RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17802
(332 letters)
>gnl|CDD|233143 TIGR00834, ae, anion exchange protein. The Anion Exchanger (AE)
Family (TC 2.A.31)Characterized protein members of the
AE family are found only in animals.They preferentially
catalyze anion exchange (antiport) reactions, typically
acting as HCO3-:Cl- antiporters, but also transporting a
range of other inorganic and organic anions.
Additionally, renal Na+:HCO3- cotransporters have been
found to be members of the AE family. They catalyze the
reabsorption of HCO3- in the renal proximal tubule
[Transport and binding proteins, Anions].
Length = 900
Score = 201 bits (513), Expect = 3e-58
Identities = 81/140 (57%), Positives = 108/140 (77%), Gaps = 1/140 (0%)
Query: 181 APGEKPHIIEVKEQRVSALIVATLVGISVLLSPLLRLVPMAVLFGVFLYMGISSIDGVQF 240
APGEK I EV+EQRV+ L+VA LVG+S+L+ P+L+ +P+AVLFG+FLYMG++S+ G+Q
Sbjct: 736 APGEKAQIQEVREQRVTGLLVAVLVGLSILMEPILKRIPLAVLFGIFLYMGVTSLSGIQL 795
Query: 241 FERLKLFLMPTKHHSQAAYVRRVATSKMHLFTIIQVLCLIVLWIVKSSSISLAFPFFLIL 300
F+RL L LMP K+H YVRRV T +MHLFT IQ+LCL +LW+VKS+ SLAFPF LIL
Sbjct: 796 FDRLLLLLMPPKYHPDVPYVRRVKTWRMHLFTAIQILCLALLWVVKSTPASLAFPFVLIL 855
Query: 301 MLPVR-AQLSHIFSPSELRA 319
+P+R L +F+ EL+
Sbjct: 856 TVPLRRLLLPRLFTERELKC 875
Score = 107 bits (268), Expect = 2e-25
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 37 SESNFTNQMATISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLRHFRNSKFLGR 96
+ + + L TL QPNTAL VL LGTF +A++LR F+NS++
Sbjct: 530 QGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPG 589
Query: 97 SARRALGDFGVPIAIIVMVSLDYVV-PTYTEKLKVPEGLSPSNP 139
ARR +GDFGVPI+I++MV +D + TYT+KL VP GL +NP
Sbjct: 590 KARRLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLKVTNP 633
>gnl|CDD|216212 pfam00955, HCO3_cotransp, HCO3- transporter family. This family
contains Band 3 anion exchange proteins that exchange
CL-/HCO3-. This family also includes cotransporters of
Na+/HCO3-.
Length = 501
Score = 165 bits (419), Expect = 6e-47
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 178 RTHAPGEKPHIIEVKEQRVSALIVATLVGISVLLSPLLRLVPMAVLFGVFLYMGISSIDG 237
+ APGEKP I+ V+EQRV+ L+V LVG+SVL++P+L+ +PM VLFGVFLYMG++S+ G
Sbjct: 405 KCSAPGEKPQILGVREQRVTGLVVFLLVGLSVLMAPILKFIPMPVLFGVFLYMGVTSLSG 464
Query: 238 VQFFERLKLFLMPTKHHSQAAYVRRVATSKMHLFTII 274
+Q F+RL L LMP KH YVR V T +MHLFT+I
Sbjct: 465 IQLFDRLLLLLMPAKHQPDVIYVRHVPTWRMHLFTLI 501
Score = 127 bits (322), Expect = 4e-33
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 19 SPVSSALLAPQRDLNFSDSESNFTNQMATISPILLETLPLPTKE-----NQPNTALFCTV 73
S + P N +E ++TN + L + T QPNTAL +
Sbjct: 184 ITNYSCVCVPPITPNNHSTEIDWTN-LTKSECENYGGLLIGTSCGPHPPPQPNTALLSLI 242
Query: 74 LALGTFLIALYLRHFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVPTYTEKLKVPEG 133
L GTF IA +L+ F+NS+F RR +GDFGVPIAI++MV +DY++ YT KL VP G
Sbjct: 243 LMFGTFFIAYFLKKFKNSRFFPGKVRRVIGDFGVPIAILIMVLVDYLIGVYTPKLSVPSG 302
Query: 134 LSPSNP 139
P+NP
Sbjct: 303 FKPTNP 308
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 32.0 bits (73), Expect = 0.50
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 197 SALIVATLVGISVLLSPLLRLVPMAVLFGVFLYMGISSIDGVQFFERLKLFLMPTKHHSQ 256
S +A L G++ LL +L + AVL F Y+ +D ++ K S
Sbjct: 23 SIYFIAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLD--LILVKILGINFKLKRSSF 80
Query: 257 AAYVRRVATSKMHLFTIIQVLCLIVLWIVKSSSISLAFPFFLILMLPVRAQLSHIFSPSE 316
A+V V S T + +L +++ S+ LA L + PS
Sbjct: 81 LAFVSLVIWS-----TFLVLLLVLLAIRPVDVSLILAVALVLSFRFLIVLVSYKNSVPSS 135
Query: 317 L 317
+
Sbjct: 136 V 136
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 31.9 bits (73), Expect = 0.51
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 195 RVSALIVATLVGISVL-LSPLLRLVPMAVLFGVFLYMGISSIDGVQFFERLK 245
R+S +I A L+ + +L L+PL+ +P+A L V + +G +D + L
Sbjct: 322 RLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLD-WSLLKPLL 372
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 31.5 bits (72), Expect = 0.55
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 188 IIEVKEQRVSALIVATLVGISVLLSPLLRLVPMAVLFGVFLYMGISSIDGVQFFERLKLF 247
I+ KEQ +S L V S +LS L + + + FL G+ + FE L
Sbjct: 261 ILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL--GV----YLGLFEGLADL 314
Query: 248 LMPTKHHSQAAYVRRVATSKMHLFTIIQVLCLIVLWIVKSSSISLAFPFFLILMLPV 304
+ R+ L +I L + + ++P
Sbjct: 315 FKKSNSKP----GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPA 367
>gnl|CDD|215437 PLN02816, PLN02816, mannosyltransferase.
Length = 546
Score = 31.2 bits (70), Expect = 0.87
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 166 PISWYYGQGSIER--THAPGEKPHIIEVKEQRVSALIVATLVGISVLLSPLLRLV----P 219
P WY+ QG + T P II+ K Q++SALI+ L S+L R V P
Sbjct: 289 PWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFVLPVLP 348
Query: 220 MAVLFGVFLY 229
+A++F + +
Sbjct: 349 IALIFSGYAF 358
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 30.7 bits (70), Expect = 0.99
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 196 VSALIVATLVGI---SVLLSP-LLRLVPMAVLFGVFLYMGISSIDGVQ---FFERLKLFL 248
AL V + GI L P L + + F +F+ M + D ++ +F++ K L
Sbjct: 343 FGALFVTVIAGIPLYFTLFDPHLSTEIYFSGQFMMFVGMSFNIADEIRALLYFDKYKPLL 402
>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of
Site-2 protease (S2P), zinc metalloproteases (MEROPS
family M50) which cleave transmembrane domains of
substrate proteins, regulating intramembrane proteolysis
(RIP) of diverse signal transduction mechanisms. Members
of the S2P/M50 family of RIP proteases use proteolytic
activity within the membrane to transfer information
across membranes to integrate gene expression with
physiologic stresses occurring in another cellular
compartment. In eukaryotic cells they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum stress responses. In prokaryotes
they regulate such processes as sporulation, cell
division, stress response, and cell differentiation.
This group appears to be limited to Archaeal S2P/M50s
homologs with additional putative N-terminal
transmembrane spanning regions, relative to the core
protein, and either one or two PDZ domains present.
Length = 263
Score = 30.7 bits (70), Expect = 1.00
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 73 VLALGTFLIALYLRHFRNSKFLGRSAR-----RALGDFGVPIAIIVMVSLDYVV 121
+ G FL+ LR + F+ + AR RA G+ G+PIA + M+ + ++
Sbjct: 27 ISTYGPFLM---LRTKKGRGFIDKLARPKRFWRAFGNIGIPIAFVGMIFMLLLI 77
>gnl|CDD|147559 pfam05434, Tmemb_9, TMEM9. This family contains several eukaryotic
transmembrane proteins which are homologous to human
transmembrane protein 9. The TMEM9 gene encodes a 183
amino-acid protein that contains an N-terminal signal
peptide, a single transmembrane region, three potential
N-glycosylation sites and three conserved cys-rich
domains in the N-terminus, but no known functional
domains. The protein is highly conserved between species
from Caenorhabditis elegans to man and belongs to a
novel family of transmembrane proteins. The exact
function of TMEM9 is unknown although it has been found
to be widely expressed and localised to the late
endosomes and lysosomes. Members of this family contain
pfam03128 repeats in their N-terminal region.
Length = 149
Score = 29.9 bits (67), Expect = 1.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 249 MPTKHHSQAAYVRRVATS-KMHLFTIIQVLCLIVLWIVKSSSISLAFPFFLILMLPV 304
MP AY R + T I+V +I L I+ + L + FL+L+ P+
Sbjct: 28 MPVPGKDVEAYCLRCECKYEERSTTTIKVTIIIYLSII---GLLLLYMLFLMLLDPL 81
>gnl|CDD|148652 pfam07166, DUF1398, Protein of unknown function (DUF1398). This
family consists of several hypothetical Enterobacterial
proteins of around 130 residues in length. Members of
this family seem to be found exclusively in Escherichia
coli and Salmonella species. The function of this family
is unknown.
Length = 125
Score = 28.2 bits (63), Expect = 2.8
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 239 QFFERLK------LFLMPTKHHSQAAYVRRVATSKMHLFT 272
FE+++ F K H+ + Y+ +AT +H+
Sbjct: 7 HIFEQVRKDLNYQWFYSELKRHNVSHYIYYLATGNIHIVL 46
>gnl|CDD|217169 pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase.
This family of enzymes catalyzes the transfer of an acyl
group from acyl-ACP to glycerol-3-phosphate to form
lysophosphatidic acid.
Length = 178
Score = 28.6 bits (65), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 201 VATLVGISVLLSPLLRLVPMAVLFGVFLYMGISSI 235
VAT +G+ + LSPL+ L+ +AV V L S+
Sbjct: 99 VATTLGVLLALSPLVALIALAVWLLVLLITRYVSL 133
>gnl|CDD|114140 pfam05399, EVI2A, Ectropic viral integration site 2A protein
(EVI2A). This family contains several mammalian
ectropic viral integration site 2A (EVI2A) proteins. The
function of this protein is unknown although it is
thought to be a membrane protein and may function as an
oncogene in retrovirus induced myeloid tumours.
Length = 227
Score = 28.9 bits (64), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 69 LFCTVLALGTFLIALYLRHFRNSKFLGRSARRALGDF 105
L CT L L T ++A + + SK +G+ R+ GDF
Sbjct: 142 LICTFLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDF 178
>gnl|CDD|233132 TIGR00800, ncs1, NCS1 nucleoside transporter family. The
Nucleobase:Cation Symporter-1 (NCS1) Family (TC 2.A.39)
The NCS1 family consists of bacterial and yeast
transporters for nucleobases including purines and
pyrimidines. Members of this family possess twelve
putative transmembrane a-helical spanners (TMSs). At
least some of them have been shown to function in uptake
by substrate:H+ symport mechanism [Transport and binding
proteins, Nucleosides, purines and pyrimidines].
Length = 442
Score = 28.5 bits (64), Expect = 5.1
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 40 NFTNQMATISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLRHFRNS--KFLGRS 97
+ + S L LP +L C ++AL LY + + FL
Sbjct: 309 STNISANSYSAGLDIAALLPKYIKIKRGSLICAIIALLICPWNLY--NSSSKFTTFLS-- 364
Query: 98 ARRALGDFGVPIAIIVM 114
++G F PIA +++
Sbjct: 365 ---SIGGFLSPIAGVMI 378
>gnl|CDD|203376 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1290
Score = 28.2 bits (63), Expect = 8.3
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 31 DLNFSDSESNFTNQMATISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLRHFRN 90
L + D E T ++ ++ +LL P+ + + +G FL + +
Sbjct: 76 PLAYDDWEEFITERLRALAYVLLRIYPI-SAYAGRHVNPLVANALVGAFLSNRPIDDLLD 134
Query: 91 SKFLGRSARRALGDFGVPIAIIVMVSLDYVVPTYTEKLKVPEGLSPS 137
FL R+ + G+ ++ V D + K EG PS
Sbjct: 135 LLFLNRTPIGDILGTGITLSQDFQVHRDVLETPAGRKYLQLEGYDPS 181
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 27.8 bits (62), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 198 ALIVATLVGISVLLSPLLRLVPMAVLFGVFLYMGIS 233
AL VA L+ + + P L +P A+L GV ++ +
Sbjct: 287 ALSVAALLMFVLAIVPGLPFLPFALLGGVMAFVAYT 322
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.400
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,786,304
Number of extensions: 1632497
Number of successful extensions: 2541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2524
Number of HSP's successfully gapped: 96
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)