Query psy17802
Match_columns 332
No_of_seqs 128 out of 479
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh7_A BAND 3; membrane protei 99.0 7.3E-12 2.5E-16 82.5 -2.6 33 238-270 1-33 (33)
2 3qe7_A Uracil permease; uracil 17.1 68 0.0023 31.4 2.8 45 69-122 156-200 (429)
3 3sok_A Fimbrial protein; pilus 8.9 1.3E+02 0.0046 24.6 1.7 25 271-298 1-25 (151)
4 1oqw_A Fimbrial protein; type 8.7 1.4E+02 0.0048 24.1 1.7 24 271-297 1-24 (144)
5 2kr6_A Presenilin-1; protease, 6.7 2.5E+02 0.0085 24.5 2.4 34 200-233 120-159 (176)
6 1kf6_D Fumarate reductase 13 k 6.4 2.3E+02 0.0077 23.3 1.9 27 280-306 15-44 (119)
7 1g6u_A Domain swapped dimer; d 5.2 1.1E+02 0.0039 20.6 -0.5 15 309-323 14-28 (48)
8 3kp1_E D-ornithine aminomutase 3.8 2.8E+02 0.0094 22.8 0.7 20 226-245 53-72 (121)
9 2hi2_A Fimbrial protein; type 3.4 3.2E+02 0.011 22.1 0.8 24 271-297 1-24 (158)
10 2hac_A T-cell surface glycopro 3.1 1.1E+03 0.037 15.0 3.3 22 71-92 10-32 (33)
No 1
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.03 E-value=7.3e-12 Score=82.47 Aligned_cols=33 Identities=45% Similarity=0.845 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhCCCCCCCCcccccccccchhHH
Q psy17802 238 VQFFERLKLFLMPTKHHSQAAYVRRVATSKMHL 270 (332)
Q Consensus 238 nqi~~Ri~ll~~~~k~~p~~~~lr~Vp~~~ihl 270 (332)
.|||||++++|||+|++||.+|+|+||+||||+
T Consensus 1 iQ~~~Ri~L~fmp~k~~P~~~Yvr~Vp~~r~Hl 33 (33)
T 1bh7_A 1 IQLFDRILLLFKPPKYHPDVPYVKRVKTWRMHL 33 (33)
T ss_dssp CCCTTTTCC-CCCSSCCCC-CCCCTTHHHHHTC
T ss_pred CcHHHHHHHHcCCcccCCCCceEEEcceeeeeC
Confidence 489999999999999999999999999999995
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=17.15 E-value=68 Score=31.35 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccchhHHHHHhhhhccccc
Q psy17802 69 LFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVP 122 (332)
Q Consensus 69 llSliL~lgT~~~a~~L~~f~~S~ff~~~vR~~lsDfg~~isVl~~t~~~~~~~ 122 (332)
.-.+.+++.|+.+...+.++. |++++-+++.+++++-+.++++.+
T Consensus 156 ~~~~~la~~tl~iii~~~~~~---------kg~~~~~aiLigivvg~~~a~~~G 200 (429)
T 3qe7_A 156 SKTIIISITTLAVTVLGSVLF---------RGFLAIIPILIGVLVGYALSFAMG 200 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---------STTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------cccchhhHHHHHHHHHHHHHHHhc
Confidence 355677777777777776543 334556788999988888876655
No 3
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=8.88 E-value=1.3e+02 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHHH
Q psy17802 271 FTIIQVLCLIVLWIVKSSSISLAFPFFL 298 (332)
Q Consensus 271 FT~iQ~~~l~~l~~i~~t~aai~FPv~I 298 (332)
||+++++..+++.+| .++++.|-+.
T Consensus 1 FTLiEllvviaIigi---Laaia~p~~~ 25 (151)
T 3sok_A 1 FTLIELMIVVAIIGI---LAAFAIPAYN 25 (151)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 789999888887776 3456666543
No 4
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=8.71 E-value=1.4e+02 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHH
Q psy17802 271 FTIIQVLCLIVLWIVKSSSISLAFPFF 297 (332)
Q Consensus 271 FT~iQ~~~l~~l~~i~~t~aai~FPv~ 297 (332)
||++|++..+++.+| .++++.|-+
T Consensus 1 FTLiEllivi~Ii~i---l~~ia~p~~ 24 (144)
T 1oqw_A 1 FTLIELMIVVAIIGI---LAAIAIPQY 24 (144)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHH
Confidence 789998888777776 345566644
No 5
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=6.69 E-value=2.5e+02 Score=24.51 Aligned_cols=34 Identities=32% Similarity=0.744 Sum_probs=22.3
Q ss_pred HHHHHHHHHH---hhh---hhcCccchhhhhhhhhhhhcc
Q psy17802 200 IVATLVGISV---LLS---PLLRLVPMAVLFGVFLYMGIS 233 (332)
Q Consensus 200 ~~~lLigls~---~l~---PvL~~IP~aVL~GlFlyMG~~ 233 (332)
..++|+|+++ ++. ..|--.|++...|+.+|..-.
T Consensus 120 ~vaIL~GL~~TL~lLa~~~~aLPALPiSI~lG~~fyf~t~ 159 (176)
T 2kr6_A 120 FVAILIGLCLTLLLLAIFKKALPALPISITFGLVFYFATD 159 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCSSSSSCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcHHHHHHHHHHHHHH
Confidence 3456666552 122 236668999999999998644
No 6
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=6.36 E-value=2.3e+02 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHhhhcchhhhhhHHHHHH---HHHHHh
Q psy17802 280 IVLWIVKSSSISLAFPFFLIL---MLPVRA 306 (332)
Q Consensus 280 ~~l~~i~~t~aai~FPv~Ii~---LVPiR~ 306 (332)
-.+|+-.-+..|+++|++|++ ++|+-.
T Consensus 15 W~LFgAGGm~sAl~~PvliLl~GillPlG~ 44 (119)
T 1kf6_D 15 WGLFGAGGMWSAIIAPVMILLVGILLPLGL 44 (119)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTGGGTC
T ss_pred heeeccchHHHHHHHHHHHHHHHHHhcccC
Confidence 355666777889999997776 555543
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=5.17 E-value=1.1e+02 Score=20.55 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.0
Q ss_pred cCCCChhhhhhhcCC
Q psy17802 309 SHIFSPSELRAVLLN 323 (332)
Q Consensus 309 Pr~F~~~eL~~LD~~ 323 (332)
..-|+++||.+|+++
T Consensus 14 kegfspeelaalese 28 (48)
T 1g6u_A 14 KEGFSPEELAALESE 28 (48)
T ss_dssp HTTCSHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH
Confidence 446999999998765
No 8
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=3.83 E-value=2.8e+02 Score=22.82 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.5
Q ss_pred hhhhhhccccCchhHHHHHH
Q psy17802 226 VFLYMGISSIDGVQFFERLK 245 (332)
Q Consensus 226 lFlyMG~~sL~Gnqi~~Ri~ 245 (332)
|.+.||++|++-+.++++++
T Consensus 53 Vlr~mGidgvda~~iVd~~~ 72 (121)
T 3kp1_E 53 VLLRMGFSSLEAKAIVDKTM 72 (121)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCccchHHHHHHHH
Confidence 36799999999999999886
No 9
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=3.40 E-value=3.2e+02 Score=22.08 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHH
Q psy17802 271 FTIIQVLCLIVLWIVKSSSISLAFPFF 297 (332)
Q Consensus 271 FT~iQ~~~l~~l~~i~~t~aai~FPv~ 297 (332)
||+++++..+++.+|= ++++.|.+
T Consensus 1 fTLiEl~vvi~ii~il---~~~~~p~~ 24 (158)
T 2hi2_A 1 XTLIELMIVIAIVGIL---AAVALPAY 24 (158)
T ss_dssp CCHHHHHHHHHHHHHH---HHHHTTTH
T ss_pred CcHHHHHHHHHHHHHH---HHHHHHHH
Confidence 7899988887777763 34555543
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=3.07 E-value=1.1e+03 Score=14.99 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-hccCCC
Q psy17802 71 CTVLALGTFLIALYLR-HFRNSK 92 (332)
Q Consensus 71 SliL~lgT~~~a~~L~-~f~~S~ 92 (332)
.+++.-|....++++| +|.+++
T Consensus 10 giL~iYgii~T~Ly~R~K~~~~~ 32 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKFSRSA 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Done!