Query psy17802
Match_columns 332
No_of_seqs 128 out of 479
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:28:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 24.4 15 0.0011 26.9 1.9 25 271-298 1-25 (158)
2 d3cx5d2 f.23.11.1 (D:261-307) 5.2 1.1E+02 0.0077 19.6 1.0 29 68-96 10-38 (47)
3 d1q90g_ f.23.26.1 (G:) PetG su 4.6 87 0.0063 18.0 0.2 14 214-228 10-23 (30)
4 d2pnga1 a.28.1.1 (A:1-76) Type 4.4 1.2E+02 0.0084 20.3 0.8 22 227-248 31-52 (76)
5 d1h41a2 d.92.2.2 (A:5-151) alp 4.0 1.3E+02 0.0097 22.7 1.0 18 214-231 112-129 (147)
6 d2gdwa1 a.28.1.2 (A:8-83) Pept 3.8 1.1E+02 0.0077 20.5 0.2 22 226-247 30-51 (76)
7 d1kf6d_ f.21.2.2 (D:) Fumarate 3.6 2.5E+02 0.018 21.0 2.2 21 281-301 16-36 (119)
8 d1lvaa3 a.4.5.35 (A:511-574) C 3.4 1.6E+02 0.011 19.2 0.7 29 84-112 12-40 (64)
9 d1qpma_ a.6.1.7 (A:) mu transp 3.3 1.7E+02 0.012 19.9 0.9 13 311-323 4-16 (69)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 3.2 4.4E+02 0.032 15.3 2.6 25 262-286 1-25 (34)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=24.37 E-value=15 Score=26.87 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhHHHH
Q psy17802 271 FTIIQVLCLIVLWIVKSSSISLAFPFFL 298 (332)
Q Consensus 271 FT~iQ~~~l~~l~~i~~t~aai~FPv~I 298 (332)
||+||++..+++.+| .+++++|-+.
T Consensus 1 FTLIELlVViaIIgI---Laaia~P~~~ 25 (158)
T d2pila_ 1 FTLIELMIVIAIVGI---LAAVALPAYQ 25 (158)
T ss_dssp CCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH---HHHHHHHHHH
Confidence 899999988888877 4577777554
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.22 E-value=1.1e+02 Score=19.57 Aligned_cols=29 Identities=14% Similarity=0.415 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCch
Q psy17802 68 ALFCTVLALGTFLIALYLRHFRNSKFLGR 96 (332)
Q Consensus 68 allSliL~lgT~~~a~~L~~f~~S~ff~~ 96 (332)
++-.+++.-..+.++++.+.++.|.+=+|
T Consensus 10 g~K~~~i~s~l~~~~~y~KR~kWs~lKsR 38 (47)
T d3cx5d2 10 GLKTVIILSSLYLLSIWVKKFKWAGIKTR 38 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 55566666667788889999987765433
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.63 E-value=87 Score=18.04 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=7.9
Q ss_pred hcCccchhhhhhhhh
Q psy17802 214 LLRLVPMAVLFGVFL 228 (332)
Q Consensus 214 vL~~IP~aVL~GlFl 228 (332)
+|+.||. .++|+|.
T Consensus 10 vlGlipi-Tl~Glfv 23 (30)
T d1q90g_ 10 VLGLVPV-TIAGLFV 23 (30)
T ss_dssp HHHHHHH-HHHHHHH
T ss_pred HHhhHHH-HHHHHHH
Confidence 3455554 3567775
No 4
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.41 E-value=1.2e+02 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred hhhhhccccCchhHHHHHHHhh
Q psy17802 227 FLYMGISSIDGVQFFERLKLFL 248 (332)
Q Consensus 227 FlyMG~~sL~Gnqi~~Ri~ll~ 248 (332)
|+=+|..||...++..|+.--|
T Consensus 31 f~~lG~DSl~a~el~~~i~~~~ 52 (76)
T d2pnga1 31 LADLGLDSLMGVEVRQILEREH 52 (76)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHh
Confidence 7789999999999999997554
No 5
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=4.02 E-value=1.3e+02 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.8
Q ss_pred hcCccchhhhhhhhhhhh
Q psy17802 214 LLRLVPMAVLFGVFLYMG 231 (332)
Q Consensus 214 vL~~IP~aVL~GlFlyMG 231 (332)
+.+.=+.++|||+|-++-
T Consensus 112 IaG~~~rG~LYG~f~lLr 129 (147)
T d1h41a2 112 VAANSDVGVLYGSFHLLR 129 (147)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEecCCcchHhHHHHHHH
Confidence 346789999999998874
No 6
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=3.81 E-value=1.1e+02 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.1
Q ss_pred hhhhhhccccCchhHHHHHHHh
Q psy17802 226 VFLYMGISSIDGVQFFERLKLF 247 (332)
Q Consensus 226 lFlyMG~~sL~Gnqi~~Ri~ll 247 (332)
=|+=+|.+||..-++..|+.--
T Consensus 30 ~f~~lG~dSl~a~~l~~~i~~~ 51 (76)
T d2gdwa1 30 NFFQIGGHSLKAMAVAAQVHRE 51 (76)
T ss_dssp TSSTTTCTTHHHHHHHHHHHHT
T ss_pred CHHHcCCChHHHHHHHHHHHHH
Confidence 4779999999999999999754
No 7
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=2.5e+02 Score=21.04 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=15.7
Q ss_pred HHHhhhcchhhhhhHHHHHHH
Q psy17802 281 VLWIVKSSSISLAFPFFLILM 301 (332)
Q Consensus 281 ~l~~i~~t~aai~FPv~Ii~L 301 (332)
.+|+-.-+..|+++|++|+++
T Consensus 16 gLFgAGGm~~A~~~Pvlill~ 36 (119)
T d1kf6d_ 16 GLFGAGGMWSAIIAPVMILLV 36 (119)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred eeecCCchhHHHHHHHHHHHH
Confidence 456666677899999887764
No 8
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=3.36 E-value=1.6e+02 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.5
Q ss_pred HHHhccCCCCCchhhhhhhhccchhHHHH
Q psy17802 84 YLRHFRNSKFLGRSARRALGDFGVPIAII 112 (332)
Q Consensus 84 ~L~~f~~S~ff~~~vR~~lsDfg~~isVl 112 (332)
....|+.+.|=+.++|++..+.+..-.-+
T Consensus 12 I~~~~~~~g~~PP~vrdl~~~l~~~e~~~ 40 (64)
T d1lvaa3 12 LEDKYRVSRWQPPSFKEVAGSFNLDPSEL 40 (64)
T ss_dssp HHHHHHHHTTSCCBHHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHhCCCHHHH
Confidence 34567888899999999999999866654
No 9
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=3.34 E-value=1.7e+02 Score=19.86 Aligned_cols=13 Identities=31% Similarity=0.105 Sum_probs=10.9
Q ss_pred CCChhhhhhhcCC
Q psy17802 311 IFSPSELRAVLLN 323 (332)
Q Consensus 311 ~F~~~eL~~LD~~ 323 (332)
||+.+||.-|++-
T Consensus 4 W~tA~ELagLpgl 16 (69)
T d1qpma_ 4 WCSPQEIMAADGM 16 (69)
T ss_dssp CBCHHHHHTSTTS
T ss_pred eecHHHHhcCCCC
Confidence 8999999888763
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.17 E-value=4.4e+02 Score=15.30 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhh
Q psy17802 262 RVATSKMHLFTIIQVLCLIVLWIVK 286 (332)
Q Consensus 262 ~Vp~~~ihlFT~iQ~~~l~~l~~i~ 286 (332)
|+|.|-+-.-..+-++.+.-+|.-.
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeeeee
Confidence 5677777777777777766666443
Done!