RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17801
         (97 letters)



>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
           structural genomics, ssgcid; 1.70A {Mycobacterium
           smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
          Length = 454

 Score = 25.3 bits (56), Expect = 4.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 86  VCGGSMMGA 94
           VCG +M+GA
Sbjct: 446 VCGQAMLGA 454


>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
           2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
           1ja3_A 1p1z_D
          Length = 203

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 29  MSWSKCKTSCRSMGST 44
            +WS CK +C+  G  
Sbjct: 99  TTWSGCKANCQHYGVP 114


>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
           receptor, immune system; 2.50A {Mus musculus}
          Length = 190

 Score = 24.5 bits (53), Expect = 6.9
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 29  MSWSKCKTSCRSMGSTSV 46
            +WS CK +C+    + +
Sbjct: 86  KTWSGCKQTCQISSLSLL 103


>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
          lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
          musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
          Length = 142

 Score = 24.4 bits (53), Expect = 7.1
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 29 MSWSKCKTSCRSMGST 44
           SW   K  C  +G+ 
Sbjct: 36 NSWYGSKRHCSQLGAH 51


>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A
          {Homo sapiens}
          Length = 118

 Score = 23.9 bits (52), Expect = 8.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 26 STCMSWSKCKTSCRSMGST 44
          ++  SW++ +  C+  GST
Sbjct: 18 TSESSWNESRDFCKGKGST 36


>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
          lectin-like domain, membrane, immune; 1.64A {Homo
          sapiens}
          Length = 132

 Score = 23.9 bits (52), Expect = 9.9
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 29 MSWSKCKTSCRSMGST 44
            W   + +C   GST
Sbjct: 23 SIWHTSQENCLKEGST 38


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.129    0.445 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,449,526
Number of extensions: 71402
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 55
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)