RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17802
         (332 letters)



>d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism
           protein CcmL {Synechocystis sp. (strain PCC 6803)
           [TaxId: 1148]}
          Length = 96

 Score = 24.6 bits (54), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 95  GRSARRALGDFGVPI-AIIV 113
           G +AR+  G+   P+ A++V
Sbjct: 60  GSAARKERGNGDRPLDAMVV 79


>d2hd3a1 b.40.15.1 (A:1-95) Ethanolamine utilization protein EutN
           {Escherichia coli [TaxId: 562]}
          Length = 95

 Score = 24.6 bits (54), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 95  GRSARRALGDFGVPIAIIVMVSLDYV 120
           G SAR+A      P+ + V+  +D V
Sbjct: 60  GSSARQAHKSETSPVDLCVIGIVDEV 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,140,884
Number of extensions: 49840
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)