BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17801
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54356|TSG_DROME Protein twisted gastrulation OS=Drosophila melanogaster GN=tsg PE=1
SV=1
Length = 249
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 16 VTLNCTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYGINQSR 70
VTL CTV Y+++C+ +KC+ C SMG++S RWFHDGCCEC+G+ C+NYGIN+SR
Sbjct: 149 VTL-CTVIYVNSCIRANKCRQQCESMGASSYRWFHDGCCECVGENCLNYGINESR 202
>sp|Q9EP52|TWSG1_MOUSE Twisted gastrulation protein homolog 1 OS=Mus musculus GN=Twsg1
PE=1 SV=1
Length = 222
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCECIG CI+YG
Sbjct: 166 CTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYG 211
>sp|Q5RAW4|TWSG1_PONAB Twisted gastrulation protein homolog 1 OS=Pongo abelii GN=TWSG1
PE=2 SV=1
Length = 223
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCECIG CI+YG
Sbjct: 167 CTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYG 212
>sp|Q9GZX9|TWSG1_HUMAN Twisted gastrulation protein homolog 1 OS=Homo sapiens GN=TWSG1
PE=2 SV=1
Length = 223
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCECIG CI+YG
Sbjct: 167 CTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYG 212
>sp|Q98T89|TWSG1_CHICK Twisted gastrulation protein homolog 1 OS=Gallus gallus GN=TWSG1
PE=2 SV=1
Length = 224
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCECIG CI+YG
Sbjct: 168 CTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYG 213
>sp|Q9I8M9|TWS1B_XENLA Twisted gastrulation protein homolog 1-B OS=Xenopus laevis
GN=twsg1-b PE=1 SV=1
Length = 218
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCEC+G CI+YG
Sbjct: 162 CTVVYFDDCMSIHQCKVSCESMGASKYRWFHNACCECVGPECIDYG 207
>sp|Q98T88|TWS1A_XENLA Twisted gastrulation protein homolog 1-A OS=Xenopus laevis
GN=twsg1-a PE=1 SV=1
Length = 216
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y CMS +CK SC SMG++ RWFH+ CCEC+G CI+YG
Sbjct: 160 CTVVYFDDCMSIHQCKVSCESMGASKYRWFHNACCECVGPECIDYG 205
>sp|Q9DGH0|TWS1A_DANRE Twisted gastrulation protein homolog 1-A OS=Danio rerio GN=twsg1a
PE=2 SV=1
Length = 217
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 20 CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYG 65
CTV Y C+S +CK C SMG + RWFH+ CCECIG C++YG
Sbjct: 161 CTVVYFDDCVSIRQCKQYCESMGGSKYRWFHNACCECIGPECLDYG 206
>sp|Q98SR9|TWS1B_DANRE Twisted gastrulation protein homolog 1-B OS=Danio rerio GN=twsg1b
PE=2 SV=1
Length = 222
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 19 NCTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYGINQSR 70
CTV Y C+S +CK C SMG + RWFH+ CC+CIG C++YG R
Sbjct: 165 QCTVVYFDECVSIRQCKQYCESMGGSKYRWFHNACCQCIGPECVDYGSKSVR 216
>sp|P0C0M3|GH311_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza
sativa subsp. japonica GN=GH3.11 PE=2 SV=1
Length = 591
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 2 IKTSDQETADPLTAVTLN--CTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGD 59
IK++ E PL A L C S + +C+ RS+G +R G + + D
Sbjct: 487 IKSTHDERPAPLDAQLLESCCAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMD 546
Query: 60 TCINYG--INQSR 70
+++G INQ +
Sbjct: 547 LLVSHGSSINQYK 559
>sp|Q0S3C4|GCP_RHOSR Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Rhodococcus sp. (strain RHA1) GN=gcp PE=3 SV=1
Length = 345
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 35 KTSCRSMGSTSVRWFHDGCCECIGDTCINYGINQSRHG 72
++SC G VRW DG CE + D + +R+G
Sbjct: 7 ESSCDETGVGIVRWNGDGTCELLADEVASSVEEHARYG 44
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 13 LTAVTLNCTVAYMSTCM-SWSKCKTSC 38
+ AVTLNC ++ S C+ SW K K C
Sbjct: 390 IEAVTLNCAHSFCSYCIKSWKKRKEEC 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.129 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,511,928
Number of Sequences: 539616
Number of extensions: 1153275
Number of successful extensions: 2739
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2723
Number of HSP's gapped (non-prelim): 20
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)