RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17802
(332 letters)
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein;
NMR {Homo sapiens} SCOP: j.35.1.1
Length = 33
Score = 56.6 bits (137), Expect = 2e-11
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 238 VQFFERLKLFLMPTKHHSQAAYVRRVATSKMHL 270
+Q F+R+ L P K+H YV+RV T +MHL
Sbjct: 1 IQLFDRILLLFKPPKYHPDVPYVKRVKTWRMHL 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 3e-08
Identities = 57/342 (16%), Positives = 103/342 (30%), Gaps = 119/342 (34%)
Query: 20 PVSSALLAPQ-RDLNFSDSESNFTNQMA----TISPI-LLET-LPLPTKENQPNTA-LFC 71
P +S +A Q ++ F+ T A +P L+ L + +P+ F
Sbjct: 23 PTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 72 TVLALGTFLIALYLRHFRNSKFLGRS-----ARRALGDFGVPIAIIVMVSLDYVVPTYTE 126
VL L L F + +L + A + L + + ++ Y
Sbjct: 82 QVLNLC-------LTEF-ENCYLEGNDIHALAAKLLQENDTTLV-----KTKELIKNYIT 128
Query: 127 KLKVPEGLSPSNPACVATTTTIDHGTSLRPWTIAEKTLSPISWYY----GQGSIERTHAP 182
A + D ++ + + + + GQG+ +
Sbjct: 129 -------------ARIMAKRPFDKKSNSALFRAVGEGNAQL---VAIFGGQGNTDDY--- 169
Query: 183 GEKPHIIEVKEQR----VSALIVATLVG-ISVLLSPLLRLVPMA-VLFGVFLYMGISSID 236
+E R ++V L+ + LS L+R A +F ++
Sbjct: 170 --------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-------QGLN 214
Query: 237 GVQFFERLKLFLMPTKHHSQAAYVRRVATSKMHLFTIIQVLCLIVLWIVKSSSISLAFPF 296
+++ E P+ + Y L S IS P
Sbjct: 215 ILEWLEN------PSNTPDKD-Y-----------------LL--------SIPIS--CP- 239
Query: 297 FLILMLPVRAQLSHI--------FSPSELRAVLLNLTPCQTG 330
LI ++ QL+H F+P ELR+ L T G
Sbjct: 240 -LIGVI----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Score = 36.6 bits (84), Expect = 0.011
Identities = 81/457 (17%), Positives = 127/457 (27%), Gaps = 197/457 (43%)
Query: 3 LQEYCSPNLTASTMMRSPV----SSALL-------AP-------Q----------RDLNF 34
++ Y +TA M + P +SAL A Q RDL +
Sbjct: 123 IKNY----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-Y 177
Query: 35 SDSESNFTNQMATISPILLETLPLPTK------------------ENQPNTALFCTVLAL 76
+ + + L E + N P+ ++
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI- 236
Query: 77 GTF-LIALY-LRHFRNS-KFLGRS----ARRALGDFGVPIAIIVMV---------SLDYV 120
+ LI + L H+ + K LG + G G ++ V S
Sbjct: 237 -SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 121 VPTYTEKL---------KVPE-GLSPSNPACVATTTTIDHGTSLRPWTIAEKTLSP---I 167
V L P L PS ++++ E SP I
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPS-----ILEDSLENN---------EGVPSPMLSI 341
Query: 168 SWYYG------QGSIERT--HAPGEKPHIIEVKEQRVS------ALIVA----TLVGISV 209
S Q + +T H P K + +S L+V+ +L G
Sbjct: 342 S---NLTQEQVQDYVNKTNSHLPAGK-QV------EISLVNGAKNLVVSGPPQSLYG--- 388
Query: 210 LLSPLLRLVPMAVLFGVFLYMGISSIDGVQ----FFERLKL-----FLMPTK--HHSQAA 258
L+ LR S +D Q F ER KL FL P HS
Sbjct: 389 -LNLTLRKAKAP-----------SGLD--QSRIPFSER-KLKFSNRFL-PVASPFHSH-- 430
Query: 259 YVRRVATSKMHLFTIIQ-VLCLIVLWIVKSSSISLAFPFF-------------------- 297
+ A+ I + ++ V + K + P +
Sbjct: 431 LLVP-ASDL-----INKDLVKNNVSFNAK----DIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 298 -LILMLPV------RAQLSHI--FSPSELRAVLLNLT 325
I+ LPV + + +HI F P + L LT
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGA-SGLGVLT 516
Score = 31.6 bits (71), Expect = 0.45
Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 34/123 (27%)
Query: 151 GTSLRPWTIAEKTLSPISWYYGQGSIERT-HAP-GEKPHIIEVKEQRVSALIVAT--LVG 206
S RP T++ GS+E P +++EQ L T
Sbjct: 3 AYSTRPLTLS------------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 207 ISVLLSPLLRLVPMAVLFGVFLYMGISSID---GVQFFERLKL--------FLMPTKHHS 255
+P A L G FL S ++ QF + L L +L H+
Sbjct: 51 DDEPTTP-------AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 256 QAA 258
AA
Sbjct: 104 LAA 106
Score = 28.9 bits (64), Expect = 3.4
Identities = 45/247 (18%), Positives = 76/247 (30%), Gaps = 91/247 (36%)
Query: 27 APQRDLNFSDSESNFTNQMATISPIL---------LETL------PLPTKENQPNTALFC 71
P L S E + N SP+L ++ LP Q +L
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GKQVEISLVN 372
Query: 72 T----VLALGTFLIALYL--RHFRNSK-----------FLGRSARRALGD--FGVPIAI- 111
V++ G +LY R +K F S R+ F +P+A
Sbjct: 373 GAKNLVVS-G-PPQSLYGLNLTLRKAKAPSGLDQSRIPF---SERKLKFSNRF-LPVASP 426
Query: 112 ---------IVMVSLDYVVPTYT---EKLKVPEGLSPSNPACVATTTTIDHGTSLRPWT- 158
+++ D V + + +++P V T G+ LR +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP----------VYDTFD---GSDLRVLSG 473
Query: 159 -IAEK-----TLSPISWYYGQGSIERTHAPGEKPHIIEVKEQRVSALIVATLV------- 205
I+E+ P+ W E T HI++ S L L
Sbjct: 474 SISERIVDCIIRLPVKW-------ETTTQFKA-THILDFGPGGASGL--GVLTHRNKDGT 523
Query: 206 GISVLLS 212
G+ V+++
Sbjct: 524 GVRVIVA 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 51/349 (14%), Positives = 113/349 (32%), Gaps = 109/349 (31%)
Query: 30 RDLNFSDSESNFTNQMAT---ISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLR 86
+ + D + + + + I I++ + LF T+L+
Sbjct: 31 DNFDCKDVQ-DMPKSILSKEEIDHIIMS----KDAVSGTLR-LFWTLLSKQE-------- 76
Query: 87 HFRNSKFLGRSARRALGDFGVPIAIIVMVSLDYVVPTYTEKLKVPEGLSPSNPACVATTT 146
++ + + ++ ++Y +K E PS T
Sbjct: 77 ---------EMVQKFVEE---------VLRINY--KFLMSPIKT-EQRQPSMM----TRM 111
Query: 147 TIDHGTSLRPWTIAEKTLSPISWYYGQGSIERTHAPGEKPH--IIE-VKEQRVSALIVAT 203
I+ L + + + + ++ R +P+ + + + E R + ++
Sbjct: 112 YIEQRDRL--YNDNQV--------FAKYNVSR-----LQPYLKLRQALLELRPAKNVL-- 154
Query: 204 LVGI-----SVLLSPLLR--LVPMAVLFGVF-LYMG-ISSIDGV-QFFERLKLFLMPTKH 253
+ G+ + + + V + F +F L + +S + V + ++L + P
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 254 -------------HSQAAYVRRVATSKMHLFTIIQVLCLIVLWIVKSSSISLAFPF---- 296
HS A +RR+ SK + CL+VL V+++ AF
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 297 -----------FLILMLPVRAQLSHI---FSPSELRAVLLNLTPCQTGK 331
FL L H +P E++++LL C+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.0
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 127 KLKVPEGLSPSNPACVATTTTID 149
KL + S PA +A T++
Sbjct: 30 KLYADD----SAPA-LAIKATME 47
Score = 28.8 bits (63), Expect = 1.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 19/46 (41%)
Query: 161 EK-TLSPISWYYGQGSIERTHAPGEKPHIIEVKEQRVSAL-IVATL 204
EK L + Q S+ + +A P AL I AT+
Sbjct: 18 EKQALKKL-----QASL-KLYADDSAP-----------ALAIKATM 46
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
protein complex, sodium,calcium EX membrane protein;
HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
PDB: 3v5s_A*
Length = 320
Score = 28.0 bits (63), Expect = 4.5
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 205 VGISVLLSPLL-------RLVPM---AVLFGVFLYMGISSIDGVQFFERLKLFL-----M 249
+G+S ++SP++ ++ + V G S IDGV ++L
Sbjct: 86 LGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKN 145
Query: 250 PTKHHSQAAYVRRVATSKMHLFTIIQVLCLIV--LWIVKSSS 289
+ + + + II ++ ++V V +
Sbjct: 146 GSAEIEENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAK 187
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge,
antitumor protein; 2.00A {Homo sapiens}
Length = 304
Score = 27.1 bits (59), Expect = 8.4
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 198 ALIVATLV-GISVLLSPLLRLVPMAVLFGVFLYMGISSIDGVQFFERLKLFLMPTKHHSQ 256
I A + +S + L + + ++V +FF LK TK
Sbjct: 52 IFIAAVDLDEMSFTFTELQKNIEISV---------------HKFFNLLKEIDTSTK---V 93
Query: 257 AAYVRRVATSKMHLFTIIQVLCLIVLWI---------VKSSSISLAFPFFLILMLPVRAQ 307
+ R+ LF + L I + +L I L + +
Sbjct: 94 DNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSSISTEINSALVLKVSWITFLLAKGE 153
Query: 308 LSHIFS 313
+ +
Sbjct: 154 VLQMED 159
>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger,
viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP:
e.35.1.1 PDB: 2cse_A
Length = 666
Score = 27.2 bits (59), Expect = 10.0
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 41 FTNQMATISPILLETLPLPTKENQPNTALFCTVLALGTFLIALYLRHFRNSKFLGRSARR 100
++ + I+ + E PN+ LA+ +R F L + A R
Sbjct: 497 MIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASR 556
Query: 101 ALGDF-GVPIAII 112
A+ F G P II
Sbjct: 557 AMQAFIGDPSTII 569
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.400
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,825,824
Number of extensions: 282125
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 16
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)