|.++.++|++|++|+|-|..|.|+||++.+....+- +.. +++ +...+-..
T Consensus 35 alP~ama~a~~aG------v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~-~~g---~~~~~~~t 104 (554)
T COG0659 35 ALPLAMAFAIAAG------VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLV-ETG---LALAFLAT 104 (554)
T ss_pred HhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHH-HHH---HHHHHHHH
Confidence 347 999988544 566678889999999999999999999999999877654332 222 343 44455677
Q ss_pred HHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCC--CCCCCCchhHHHHHHH
Q psy17800 247 IWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPL--PTKENQPNTALFCTVL 324 (389)
Q Consensus 247 iW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~--~~~~~~p~~alls~iL 324 (389)
+-+.++++++..+-...+++|+.|--=-.|-.=|+++-+..-++++...-..+.- +-.. .........-..++++
T Consensus 105 llaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~---~~~~~~~l~~~~~~~~~~~~~l 181 (554)
T COG0659 105 LLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSG---FWAKVSALFTVLLTINLATLLL 181 (554)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---hHHHHHHHHHhcccccHHHHHH
Confidence 8888999999999999999999998888888888888877777766554322100 0000 0000112223556677
Q ss_pred HHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhcccccccC
Q psy17800 325 ALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVPTYT 375 (389)
Q Consensus 325 ~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~~~~ 375 (389)
.+.|+.+-+.+++.+ +..|+ ..++|++.+.+++.++.+.
T Consensus 182 g~~~l~il~~~~~~~--~~~P~----------~liaiv~~t~i~~~~~~~~ 220 (554)
T COG0659 182 GLLTLAILLFLPRLT--PRIPS----------PLIALVLGTLIVWIFPLDS 220 (554)
T ss_pred HHHHHHHHHHccchh--hhCCc----------HHHHHHHHHHHHHHhcCCc
Confidence 777888888777766 45555 7889999999988887443
No 5
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=97.67 E-value=2.7e-05 Score=86.92 Aligned_cols=83 Identities=29% Similarity=0.288 Sum_probs=50.6
Q ss_pred CCCCCCCCCcccCCCCccchhhhhhhCCC-C---Ccccccccccc-h-hhhh---hhhHHhhhhcccccccccccccccc
Q psy17800 68 KKPPGDDPLRRTRKPFGGLINDIKRRFPF-Y---ASDITDGINCQ-C-IAAS---IFMYFAALSGAITFGGLMGRDLDQH 138 (389)
Q Consensus 68 ~~~~~~dpl~r~~~p~~Gi~~DikrR~P~-Y---~sD~~dg~~~~-~-~~~~---~~~~f~~l~pai~Fggl~~~~~~d~ 138 (389)
-||++|||.+|.++|. -+.++.+||-+. . ++|..-+-+.. . .... .-.--+++++ ..|||++ +|+
T Consensus 279 lpPg~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rtg-~~f~Gli----~Di 352 (900)
T TIGR00834 279 LPPGEWDPEIRLEPPA-PLQRELLRKRYEPSTVRPENPTMGGDTEPEDGGSEGPHGDDDPLQRTG-RPFGGLI----RDI 352 (900)
T ss_pred cCCCCCChhhhcCCCc-cCCHHHHhhccccccccccccccCCCCcccccCCCCCCCCCchhhhcC-CccchHH----HHH
Confidence 4899999999999887 666666665432 1 11111010000 0 0000 0011234444 3478887 999
Q ss_pred cccCCccccccccccccc
Q psy17800 139 DRRFPFYASDITDGINCQ 156 (389)
Q Consensus 139 ~rr~p~Y~SD~~dg~~~~ 156 (389)
|||+|+|+|||+||++.|
T Consensus 353 kRR~p~Y~SD~tDa~~~q 370 (900)
T TIGR00834 353 KRRYPHYLSDFTDALNPQ 370 (900)
T ss_pred HhhcccchHHHhhhhcch
Confidence 999999999999999975
No 6
>KOG1172|consensus
Probab=97.56 E-value=1.9e-05 Score=86.90 Aligned_cols=83 Identities=29% Similarity=0.337 Sum_probs=57.5
Q ss_pred CCCCCCCCCcccCCCCccchhhhhhhCC--CCCccccc---ccccchhhhhhhhHHhhhhcccccccccccccccccccC
Q psy17800 68 KKPPGDDPLRRTRKPFGGLINDIKRRFP--FYASDITD---GINCQCIAASIFMYFAALSGAITFGGLMGRDLDQHDRRF 142 (389)
Q Consensus 68 ~~~~~~dpl~r~~~p~~Gi~~DikrR~P--~Y~sD~~d---g~~~~~~~~~~~~~f~~l~pai~Fggl~~~~~~d~~rr~ 142 (389)
=||++|||.+|+++|. -++++-|||-+ -.+....+ ....+...+..-....++++ +.|||+. +|+|||.
T Consensus 274 Lppg~~d~~iri~~p~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~tg-rlFgGl~----~DikrR~ 347 (876)
T KOG1172|consen 274 LPPGEWDPRIRIEPPK-KLPSQKKRKEITRTFATGFMNTAGELGEEENGAAMEEEELQRTG-RLFGGLV----LDIKRRL 347 (876)
T ss_pred cCCcccCCceeccCcc-cccchHhhhhhcccccccccccccccccccccccccCccccccc-ccchhHH----HHHHhhc
Confidence 3799999999999999 88899888776 33333222 11111111112223333433 6689887 9999999
Q ss_pred Cccccccccccccc
Q psy17800 143 PFYASDITDGINCQ 156 (389)
Q Consensus 143 p~Y~SD~~dg~~~~ 156 (389)
|+|+|||.||++.+
T Consensus 348 p~Y~SD~~Da~~~~ 361 (876)
T KOG1172|consen 348 PHYKSDFRDAFNIQ 361 (876)
T ss_pred CCChHHHHHHhccc
Confidence 99999999999998
No 7
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.33 E-value=0.00094 Score=70.96 Aligned_cols=28 Identities=54% Similarity=0.960 Sum_probs=12.2
Q ss_pred cccccccccccccccccCCccccccccccccc
Q psy17800 125 ITFGGLMGRDLDQHDRRFPFYASDITDGINCQ 156 (389)
Q Consensus 125 i~Fggl~~~~~~d~~rr~p~Y~SD~~dg~~~~ 156 (389)
.-|||++ +|+|||.|+|||||+||++.|
T Consensus 7 ~~fgGl~----~Dikrr~p~Y~SD~~D~~~~~ 34 (510)
T PF00955_consen 7 RLFGGLI----NDIKRRLPWYWSDFTDGLNLQ 34 (510)
T ss_dssp ------------------STTCHHHCCSS-SH
T ss_pred ccccccc----ccccccccccccccccccccc
Confidence 5688888 999999999999999999865
No 8
>PRK11660 putative transporter; Provisional
Probab=96.08 E-value=0.083 Score=56.84 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=79.3
Q ss_pred HHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhhcceeeeccccc
Q psy17800 192 TLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNIEYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRF 271 (389)
Q Consensus 192 ~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~~~~~~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRF 271 (389)
-|.++.+.+++|++|++-|..+.|+|+.+.+.. ....+++++. .-....+.+.++.+++..+....+++|+.+-
T Consensus 61 GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~---~~~~~~~~~~---~~~~~~~l~Gii~~l~gllrlG~l~~fip~p 134 (568)
T PRK11660 61 GLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIL---YPVSQQFGLA---GLLVATLMSGIILILMGLARLGRLIEYIPLS 134 (568)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccChhHHHHHHH---HHHHHHhhHH---HHHHHHHHHHHHHHHHHHHhhhHHHhcCcHH
Confidence 488999999999999999999999998876653 3344455533 3346688999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy17800 272 TEEIFSSLISLLYIFESVGKLFT 294 (389)
Q Consensus 272 TeEiF~~lIs~iFi~eai~~l~~ 294 (389)
.=..|..=++++.+..-++++..
T Consensus 135 Vi~Gf~~g~al~I~~~Ql~~~lG 157 (568)
T PRK11660 135 VTLGFTSGIGIVIATLQIKDFFG 157 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 98889888998887777776644
No 9
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=95.92 E-value=0.13 Score=55.26 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=99.9
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHH-HHHhhcC--C
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLY-NFCKTNN--I 236 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly-~~c~~~~--~ 236 (389)
+-+-.....+.-+++|+.+.+ +...--|.++.+.+++|++|++-|..+.|+|+.+.+...... ++..... .
T Consensus 20 aGltv~~~~iP~~~ayA~lag------lpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~~~~~~~ 93 (563)
T TIGR00815 20 AGLTVGILLIPQAMAYAILAG------LSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGLQYLFDC 93 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHcC------CCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcCCCCccc
Confidence 334444555666777776542 223334889999999999999999999999997766544332 2333322 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy17800 237 EYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTM 295 (389)
Q Consensus 237 ~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~ 295 (389)
++...-..+.+-+.++.+++..+....+++|+.+-.=..|..=++++.+..-++++...
T Consensus 94 ~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~ 152 (563)
T TIGR00815 94 DAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGI 152 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56777789999999999999999999999999999999999999999998888888664
No 10
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=92.02 E-value=6.1 Score=40.68 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=97.9
Q ss_pred hHHHHHHHhhHHHHHHhccc---ccccCCccchhHHHHhhhHHHHHHH----HhcCcceeEeecccchHhHHHHHHHHHh
Q psy17800 160 ASIFMYFAALSGAITFGGLM---ADKTNNLVGISETLLATCISGVLFA----LLAGQPLIIIGTTGPLMLFDESLYNFCK 232 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll---~~~T~g~~gv~E~l~s~ai~Giifs----lf~GQPL~Ilg~TGP~lvf~~~ly~~c~ 232 (389)
-++++|-+++++.+-.+.-+ .+.|. .-++-++++++++.++.+ .+++.--.++|++++.... ++..+.
T Consensus 4 h~l~~~~~~i~~p~i~~~a~gl~~~~~~--~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~---~~~~~~ 78 (406)
T TIGR03173 4 HVLAMYAGAVAVPLIVGGALGLSAEQTA--YLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGP---MIAIGA 78 (406)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCHHHHH--HHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHH---HHHHhh
Confidence 45678888888666665432 22222 224567889999999997 5677888888988865554 333444
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHhhcceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCC
Q psy17800 233 TNNIEYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKE 312 (389)
Q Consensus 233 ~~~~~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~ 312 (389)
++++ +.-.-..++++++.+++. .=...++|+++.-.--.+.++|++..+--+++... .++...+ .
T Consensus 79 ~~~~---~~~~ga~~v~Gii~illg-~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~----g~~~~~~-------~ 143 (406)
T TIGR03173 79 GGGL---GAIFGAVIVAGLFVILLA-PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAA----GGAGAPD-------F 143 (406)
T ss_pred hhhH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhc----cCCCccc-------c
Confidence 4333 333445566666666666 22233444444333223334555555555554331 1110000 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc
Q psy17800 313 NQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP 372 (389)
Q Consensus 313 ~~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~ 372 (389)
.++... ++.+.++.+...+++ +.|+++.-+++.+++++.+.+.+..+
T Consensus 144 ~~~~~~----~l~l~~l~~~il~~~---------~~~~~~~~~aiLi~ivvg~iva~~~g 190 (406)
T TIGR03173 144 GSPQNL----GLALLTLVIILLLNR---------FGKGFLRSIAVLLGLVVGTIVAAALG 190 (406)
T ss_pred cchHHH----HHHHHHHHHHHHHHH---------HhhhHHHHhHHHHHHHHHHHHHHHhc
Confidence 122222 333334444433333 22335566799999999998887765
No 11
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=92.00 E-value=7.7 Score=40.26 Aligned_cols=186 Identities=16% Similarity=0.103 Sum_probs=108.4
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcc---eeEeecccchHhHHHHHHHHHhhcCC
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQP---LIIIGTTGPLMLFDESLYNFCKTNNI 236 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQP---L~Ilg~TGP~lvf~~~ly~~c~~~~~ 236 (389)
=+++||-+++.|.+..|..+-+.-+-..=++-+++.++++-++.++.++.| ..++|++--. +-..+. .....++
T Consensus 14 h~l~~~~~~i~~p~iv~~~~l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~--i~~~~~-~~~~~~~ 90 (415)
T TIGR00801 14 HLLAMFGGTVLVPLLVGLAPLSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAF--VSPMIA-IGSGLGI 90 (415)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHH--HHHHHH-HHhccCH
Confidence 477888899998888887763333333345678889999999999999999 6667765222 111111 1122232
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh---hc-ceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCC
Q psy17800 237 EYLTMRVYIGIWILIIALLVALI---EG-SVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKE 312 (389)
Q Consensus 237 ~fl~~r~wvgiW~~~~~~~~~a~---~~-s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~ 312 (389)
+ .-.=..++++++.++++.+ .. -.+.|+++.-.--...++|.+..+.-+++.+..... +|-..++
T Consensus 91 ~---~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~-~~~~~~~------- 159 (415)
T TIGR00801 91 P---AIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEA-AMSSATY------- 159 (415)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCC-ccccccc-------
Confidence 2 1112233444444444443 11 233667777777777788888888888876533211 1100011
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc
Q psy17800 313 NQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP 372 (389)
Q Consensus 313 ~~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~ 372 (389)
.++. ++++.+.|+.+...++++ .|+++.-+++.+++++.+.+.+..+
T Consensus 160 ~~~~----~~~vg~~~l~~~vl~~~~---------~~g~~~~~aiLigiv~g~i~a~~lg 206 (415)
T TIGR00801 160 GSLE----NLGVAFVVLALIILLNRF---------GKGFLKSISILIGILVGYILALFMG 206 (415)
T ss_pred Cchh----hHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122 344555566555544433 2345667799999999998887765
No 12
>KOG0236|consensus
Probab=88.42 E-value=3.8 Score=45.35 Aligned_cols=105 Identities=12% Similarity=0.211 Sum_probs=81.4
Q ss_pred HHHhhhHHHHHHHHhcCcceeEeecccchHhHHHH-HHHHHhhcC-----CCchhHHHHHHHHHHHHHHHHHHhhcceee
Q psy17800 192 TLLATCISGVLFALLAGQPLIIIGTTGPLMLFDES-LYNFCKTNN-----IEYLTMRVYIGIWILIIALLVALIEGSVFV 265 (389)
Q Consensus 192 ~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~-ly~~c~~~~-----~~fl~~r~wvgiW~~~~~~~~~a~~~s~lv 265 (389)
-|-|+.++.++|++|+-.+=.-+|+++=+.+.... +-+.+.+.+ ..++...+-+.+-++++-+++..+..-+++
T Consensus 112 GLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~ 191 (665)
T KOG0236|consen 112 GLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLV 191 (665)
T ss_pred HHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 57789999999999999998887776655554432 224454433 577888899999999999999999999999
Q ss_pred eccccchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy17800 266 KIFTRFTEEIFSSLISLLYIFESVGKLFTMA 296 (389)
Q Consensus 266 ~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f 296 (389)
.|+++=.=-.|..=.|+.-+..-+|.+..+-
T Consensus 192 ~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~ 222 (665)
T KOG0236|consen 192 RFLSEPALSGFTTGAALHIVTSQLKVLLGIT 222 (665)
T ss_pred HHccHHHHhHhhhhhhhhhhHHhhHhhcccc
Confidence 9999876666666677777777777776654
No 13
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=87.91 E-value=6 Score=40.53 Aligned_cols=193 Identities=16% Similarity=0.114 Sum_probs=100.3
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHhhc----C
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTN----N 235 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~~~----~ 235 (389)
.++.|+-..+.+.+..+..++...+-..=++-+++.++++-+++++..|-|+.++=..+-..++ .+...... +
T Consensus 10 ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~---~~~~~~g~~~~~~ 86 (389)
T PF00860_consen 10 HFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF---AFMIVIGMAESGG 86 (389)
T ss_dssp HHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH---HHHGGG-----HH
T ss_pred HHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh---hhhcccccccchh
Confidence 4556666666666666655442122223456788899999999999888888876544433333 22222221 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcc-eeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCCCC
Q psy17800 236 IEYLTMRVYIGIWILIIALLVALIEGS-VFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKENQ 314 (389)
Q Consensus 236 ~~fl~~r~wvgiW~~~~~~~~~a~~~s-~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~~~ 314 (389)
..+ +.-.=..+...++.++++.++.- .+.|+++.-.--...++|.+-...-+++.+...-.. +. ......
T Consensus 87 ~~~-~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~-~~-------~~~~~~ 157 (389)
T PF00860_consen 87 YGL-QAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN-PD-------GLLVGD 157 (389)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS----BT-------T-B---
T ss_pred hch-hhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc-cc-------cccccc
Confidence 111 12223446677777788888874 777888877777888888888888887754332110 00 000111
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc-ccCcc
Q psy17800 315 PNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP-TYTEK 377 (389)
Q Consensus 315 p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~-~~~~k 377 (389)
+.... +.+.++.....+..+ .|....-+++.++|++.+.+.+..+ ++.+.
T Consensus 158 ~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~ailigi~~g~i~~~~~g~~~~~~ 208 (389)
T PF00860_consen 158 GKNLG----LAVLTLLFILLLSLF---------LKGFLRKGAILIGIIAGWIVAAILGVVDFSP 208 (389)
T ss_dssp HHHHH----HHHHHHHHHHHHHHS---------SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSH
T ss_pred ccccc----cccccchhhhhhhhh---------hhhhcccccchhhhhhhhhhhhcccccccCc
Confidence 22222 333344444434333 4555667899999999998877765 44433
No 14
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=86.96 E-value=22 Score=37.48 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=109.7
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCC-ccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHHHHHHHHh---hcC
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNN-LVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCK---TNN 235 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g-~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~~ly~~c~---~~~ 235 (389)
=+++||-.+++|.+..++.++-..+. ..=++-+++.++++-++.++++..=.++.|+|+. |-..+..+|. .+|
T Consensus 17 hvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~---~~~~~~~i~~~~~~~g 93 (433)
T PRK11412 17 WFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGL---WWGTILTITLGEASRG 93 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchH---HHHHHHHHHhcccccC
Confidence 47889988999988888776543332 2334567889999999999987777777788774 4444555563 234
Q ss_pred CCchh-HH--HHHHHHHHHHHHHHHHhh-cceeeeccccchhhHHHHHHHHHHHHHHHHHHHHh-hhhCCCcCCCCCCCC
Q psy17800 236 IEYLT-MR--VYIGIWILIIALLVALIE-GSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTM-ATISPILLETLPLPT 310 (389)
Q Consensus 236 ~~fl~-~r--~wvgiW~~~~~~~~~a~~-~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~-f~~~p~~~~y~~~~~ 310 (389)
.++-. +. .+--+=.+++.++++.++ ...+.|+++--.-=..=++|.+-.+--+++.+... .. ...++
T Consensus 94 ~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~---~~~~~----- 165 (433)
T PRK11412 94 TPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFG---IADPN----- 165 (433)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCcc---Ccccc-----
Confidence 33311 11 233344455555555555 34555666555555666677777777777665432 10 00111
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhc
Q psy17800 311 KENQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLD 368 (389)
Q Consensus 311 ~~~~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~ 368 (389)
.. ..+..+.+++.|+.+...+.. +-|.+++-|++.+++++-..+.
T Consensus 166 --~~--~~~~~~~~a~~~l~~il~~~~---------~~~g~~~~~svLiGiv~G~v~a 210 (433)
T PRK11412 166 --GK--IQLPPFGLSVAVMCLVLAMII---------FLPQRIARYSLLVGTIVGWILW 210 (433)
T ss_pred --cc--cchHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHH
Confidence 01 012223344555554444433 3366788899999998888763
No 15
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=69.52 E-value=1.5e+02 Score=31.05 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=65.8
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHh--cCcceeEeecccchHhHHHHHHHHHhh--cC
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALL--AGQPLIIIGTTGPLMLFDESLYNFCKT--NN 235 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf--~GQPL~Ilg~TGP~lvf~~~ly~~c~~--~~ 235 (389)
-++.||-..+++.+-.| ++..++++.++++-+++++. ++-|+.. |+++ .|-..+-..+.. .+
T Consensus 39 h~lam~~~~v~~Plilg----------l~~~~tl~~sGi~TllQ~~~~G~rlP~v~-G~sf---~f~~~~~~~~~~~~~~ 104 (429)
T TIGR03616 39 HAVAMFGATVLMPLLMG----------FDPNLTILMSGIGTLLFFLITGGRVPSYL-GSSA---AFVGAVIAATGYNGQG 104 (429)
T ss_pred HHHHHHHHHHHHHHHhC----------CCHhHHHHHHHHHHHHHHHHhCCCceeEE-cCcH---HHHHHHHHHHhhcccC
Confidence 57778777777666654 22336899999999999864 6666644 5554 444444333211 11
Q ss_pred C-CchhHHHHHHHHHHHHHHHHHHhhcceeeecccc-chhhH---HHHHHHHHHHHHHHH
Q psy17800 236 I-EYLTMRVYIGIWILIIALLVALIEGSVFVKIFTR-FTEEI---FSSLISLLYIFESVG 290 (389)
Q Consensus 236 ~-~fl~~r~wvgiW~~~~~~~~~a~~~s~lv~y~TR-FTeEi---F~~lIs~iFi~eai~ 290 (389)
. ++++.-.-..+-+.++.++++.+-....++++.| |+..+ ..++|.+--+.-+++
T Consensus 105 ~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~ 164 (429)
T TIGR03616 105 TNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVK 164 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 2455555566666677777766644333444444 33333 344555444444444
No 16
>PRK10720 uracil transporter; Provisional
Probab=64.59 E-value=1.9e+02 Score=30.32 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=88.7
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcC-cceeEeecccchHhHHHHHHHHHhhcCCCc
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAG-QPLIIIGTTGPLMLFDESLYNFCKTNNIEY 238 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~G-QPL~Ilg~TGP~lvf~~~ly~~c~~~~~~f 238 (389)
=++.||-++++|.+-+| ++..+.++.++++-+++++..| .=-.+.|++ -.|...+-.... .+++.
T Consensus 23 hvl~m~~~~i~~Pli~g----------l~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~s---fa~i~~~~~~~~-~~~~~ 88 (428)
T PRK10720 23 HLFAMFGATVLVPILFH----------INPATVLLFNGIGTLLYLFICKGKIPAYLGSS---FAFISPVLLLLP-LGYEV 88 (428)
T ss_pred HHHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHhccCccceEEeCc---HHHHHHHHHHHH-ccHHH
Confidence 47789999999888773 3345689999999999998775 323344543 344333333332 23222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----cceeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCCCC
Q psy17800 239 LTMRVYIGIWILIIALLVALIE----GSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKENQ 314 (389)
Q Consensus 239 l~~r~wvgiW~~~~~~~~~a~~----~s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~~~ 314 (389)
. .=.-++++++.++++.+- -..+.|+++.-.--.|-++|.+--+--+++ +. ..+.......+
T Consensus 89 ~---lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~--------~~---g~~~~~~~~~~ 154 (428)
T PRK10720 89 A---LGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAG--------MA---GLLPAEGQTPD 154 (428)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHh--------hc---cccCCCCcccc
Confidence 2 223455555556666542 223455555544444444444433222221 11 00000000112
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc
Q psy17800 315 PNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP 372 (389)
Q Consensus 315 p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~ 372 (389)
+.+ +++++.++.+...+.++ .|++..-+++.+++++.+.+.++.+
T Consensus 155 ~~~----~~lalv~l~iil~~~~~---------~kg~~~~~~iLigIvvG~ila~~lG 199 (428)
T PRK10720 155 SKT----IIISMVTLAVTVLGSVL---------FRGFLAIIPILIGVLVGYALSFAMG 199 (428)
T ss_pred hHH----HHHHHHHHHHHHHHHHH---------hccHHHHhHHHHHHHHHHHHHHHhc
Confidence 222 33444555554443222 2334455568999999998887765
No 17
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=55.67 E-value=8.5 Score=31.46 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=38.3
Q ss_pred hhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHH
Q psy17800 168 ALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFD 224 (389)
Q Consensus 168 ~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~ 224 (389)
.+.=+++|+.+.+ +...--|.++.+.+++|++|++-|..++|+|+-+.+..
T Consensus 30 ~iPq~~a~A~lAg------~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 30 AIPQGMAYALLAG------VPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred HHHHHHHHHHHcC------CCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 3555677775544 22334578899999999999999999999998776643
No 18
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=55.36 E-value=1.6e+02 Score=31.42 Aligned_cols=201 Identities=16% Similarity=0.081 Sum_probs=116.1
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCC-ccchhHHHHhhhHHHHHHHHhcC----cceeEeecccchHhHHHHHHHHHhhc
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNN-LVGISETLLATCISGVLFALLAG----QPLIIIGTTGPLMLFDESLYNFCKTN 234 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g-~~gv~E~l~s~ai~Giifslf~G----QPL~Ilg~TGP~lvf~~~ly~~c~~~ 234 (389)
=++.||-+.+++.+.-|.-++-..+. .+=++-.++.++++-+++++--+ |=..++|++- .|...+-...+.+
T Consensus 25 H~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sF---afi~p~i~~~~~~ 101 (451)
T COG2233 25 HLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSF---AFVAPMIAIGGTT 101 (451)
T ss_pred HHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechH---HHHHHHHHHHhcc
Confidence 58899999999999888776544332 23355678899999999998444 6667788764 4444555555555
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcc-eeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCCC
Q psy17800 235 NIEYLTMRVYIGIWILIIALLVALIEGS-VFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKEN 313 (389)
Q Consensus 235 ~~~fl~~r~wvgiW~~~~~~~~~a~~~s-~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~~ 313 (389)
+ --.--..-|+-.+.++.++.+.=.+ .+.|+++--.-=..-++|.+-.+.-|++.+.......+ ..+ ..
T Consensus 102 g--~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~-~~~-------~~ 171 (451)
T COG2233 102 G--DGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAG-NPD-------FG 171 (451)
T ss_pred C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCC-Ccc-------cC
Confidence 5 1112234445555444444444444 66666666555556666776666666665543321100 001 12
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchhhHHHHHHHhhhccccc-cc------CcccccCCCCCC
Q psy17800 314 QPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP-TY------TEKLKVPEGLSP 386 (389)
Q Consensus 314 ~p~~alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfgv~iaI~~~~~i~~~~~-~~------~~kL~vp~~f~p 386 (389)
+++.. .|++.|+.+...+..| + |.+++-.++.+++++-..+.++.+ ++ .+=+.+|+.+.+
T Consensus 172 ~~~~l----~la~~tl~~il~~~~f-----~----~g~~~~i~ILiGlv~G~~la~~~G~vdf~~v~~a~w~~~P~~~~f 238 (451)
T COG2233 172 SLENL----GLALVTLLIILLINRF-----G----KGFLRRIPILIGLVVGYLLALFMGMVDFSGVAEAPWFALPTPFYF 238 (451)
T ss_pred chhHH----HHHHHHHHHHHHHHHH-----h----hhHHHHHHHHHHHHHHHHHHHHhCCcCccccccCceeeCCcccCC
Confidence 23333 4455555555444433 2 234445688888888888877765 33 344567776654
No 19
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=43.83 E-value=3.4e+02 Score=30.09 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhhc-chhhHHHHHHHhhhcccc
Q psy17800 318 ALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALG-DFGVPIAIIVMVSLDYVV 371 (389)
Q Consensus 318 alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~is-Dfgv~iaI~~~~~i~~~~ 371 (389)
+++++.+.++..=+-++++.++.---+...+++++. |..-.+.|.+.+++++..
T Consensus 470 ~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~ 524 (743)
T TIGR00870 470 ALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFAC 524 (743)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777777665556678888888 987777776666665554
No 20
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.97 E-value=3.3e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=18.9
Q ss_pred ccccccCCccchhHHHHhhhHHHHHHH
Q psy17800 178 LMADKTNNLVGISETLLATCISGVLFA 204 (389)
Q Consensus 178 ll~~~T~g~~gv~E~l~s~ai~Giifs 204 (389)
+.+.++...+|..-.++.+.++|+++.
T Consensus 102 ~f~~~~~~~~gi~tli~~~i~~G~~~~ 128 (206)
T PF06570_consen 102 FFSPKNSNQYGIITLILVSIVGGLVFY 128 (206)
T ss_pred HHhhcccccccHHHHHHHHHHHHHHHH
Confidence 345555666688877778888888765
No 21
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.16 E-value=54 Score=31.62 Aligned_cols=39 Identities=36% Similarity=0.554 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcchh
Q psy17800 318 ALFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFG 356 (389)
Q Consensus 318 alls~iL~~gTf~la~~L~~fk~s~ff~~~vR~~isDfg 356 (389)
+|+|.+|++.|..+|-.+...|+|.=-.++-=|-=+||-
T Consensus 141 fLICT~LfLSTVVLANKVS~LKrskQ~gKRqpRSNGDFL 179 (227)
T PF05399_consen 141 FLICTLLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDFL 179 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccee
Confidence 488999999999999998888888764444444567874
No 22
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=33.91 E-value=54 Score=33.39 Aligned_cols=46 Identities=28% Similarity=0.249 Sum_probs=33.7
Q ss_pred hHHHHHHHhhHHHHHHhcccccccCC-------ccchhHHHHhhhHHHHHHHH
Q psy17800 160 ASIFMYFAALSGAITFGGLMADKTNN-------LVGISETLLATCISGVLFAL 205 (389)
Q Consensus 160 a~~flyfa~l~PaItFG~ll~~~T~g-------~~gv~E~l~s~ai~Giifsl 205 (389)
=++=++.+++..|+|+|..-++.+++ .+.=..+++..-.+|++|++
T Consensus 32 Ysig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvvfnl 84 (336)
T PF07168_consen 32 YSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVVFNL 84 (336)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHhhhh
Confidence 56778889999999999876543333 23345678888888998875
No 23
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=31.76 E-value=1.1e+02 Score=26.56 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcc----ccccccchhhhhcchhhHHHHHHHhhhcc
Q psy17800 316 NTALFCTVLALGTFLIALYLRHFRN----SKFLGRSARRALGDFGVPIAIIVMVSLDY 369 (389)
Q Consensus 316 ~~alls~iL~~gTf~la~~L~~fk~----s~ff~~~vR~~isDfgv~iaI~~~~~i~~ 369 (389)
|.+|-+.+.++|+|.++.-||-=-+ +.|-.-+--|..+||-+.--|+-++.+.+
T Consensus 53 NaFLsGf~s~VG~fVL~vsLR~Q~~p~n~~~f~~is~eRafaDfv~~slvLh~~v~nF 110 (112)
T PF02109_consen 53 NAFLSGFISCVGQFVLTVSLRIQLNPENKSEFPGISPERAFADFVFCSLVLHFVVFNF 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCChhhhhHHHHHHHHHHHHheeec
Confidence 4455677889999999999995433 45555677899999976655555554444
No 24
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=31.61 E-value=50 Score=22.11 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy17800 241 MRVYIGIWILIIALLVALIEGS 262 (389)
Q Consensus 241 ~r~wvgiW~~~~~~~~~a~~~s 262 (389)
+-.|+|+++++++++++++++-
T Consensus 8 ~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 8 IHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999998853
No 25
>KOG3312|consensus
Probab=29.38 E-value=30 Score=31.71 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=14.5
Q ss_pred hhhCCCCCcccccccccchhh
Q psy17800 91 KRRFPFYASDITDGINCQCIA 111 (389)
Q Consensus 91 krR~P~Y~sD~~dg~~~~~~~ 111 (389)
-.++|+||-.|+.|+.-+.+.
T Consensus 114 VAkLPF~Pis~iqglSHRnL~ 134 (186)
T KOG3312|consen 114 VAKLPFTPISIIQGLSHRNLK 134 (186)
T ss_pred EEecCCcchHHHhcccccCCC
Confidence 457788888888777655444
No 26
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=23.59 E-value=2.6e+02 Score=31.74 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=46.9
Q ss_pred eeccccchhhHHHHHHHHHHHHHHHHHHHHhhhhCCCcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy17800 265 VKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLRHFRNSKFL 344 (389)
Q Consensus 265 v~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~p~~~~y~~~~~~~~~p~~alls~iL~~gTf~la~~L~~fk~s~ff 344 (389)
..++.-..|=++++.++.||.|- +..+...-.+|.+. +--+.|+++.++.. +-...++.++
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~-~~~~~~~~~~~~~~-------------~eei~s~~il~~~~-----l~G~~~~~i~ 173 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYS-IPCLKNGRTKHLLT-------------NEEIVSLIILIASV-----LTGLRGLSIW 173 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccCCCc-------------HhHHHHHHHHHHHH-----HHccCCCEEE
Confidence 35666666777777777777654 32222111122221 12366766644444 5556788899
Q ss_pred ccchhhhhcchhhHHHH
Q psy17800 345 GRSARRALGDFGVPIAI 361 (389)
Q Consensus 345 ~~~vR~~isDfgv~iaI 361 (389)
+=++|++++-+.+.++-
T Consensus 174 ~~sl~~il~~~~vl~~a 190 (764)
T TIGR02865 174 GLSLENIIARLAVLLIS 190 (764)
T ss_pred eeEHHHHHHHHHHHHHH
Confidence 99999999998776543
Done!