RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17800
(389 letters)
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 86.0 bits (212), Expect = 8e-19
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 2 ERRDLLSAINEFLDCSIVLPPGDWERKALLPFRELKAKNEAIRRRQSRTQDAAEAQKLLL 61
R +LL ++ FLDCS+VLPP D + L + + E +RRR + ++
Sbjct: 303 SRGELLHSLEGFLDCSLVLPPTDAPSEQALL-SLVPVQRELLRRRYQSSPAKPDSS---- 357
Query: 62 LGEDGDKKPPGDDPLRRTRKPF 83
+ D DDPL++T + F
Sbjct: 358 FYKGLDLNGGPDDPLQQTGQLF 379
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion
transporter, transmembrane, synthetic peptide; NMR
{Synthetic} SCOP: j.35.1.1
Length = 43
Score = 70.6 bits (173), Expect = 4e-16
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 141 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADK 182
R+P+Y SDITD + Q +AA IF+YFAALS AITFGGL+ +K
Sbjct: 2 RYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLGEK 43
Score = 67.9 bits (166), Expect = 4e-15
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 93 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMG 132
R+P+Y SDITD + Q +AA IF+YFAALS AITFGGL+G
Sbjct: 2 RYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLG 41
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter,
transmembrane, synthetic peptide, electron transport;
NMR {Synthetic} SCOP: j.35.1.1
Length = 34
Score = 51.7 bits (124), Expect = 2e-09
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 9/42 (21%)
Query: 141 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADK 182
R+P+Y SDITD IF+YFAALS AITFGGL+ +K
Sbjct: 2 RYPYYLSDITD---------VIFIYFAALSPAITFGGLLGEK 34
Score = 49.1 bits (117), Expect = 2e-08
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 9/40 (22%)
Query: 93 RFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMG 132
R+P+Y SDITD IF+YFAALS AITFGGL+G
Sbjct: 2 RYPYYLSDITD---------VIFIYFAALSPAITFGGLLG 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 56/369 (15%), Positives = 96/369 (26%), Gaps = 120/369 (32%)
Query: 14 LDCSIVLPPGDWERKALLPFRELKAKNEAIRRRQSRT--QDAAEAQKLLLLGEDGDKKPP 71
L+ +++P + +L+ + I + D L+G+
Sbjct: 16 LEHVLLVPTASF-----FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK------- 63
Query: 72 GDDPLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLM 131
F G ++ G Q + F + L
Sbjct: 64 -----------FLGYVSS-------LVEPSKVGQFDQVLNL-CLTEFEN-----CY--LE 97
Query: 132 GRDLDQHDRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMADKTNNLVGISE 191
G D+ H + T + + + + Y A MA + + S
Sbjct: 98 GNDI--HALAAKLLQENDTTLVKTKELIKN---YITARI--------MAKRPFDKKSNSA 144
Query: 192 TLLATCISGV--LFALLAGQPLIIIGTTGPLMLFDE--SLYNFCKTNNIEYLTMRVYIGI 247
L G L A+ GQ G T F+E LY Y
Sbjct: 145 -LFRAVGEGNAQLVAIFGGQ-----GNTDD--YFEELRDLYQ-------------TY--- 180
Query: 248 WILIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFESVGKLFTMATISPILLETLP 307
V V + +L L+ K+FT + L
Sbjct: 181 --------------HVLVG---DLIKFSAETLSELIRTTLDAEKVFT---------QGLN 214
Query: 308 ----LPTKENQPNTALFCTVLALGTF-LIALY-LRHFRNS-KFLGRS----ARRALGDFG 356
L N P+ ++ + LI + L H+ + K LG + G G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 357 VPIAIIVMV 365
++ V
Sbjct: 273 HSQGLVTAV 281
Score = 35.4 bits (81), Expect = 0.033
Identities = 35/264 (13%), Positives = 70/264 (26%), Gaps = 87/264 (32%)
Query: 51 QDAAEAQKLLLLGEDGDKKPPGDDPLRRTRKPFGGLINDIKRRFPFYASDITDGINCQCI 110
+ + AQ + D + +G I DI P + G + I
Sbjct: 1637 KTSKAAQDVW---NRADNH---------FKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 111 AA--SIFMYFAALSGAITFGGLMGRDLDQHDRRFPFYAS----DITDGINCQ-CIAA--- 160
S ++ + G + + +++++H + F + T Q +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQ--FTQPALTLMEK 1741
Query: 161 SIF------------MYFA--------AL---SGAITF---------------------- 175
+ F FA AL + ++
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 176 -----GGLMADKTNNLV-GISETLLATCISGVLFA---LL-------AGQPLIIIGTTGP 219
G++A + S+ L + V L+ Q + G
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 220 LMLFDESLYNFCKTNNIEYLTMRV 243
L L NF K I+ + ++
Sbjct: 1862 LDTVTNVL-NFIKLQKIDIIELQK 1884
Score = 35.0 bits (80), Expect = 0.053
Identities = 47/296 (15%), Positives = 81/296 (27%), Gaps = 119/296 (40%)
Query: 131 MGRDLDQHDRRFPFYASDITDGINCQCIAASIFMYFAALSGAITFGGLMAD-KTNNLVGI 189
MG DL + A D+ + A T+G + D NN V +
Sbjct: 1631 MGMDL----YKTSKAAQDVWN-------RADNHFK-------DTYGFSILDIVINNPVNL 1672
Query: 190 SETLLATCISGVLFALLAGQPLIIIGTTGPLMLFDESLYNFCKTNNIEYLTMRVYIGIWI 249
+ + F G+ I M+F+ + KT
Sbjct: 1673 T----------IHFGGEKGKR---IRENYSAMIFETIVDGKLKTE--------------- 1704
Query: 250 LIIALLVALIEGSVFVKIFTRFTEEIFSSLISLLYIFES-VGKL----FT---MATISPI 301
KIF E S Y F S G L FT + +
Sbjct: 1705 ----------------KIFKEINEHSTS------YTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 302 LLETLPLPTKEN---QPN-----------TALFCT--VLALGTFLIALYLRHFRNSKFLG 345
E L K + AL V+++ + + + +R G
Sbjct: 1743 AFEDL----KSKGLIPADATFAGHSLGEYAALASLADVMSIES---LVEVVFYR-----G 1790
Query: 346 RSARRAL-------GDFGV----PIAIIVMVSLDYVVPTYTEKLKVPEG--LSPSN 388
+ + A+ ++G+ P + S + + E++ G + N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVN 1845
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Length = 26
Score = 33.8 bits (77), Expect = 0.003
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 110 IAASIFMYFAALSGAITFG 128
+AA IF+YFAALS AITFG
Sbjct: 3 LAAVIFIYFAALSPAITFG 21
Score = 33.8 bits (77), Expect = 0.003
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 158 IAASIFMYFAALSGAITFG 176
+AA IF+YFAALS AITFG
Sbjct: 3 LAAVIFIYFAALSPAITFG 21
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Length = 26
Score = 29.9 bits (67), Expect = 0.080
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 188 GISETLLATCISGVLFALLAG 208
G+SE L++T + G+LFALL
Sbjct: 2 GVSELLISTAVQGILFALLGA 22
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.28
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 35 ELKAKNEAIR----RRQSRTQ--DAAEAQKLLLLGEDGDK 68
L + E+IR ++ R Q DAA E K
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 30.1 bits (67), Expect = 0.85
Identities = 6/59 (10%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 25 W--ERKALLPFRELKAKNEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPPGDDPLRRTRK 81
W E++ L+ + A + + ++ A+ E+ +++ + + + +
Sbjct: 90 WREEQRK-----RLQELDAASKVMEQEWREKAKKDL-----EEWNQRQ--SEQVEKNKI 136
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.0 bits (66), Expect = 3.6
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 54 AEAQKLLLLGEDGDKKPPGDDPLRRTR---KPFGGLINDIKRRF 94
A+A+K +L G D + RTR F G++ ++R+
Sbjct: 369 AKARKAILEGADEQVHVRYRNRYGRTRSYYADFEGVLAFLQRKM 412
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 3.9
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 27 RKALLP-FRELKAKNEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPPGDDPLRRTRKPFGG 85
L+P + + E I + A K L+ + ++ P P+ P
Sbjct: 10 SSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVND 69
Query: 86 LINDIKRRF 94
I ++++ +
Sbjct: 70 TIENLRQAY 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.6 bits (65), Expect = 4.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 54 AEAQKLLLLGEDGDKKP----PGDDPLRRTRKPFGGLINDIKRRF 94
E +L G G+ +R F G+I +++RR+
Sbjct: 359 KEQLDKILYGSGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRY 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 28.2 bits (63), Expect = 4.2
Identities = 12/86 (13%), Positives = 19/86 (22%), Gaps = 22/86 (25%)
Query: 36 LKAKNEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPP---GDDPLRRTRKPFGGLINDIKR 92
L EA+ R + G P D+ L
Sbjct: 148 LDVPLEALAHR---------------IAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDA 192
Query: 93 RFPFYA-SDI---TDGINCQCIAASI 114
R Y + + I + S+
Sbjct: 193 RGEAYTKASARVSLENITLKLGYRSV 218
>3rlf_F Maltose transport system permease protein MALF; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F*
3pv0_F* 3puw_F* 3fh6_F
Length = 514
Score = 27.9 bits (62), Expect = 6.1
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 18/110 (16%)
Query: 264 FVKIFTRFTEEIFSSLISLLYIFESVG-----KLFTMATISPILLETLPLPTKENQPNTA 318
F + T L + G ++FT I L T
Sbjct: 236 FYQSITADGNWGDEKLSPGYTVT--TGWKNFTRVFTDEGIQKPFLAIFV--------WTV 285
Query: 319 LFCTVLALGTFLIALYLRHFRNSKFL-GRSARRALGDFGVPIAIIVMVSL 367
+F + T + + L + L G++ R L +P A+ +S+
Sbjct: 286 VFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVL--LILPYAVPSFISI 333
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.2
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 88 NDIKR---RFPFYASDITDGINCQCIAASI 114
+K+ YA D + I A++
Sbjct: 20 QALKKLQASLKLYADDSAPAL---AIKATM 46
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 27.6 bits (61), Expect = 7.5
Identities = 9/61 (14%), Positives = 22/61 (36%)
Query: 34 RELKAKNEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPPGDDPLRRTRKPFGGLINDIKRR 93
+ + E I + A K L+ + ++ P P+ P I ++++
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQA 77
Query: 94 F 94
+
Sbjct: 78 Y 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.425
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,069,682
Number of extensions: 375093
Number of successful extensions: 1009
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 29
Length of query: 389
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 294
Effective length of database: 4,049,298
Effective search space: 1190493612
Effective search space used: 1190493612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)