RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17800
         (389 letters)



>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 3   RRDLLSAINEFLDCSIVLPPGDWERKALLPFRELKAKNEAIRRRQ 47
           R +LL ++  FLDCS+VLPP D   +  L    +  + E +RRR 
Sbjct: 249 RGELLHSLEGFLDCSLVLPPTDAPSEQALL-SLVPVQRELLRRRY 292


>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 26.8 bits (59), Expect = 4.2
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 14/75 (18%)

Query: 174 TFGGLMADKTN--------NLVGISETLLATC------ISGVLFALLAGQPLIIIGTTGP 219
            +GG+   K N          +G+    +  C        G +  +L      +     P
Sbjct: 113 PYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRP 172

Query: 220 LMLFDESLYNFCKTN 234
            + + E +++ C   
Sbjct: 173 KLFYGELVHDNCPRL 187


>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 25.8 bits (56), Expect = 8.1
 Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 18/116 (15%)

Query: 40  NEAIRRRQSRTQDAAEAQKLLLLGEDGDKKPPGDDPLRRTRKPFGGLINDIKRRFPFYAS 99
            E  R+R     + A             + P          +P   +I ++KR+ P    
Sbjct: 13  GEIARKRA---SEVAPYPL--------PEPPSVPSFKEALLRPGLSVIAEVKRQSPSE-- 59

Query: 100 DITDGINCQCIAASIFMYFAALSGAITFGGLMGRDLDQHDR-----RFPFYASDIT 150
            +   ++    A +     A     +T     G  L    R       P    D  
Sbjct: 60  GLIREVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFV 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.425 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,444,176
Number of extensions: 66886
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 6
Length of query: 389
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,213,086
Effective search space: 366351972
Effective search space used: 366351972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)