BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17806
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 110/113 (97%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR E DAEKA NDLNNR
Sbjct: 76 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNR 135
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WFGGRPVY+ELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY
Sbjct: 136 WFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%), Gaps = 2/125 (1%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR--RKR 118
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR LRR LY R R R
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGRGPRHR 193
Query: 119 SSRRS 123
S RS
Sbjct: 194 SPPRS 198
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 111/125 (88%), Gaps = 2/125 (1%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR--RKR 118
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR LRR LY R R R
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGRGPRHR 193
Query: 119 SSRRS 123
S RS
Sbjct: 194 SPPRS 198
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR+LRR LY
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 186
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 103/113 (91%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+QEHYD+FFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREED E+AV +L+NR
Sbjct: 74 VQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNR 133
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
WF G+ V+ ELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PIS+ L+R LY
Sbjct: 134 WFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLY 186
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+ E +D F+ED+F E KYGE+E++ VCDN+GDHLVGNVY++F+ EE A+ A++DLN+R
Sbjct: 69 LAEQFDAFYEDMFCEF-SKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSR 127
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL-KPISRELRRYLYSRRK 117
W+ RPVYAELSPVTDFREACCRQ+E EC R G CNFMH KP + LR + ++RK
Sbjct: 128 WYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRK 185
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEH+++F+ED++ E K+GE+E +NVCDNL DH++GNVY++FR EE A A N L R
Sbjct: 74 MQEHFEDFYEDIYEEL-SKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGR 132
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
++ GRP+ E SPVTDFREA CRQ+E C R G+CNFMH+K I RELRR LY
Sbjct: 133 FYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLY 185
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+Q +++F+ED+F E KYGEIE ++VCDN DH++GNVY++FR E+ A +A+ L R
Sbjct: 74 IQADFEDFYEDIFEELS-KYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGR 132
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRKRSS 120
++ GRP+ E SPV+DFREA CRQYE C R G+CNFMH+K I R+LR+ L+ RS
Sbjct: 133 YYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFGHLHRSR 192
Query: 121 RRSSRSRSR 129
R S RSR
Sbjct: 193 RSHSHGRSR 201
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+QEH+++FFED+F E K+GEIE +N+CDNL DH++GNVY++F+ E+ A A+ L R
Sbjct: 74 IQEHFEDFFEDLFEEL-GKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGR 132
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113
++ GRP+ A+ SPVTDFREA CRQYE C R G+CNFMH+K +SRELRR L+
Sbjct: 133 FYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLF 185
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+Q+H+++F+ED+F E +K+GE+E +NVCDNL DH++GNVY+ F+ E+ A A+ L R
Sbjct: 74 IQDHFEDFYEDIFEEL-NKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGR 132
Query: 61 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYS 114
++ GRP+ A+ SPVTDFREA CRQYE C R G+CNFMH+K ISRELRR L+
Sbjct: 133 FYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
+ + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N RW+
Sbjct: 239 QQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWY 297
Query: 63 GGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 101
GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 298 AGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
+ + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N RW+
Sbjct: 234 QQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWY 292
Query: 63 GGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 101
GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 293 AGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
+ + +F+ DV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N RW+
Sbjct: 225 QQFLDFYHDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWY 283
Query: 63 GGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 101
GR + E PVT ++ A C +EM +C + CNF+H+
Sbjct: 284 AGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
+ + +F+ DV E + G++ + V NL HL GNVY++++ EED + A + N RW+
Sbjct: 238 QQFLDFYYDVLPEFKS-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWY 296
Query: 63 GGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 101
GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 297 AGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 64
Y+ F+EDV E KYGE+ VC N HL GNVY+ +R E A A +N R+F G
Sbjct: 304 YEEFYEDVHTEFL-KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAG 362
Query: 65 RPVYAELSPVTDFREACCRQY---EMGECTRSGFCNFMH 100
+ V E ++ ++ A C +Y + C+R CNF+H
Sbjct: 363 KQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
+++ Y+ F+EDV E K+GE+ VC N HL GNVY+ ++ + A A + +N R
Sbjct: 223 IEQSYEEFYEDVHTEFL-KFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 281
Query: 61 WFGGRPVYAELSPVTDFREACCRQY---EMGECTRSGFCNFMH 100
+F G+ + E VT ++ A C +Y C+R CNF+H
Sbjct: 282 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+DV EC++KYG++ + V N +G +++KF + AEKA+ L+ RWFGGR + A
Sbjct: 530 QDVKEECDEKYGKVVHIAVVPNE----LGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 585
Query: 70 ELSPVTDF 77
+ P TD+
Sbjct: 586 SILPETDY 593
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 70 EL-SPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRKRSSRRSSRSRS 128
+ TD++ E G+ F++ +R LRR S +S R+ SR+
Sbjct: 345 QAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRR---SDSVSASERAGPSRA 399
Query: 129 R 129
R
Sbjct: 400 R 400
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 290 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITA 345
Query: 70 EL-SPVTDFR 78
+ TD++
Sbjct: 346 QAWDGTTDYQ 355
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 70 EL-SPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRKRSSRRSSRSRS 128
+ TD++ E G+ F++ +R LRR S +S R+ SR+
Sbjct: 345 QAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRR---SDSVSASERAGPSRA 399
Query: 129 R 129
R
Sbjct: 400 R 400
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 15 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 333 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 391
Query: 73 PVTDFR 78
+ FR
Sbjct: 392 NLDKFR 397
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 15 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 387
Query: 73 PVTDFR 78
+ FR
Sbjct: 388 NLDKFR 393
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71
++K GE E+ + + ++++F + KA+ DLN RWF GR V AE+
Sbjct: 471 QEKQGEEEDAEI--------IVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEV 517
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 6 DNFFEDVFVECEDKYGEIEEMNVC-DNLGDH----LVGNVYIKFRREEDAEKAVNDLNNR 60
D+ +V EC KYG + + + + G+ ++ ++++F + KA+ LNNR
Sbjct: 434 DDLEGEVMEEC-GKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFSDAGEMNKAIQALNNR 492
Query: 61 WFGGRPVYAEL 71
WF GR V AEL
Sbjct: 493 WFAGRKVVAEL 503
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71
++K GE E+ + + ++++F + KA+ LN RWFGGR V AE+
Sbjct: 505 QEKQGEEEDAEI--------IVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71
++K GE E+ + + ++++F + KA+ LN RWFGGR V AE+
Sbjct: 505 QEKQGEEEDAEI--------IVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 6 DNFFEDVFVECEDKYGEIEEMNVCD----NLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 61
D ++V EC KYG + + + + N H ++++F R E+ KA+ DL+ R+
Sbjct: 298 DELEDEVGGEC-GKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRY 356
Query: 62 FGGRPVYA-----------ELSPV 74
FGGR V A EL+PV
Sbjct: 357 FGGRTVRATFYDEEKFSKNELAPV 380
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E + E G++ + VC D + +G Y+ F + ED EKA+ DLN GRP
Sbjct: 64 EALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRP 121
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQ 84
++ F E+A KA+ ++N R G+P+Y L+ D R + Q
Sbjct: 379 FVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQ 422
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
+F E+ F + + YG+I + + + G ++ F E A KAV++LN++ G+
Sbjct: 242 DFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQK 301
Query: 67 VYAELSPVTDFR-EACCRQYE 86
+Y + R E +QYE
Sbjct: 302 IYVGRAQKKRERLEELKKQYE 322
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71
++K GE E+ + + ++++F + KA+ LN RWF GR V AE+
Sbjct: 499 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 545
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71
++K GE E+ + + ++++F + KA+ LN RWF GR V AE+
Sbjct: 500 QEKQGEEEDAEI--------IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 546
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVC----DNLGDHLVGNVYIKFRREEDAEKAVNDLN 58
E Y++ ED+ +E KYG + ++ + L VG V++++ + A KA ++
Sbjct: 464 EEYEDIMEDMRLEA-GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMH 522
Query: 59 NRWFGGRPVYAELSPVTDFREA 80
R FGG PV A P F A
Sbjct: 523 GRKFGGNPVVAVFYPENKFSSA 544
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVC------DNLGDHLVGNVYIKFRREEDAEKAVND 56
+ Y + ED+ ECE K+G + +NV + + +G V++++ + + KA
Sbjct: 471 DDYQDILEDMRTECE-KFGAL--VNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQG 527
Query: 57 LNNRWFGGRPVYAELSPVTDFREA 80
LN R FGG V A P F E
Sbjct: 528 LNGRKFGGNQVVAVFYPENKFSEG 551
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+DV EC +K+G + + V N GNVY+K A AVN L+ RWF G+ + A
Sbjct: 442 DDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 497
Query: 70 ELSPVTDF 77
P+ +
Sbjct: 498 AYVPLPTY 505
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+DV EC +K+G + + V N GNVY+K A AVN L+ RWF G+ + A
Sbjct: 448 DDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 503
Query: 70 ELSPVTDF 77
P+ +
Sbjct: 504 AYVPLPTY 511
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E + E + G + + VC D + +G Y+ F ED EKA+++LN GRP
Sbjct: 93 EAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRP 150
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
F D+F ++GEI +++ + D G ++ + E A+KAV++LN++ + G+ +Y
Sbjct: 277 FSDLF----GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ + E+A KAV ++N R G+P+Y L+ + R +
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRS 447
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+DV EC +K+G + + V N GNVY+K A AVN L+ RWF G+ + A
Sbjct: 448 DDVIEEC-NKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 503
Query: 70 ELSPVTDF 77
P+ +
Sbjct: 504 AYVPLPTY 511
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ F +DA KAV ++N R G+P+Y L+ D R++
Sbjct: 429 FVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKS 468
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E + E + G + + VC D + +G Y+ + D EKA+ +LN GRP
Sbjct: 73 EAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRP 130
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
++ F E K+GE+ ++ + G ++ F E A +AV++LN + F G+ +Y
Sbjct: 254 DEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Query: 70 ELSPVTDFREACCRQ-YEMGECTRS 93
+ RE R+ YE ++
Sbjct: 314 GRAQKKHEREEELRKSYEAARLEKA 338
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 20 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79
YG I V G H G ++ F E+A KAV ++N R G +P+Y L+ + R+
Sbjct: 317 YGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Query: 80 A 80
A
Sbjct: 376 A 376
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 GEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
G I + VC ++ +G YI F++ DAE+A++ +N G+P+
Sbjct: 35 GPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPI 82
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
+D+F ++G++ + V + H ++ F + E+A+KAV +N + GR +Y
Sbjct: 207 LQDLF----SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 69 A 69
A
Sbjct: 263 A 263
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVC------DNLGDHLVGNVYIKFRREEDAEKAVND 56
E Y + ED+ EC K+G + +NV + VG V++++ + + KA
Sbjct: 489 EDYQDILEDMRTEC-GKFGSL--VNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQS 545
Query: 57 LNNRWFGGRPVYAELSPVTDFREA 80
LN R FGG V A P F E
Sbjct: 546 LNGRKFGGNQVVAVFYPENKFYEG 569
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQ 84
++ F E+A KA+ ++N R F G+P+Y L+ D R + Q
Sbjct: 380 FVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQ 423
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E E G++ + VC D + +G Y+ + + ED EKA+ +LN GRP
Sbjct: 65 EATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRP 122
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 7 NFFEDV----FVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
NF ED+ E K+G + V + G ++ F R EDA+KAV+++N +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 63 GGRPVY 68
G+ +Y
Sbjct: 257 NGKQIY 262
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 GEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
G I + VC D + +G Y+ F++ DAE+A++ +N G+PV
Sbjct: 35 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ F E+A KAV ++N R +P+Y L+ + R+A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E E G++ + VC D + +G Y+ + + ED EKA+ +LN GRP
Sbjct: 65 EATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQ 84
++ F E+A KA+ ++N R G+P+Y L+ D R + Q
Sbjct: 380 FVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQ 423
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
N+ E+ F + +G+I + + + G ++ F E A KAV +LN++ G+
Sbjct: 243 NYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQK 302
Query: 67 VYAELSPVTDFR-EACCRQYE 86
+Y + R E +QYE
Sbjct: 303 IYVGRAQKKRERLEELKKQYE 323
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 7 NFFEDV----FVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
NF ED+ E K+G + V + G ++ F R EDA+KAV+++N +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 63 GGRPVY 68
G+ +Y
Sbjct: 257 NGKQIY 262
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 GEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
G I + VC D + +G Y+ F++ DAE+A++ +N G+PV
Sbjct: 35 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ F E+A KAV ++N R +P+Y L+ + R+A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79
++ F +DA KAV ++N R G+P+Y L+ D R+
Sbjct: 438 FVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRK 476
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
E + E + G + + VC D + +G Y+ + D EKA+ +LN GRP
Sbjct: 78 EAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRP 135
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62
E D F D+F KYG++ ++ + G ++ F E A KAV +LN + F
Sbjct: 256 EATDEEFRDLFA----KYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEF 311
Query: 63 GGRPVYAELSPVTDFREACCRQ-YEMGECTRS 93
G+ +Y + RE R+ YE ++
Sbjct: 312 RGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343
>sp|Q6BW07|RRT5_DEBHA Regulator of rDNA transcription protein 5 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=RRT5 PE=3 SV=2
Length = 355
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81
+V + ++EED KA+++LN++ GR VY + + ++ E
Sbjct: 221 SVLVTLKKEEDLSKAISELNSKKLNGRAVYLKAAHLSKIEEVV 263
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL--------SPVTDFREACCRQYEMGE 89
G Y +F E A K V DLN F R ++ +L P+ R+ ++G+
Sbjct: 52 GIAYAEFSSVEQASKVVKDLNGALFKDRQIFVKLHVPFSPTGKPIFGRRKTSSGAEKLGD 111
Query: 90 CTRSGFCNFMHLKPISRELRRY 111
+ + KP+S + + +
Sbjct: 112 ASNKVNLSAKTDKPLSSDTKDF 133
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 65
D +D+F K+G + V + G ++ F R EDA+KAV+++N + G+
Sbjct: 204 DERLKDLF----GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 66 PVY 68
+Y
Sbjct: 260 QIY 262
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 GEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
G I + VC D + +G Y+ F++ DAE+A++ +N G+PV
Sbjct: 35 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ F E+A KAV ++N R +P+Y L+ + R+A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 65
D +D+F K+G + V + G ++ F R EDA+KAV+++N + G+
Sbjct: 204 DERLKDLF----GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 66 PVY 68
+Y
Sbjct: 260 QIY 262
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 GEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
G I + VC D + +G Y+ F++ DAE+A++ +N G+PV
Sbjct: 35 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++ F E+A KAV ++N R +P+Y L+ + R+A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,572,745
Number of Sequences: 539616
Number of extensions: 2014333
Number of successful extensions: 5994
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 5604
Number of HSP's gapped (non-prelim): 460
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)