BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17802
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BH7|A Chain A, A Low Energy Structure For The Final Cytoplasmic Loop Of
           Band 3, Nmr, Minimized Average Structure
          Length = 33

 Score = 36.2 bits (82), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 239 QFFERLKLFLMPTKHHSQAAYVRRVATSKMHL 270
           Q F+R+ L   P K+H    YV+RV T +MHL
Sbjct: 2   QLFDRILLLFKPPKYHPDVPYVKRVKTWRMHL 33


>pdb|3SGI|A Chain A, Crystal Structure Of Dna Ligase A Brct Domain Deleted
           Mutant Of Mycobacterium Tuberculosis
          Length = 615

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 17/83 (20%)

Query: 80  LIALYLRHFRNSKFLGRSARRALG-DFGVPIAIIVMVSLDYVVPTYTEKLKVPEGLSPSN 138
           L+AL +RH      +G +A RAL  +FG         SLD +    T++L   EG+ P+ 
Sbjct: 529 LVALSIRH------VGPTAARALATEFG---------SLDAIAAASTDQLAAVEGVGPTI 573

Query: 139 PACVATTTTID-HGTSLRPWTIA 160
            A V     +D H   +  W  A
Sbjct: 574 AAAVTEWFAVDWHREIVDKWRAA 596


>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
           Thermotoga Maritima At 1.83 A Resolution
 pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
           Thermotoga Maritima At 1.83 A Resolution
          Length = 101

 Score = 28.5 bits (62), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 153 SLRPWTIAEKTLSPISWYYG--------QGSIERTHAPGEKPHIIE 190
           S+  W I EK +S   WYY         +G +E T   G+K ++IE
Sbjct: 29  SVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKK-YVIE 73


>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga
           Maritima. Ontario Centre For Structural Proteomics
           Target Tm1112_1_89; Northeast Structural Genomics
           Consortium Target Vt74.
 pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
          Length = 89

 Score = 28.5 bits (62), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 153 SLRPWTIAEKTLSPISWYYG--------QGSIERTHAPGEKPHIIE 190
           S+  W I EK +S   WYY         +G +E T   G+K ++IE
Sbjct: 17  SVEKWPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKK-YVIE 61


>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
           Bacillus Thuringiensis At 2.5 Angstroms Resolution
          Length = 584

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2   SLQEYCSPNLTASTMMRSPVSSALLAPQ---RDLNFSDSESNFTNQMATISPILLETLPL 58
           ++++Y S     S+  ++PVSS     Q   R+L FS +ES+F N M + +    E L L
Sbjct: 79  NVEDYVS---ALSSWQKNPVSSRNPHSQGRIREL-FSQAESHFRNSMPSFAISGYEVLFL 134

Query: 59  PTKENQPNTALF 70
            T     NT LF
Sbjct: 135 TTYAQAANTHLF 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,406,881
Number of Sequences: 62578
Number of extensions: 300559
Number of successful extensions: 651
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)