Query psy17801
Match_columns 97
No_of_seqs 46 out of 48
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 23:26:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04668 Tsg: Twisted gastrula 100.0 3E-50 6.4E-55 291.6 4.2 65 12-76 68-132 (132)
2 cd05895 Ig_Pro_neuregulin-1 Im 74.5 1.5 3.3E-05 26.0 0.8 15 38-52 5-22 (76)
3 cd05750 Ig_Pro_neuregulin Immu 63.7 3.6 7.7E-05 23.7 0.8 16 37-52 4-22 (75)
4 cd05752 Ig1_FcgammaR_like Frst 63.3 3.6 7.9E-05 25.7 0.9 8 45-52 32-39 (78)
5 cd05885 Ig2_Necl-4 Second immu 57.5 6.5 0.00014 25.7 1.3 16 37-52 5-23 (80)
6 cd05733 Ig6_L1-CAM_like Sixth 57.2 6 0.00013 23.9 1.0 15 38-52 5-21 (77)
7 cd04970 Ig6_Contactin_like Six 54.8 5.9 0.00013 24.0 0.7 15 38-52 7-25 (85)
8 cd05763 Ig_1 Subgroup of the i 53.9 6.8 0.00015 23.1 0.9 16 37-52 4-21 (75)
9 cd00107 Knot1 The "knottin" fo 52.3 13 0.00029 20.4 1.8 19 27-45 2-20 (33)
10 cd05760 Ig2_PTK7 Second immuno 49.4 6.7 0.00015 23.7 0.4 15 38-52 5-21 (77)
11 cd05857 Ig2_FGFR Second immuno 45.9 11 0.00023 22.4 0.9 10 43-52 23-32 (85)
12 cd05855 Ig_TrkB_d5 Fifth domai 45.5 12 0.00026 24.0 1.1 9 44-52 13-21 (79)
13 cd04967 Ig1_Contactin First Ig 45.4 8.9 0.00019 23.6 0.5 10 43-52 33-42 (91)
14 cd05848 Ig1_Contactin-5 First 44.4 10 0.00022 23.9 0.7 10 43-52 33-42 (94)
15 cd04978 Ig4_L1-NrCAM_like Four 43.8 11 0.00025 21.7 0.7 15 38-52 8-24 (76)
16 cd07693 Ig1_Robo First immunog 43.3 12 0.00027 22.0 0.9 10 43-52 30-39 (100)
17 cd05867 Ig4_L1-CAM_like Fourth 41.9 9.5 0.00021 22.7 0.2 15 38-52 8-24 (76)
18 cd05736 Ig2_Follistatin_like S 41.7 13 0.00028 21.9 0.7 16 37-52 4-21 (76)
19 cd05725 Ig3_Robo Third immunog 41.2 13 0.00029 21.4 0.8 15 38-52 5-21 (69)
20 cd05850 Ig1_Contactin-2 First 40.9 14 0.0003 23.3 0.8 10 43-52 33-42 (94)
21 PF01822 WSC: WSC domain; Int 39.8 20 0.00043 21.1 1.4 33 23-56 19-52 (82)
22 cd07691 Ig_CD3_gamma_delta Imm 39.7 13 0.00028 24.8 0.6 8 43-50 16-23 (69)
23 KOG1973|consensus 39.2 11 0.00025 29.3 0.3 13 45-60 241-253 (274)
24 PF00059 Lectin_C: Lectin C-ty 38.9 18 0.00038 21.2 1.1 16 29-44 3-18 (105)
25 cd05722 Ig1_Neogenin First imm 38.7 18 0.0004 22.2 1.1 10 43-52 28-37 (95)
26 COG2452 Predicted site-specifi 38.1 9.6 0.00021 29.9 -0.2 20 35-54 5-27 (193)
27 cd05746 Ig4_Peroxidasin Fourth 36.5 17 0.00037 21.2 0.7 15 38-52 5-21 (69)
28 cd05883 Ig2_Necl-2 Second immu 36.4 18 0.00039 23.8 0.9 16 37-52 5-23 (82)
29 cd05738 Ig2_RPTP_IIa_LAR_like 36.4 13 0.00027 22.2 0.1 15 38-52 5-21 (74)
30 cd04976 Ig2_VEGFR Second immun 35.7 24 0.00053 21.0 1.3 15 38-52 5-21 (71)
31 cd04969 Ig5_Contactin_like Fif 34.4 19 0.0004 21.1 0.6 9 44-52 16-24 (73)
32 smart00249 PHD PHD zinc finger 33.6 21 0.00045 18.7 0.7 9 46-54 21-29 (47)
33 cd05728 Ig4_Contactin-2-like F 33.2 19 0.00041 22.0 0.5 10 43-52 28-37 (85)
34 cd05854 Ig6_Contactin-2 Sixth 33.1 21 0.00045 22.2 0.7 15 38-52 7-25 (85)
35 cd05744 Ig_Myotilin_C_like Imm 32.4 29 0.00063 20.9 1.3 9 44-52 13-21 (75)
36 cd04975 Ig4_SCFR_like Fourth i 32.1 17 0.00036 23.9 0.2 10 43-52 33-42 (101)
37 cd05759 Ig2_KIRREL3-like Secon 31.6 23 0.0005 21.2 0.7 16 37-52 5-23 (82)
38 PF00628 PHD: PHD-finger; Int 29.9 23 0.0005 20.0 0.5 7 47-53 22-28 (51)
39 cd05856 Ig2_FGFRL1-like Second 29.8 22 0.00048 20.4 0.4 11 42-52 22-32 (82)
40 cd05853 Ig6_Contactin-4 Sixth 29.5 31 0.00066 22.4 1.1 10 43-52 16-25 (85)
41 cd05869 Ig5_NCAM-1 Fifth immun 29.3 21 0.00046 22.2 0.3 15 38-52 24-40 (97)
42 cd05745 Ig3_Peroxidasin Third 28.9 37 0.00081 20.0 1.3 15 38-52 9-25 (74)
43 cd05723 Ig4_Neogenin Fourth im 28.1 39 0.00085 19.9 1.3 15 38-52 6-22 (71)
44 cd05863 Ig2_VEGFR-3 Second imm 27.8 39 0.00085 20.7 1.3 9 44-52 13-21 (67)
45 cd05747 Ig5_Titin_like M5, fif 27.3 25 0.00054 21.6 0.4 9 44-52 33-41 (92)
46 cd03593 CLECT_NK_receptors_lik 27.1 99 0.0022 19.1 3.1 26 18-44 10-35 (116)
47 cd01328 FSL_SPARC Follistatin- 25.8 46 0.00099 22.7 1.5 30 58-88 10-41 (86)
48 cd04973 Ig1_FGFR First immunog 25.2 35 0.00075 20.6 0.7 24 12-52 8-31 (79)
49 cd05875 Ig6_hNeurofascin_like 24.7 48 0.001 20.1 1.3 16 37-52 4-21 (77)
50 cd05876 Ig3_L1-CAM Third immun 24.2 51 0.0011 19.4 1.3 15 38-52 5-21 (71)
51 cd05749 Ig2_Tyro3_like Second 24.1 33 0.00072 21.6 0.5 15 38-52 20-37 (81)
52 cd05757 Ig2_IL1R_like Second i 22.8 47 0.001 21.4 1.1 10 43-52 29-38 (92)
53 cd05729 Ig2_FGFR_like Second i 22.4 46 0.001 19.0 0.9 10 43-52 23-32 (85)
54 smart00034 CLECT C-type lectin 22.3 1.3E+02 0.0029 17.8 2.9 27 17-44 9-35 (126)
55 cd05868 Ig4_NrCAM Fourth immun 22.2 54 0.0012 19.7 1.2 15 38-52 8-24 (76)
56 cd05864 Ig2_VEGFR-2 Second imm 22.0 59 0.0013 19.8 1.3 10 43-52 12-21 (70)
57 cd07705 Ig2_Necl-1 Second immu 22.0 44 0.00096 20.9 0.8 15 38-52 6-23 (83)
58 cd05892 Ig_Myotilin_C C-termin 21.7 59 0.0013 20.0 1.3 9 44-52 13-21 (75)
59 cd05761 Ig2_Necl-1-4_like Seco 21.2 48 0.001 20.3 0.8 9 44-52 15-23 (82)
60 cd04971 Ig_TrKABC_d5 Fifth dom 20.7 57 0.0012 20.3 1.1 9 44-52 13-21 (81)
61 PRK10410 hypothetical protein; 20.6 57 0.0012 22.7 1.2 15 63-77 51-65 (100)
62 COG5141 PHD zinc finger-contai 20.5 53 0.0012 30.0 1.2 34 48-81 211-260 (669)
No 1
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=100.00 E-value=3e-50 Score=291.58 Aligned_cols=65 Identities=62% Similarity=1.354 Sum_probs=62.7
Q ss_pred cCcceeeeeEEEEcccccChHHHHHHHhhhCCCeeeeeecceecccCcccccccccccccCCCCC
Q psy17801 12 PLTAVTLNCTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDGCCECIGDTCINYGINQSRHGVNAR 76 (97)
Q Consensus 12 ~~~~~t~nCTV~Y~~qC~S~nkCr~sC~SmGAssYRWFHdGCCECVG~~ClnYG~nesrC~~Cpe 76 (97)
+.+.+++||||+||+|||||||||++|||||||||||||||||||||++|||||||||||++|||
T Consensus 68 ~~~~~t~nCTVvY~~~C~S~nkCr~sCeSmGAssYRWFHdgCCECVG~~CinYGinesrC~~Cpe 132 (132)
T PF04668_consen 68 PSNNITVNCTVVYFDQCMSWNKCRQSCESMGASSYRWFHDGCCECVGPTCINYGINESRCSNCPE 132 (132)
T ss_pred ccCCCccceEEEEhhhhcCHHHHHHHHHhcCcccceeeccchhhccCchhhhccCCcHhHhcCCC
Confidence 33679999999999999999999999999999999999999999999999999999999999997
No 2
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=74.53 E-value=1.5 Score=25.97 Aligned_cols=15 Identities=27% Similarity=1.055 Sum_probs=10.6
Q ss_pred HhhhCC---Ceeeeeecc
Q psy17801 38 CRSMGS---TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA---ssYRWFHdG 52 (97)
|+..|. ..|+|||||
T Consensus 5 C~a~~~~p~~~~~W~~~g 22 (76)
T cd05895 5 CETVSEYPSLRFKWFKNG 22 (76)
T ss_pred EecccCCCCCceEEEECC
Confidence 555543 479999996
No 3
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=63.69 E-value=3.6 Score=23.73 Aligned_cols=16 Identities=38% Similarity=1.030 Sum_probs=11.7
Q ss_pred HHhhhC---CCeeeeeecc
Q psy17801 37 SCRSMG---STSVRWFHDG 52 (97)
Q Consensus 37 sC~SmG---AssYRWFHdG 52 (97)
.|+..| ...++||+||
T Consensus 4 ~C~~~g~~P~p~~~W~k~g 22 (75)
T cd05750 4 KCEATSEYPSLRFKWFKDG 22 (75)
T ss_pred EEEccCCCCCceEEEEcCC
Confidence 356666 4578999996
No 4
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=63.33 E-value=3.6 Score=25.69 Aligned_cols=8 Identities=50% Similarity=1.572 Sum_probs=7.3
Q ss_pred eeeeeecc
Q psy17801 45 SVRWFHDG 52 (97)
Q Consensus 45 sYRWFHdG 52 (97)
.++|||||
T Consensus 32 ~~~W~kng 39 (78)
T cd05752 32 STQWYHNG 39 (78)
T ss_pred cEEEEECC
Confidence 59999998
No 5
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=57.47 E-value=6.5 Score=25.70 Aligned_cols=16 Identities=31% Similarity=0.893 Sum_probs=11.9
Q ss_pred HHhhhC---CCeeeeeecc
Q psy17801 37 SCRSMG---STSVRWFHDG 52 (97)
Q Consensus 37 sC~SmG---AssYRWFHdG 52 (97)
.|.+.| |+.||||.|+
T Consensus 5 ~C~s~~skP~a~i~W~k~~ 23 (80)
T cd05885 5 TCLSPRSKPAATLRWYRDR 23 (80)
T ss_pred EEeCCCccCCCeEEEEECC
Confidence 355555 5789999987
No 6
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=57.18 E-value=6 Score=23.88 Aligned_cols=15 Identities=27% Similarity=0.922 Sum_probs=11.4
Q ss_pred HhhhC--CCeeeeeecc
Q psy17801 38 CRSMG--STSVRWFHDG 52 (97)
Q Consensus 38 C~SmG--AssYRWFHdG 52 (97)
|+..| ..+|+|++||
T Consensus 5 C~~~G~P~P~v~W~k~g 21 (77)
T cd05733 5 CEAKGNPPPTFSWTRNG 21 (77)
T ss_pred eeCcccCCCeEEEEECC
Confidence 55566 4679999986
No 7
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=54.81 E-value=5.9 Score=23.99 Aligned_cols=15 Identities=20% Similarity=0.722 Sum_probs=10.3
Q ss_pred HhhhCCC----eeeeeecc
Q psy17801 38 CRSMGST----SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs----sYRWFHdG 52 (97)
|+..|.. .|+|+|||
T Consensus 7 C~~~g~P~p~i~~~W~~~g 25 (85)
T cd04970 7 CHASHDPTLDLTFTWSFNG 25 (85)
T ss_pred EEEecCCCCCeEEEEEECC
Confidence 4555543 57999996
No 8
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=53.91 E-value=6.8 Score=23.09 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=12.0
Q ss_pred HHhhhCCCe--eeeeecc
Q psy17801 37 SCRSMGSTS--VRWFHDG 52 (97)
Q Consensus 37 sC~SmGAss--YRWFHdG 52 (97)
.|+..|... ++|+++|
T Consensus 4 ~C~~~G~P~P~v~W~k~~ 21 (75)
T cd05763 4 ECAATGHPTPQIAWQKDG 21 (75)
T ss_pred EeecccccCCEEEEEeCC
Confidence 366667655 9999987
No 9
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=52.26 E-value=13 Score=20.36 Aligned_cols=19 Identities=37% Similarity=0.833 Sum_probs=16.3
Q ss_pred cccChHHHHHHHhhhCCCe
Q psy17801 27 TCMSWSKCKTSCRSMGSTS 45 (97)
Q Consensus 27 qC~S~nkCr~sC~SmGAss 45 (97)
.|.+.+.|...|..-||++
T Consensus 2 ~C~~~~~C~~~Ck~~g~~~ 20 (33)
T cd00107 2 TCFSDSYCDKECKKKGASG 20 (33)
T ss_pred cCCCchhHHHHHhHcCCCc
Confidence 4788899999999999874
No 10
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=49.44 E-value=6.7 Score=23.65 Aligned_cols=15 Identities=40% Similarity=1.083 Sum_probs=10.7
Q ss_pred HhhhCCC--eeeeeecc
Q psy17801 38 CRSMGST--SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs--sYRWFHdG 52 (97)
|+..|-. .++||+||
T Consensus 5 C~~~g~P~p~v~W~k~g 21 (77)
T cd05760 5 CHIDGHPRPTYQWFRDG 21 (77)
T ss_pred EEeeecCCCcEEEEECC
Confidence 5556644 59999995
No 11
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=45.85 E-value=11 Score=22.37 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=7.9
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
..+++||+||
T Consensus 23 ~p~i~W~k~g 32 (85)
T cd05857 23 TPTMRWLKNG 32 (85)
T ss_pred CCEEEEEECC
Confidence 4569999985
No 12
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=45.53 E-value=12 Score=24.01 Aligned_cols=9 Identities=44% Similarity=1.531 Sum_probs=7.7
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..++|||||
T Consensus 13 Pti~W~kng 21 (79)
T cd05855 13 PTLQWFHEG 21 (79)
T ss_pred CceEEEECC
Confidence 468999998
No 13
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=45.39 E-value=8.9 Score=23.57 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=8.3
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...|+||++|
T Consensus 33 ~p~i~W~k~~ 42 (91)
T cd04967 33 PPTYRWLMNG 42 (91)
T ss_pred CCEEEEEECC
Confidence 4589999986
No 14
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=44.45 E-value=10 Score=23.92 Aligned_cols=10 Identities=30% Similarity=0.993 Sum_probs=8.8
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...|.|||||
T Consensus 33 ~P~i~W~k~g 42 (94)
T cd05848 33 VPTYRWLRNG 42 (94)
T ss_pred CCEEEEEECC
Confidence 5789999997
No 15
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.77 E-value=11 Score=21.71 Aligned_cols=15 Identities=27% Similarity=0.849 Sum_probs=10.3
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|- ..++||+||
T Consensus 8 C~~~g~P~p~i~W~~~g 24 (76)
T cd04978 8 CEAEGIPQPTITWRLNG 24 (76)
T ss_pred EEceeeCCCEEEEEECC
Confidence 444563 469999986
No 16
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=43.31 E-value=12 Score=22.03 Aligned_cols=10 Identities=20% Similarity=1.109 Sum_probs=8.1
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...++||+||
T Consensus 30 ~p~i~W~k~g 39 (100)
T cd07693 30 TPTIQWLKNG 39 (100)
T ss_pred CCEEEEEECC
Confidence 3469999987
No 17
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=41.90 E-value=9.5 Score=22.67 Aligned_cols=15 Identities=27% Similarity=0.815 Sum_probs=10.6
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..+.|++||
T Consensus 8 C~~~G~P~p~i~W~k~g 24 (76)
T cd05867 8 CQVEGIPTPNITWSING 24 (76)
T ss_pred EEeeEeCCCeEEEEECC
Confidence 555565 459999986
No 18
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=41.65 E-value=13 Score=21.85 Aligned_cols=16 Identities=25% Similarity=0.893 Sum_probs=11.8
Q ss_pred HHhhhCCC--eeeeeecc
Q psy17801 37 SCRSMGST--SVRWFHDG 52 (97)
Q Consensus 37 sC~SmGAs--sYRWFHdG 52 (97)
.|+..|.. .++|+|++
T Consensus 4 ~C~v~g~P~p~v~W~k~~ 21 (76)
T cd05736 4 RCHAEGIPLPRLTWLKNG 21 (76)
T ss_pred EeEeeecCCCEEEEEECC
Confidence 46666754 89999985
No 19
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=41.16 E-value=13 Score=21.44 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=10.7
Q ss_pred HhhhCCC--eeeeeecc
Q psy17801 38 CRSMGST--SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs--sYRWFHdG 52 (97)
|+..|.. .++|++++
T Consensus 5 C~~~g~P~p~v~W~k~~ 21 (69)
T cd05725 5 CEVGGDPVPTVLWRKED 21 (69)
T ss_pred EECccCCCCEEEEEECC
Confidence 5566644 59999984
No 20
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=40.93 E-value=14 Score=23.26 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=8.3
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...|+|++||
T Consensus 33 ~p~i~W~~~g 42 (94)
T cd05850 33 PATYRWKMNG 42 (94)
T ss_pred CCEEEEEECC
Confidence 4589999986
No 21
>PF01822 WSC: WSC domain; InterPro: IPR002889 The WSC domain is a putative carbohydrate binding domain. The domain contains up to eight conserved cysteine residues that may be involved in disulphide bridges. The Trichoderma harzianum beta-1,3 exoglucanase contains two copies of the WSC domain, while the yeast SLG1 protein contains only one.
Probab=39.84 E-value=20 Score=21.06 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=22.5
Q ss_pred EEcccccChHHHHHHHhhhCCCeeeeeecc-eecc
Q psy17801 23 AYMSTCMSWSKCKTSCRSMGSTSVRWFHDG-CCEC 56 (97)
Q Consensus 23 ~Y~~qC~S~nkCr~sC~SmGAssYRWFHdG-CCEC 56 (97)
.+.+.=|+..+|.+.|...| ..|--..+| =|-|
T Consensus 19 ~~~~~~~t~~~C~~~C~~~g-~~~agl~~g~~C~C 52 (82)
T PF01822_consen 19 SSSSDDMTPEKCAEHCRAKG-YPYAGLENGNECYC 52 (82)
T ss_pred cccCCCCCHHHHHHhcCcCC-CceEEEecCCEEEc
Confidence 45566789999999999776 234444555 4555
No 22
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=39.73 E-value=13 Score=24.84 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=7.0
Q ss_pred CCeeeeee
Q psy17801 43 STSVRWFH 50 (97)
Q Consensus 43 AssYRWFH 50 (97)
+++++||+
T Consensus 16 ~tsi~W~k 23 (69)
T cd07691 16 ATNITWKK 23 (69)
T ss_pred CCcEEEec
Confidence 48899999
No 23
>KOG1973|consensus
Probab=39.24 E-value=11 Score=29.28 Aligned_cols=13 Identities=38% Similarity=1.096 Sum_probs=9.3
Q ss_pred eeeeeecceecccCcc
Q psy17801 45 SVRWFHDGCCECIGDT 60 (97)
Q Consensus 45 sYRWFHdGCCECVG~~ 60 (97)
.|.|||-. |||-+
T Consensus 241 ~~eWFH~~---CVGL~ 253 (274)
T KOG1973|consen 241 PIEWFHFT---CVGLK 253 (274)
T ss_pred CcceEEEe---ccccc
Confidence 48999975 56644
No 24
>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....
Probab=38.93 E-value=18 Score=21.18 Aligned_cols=16 Identities=38% Similarity=1.007 Sum_probs=12.6
Q ss_pred cChHHHHHHHhhhCCC
Q psy17801 29 MSWSKCKTSCRSMGST 44 (97)
Q Consensus 29 ~S~nkCr~sC~SmGAs 44 (97)
++|...++.|+++||.
T Consensus 3 ~~~~~A~~~C~~~~~~ 18 (105)
T PF00059_consen 3 MTWEEAQQYCQSMGAH 18 (105)
T ss_dssp EEHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHhcCCCE
Confidence 4677888888888874
No 25
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=38.71 E-value=18 Score=22.22 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=8.9
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
+..|+|+|||
T Consensus 28 ~p~i~W~k~g 37 (95)
T cd05722 28 PPKIEWKKDG 37 (95)
T ss_pred CCEEEEEECC
Confidence 5799999997
No 26
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=38.09 E-value=9.6 Score=29.92 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=15.9
Q ss_pred HHHHhhhCCC---eeeeeeccee
Q psy17801 35 KTSCRSMGST---SVRWFHDGCC 54 (97)
Q Consensus 35 r~sC~SmGAs---sYRWFHdGCC 54 (97)
+..|+.+|-| -||||+.|=-
T Consensus 5 ~e~~~~lgis~~Tl~rw~r~G~i 27 (193)
T COG2452 5 KEACQLLGISYSTLLRWIREGKI 27 (193)
T ss_pred HHHHHHhCcCHHHHHHHHHcCcc
Confidence 5688999976 5999999843
No 27
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=36.53 E-value=17 Score=21.23 Aligned_cols=15 Identities=33% Similarity=1.021 Sum_probs=10.5
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+.-|. ..++|++||
T Consensus 5 C~~~g~P~p~i~W~k~g 21 (69)
T cd05746 5 CSAQGDPEPTITWNKDG 21 (69)
T ss_pred ecceEeCCCEEEEEECC
Confidence 444454 479999987
No 28
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=36.41 E-value=18 Score=23.84 Aligned_cols=16 Identities=31% Similarity=1.070 Sum_probs=12.1
Q ss_pred HHhhhC---CCeeeeeecc
Q psy17801 37 SCRSMG---STSVRWFHDG 52 (97)
Q Consensus 37 sC~SmG---AssYRWFHdG 52 (97)
.|+|.| |...|||.++
T Consensus 5 ~C~s~gSkP~A~I~W~k~~ 23 (82)
T cd05883 5 NCTAMASKPAATIRWFKGN 23 (82)
T ss_pred EEEecCCCCCCEEEEEECC
Confidence 466777 4689999876
No 29
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=36.41 E-value=13 Score=22.20 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=11.1
Q ss_pred HhhhCCC--eeeeeecc
Q psy17801 38 CRSMGST--SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs--sYRWFHdG 52 (97)
|+..|.. .+.||+|+
T Consensus 5 C~~~G~P~p~v~W~k~~ 21 (74)
T cd05738 5 CAASGNPDPEITWFKDF 21 (74)
T ss_pred EEEeEecCCEEEEEECC
Confidence 5666755 59999985
No 30
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=35.66 E-value=24 Score=21.00 Aligned_cols=15 Identities=13% Similarity=0.722 Sum_probs=10.1
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..+.|||||
T Consensus 5 c~v~g~P~p~v~W~k~g 21 (71)
T cd04976 5 VKVKAYPPPEIQWYKNG 21 (71)
T ss_pred eEEEEeCCCEEEEEECC
Confidence 444443 468999997
No 31
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=34.40 E-value=19 Score=21.14 Aligned_cols=9 Identities=11% Similarity=0.575 Sum_probs=7.6
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
.++.|++++
T Consensus 16 p~v~W~k~~ 24 (73)
T cd04969 16 PTISWSKGT 24 (73)
T ss_pred CEEEEEECC
Confidence 489999986
No 32
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=33.15 E-value=19 Score=21.99 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=8.1
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...+.||+||
T Consensus 28 ~p~v~W~k~g 37 (85)
T cd05728 28 RPAYRWLKNG 37 (85)
T ss_pred CCEEEEEECC
Confidence 4579999986
No 34
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=33.05 E-value=21 Score=22.21 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=10.3
Q ss_pred HhhhCCC----eeeeeecc
Q psy17801 38 CRSMGST----SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs----sYRWFHdG 52 (97)
|...|-. +++|++||
T Consensus 7 C~a~g~P~p~~~v~W~~~g 25 (85)
T cd05854 7 CHASHDPTMDLTFTWSLDD 25 (85)
T ss_pred EEEecCCCCCeEEEEEECC
Confidence 4445553 58999996
No 35
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=32.44 E-value=29 Score=20.87 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=7.8
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..+.||||+
T Consensus 13 P~v~W~k~~ 21 (75)
T cd05744 13 PQIFWKKNN 21 (75)
T ss_pred CeEEEEECC
Confidence 578999998
No 36
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=32.15 E-value=17 Score=23.89 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=8.9
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
+..++||.||
T Consensus 33 ~p~v~W~Kdg 42 (101)
T cd04975 33 PPHINWTYDN 42 (101)
T ss_pred CCccEEEeCC
Confidence 6789999998
No 37
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=31.57 E-value=23 Score=21.19 Aligned_cols=16 Identities=44% Similarity=1.236 Sum_probs=11.7
Q ss_pred HHhhhCC---Ceeeeeecc
Q psy17801 37 SCRSMGS---TSVRWFHDG 52 (97)
Q Consensus 37 sC~SmGA---ssYRWFHdG 52 (97)
.|...|+ ..+.||+||
T Consensus 5 ~C~v~g~~P~~~v~W~~~g 23 (82)
T cd05759 5 TCRARGAKPAAEIIWFRDG 23 (82)
T ss_pred EEEEeCccCCCEEEEEECC
Confidence 3666663 478999998
No 38
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.90 E-value=23 Score=20.02 Aligned_cols=7 Identities=57% Similarity=1.977 Sum_probs=5.6
Q ss_pred eeeecce
Q psy17801 47 RWFHDGC 53 (97)
Q Consensus 47 RWFHdGC 53 (97)
+|||-.|
T Consensus 22 ~~~H~~C 28 (51)
T PF00628_consen 22 RWYHQEC 28 (51)
T ss_dssp CEEETTT
T ss_pred hhhCccc
Confidence 7999764
No 39
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=29.78 E-value=22 Score=20.43 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=8.5
Q ss_pred CCCeeeeeecc
Q psy17801 42 GSTSVRWFHDG 52 (97)
Q Consensus 42 GAssYRWFHdG 52 (97)
....++||++|
T Consensus 22 p~p~i~W~k~~ 32 (82)
T cd05856 22 PRPDITWLKDN 32 (82)
T ss_pred CCCcEEEEECC
Confidence 45679999975
No 40
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=29.55 E-value=31 Score=22.36 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=8.2
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
--.|+|+|||
T Consensus 16 ~~~~~W~~dg 25 (85)
T cd05853 16 DIVFTWSFNG 25 (85)
T ss_pred CcEEEEEECC
Confidence 3469999998
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=29.30 E-value=21 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.756 Sum_probs=10.5
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..++||+++
T Consensus 24 C~~~G~P~P~v~W~~~~ 40 (97)
T cd05869 24 CEASGDPIPSITWRTST 40 (97)
T ss_pred EEeeEeCCCEEEEEECC
Confidence 444453 689999986
No 42
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=28.86 E-value=37 Score=19.96 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=10.3
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..++||+||
T Consensus 9 C~~~g~P~p~i~W~k~g 25 (74)
T cd05745 9 CEAQGYPQPVIAWTKGG 25 (74)
T ss_pred eECCEecCCEEEEEECC
Confidence 455553 479999976
No 43
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=28.09 E-value=39 Score=19.85 Aligned_cols=15 Identities=33% Similarity=1.075 Sum_probs=10.8
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..++||+||
T Consensus 6 C~~~G~P~p~v~W~k~g 22 (71)
T cd05723 6 CEVTGKPTPTVKWVKNG 22 (71)
T ss_pred EEEEEeCCCEEEEEECC
Confidence 444453 589999987
No 44
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=27.77 E-value=39 Score=20.73 Aligned_cols=9 Identities=33% Similarity=1.224 Sum_probs=7.5
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..+.||+||
T Consensus 13 P~v~W~kdg 21 (67)
T cd05863 13 PEFQWYKDG 21 (67)
T ss_pred CEEEEEECC
Confidence 468999997
No 45
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=27.32 E-value=25 Score=21.57 Aligned_cols=9 Identities=33% Similarity=1.128 Sum_probs=7.3
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..++||++|
T Consensus 33 p~v~W~k~g 41 (92)
T cd05747 33 PTVTWMREG 41 (92)
T ss_pred CEEEEEECC
Confidence 459999986
No 46
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=27.08 E-value=99 Score=19.06 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=21.7
Q ss_pred eeeEEEEcccccChHHHHHHHhhhCCC
Q psy17801 18 LNCTVAYMSTCMSWSKCKTSCRSMGST 44 (97)
Q Consensus 18 ~nCTV~Y~~qC~S~nkCr~sC~SmGAs 44 (97)
-.|-.++... ++|..-++.|+.+||.
T Consensus 10 ~~Cy~~~~~~-~~w~~A~~~C~~~g~~ 35 (116)
T cd03593 10 NKCYYFSMEK-KTWNESKEACSSKNSS 35 (116)
T ss_pred CEEEEEEcCC-CCHHHHHHHHHhCCCc
Confidence 4677777767 8999999999999985
No 47
>cd01328 FSL_SPARC Follistatin-like SPARC (secreted protein, acidic, and rich in cysteines) domain; SPARC/BM-40/osteonectin is a multifunctional glycoprotein which modulates cellular interaction with the extracellular matrix by its binding to structural matrix proteins such as collagen and vitronectin. The protein it composed of an N-terminal acidic region, a follistatin (FS) domain and an EF-hand calcium binding domain. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a small hydrophobic core of alpha/beta structure (Kazal domain) and has five disulfide bonds and a conserved N-glycosylation site. The FSL_SPARC domain is a member of the superfamily of kazal-like proteinase inhibitors and follistatin-like proteins.
Probab=25.78 E-value=46 Score=22.66 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=16.2
Q ss_pred CcccccccccccccCCCCCC-Ccccc-ceeccC
Q psy17801 58 GDTCINYGINQSRHGVNARP-RAAVW-ARPVCG 88 (97)
Q Consensus 58 G~~ClnYG~nesrC~~Cpe~-~~~v~-~~p~~~ 88 (97)
|..|.==-.+++.|. |+++ ....+ .+||||
T Consensus 10 G~~C~~d~~~~p~Cv-C~~~Cp~~~~~~~~VCG 41 (86)
T cd01328 10 GKVCEVDDENTPKCV-CIDPCPEEVDDRRKVCT 41 (86)
T ss_pred CCEeeECCCCCeEEe-cCCcCCCCCCCCCceeC
Confidence 444542134677775 6654 22222 389998
No 48
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=25.25 E-value=35 Score=20.58 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=15.9
Q ss_pred cCcceeeeeEEEEcccccChHHHHHHHhhhCCCeeeeeecc
Q psy17801 12 PLTAVTLNCTVAYMSTCMSWSKCKTSCRSMGSTSVRWFHDG 52 (97)
Q Consensus 12 ~~~~~t~nCTV~Y~~qC~S~nkCr~sC~SmGAssYRWFHdG 52 (97)
+-...++.|.+.- . ...+.|++||
T Consensus 8 ~G~~v~l~C~~~~----------------~-~~~v~W~k~g 31 (79)
T cd04973 8 PGDLLQLRCRLRD----------------D-VQSINWTKDG 31 (79)
T ss_pred CCCCEEEEEEecC----------------C-CceEEEeeCC
Confidence 3346788888641 1 1369999996
No 49
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=24.71 E-value=48 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.914 Sum_probs=11.6
Q ss_pred HHhhhCC--Ceeeeeecc
Q psy17801 37 SCRSMGS--TSVRWFHDG 52 (97)
Q Consensus 37 sC~SmGA--ssYRWFHdG 52 (97)
.|+..|. ..++|++||
T Consensus 4 ~C~~~G~P~P~v~W~k~g 21 (77)
T cd05875 4 ECEAKGNPVPTFQWTRNG 21 (77)
T ss_pred EEeccccCCCEEEEEECC
Confidence 3566664 479999987
No 50
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=24.23 E-value=51 Score=19.37 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=10.5
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|..-|. ..++|++++
T Consensus 5 C~~~G~P~P~v~W~k~~ 21 (71)
T cd05876 5 CIAEGLPTPEVHWDRID 21 (71)
T ss_pred EEeeEecCCeEEEEECC
Confidence 444454 479999996
No 51
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=24.14 E-value=33 Score=21.59 Aligned_cols=15 Identities=27% Similarity=1.101 Sum_probs=11.1
Q ss_pred HhhhCCC---eeeeeecc
Q psy17801 38 CRSMGST---SVRWFHDG 52 (97)
Q Consensus 38 C~SmGAs---sYRWFHdG 52 (97)
|+..|-. .+.|+|||
T Consensus 20 C~a~G~P~P~~I~W~k~g 37 (81)
T cd05749 20 CQAVGPPEPVEILWWQGG 37 (81)
T ss_pred EEeeeecCCeEEEEEECC
Confidence 4556763 69999998
No 52
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=22.76 E-value=47 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.4
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...++||||+
T Consensus 29 ~p~i~Wyk~~ 38 (92)
T cd05757 29 LPPVQWYKDC 38 (92)
T ss_pred CCcEEEeECC
Confidence 3589999998
No 53
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=22.40 E-value=46 Score=18.99 Aligned_cols=10 Identities=30% Similarity=1.079 Sum_probs=7.9
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
...+.||+++
T Consensus 23 ~~~v~W~k~~ 32 (85)
T cd05729 23 RPTITWLKDG 32 (85)
T ss_pred CCeEEEEECC
Confidence 4568999986
No 54
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=22.31 E-value=1.3e+02 Score=17.83 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=20.6
Q ss_pred eeeeEEEEcccccChHHHHHHHhhhCCC
Q psy17801 17 TLNCTVAYMSTCMSWSKCKTSCRSMGST 44 (97)
Q Consensus 17 t~nCTV~Y~~qC~S~nkCr~sC~SmGAs 44 (97)
...|-.++... ++|..-++.|+.+|+.
T Consensus 9 ~~~Cy~~~~~~-~~~~~A~~~C~~~~~~ 35 (126)
T smart00034 9 GGKCYKFSTEK-KTWADAQAFCQSLGAH 35 (126)
T ss_pred CCEEEEEECCc-cCHHHHHHHHHhcCCE
Confidence 34566666666 9999999999998853
No 55
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=22.23 E-value=54 Score=19.66 Aligned_cols=15 Identities=40% Similarity=1.165 Sum_probs=10.4
Q ss_pred HhhhCC--Ceeeeeecc
Q psy17801 38 CRSMGS--TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA--ssYRWFHdG 52 (97)
|+..|. ..++|++||
T Consensus 8 C~a~G~P~P~i~W~k~g 24 (76)
T cd05868 8 CRANGNPKPSISWLTNG 24 (76)
T ss_pred EEeeEeCCCeEEEEECC
Confidence 444444 489999996
No 56
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=21.96 E-value=59 Score=19.82 Aligned_cols=10 Identities=30% Similarity=1.182 Sum_probs=8.2
Q ss_pred CCeeeeeecc
Q psy17801 43 STSVRWFHDG 52 (97)
Q Consensus 43 AssYRWFHdG 52 (97)
..+++||+||
T Consensus 12 ~P~v~W~k~g 21 (70)
T cd05864 12 PPEVKWYKNG 21 (70)
T ss_pred CCEEEEEECC
Confidence 3578999998
No 57
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=21.95 E-value=44 Score=20.88 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=11.3
Q ss_pred HhhhCC---Ceeeeeecc
Q psy17801 38 CRSMGS---TSVRWFHDG 52 (97)
Q Consensus 38 C~SmGA---ssYRWFHdG 52 (97)
|.+.|+ ...+|+.||
T Consensus 6 C~a~g~~P~~~ItW~k~g 23 (83)
T cd07705 6 CTSSGSKPAANIKWRKGD 23 (83)
T ss_pred EEecCccCCCEeEEEECC
Confidence 555565 689999988
No 58
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=21.72 E-value=59 Score=20.00 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=7.6
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..+.||||+
T Consensus 13 P~i~W~k~~ 21 (75)
T cd05892 13 PKIFWKRNN 21 (75)
T ss_pred CeEEEEECC
Confidence 568999998
No 59
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=21.19 E-value=48 Score=20.34 Aligned_cols=9 Identities=33% Similarity=1.180 Sum_probs=7.9
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..++||.+|
T Consensus 15 ~~v~W~~~~ 23 (82)
T cd05761 15 ATIRWFKGD 23 (82)
T ss_pred CeEEEEECC
Confidence 588999997
No 60
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=20.67 E-value=57 Score=20.29 Aligned_cols=9 Identities=33% Similarity=1.379 Sum_probs=7.5
Q ss_pred Ceeeeeecc
Q psy17801 44 TSVRWFHDG 52 (97)
Q Consensus 44 ssYRWFHdG 52 (97)
..++||.||
T Consensus 13 P~v~W~k~g 21 (81)
T cd04971 13 PTLTWYHNG 21 (81)
T ss_pred CcEEEEECC
Confidence 468999988
No 61
>PRK10410 hypothetical protein; Provisional
Probab=20.64 E-value=57 Score=22.74 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=13.1
Q ss_pred cccccccccCCCCCC
Q psy17801 63 NYGINQSRHGVNARP 77 (97)
Q Consensus 63 nYG~nesrC~~Cpe~ 77 (97)
.||.+.+.|+.||.+
T Consensus 51 p~ge~Kp~C~~C~ih 65 (100)
T PRK10410 51 PFGEEKPTCKKCPVH 65 (100)
T ss_pred CCCCCCCCCCCCCCc
Confidence 489999999999965
No 62
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=20.53 E-value=53 Score=30.01 Aligned_cols=34 Identities=32% Similarity=0.623 Sum_probs=24.1
Q ss_pred eeecceecccCccccc---------------ccccccc-cCCCCCCCccc
Q psy17801 48 WFHDGCCECIGDTCIN---------------YGINQSR-HGVNARPRAAV 81 (97)
Q Consensus 48 WFHdGCCECVG~~Cln---------------YG~nesr-C~~Cpe~~~~v 81 (97)
=|-|||--||-..|-. ||.++.+ |+.||....+.
T Consensus 211 VfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaF 260 (669)
T COG5141 211 VFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAF 260 (669)
T ss_pred EEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCce
Confidence 4777887777777732 6667777 89999775543
Done!