RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17800
(389 letters)
>gnl|CDD|233143 TIGR00834, ae, anion exchange protein. The Anion Exchanger (AE)
Family (TC 2.A.31)Characterized protein members of the
AE family are found only in animals.They preferentially
catalyze anion exchange (antiport) reactions, typically
acting as HCO3-:Cl- antiporters, but also transporting a
range of other inorganic and organic anions.
Additionally, renal Na+:HCO3- cotransporters have been
found to be members of the AE family. They catalyze the
reabsorption of HCO3- in the renal proximal tubule
[Transport and binding proteins, Anions].
Length = 900
Score = 372 bits (958), Expect = e-121
Identities = 173/422 (40%), Positives = 243/422 (57%), Gaps = 83/422 (19%)
Query: 2 ERRDLLSAINEFLDCSIVLPPGDWE-RKALLPFRELKAKNEAIRRRQSRT--QDAAEAQK 58
+R DLL+ I+EFLDCSIVLPPG+W+ L P L+ + +R + T +
Sbjct: 261 DRDDLLAGIDEFLDCSIVLPPGEWDPEIRLEPPAPLQ-RELLRKRYEPSTVRPENPTMGG 319
Query: 59 LLLLGEDGDKKPPGDD-PLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMY 117
+ G + P GDD PL+RT +PFGGLI DIKRR+P Y SD TD +N QC+AA IF+Y
Sbjct: 320 DTEPEDGGSEGPHGDDDPLQRTGRPFGGLIRDIKRRYPHYLSDFTDALNPQCLAAVIFIY 379
Query: 118 FAALSGAITFGGLMGRDLDQHDRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGG 177
FAALS AITFGGL+G
Sbjct: 380 FAALSPAITFGGLLG--------------------------------------------- 394
Query: 178 LMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNIE 237
+KT N++G+SE L++T + GVLFALLA QPL+++G +GPL++F+E+ ++FC++N +E
Sbjct: 395 ---EKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLE 451
Query: 238 YLTMRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMAT 297
YL RV+IG+W++++ LL+ EGS V+ +RFT+EIFS LISL++I+E+ KL +
Sbjct: 452 YLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQ 511
Query: 298 ISPILL-----------------------------ETLPLPTKENQPNTALFCTVLALGT 328
P+ + TL QPNTAL VL LGT
Sbjct: 512 EHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGT 571
Query: 329 FLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVV-PTYTEKLKVPEGLSPS 387
F +A++LR F+NS++ ARR +GDFGVPI+I++MV +D + TYT+KL VP GL +
Sbjct: 572 FFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLKVT 631
Query: 388 NP 389
NP
Sbjct: 632 NP 633
>gnl|CDD|216212 pfam00955, HCO3_cotransp, HCO3- transporter family. This family
contains Band 3 anion exchange proteins that exchange
CL-/HCO3-. This family also includes cotransporters of
Na+/HCO3-.
Length = 501
Score = 355 bits (913), Expect = e-119
Identities = 148/356 (41%), Positives = 201/356 (56%), Gaps = 89/356 (25%)
Query: 75 PLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMGRD 134
PL RT + FGGLI DIKRR+P+Y SD D +N QC+AA IF+YFAALS AITFGGL+G
Sbjct: 1 PLERTGRLFGGLIRDIKRRYPWYLSDFRDALNPQCLAAIIFIYFAALSPAITFGGLLG-- 58
Query: 135 LDQHDRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADKTNNLVGISETLL 194
+KT L+G+SE+LL
Sbjct: 59 ----------------------------------------------EKTEGLMGVSESLL 72
Query: 195 ATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNIEYLTMRVYIGIWILIIAL 254
+T + G++F+LLAGQPL+I+G+TGPL++F+E+L+NFCK N ++YLT RV+IG+W+ +I L
Sbjct: 73 STAVQGIVFSLLAGQPLLILGSTGPLLVFEEALFNFCKDNGLDYLTGRVWIGLWLAVIVL 132
Query: 255 LVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLE---------- 304
L+ EGS V+ TRFT+EIF++LISL++I+E+ KL + P+L
Sbjct: 133 LLVATEGSFLVRYITRFTQEIFAALISLIFIYETFKKLIKIFKAHPLLSHYITNYSCVCV 192
Query: 305 -------------TLPLPTKE------------------NQPNTALFCTVLALGTFLIAL 333
L E QPNTAL +L GTF IA
Sbjct: 193 PPITPNNHSTEIDWTNLTKSECENYGGLLIGTSCGPHPPPQPNTALLSLILMFGTFFIAY 252
Query: 334 YLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVPTYTEKLKVPEGLSPSNP 389
+L+ F+NS+F RR +GDFGVPIAI++MV +DY++ YT KL VP G P+NP
Sbjct: 253 FLKKFKNSRFFPGKVRRVIGDFGVPIAILIMVLVDYLIGVYTPKLSVPSGFKPTNP 308
>gnl|CDD|219468 pfam07565, Band_3_cyto, Band 3 cytoplasmic domain. This family
contains the cytoplasmic domain of the Band 3 anion
exchange proteins that exchange Cl-/HCO3-. Band 3
constitutes the most abundant polypeptide in the red
blood cell membrane, comprising 25% of the total
membrane protein. The cytoplasmic domain of band 3
functions primarily as an anchoring site for other
membrane-associated proteins. Included among the protein
ligands of cdb3 are ankyrin, protein 4.2, protein 4.1,
glyceraldehyde-3-phosphate dehydrogenase (GAPDH),
phosphofructokinase, aldolase, hemoglobin, hemichromes,
and the protein tyrosine kinase (p72syk).
Length = 250
Score = 56.9 bits (138), Expect = 3e-09
Identities = 18/26 (69%), Positives = 24/26 (92%)
Query: 3 RRDLLSAINEFLDCSIVLPPGDWERK 28
R+DLL+ I+EFLDCSIVLPPG+W+ +
Sbjct: 225 RKDLLAGIDEFLDCSIVLPPGEWDPE 250
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 33.7 bits (77), Expect = 0.16
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 26 ERKALLPFRELKAKNEAIRRRQ-------SRTQDAAEAQ 57
+R L RE KAK EA ++R+ SR DA EAQ
Sbjct: 21 QRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQ 59
>gnl|CDD|212109 cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of
mainly uncharacterized prokaryotic proteins similar to
archaeal thermoactive amylopullulanases; glycoside
hydrolase family 57 (GH57). This subfamily of mainly
uncharacterized bacterial proteins, shows high sequence
homology to GH57 archaeal thermoactive amylopullulanases
(APU, E.C 3.2.1.1/41). Thermoactive APUs are type II
pullulanases with both pullulanolytic and amylolytic
activities. They have an acid pH optimum and the
presence of Ca2+ might increase their activity,
thermostability, and substrate affinity.
Length = 327
Score = 31.5 bits (72), Expect = 0.70
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 161 SIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLAGQPLIIIGTTG 218
++F Y LS A+ FGGL++ E A + G L+ I T G
Sbjct: 211 TVFFYDGPLSRAVAFGGLLSS--------GER-FAGRLLSAFDDRRGGPQLVHIATDG 259
>gnl|CDD|236663 PRK10215, PRK10215, hypothetical protein; Provisional.
Length = 218
Score = 30.9 bits (70), Expect = 0.79
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 107 CQCIAASIFMYFAALSGAITFGGLMGRDLDQHDRRFPFYASDITDGI 153
AA + LSG I++ GL+ + + + SD G+
Sbjct: 6 GFFKAAGLLPLAFMLSGCISY-GLV-SHTAKGESGKYQWQSDTITGL 50
Score = 28.6 bits (64), Expect = 4.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 155 CQCIAASIFMYFAALSGAITFGGLMADKTNN 185
AA + LSG I++ GL++
Sbjct: 6 GFFKAAGLLPLAFMLSGCISY-GLVSHTAKG 35
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 31.8 bits (73), Expect = 0.80
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 54 AEAQKLLLLGEDGDKKPPGDDPLRRTR----KPFGGLINDIKRRF 94
E Q ++L G + P + T+ KPF G+I +++RR+
Sbjct: 336 EEQQDIILYGSGDEVIPFYFNDRGGTKKRTHKPFEGVIPNLERRY 380
>gnl|CDD|114140 pfam05399, EVI2A, Ectropic viral integration site 2A protein
(EVI2A). This family contains several mammalian
ectropic viral integration site 2A (EVI2A) proteins. The
function of this protein is unknown although it is
thought to be a membrane protein and may function as an
oncogene in retrovirus induced myeloid tumours.
Length = 227
Score = 30.4 bits (68), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 319 LFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDF 355
L CT L L T ++A + + SK +G+ R+ GDF
Sbjct: 142 LICTFLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDF 178
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 30.4 bits (69), Expect = 2.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 54 AEAQKLLLLGEDGDKKP----PGDDPLRRTRKPFGGLINDIKRRFPFYASD 100
EAQK +L G + G R KPF G+I +++RR+ S+
Sbjct: 343 EEAQKAILYGSGEEVIVVKYRNGGGETFRYHKPFEGVIPELERRYLETESE 393
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 30.3 bits (69), Expect = 2.2
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 15/75 (20%)
Query: 148 DITDGINCQCIAASIFMYFAALSGAITFGGLMADKTNNLVGISETLLATCISGVLFALLA 207
D+ G+ +A + M FA +G L A+ ++G+++AL
Sbjct: 24 DLLAGLTVAAVALPLAMAFAIAAGV---PPEAG------------LYASIVAGIIYALFG 68
Query: 208 GQPLIIIGTTGPLML 222
G +I G TG +
Sbjct: 69 GSRGLISGPTGAFAV 83
>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of
Site-2 protease (S2P), zinc metalloproteases (MEROPS
family M50) which cleave transmembrane domains of
substrate proteins, regulating intramembrane proteolysis
(RIP) of diverse signal transduction mechanisms. Members
of the S2P/M50 family of RIP proteases use proteolytic
activity within the membrane to transfer information
across membranes to integrate gene expression with
physiologic stresses occurring in another cellular
compartment. In eukaryotic cells they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum stress responses. In prokaryotes
they regulate such processes as sporulation, cell
division, stress response, and cell differentiation.
This group appears to be limited to Archaeal S2P/M50s
homologs with additional putative N-terminal
transmembrane spanning regions, relative to the core
protein, and either one or two PDZ domains present.
Length = 263
Score = 29.6 bits (67), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 328 TFLIALYLRHFRNSKFLGRSAR-----RALGDFGVPIAIIVMVSLDYVV 371
T+ L LR + F+ + AR RA G+ G+PIA + M+ + ++
Sbjct: 29 TYGPFLMLRTKKGRGFIDKLARPKRFWRAFGNIGIPIAFVGMIFMLLLI 77
>gnl|CDD|214407 MTH00032, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 669
Score = 29.9 bits (67), Expect = 2.6
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 250 LIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLPLP 309
L +A V + + V ++++ EIF + I LLY SV L +++IS L+
Sbjct: 44 LFLAYEVLINDAVVHIELYKWIESEIFITHIGLLYDTLSVTMLLVISSIS-TLVHIYSTS 102
Query: 310 TKENQPNTALFCTVLALGTFLI 331
+ P+ F L+L TFL+
Sbjct: 103 YMSDDPHVPRFLCYLSLFTFLM 124
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 29.5 bits (67), Expect = 3.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 27 RKALLPFRELKAKNEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPPGDDPL 76
RKA E KA+ E + + + AEA G DG+ K DPL
Sbjct: 419 RKA-----EKKAEKEEAEKAAA--KKKAEAAAKKAKGPDGETKKVDPDPL 461
>gnl|CDD|221995 pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein
mannosyltransferase. This family contains members that
are not captured by pfam02366.
Length = 158
Score = 28.3 bits (64), Expect = 4.7
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 251 IIALLVALIEGSVF-VKIFTRFTEEIFSSLISLLYIFESVGKLF--TMATISPILLETLP 307
+IAL L S F V++ + + L+S+L ++ +LF A ++ +LL P
Sbjct: 9 LIALFTKLFGDSEFAVRLPS-----ALAGLLSILLLYLLARRLFGRRAALLAVLLLAVTP 63
Query: 308 L---PTKENQPNTAL-FCTVLALGTFLIAL 333
L + P+ L LAL AL
Sbjct: 64 LFVLGSVLFTPDAPLLLFWALALYFLYRAL 93
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 28.9 bits (65), Expect = 4.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 61 LLGEDGDKKPPGDDPLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAAS 113
LLG GDKKP + L R K I+ RF Y ++ + NCQ I
Sbjct: 7 LLGCFGDKKPWAGNTLARPAKSLPWQPKFIEVRFLLYTNENPN--NCQLITTG 57
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 29.0 bits (65), Expect = 5.4
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 292 LFTMATISPILLETLPLPTKENQPNTALFCTV----LALGTFLIALYLRHFRNSKFLGRS 347
L A + I+L L T P + LAL L A+ R K +
Sbjct: 11 LAVAAIVLAIVLCGLLAGTTPISPAFDYILALVAVNLALLLILSAVIGR-----KVIRLL 65
Query: 348 ARRALGDFGVPIA--IIVMVSLDYVVPT 373
R LG G + I+ + SL V+P
Sbjct: 66 KARRLGKAGSRLHVRIVGLFSLVAVIPA 93
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 28.8 bits (65), Expect = 5.6
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 33/147 (22%)
Query: 241 MRVYIGIWILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISP 300
+R ++ ++L++ +L+ L +++ + L + +
Sbjct: 4 LREFLKPFLLVLLVLLLLFLLVDLLRLLDDILSKGLPLADILRLLL---------LLLPS 54
Query: 301 ILLETLPLPTKENQPNTALFCTVLALGTF-----LIALYLRHFRNSKFLGRSARRALGD- 354
IL LPL L +L LG L AL G S +R L
Sbjct: 55 ILELILPL--------ALLLAVLLTLGRLARDSELTALRA--------AGISLKRLLRPV 98
Query: 355 --FGVPIAIIVMVSLDYVVPTYTEKLK 379
+ ++++ + +YVVP +KL+
Sbjct: 99 LILALLLSLLSFLLSEYVVPYANQKLE 125
>gnl|CDD|182164 PRK09953, wcaD, putative colanic acid biosynthesis protein;
Provisional.
Length = 404
Score = 28.7 bits (64), Expect = 5.7
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 187 VGISETLLATCISGVL--FALLAGQPL----------------IIIGTTGPLMLFDESLY 228
+ + + ++A I L F L GQ L IIIG + S +
Sbjct: 50 ISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPH 109
Query: 229 NFCKTNNIEYLTMRVYIGIWILIIALLVALIEGSVFVKIFTRF 271
N K YL + + + + + +A ++ L GS ++ +++
Sbjct: 110 NHRKILRFFYLVVGLVVALAAVEMAQII-LTGGSSIMESISKY 151
>gnl|CDD|203319 pfam05726, Pirin_C, Pirin C-terminal cupin domain. This region is
found the C-terminal half of the Pirin protein.
Length = 102
Score = 26.8 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 169 LSGAITFGGLMADKTNNLV----GISETLLATCISGVLFALLAGQPL 211
L G+ GG L G + A +G F LL G+PL
Sbjct: 27 LEGSGEVGGEDIIDEGRLAVLGPGDEIVVRAG--AGARFLLLGGEPL 71
>gnl|CDD|201180 pfam00361, Oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I),
various chains. This family is part of complex I which
catalyzes the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 270
Score = 28.0 bits (63), Expect = 8.0
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 186 LVGISETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNIEY----LTM 241
L+G+ LL +L A + G L L LY + T ++ + L
Sbjct: 13 LLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYLYGLTGSLSFTLLFLFG 72
Query: 242 RVYIGIWILIIALLVALI 259
G+ +L + LLVA +
Sbjct: 73 LNSNGLLLLSLLLLVAFL 90
>gnl|CDD|238877 cd01839, SGNH_arylesterase_like, SGNH_hydrolase subfamily, similar
to arylesterase (7-aminocephalosporanic
acid-deacetylating enzyme) of A. tumefaciens. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 208
Score = 27.6 bits (62), Expect = 8.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 87 INDIKRRFPFYASDITDGINC 107
ND+K F A++I G+
Sbjct: 89 TNDLKSYFNLSAAEIAQGLGA 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.143 0.425
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,806,371
Number of extensions: 2135425
Number of successful extensions: 3740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3698
Number of HSP's successfully gapped: 185
Length of query: 389
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 290
Effective length of database: 6,546,556
Effective search space: 1898501240
Effective search space used: 1898501240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)