Query psy17800
Match_columns 389
No_of_seqs 212 out of 496
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 23:26:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 30.6 21 0.0015 23.2 3.2 24 238-261 20-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 27.6 27 0.002 22.6 3.2 24 238-261 19-42 (42)
3 d3b45a1 f.51.1.1 (A:91-270) Gl 26.7 71 0.0052 25.2 6.9 58 166-225 62-119 (180)
4 d2ffea1 c.143.1.1 (A:1-309) LP 12.3 33 0.0024 30.6 1.3 40 4-46 175-214 (309)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 10.5 69 0.005 18.6 1.9 11 275-285 9-19 (30)
6 d1h2sb_ f.17.4.1 (B:) Sensory 9.9 1.3E+02 0.0092 19.8 3.3 40 162-201 3-46 (60)
7 d2nr9a1 f.51.1.1 (A:4-192) Glp 8.7 81 0.0059 25.2 2.4 57 165-223 63-119 (189)
8 d1vkua_ a.28.1.1 (A:) Acyl car 7.9 83 0.0061 21.6 1.9 31 1-31 4-34 (85)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 1.5E+02 0.011 17.2 2.4 20 158-177 3-22 (32)
10 d2hg6a1 d.364.1.1 (A:1-106) Hy 6.5 29 0.0021 26.1 -1.4 14 266-279 27-40 (106)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=30.60 E-value=21 Score=23.19 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q psy17800 238 YLTMRVYIGIWILIIALLVALIEG 261 (389)
Q Consensus 238 fl~~r~wvgiW~~~~~~~~~a~~~ 261 (389)
|+.|-.|+++-+.++++.+|++|+
T Consensus 20 Fi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 20 FIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 577888999999999999999884
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.59 E-value=27 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q psy17800 238 YLTMRVYIGIWILIIALLVALIEG 261 (389)
Q Consensus 238 fl~~r~wvgiW~~~~~~~~~a~~~ 261 (389)
|+.|-.|.++=+.++++.+|++|+
T Consensus 19 Fik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 577888999999999999999884
No 3
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=26.67 E-value=71 Score=25.17 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhHHH
Q psy17800 166 FAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDE 225 (389)
Q Consensus 166 fa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf~~ 225 (389)
+.|+..-..||..+++.-+..-=..=.++++.++|++..++... ...|.+|-+...-.
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~ 119 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMG 119 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHH
Confidence 33444555678777766543222223345667777777887665 46788886554433
No 4
>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]}
Probab=12.31 E-value=33 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhccceeeCCCCCCCcCCCCcchhhhhHHHHHHh
Q psy17800 4 RDLLSAINEFLDCSIVLPPGDWERKALLPFRELKAKNEAIRRR 46 (389)
Q Consensus 4 ~dll~~ideFld~~~vlpPg~w~~~~~~~~~~~~~~~~~~~~r 46 (389)
.+.+++|++ .|.||++||.|--++ +|.-.++-..+.++++
T Consensus 175 ~~~~~aI~~--AD~Iv~gPGs~ytSI-~P~Llv~gi~~ai~~~ 214 (309)
T d2ffea1 175 PKVLEAFEK--EENILIGPSNPITSI-GPIISLPGMRELLKKK 214 (309)
T ss_dssp HHHHHHHHH--CCEEEECSSCTTTTH-HHHHHSTTHHHHHTTS
T ss_pred HHHHHHHHh--CCcEEEcCCcchhhh-cccccchHHHHHHhcC
Confidence 467888988 789999999999886 2212233334555443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.52 E-value=69 Score=18.63 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy17800 275 IFSSLISLLYI 285 (389)
Q Consensus 275 iF~~lIs~iFi 285 (389)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888887653
No 6
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=9.86 E-value=1.3e+02 Score=19.83 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=27.2
Q ss_pred HHHHHHhh---HHHHHHhcccc-cccCCccchhHHHHhhhHHHH
Q psy17800 162 IFMYFAAL---SGAITFGGLMA-DKTNNLVGISETLLATCISGV 201 (389)
Q Consensus 162 ~flyfa~l---~PaItFG~ll~-~~T~g~~gv~E~l~s~ai~Gi 201 (389)
+|+|...+ .-+|++|.... .+|+..-.|+|.-+|..++=|
T Consensus 3 vfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsailgli 46 (60)
T d1h2sb_ 3 VFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLI 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHHHHHHH
Confidence 56666554 47899998854 556667778888777655433
No 7
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=8.66 E-value=81 Score=25.17 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=36.9
Q ss_pred HHHhhHHHHHHhcccccccCCccchhHHHHhhhHHHHHHHHhcCcceeEeecccchHhH
Q psy17800 165 YFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLF 223 (389)
Q Consensus 165 yfa~l~PaItFG~ll~~~T~g~~gv~E~l~s~ai~Giifslf~GQPL~Ilg~TGP~lvf 223 (389)
.+.|+..-..||..+++..+..-=..=.+++..+++++++++.++| ++|.+|-+--.
T Consensus 63 l~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~gl 119 (189)
T d2nr9a1 63 ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAV 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHHH
Confidence 3445556666777766654433323334568888888888888776 58999976543
No 8
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=7.93 E-value=83 Score=21.60 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=27.4
Q ss_pred CChhhHHHHHhhhhccceeeCCCCCCCcCCC
Q psy17800 1 MERRDLLSAINEFLDCSIVLPPGDWERKALL 31 (389)
Q Consensus 1 ~~r~dll~~ideFld~~~vlpPg~w~~~~~~ 31 (389)
|+|+++.+.+-+.+.+..=+||.+.++...+
T Consensus 4 m~~~~i~~~l~~iv~~~l~~~~~~i~~~~~~ 34 (85)
T d1vkua_ 4 MERKKLIAKFVEIASEKMGKDLETVDEENTF 34 (85)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCSCCTTSBT
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCCCCH
Confidence 5799999999999999999999999988644
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.04 E-value=1.5e+02 Score=17.21 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=13.8
Q ss_pred hhhHHHHHHHhhHHHHHHhc
Q psy17800 158 IAASIFMYFAALSGAITFGG 177 (389)
Q Consensus 158 l~a~~flyfa~l~PaItFG~ 177 (389)
+++++|+-|..+.-.|+-|-
T Consensus 3 lgavfyivfialffgiavgi 22 (32)
T d2e74e1 3 LGAVFYIVFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHhhh
Confidence 56888888877766655543
No 10
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.48 E-value=29 Score=26.13 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=11.5
Q ss_pred eccccchhhHHHHH
Q psy17800 266 KIFTRFTEEIFSSL 279 (389)
Q Consensus 266 ~y~TRFTeEiF~~l 279 (389)
.|+-||+|+.|++=
T Consensus 27 ~~ivRFSEDsFGmD 40 (106)
T d2hg6a1 27 RYIVRFSEDSFGMD 40 (106)
T ss_dssp EEEEESCGGGCSSS
T ss_pred eEEEEecccccCCc
Confidence 58899999998753
Done!