Query psy17806
Match_columns 130
No_of_seqs 205 out of 1343
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202|consensus 100.0 1.7E-38 3.7E-43 246.9 5.2 129 1-129 74-202 (260)
2 TIGR01645 half-pint poly-U bin 99.7 5.4E-17 1.2E-21 140.6 9.4 76 4-80 528-608 (612)
3 smart00361 RRM_1 RNA recogniti 99.7 7E-16 1.5E-20 98.9 8.5 64 6-70 3-70 (70)
4 TIGR01622 SF-CC1 splicing fact 99.6 3.9E-16 8.5E-21 129.7 8.4 75 3-81 380-454 (457)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9.4E-16 2E-20 128.8 8.6 77 3-80 427-507 (509)
6 KOG0120|consensus 99.6 3.2E-15 6.9E-20 126.7 7.9 77 2-79 416-496 (500)
7 PF13893 RRM_5: RNA recognitio 99.6 2.3E-14 4.9E-19 87.7 8.2 56 12-72 1-56 (56)
8 KOG0147|consensus 99.5 8.4E-15 1.8E-19 124.0 6.9 71 6-81 464-534 (549)
9 KOG0148|consensus 99.5 1.4E-13 3.1E-18 108.9 7.7 103 9-115 76-187 (321)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5.6E-13 1.2E-17 107.0 9.4 69 6-75 280-349 (352)
11 KOG1548|consensus 99.4 4.6E-13 1E-17 108.6 7.7 70 5-78 286-356 (382)
12 PLN03134 glycine-rich RNA-bind 99.4 2.6E-12 5.7E-17 93.4 9.2 67 6-73 45-112 (144)
13 PF00076 RRM_1: RNA recognitio 99.4 6.8E-12 1.5E-16 78.1 8.5 60 8-68 11-70 (70)
14 KOG1996|consensus 99.4 1.6E-12 3.5E-17 104.0 6.7 75 5-80 296-372 (378)
15 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.5E-15 73.4 8.9 61 7-68 10-70 (70)
16 KOG4207|consensus 99.2 9.2E-12 2E-16 95.7 4.2 66 6-72 24-90 (256)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 5.7E-11 1.2E-15 95.4 9.1 67 6-73 14-81 (352)
18 smart00360 RRM RNA recognition 99.2 1.2E-10 2.6E-15 70.8 7.8 62 8-70 9-71 (71)
19 KOG0107|consensus 99.2 4.2E-11 9E-16 89.8 5.7 63 7-74 22-84 (195)
20 TIGR01628 PABP-1234 polyadenyl 99.2 1.2E-10 2.6E-15 99.6 8.7 68 8-76 298-365 (562)
21 smart00362 RRM_2 RNA recogniti 99.2 3.2E-10 7E-15 69.2 8.0 61 8-70 12-72 (72)
22 cd00590 RRM RRM (RNA recogniti 99.1 8.5E-10 1.8E-14 67.7 8.8 63 8-71 12-74 (74)
23 TIGR01659 sex-lethal sex-letha 99.1 1.6E-10 3.4E-15 94.8 6.8 68 5-73 117-185 (346)
24 KOG0113|consensus 99.1 2.8E-10 6.1E-15 91.2 7.1 68 4-72 110-178 (335)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 9.5E-10 2.1E-14 93.1 10.3 62 8-74 289-350 (481)
26 KOG0122|consensus 99.1 4.6E-10 1E-14 87.9 7.6 66 8-74 202-268 (270)
27 KOG0127|consensus 99.1 3.8E-10 8.2E-15 96.4 7.3 70 10-80 132-202 (678)
28 TIGR01659 sex-lethal sex-letha 99.0 1.1E-09 2.4E-14 89.8 9.0 68 7-75 205-275 (346)
29 KOG0125|consensus 99.0 5.7E-10 1.2E-14 90.4 6.4 63 10-74 111-173 (376)
30 KOG0124|consensus 99.0 7.1E-10 1.5E-14 91.4 6.7 75 5-80 461-540 (544)
31 TIGR01628 PABP-1234 polyadenyl 99.0 1.5E-09 3.4E-14 92.8 8.9 67 6-73 11-78 (562)
32 KOG0114|consensus 99.0 9.8E-10 2.1E-14 76.5 6.0 73 5-80 28-101 (124)
33 PLN03120 nucleic acid binding 99.0 1.3E-09 2.8E-14 86.3 7.2 66 5-74 14-79 (260)
34 TIGR01645 half-pint poly-U bin 99.0 8.3E-10 1.8E-14 96.2 6.7 67 5-72 117-184 (612)
35 TIGR01622 SF-CC1 splicing fact 99.0 3.1E-09 6.8E-14 88.4 9.0 65 8-73 199-264 (457)
36 COG5175 MOT2 Transcriptional r 98.9 2.3E-09 5E-14 87.6 6.7 100 15-120 139-245 (480)
37 KOG0148|consensus 98.9 4.5E-09 9.8E-14 83.5 7.2 60 9-74 178-237 (321)
38 TIGR01642 U2AF_lg U2 snRNP aux 98.9 7.1E-09 1.5E-13 87.2 8.8 66 7-73 307-373 (509)
39 COG0724 RNA-binding proteins ( 98.9 5.9E-09 1.3E-13 77.4 7.0 67 6-73 126-193 (306)
40 KOG0123|consensus 98.8 9E-09 2E-13 85.2 7.6 68 10-80 91-158 (369)
41 KOG0130|consensus 98.8 4.4E-09 9.5E-14 76.4 5.0 66 6-72 83-149 (170)
42 KOG0110|consensus 98.8 2.3E-08 5.1E-13 87.3 10.0 105 4-115 524-636 (725)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 3.2E-08 6.9E-13 83.9 10.6 63 6-74 13-77 (481)
44 TIGR01648 hnRNP-R-Q heterogene 98.8 1.8E-08 3.9E-13 87.5 8.5 58 8-73 246-305 (578)
45 KOG0123|consensus 98.8 1.4E-08 3.1E-13 84.0 7.2 82 7-111 10-91 (369)
46 KOG0144|consensus 98.8 1E-08 2.2E-13 85.7 6.1 72 8-80 137-211 (510)
47 TIGR01648 hnRNP-R-Q heterogene 98.8 1.7E-08 3.7E-13 87.7 7.2 66 6-72 69-135 (578)
48 PLN03121 nucleic acid binding 98.8 3.5E-08 7.6E-13 77.3 8.2 64 6-73 16-79 (243)
49 KOG0126|consensus 98.8 8E-10 1.7E-14 83.6 -1.2 67 5-72 45-112 (219)
50 KOG0108|consensus 98.8 1.5E-08 3.3E-13 85.4 6.3 73 4-77 27-100 (435)
51 KOG4206|consensus 98.7 2.5E-08 5.4E-13 77.1 6.5 67 5-74 23-89 (221)
52 KOG4208|consensus 98.7 3E-08 6.4E-13 76.0 6.6 67 8-75 62-130 (214)
53 KOG0145|consensus 98.7 3.7E-08 7.9E-13 78.3 7.1 67 8-75 54-121 (360)
54 PLN03213 repressor of silencin 98.7 3.3E-08 7.2E-13 84.2 6.8 72 5-81 20-93 (759)
55 KOG0149|consensus 98.7 2.9E-08 6.3E-13 77.4 4.9 68 5-74 22-90 (247)
56 KOG0111|consensus 98.6 3.6E-08 7.9E-13 76.8 4.6 69 7-75 21-90 (298)
57 KOG0121|consensus 98.6 9E-08 2E-12 69.0 6.2 76 8-88 49-125 (153)
58 KOG0117|consensus 98.6 8.2E-08 1.8E-12 80.6 6.7 66 6-72 94-161 (506)
59 KOG0145|consensus 98.6 1.3E-07 2.8E-12 75.3 7.5 62 11-73 294-356 (360)
60 KOG0117|consensus 98.6 1.5E-07 3.2E-12 79.0 7.2 60 8-75 272-332 (506)
61 KOG0124|consensus 98.5 8.1E-08 1.8E-12 79.4 4.2 62 9-71 127-189 (544)
62 KOG0415|consensus 98.5 1.7E-07 3.8E-12 77.1 5.7 95 10-105 254-355 (479)
63 KOG0127|consensus 98.5 2.9E-07 6.4E-12 79.0 6.6 68 4-72 301-375 (678)
64 KOG0146|consensus 98.5 4.5E-07 9.8E-12 72.4 6.6 70 9-79 33-105 (371)
65 KOG0147|consensus 98.4 4E-07 8.7E-12 77.8 5.8 68 4-72 287-355 (549)
66 KOG0131|consensus 98.4 4.7E-07 1E-11 68.5 4.9 63 10-73 24-87 (203)
67 KOG0144|consensus 98.3 1.2E-06 2.6E-11 73.5 6.5 68 8-76 47-118 (510)
68 KOG0105|consensus 98.3 7.1E-07 1.5E-11 68.0 4.5 63 9-74 20-82 (241)
69 KOG0109|consensus 98.3 1E-06 2.3E-11 70.8 5.1 56 10-73 93-148 (346)
70 KOG4661|consensus 98.3 1.2E-06 2.5E-11 76.0 5.7 62 10-72 420-482 (940)
71 KOG0110|consensus 98.2 1.7E-06 3.6E-11 76.0 4.9 75 4-79 622-697 (725)
72 KOG0131|consensus 98.1 2.9E-06 6.3E-11 64.3 4.4 63 11-74 112-176 (203)
73 KOG0146|consensus 98.1 2.7E-06 5.9E-11 68.0 3.7 64 10-74 300-364 (371)
74 KOG4212|consensus 98.1 9.5E-06 2.1E-10 68.6 6.5 71 4-74 53-123 (608)
75 KOG0153|consensus 97.9 4.9E-05 1.1E-09 62.4 6.8 63 6-74 239-302 (377)
76 KOG0109|consensus 97.8 4.5E-05 9.7E-10 61.6 6.4 57 8-72 15-71 (346)
77 KOG2314|consensus 97.8 3.9E-05 8.4E-10 66.4 6.2 64 7-71 76-140 (698)
78 KOG4209|consensus 97.8 2.6E-05 5.6E-10 61.0 3.9 68 5-74 111-179 (231)
79 KOG4212|consensus 97.8 3.3E-05 7.1E-10 65.4 4.6 63 5-72 546-608 (608)
80 KOG0226|consensus 97.8 2.5E-05 5.4E-10 61.9 3.4 62 10-71 204-266 (290)
81 KOG0533|consensus 97.7 8.7E-05 1.9E-09 58.5 6.0 72 4-76 92-163 (243)
82 KOG0132|consensus 97.6 0.00013 2.9E-09 65.0 6.3 59 8-72 434-492 (894)
83 KOG1190|consensus 97.6 0.00035 7.6E-09 58.7 8.2 61 10-75 313-373 (492)
84 KOG4660|consensus 97.6 2.8E-05 6E-10 66.9 1.6 56 9-69 89-144 (549)
85 KOG4454|consensus 97.5 0.0001 2.3E-09 57.5 4.2 71 2-73 15-85 (267)
86 PF08952 DUF1866: Domain of un 97.5 0.00051 1.1E-08 50.3 7.5 59 6-73 47-105 (146)
87 KOG2068|consensus 97.5 4.4E-05 9.5E-10 62.2 1.4 83 18-106 102-189 (327)
88 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00051 1.1E-08 41.9 4.8 42 7-54 12-53 (53)
89 PF11608 Limkain-b1: Limkain b 97.3 0.00039 8.3E-09 46.8 4.3 58 8-75 19-77 (90)
90 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00097 2.1E-08 45.9 6.1 63 8-72 18-89 (100)
91 smart00356 ZnF_C3H1 zinc finge 97.2 0.00017 3.8E-09 37.4 1.4 25 77-101 2-26 (27)
92 PF00642 zf-CCCH: Zinc finger 97.1 6.5E-05 1.4E-09 39.8 -0.7 26 77-102 1-27 (27)
93 KOG0106|consensus 97.0 0.00048 1E-08 53.5 2.4 61 5-73 11-71 (216)
94 KOG4205|consensus 97.0 0.00053 1.2E-08 55.9 2.5 66 5-72 16-82 (311)
95 KOG0106|consensus 96.8 0.00069 1.5E-08 52.6 2.2 58 9-74 113-170 (216)
96 PF08777 RRM_3: RNA binding mo 96.8 0.003 6.5E-08 43.6 5.1 58 9-72 15-77 (105)
97 KOG0151|consensus 96.4 0.0051 1.1E-07 54.9 5.1 64 8-72 187-254 (877)
98 KOG0116|consensus 96.2 0.0056 1.2E-07 51.8 4.1 66 5-72 298-364 (419)
99 KOG4210|consensus 95.9 0.0039 8.4E-08 50.2 1.6 69 5-75 195-264 (285)
100 KOG4205|consensus 95.9 0.0079 1.7E-07 49.1 3.2 66 6-73 108-174 (311)
101 KOG1456|consensus 95.9 0.056 1.2E-06 45.4 8.2 97 10-111 303-421 (494)
102 PF04059 RRM_2: RNA recognitio 95.8 0.092 2E-06 35.9 8.0 64 7-73 17-85 (97)
103 KOG1548|consensus 95.8 0.029 6.4E-07 46.4 6.3 64 8-72 147-218 (382)
104 PF04847 Calcipressin: Calcipr 95.8 0.038 8.2E-07 41.9 6.5 65 7-77 7-73 (184)
105 KOG4285|consensus 95.7 0.025 5.3E-07 46.2 5.3 51 11-68 212-262 (350)
106 PF15023 DUF4523: Protein of u 95.5 0.046 1E-06 40.3 5.8 55 10-72 105-159 (166)
107 KOG0120|consensus 95.4 0.012 2.5E-07 50.8 2.8 63 9-72 303-366 (500)
108 KOG1365|consensus 95.3 0.015 3.2E-07 48.9 2.8 78 4-82 289-369 (508)
109 KOG1456|consensus 95.0 0.087 1.9E-06 44.3 6.6 62 10-76 137-200 (494)
110 KOG4307|consensus 94.9 0.06 1.3E-06 48.3 5.8 66 5-71 877-943 (944)
111 KOG4211|consensus 94.8 0.059 1.3E-06 46.3 5.3 64 5-72 20-83 (510)
112 KOG1457|consensus 94.6 0.17 3.7E-06 40.0 6.9 61 11-72 50-115 (284)
113 KOG1855|consensus 94.4 0.037 8.1E-07 46.9 3.1 53 6-59 242-308 (484)
114 PF11767 SET_assoc: Histone ly 93.5 0.13 2.7E-06 32.9 3.6 53 8-69 13-65 (66)
115 KOG4211|consensus 93.4 0.12 2.6E-06 44.5 4.3 72 8-81 116-188 (510)
116 KOG1190|consensus 93.1 0.19 4.1E-06 42.7 5.0 72 10-86 165-243 (492)
117 KOG1995|consensus 92.2 0.14 3E-06 42.4 3.1 62 10-72 81-151 (351)
118 KOG0128|consensus 90.3 0.086 1.9E-06 48.0 0.1 68 6-74 747-814 (881)
119 KOG0112|consensus 89.3 0.34 7.4E-06 44.5 3.1 56 11-72 471-528 (975)
120 KOG2416|consensus 89.1 0.17 3.7E-06 44.7 1.0 64 10-78 459-525 (718)
121 KOG4574|consensus 88.9 0.29 6.2E-06 44.9 2.3 91 12-116 315-407 (1007)
122 KOG1457|consensus 88.2 1.1 2.4E-05 35.5 4.9 50 9-62 224-273 (284)
123 KOG1040|consensus 88.1 0.16 3.5E-06 41.7 0.2 28 75-102 73-100 (325)
124 PF03880 DbpA: DbpA RNA bindin 87.2 1.8 3.9E-05 27.5 4.7 43 22-72 32-74 (74)
125 PF07576 BRAP2: BRCA1-associat 87.1 2.8 6E-05 29.2 5.9 42 22-64 40-81 (110)
126 PF03439 Spt5-NGN: Early trans 86.7 1.1 2.4E-05 29.4 3.6 39 22-64 33-71 (84)
127 KOG2494|consensus 86.6 0.23 5E-06 40.8 0.3 26 78-103 36-62 (331)
128 KOG2591|consensus 86.6 0.68 1.5E-05 40.8 3.1 58 10-73 190-250 (684)
129 KOG3152|consensus 86.3 0.28 6E-06 39.2 0.6 55 11-66 90-157 (278)
130 KOG0115|consensus 84.4 0.98 2.1E-05 36.2 2.8 60 10-70 46-109 (275)
131 KOG2135|consensus 84.2 0.75 1.6E-05 39.7 2.3 59 9-74 387-445 (526)
132 PF08675 RNA_bind: RNA binding 83.6 4 8.6E-05 27.4 5.1 42 10-59 23-64 (87)
133 KOG4206|consensus 82.9 4.5 9.7E-05 31.7 5.9 51 18-72 168-219 (221)
134 KOG0128|consensus 82.2 0.26 5.6E-06 45.0 -1.3 59 9-68 681-740 (881)
135 KOG1365|consensus 81.4 3.1 6.7E-05 35.4 4.8 50 5-55 171-224 (508)
136 KOG4213|consensus 81.2 4.3 9.3E-05 31.1 5.1 59 5-67 119-179 (205)
137 KOG4676|consensus 75.4 4.8 0.0001 34.2 4.3 63 8-72 20-86 (479)
138 PF14608 zf-CCCH_2: Zinc finge 73.8 1.8 3.9E-05 20.7 0.9 12 89-100 7-18 (19)
139 KOG4307|consensus 73.6 1.1 2.5E-05 40.5 0.1 66 9-75 448-514 (944)
140 KOG2494|consensus 72.5 2.4 5.1E-05 35.0 1.7 36 75-114 67-102 (331)
141 COG5252 Uncharacterized conser 72.0 1.3 2.9E-05 35.2 0.2 39 65-107 75-113 (299)
142 PRK08559 nusG transcription an 70.6 17 0.00036 26.4 5.7 33 23-59 36-68 (153)
143 KOG1763|consensus 70.1 2 4.4E-05 35.1 0.8 30 76-105 89-118 (343)
144 KOG4019|consensus 64.7 11 0.00023 28.9 3.7 39 35-73 49-88 (193)
145 PF15513 DUF4651: Domain of un 61.3 30 0.00066 21.8 4.8 26 5-31 4-29 (62)
146 KOG1999|consensus 60.6 18 0.0004 34.0 5.1 45 22-71 199-243 (1024)
147 KOG0804|consensus 60.3 15 0.00033 31.7 4.3 44 20-64 99-142 (493)
148 COG5152 Uncharacterized conser 60.1 3.4 7.3E-05 32.2 0.4 65 39-103 85-166 (259)
149 KOG1677|consensus 60.1 4.8 0.00011 32.3 1.3 33 71-103 169-202 (332)
150 PF11823 DUF3343: Protein of u 57.8 14 0.00029 23.3 2.9 30 38-67 2-31 (73)
151 KOG1595|consensus 56.9 5.9 0.00013 34.7 1.3 25 77-101 234-258 (528)
152 PF02714 DUF221: Domain of unk 55.8 14 0.0003 29.4 3.3 33 40-74 1-33 (325)
153 KOG2193|consensus 55.1 12 0.00026 32.4 2.8 62 37-115 37-99 (584)
154 COG3309 VapD Uncharacterized v 53.4 30 0.00064 23.6 4.0 43 4-58 20-62 (96)
155 KOG1813|consensus 53.2 4.7 0.0001 33.0 0.1 28 75-102 182-210 (313)
156 PF03467 Smg4_UPF3: Smg-4/UPF3 53.0 27 0.00059 26.0 4.2 45 34-78 52-101 (176)
157 KOG0112|consensus 53.0 3.9 8.5E-05 37.9 -0.4 63 9-72 386-448 (975)
158 PF10309 DUF2414: Protein of u 52.2 48 0.001 20.7 4.6 41 10-57 19-62 (62)
159 KOG4660|consensus 51.1 17 0.00038 32.0 3.2 53 20-72 413-470 (549)
160 KOG0105|consensus 50.2 39 0.00084 26.3 4.7 57 9-72 129-187 (241)
161 KOG4849|consensus 49.1 20 0.00043 30.3 3.1 64 10-74 95-161 (498)
162 COG5084 YTH1 Cleavage and poly 48.7 9 0.0002 31.1 1.1 32 76-107 101-132 (285)
163 PRK13817 ribosome-binding fact 48.2 29 0.00063 24.3 3.5 56 20-78 31-91 (119)
164 COG0018 ArgS Arginyl-tRNA synt 47.6 1.1E+02 0.0024 27.2 7.8 71 6-83 57-138 (577)
165 PRK13014 methionine sulfoxide 45.8 26 0.00056 26.6 3.1 62 42-104 104-170 (186)
166 PF08544 GHMP_kinases_C: GHMP 45.1 73 0.0016 19.6 5.5 45 9-58 36-80 (85)
167 KOG0153|consensus 44.6 11 0.00023 31.6 1.0 30 79-108 161-190 (377)
168 COG0858 RbfA Ribosome-binding 44.0 19 0.00042 25.2 2.1 64 11-78 25-95 (118)
169 PF07530 PRE_C2HC: Associated 43.7 39 0.00084 21.3 3.3 59 10-72 2-62 (68)
170 smart00596 PRE_C2HC PRE_C2HC d 40.7 39 0.00084 21.7 2.9 60 10-73 2-63 (69)
171 KOG2891|consensus 40.1 4.5 9.7E-05 33.2 -1.9 52 10-62 176-247 (445)
172 KOG2185|consensus 39.6 20 0.00044 30.7 1.9 42 65-106 126-167 (486)
173 PF14268 YoaP: YoaP-like 39.6 18 0.00038 21.2 1.1 38 41-78 4-43 (44)
174 PRK14548 50S ribosomal protein 39.4 95 0.0021 20.5 4.7 46 10-57 35-81 (84)
175 PLN02805 D-lactate dehydrogena 36.6 88 0.0019 27.6 5.4 57 17-75 291-347 (555)
176 TIGR00405 L26e_arch ribosomal 35.3 36 0.00077 24.1 2.4 33 23-59 28-60 (145)
177 PRK12448 dihydroxy-acid dehydr 35.1 83 0.0018 28.3 5.0 35 36-73 447-481 (615)
178 smart00738 NGN In Spt5p, this 33.6 59 0.0013 21.2 3.1 22 38-59 60-81 (106)
179 PF02033 RBFA: Ribosome-bindin 33.6 1.2E+02 0.0027 20.0 4.8 35 22-59 30-65 (104)
180 PRK00521 rbfA ribosome-binding 33.3 92 0.002 21.5 4.2 54 21-77 35-94 (120)
181 KOG2193|consensus 33.1 4.4 9.6E-05 34.9 -3.0 66 11-78 95-160 (584)
182 PRK13259 regulatory protein Sp 33.1 91 0.002 21.2 3.9 73 22-115 2-75 (94)
183 KOG1492|consensus 32.6 19 0.00041 28.7 0.6 26 78-103 232-257 (377)
184 COG5041 SKB2 Casein kinase II, 32.5 22 0.00048 27.8 1.0 18 87-105 121-138 (242)
185 PF06373 CART: Cocaine and amp 31.3 18 0.00039 23.4 0.2 11 89-99 58-68 (73)
186 PRK11230 glycolate oxidase sub 31.1 1.1E+02 0.0024 26.4 5.1 56 18-75 215-270 (499)
187 TIGR00082 rbfA ribosome-bindin 31.0 1.2E+02 0.0027 20.8 4.5 53 22-77 34-92 (114)
188 TIGR00110 ilvD dihydroxy-acid 28.9 1.3E+02 0.0028 26.7 5.1 36 35-73 381-416 (535)
189 PRK06545 prephenate dehydrogen 28.2 1.3E+02 0.0029 24.5 4.9 49 12-62 307-356 (359)
190 TIGR00387 glcD glycolate oxida 28.0 1.4E+02 0.003 24.9 5.1 56 18-75 158-213 (413)
191 COG5507 Uncharacterized conser 28.0 86 0.0019 21.8 3.1 39 19-57 47-86 (117)
192 PF11061 DUF2862: Protein of u 27.9 1.3E+02 0.0029 19.0 3.8 36 7-47 15-52 (64)
193 KOG1492|consensus 27.8 44 0.00094 26.7 1.9 48 52-102 235-283 (377)
194 PF02829 3H: 3H domain; Inter 27.4 2E+02 0.0044 19.5 5.7 54 4-60 6-59 (98)
195 KOG2187|consensus 26.9 32 0.00069 30.3 1.1 39 34-72 60-98 (534)
196 PRK13818 ribosome-binding fact 26.7 1.5E+02 0.0033 20.7 4.3 56 19-77 30-92 (121)
197 PF10650 zf-C3H1: Putative zin 26.2 38 0.00083 17.1 0.9 13 89-102 11-23 (23)
198 KOG1134|consensus 25.6 87 0.0019 28.7 3.6 46 35-80 303-348 (728)
199 KOG0129|consensus 25.4 1.5E+02 0.0033 26.1 4.9 47 10-56 385-432 (520)
200 KOG1039|consensus 24.7 37 0.0008 28.3 1.0 25 80-104 9-33 (344)
201 PF13820 Nucleic_acid_bd: Puta 24.3 2.9E+02 0.0063 20.2 5.7 52 2-59 16-67 (149)
202 COG2039 Pcp Pyrrolidone-carbox 24.2 89 0.0019 24.2 2.9 28 49-76 18-45 (207)
203 PF04026 SpoVG: SpoVG; InterP 23.6 1.9E+02 0.0041 19.0 4.1 25 22-46 2-27 (84)
204 cd06408 PB1_NoxR The PB1 domai 23.4 2.3E+02 0.0051 18.8 4.9 44 4-56 23-66 (86)
205 PF09341 Pcc1: Transcription f 23.1 1.4E+02 0.0031 18.6 3.4 21 38-58 3-23 (76)
206 KOG0862|consensus 22.9 57 0.0012 25.5 1.7 33 8-47 87-119 (216)
207 KOG1040|consensus 22.6 35 0.00076 28.2 0.5 36 68-103 93-130 (325)
208 KOG1677|consensus 22.4 40 0.00086 27.0 0.8 34 73-106 126-161 (332)
209 PF15628 RRM_DME: RRM in Demet 22.3 66 0.0014 22.2 1.7 15 57-71 17-31 (103)
210 COG0129 IlvD Dihydroxyacid deh 22.2 2.3E+02 0.005 25.4 5.5 51 21-74 399-449 (575)
211 KOG2480|consensus 22.0 2E+02 0.0043 25.7 4.9 59 7-70 324-395 (602)
212 PF07999 RHSP: Retrotransposon 21.9 1.5E+02 0.0033 25.4 4.2 33 35-68 177-209 (439)
213 PF14882 GHL12: Hypothetical g 21.5 72 0.0016 19.2 1.6 16 42-57 38-53 (53)
214 TIGR03636 L23_arch archaeal ri 21.0 2.5E+02 0.0053 18.2 4.8 47 9-57 27-74 (77)
215 KOG3218|consensus 20.1 2.3E+02 0.0049 22.0 4.4 43 16-58 42-89 (208)
216 KOG1763|consensus 20.1 61 0.0013 26.7 1.4 22 89-110 176-198 (343)
217 PRK06131 dihydroxy-acid dehydr 20.0 2.7E+02 0.0059 24.9 5.5 35 35-72 399-435 (571)
No 1
>KOG2202|consensus
Probab=100.00 E-value=1.7e-38 Score=246.94 Aligned_cols=129 Identities=69% Similarity=1.194 Sum_probs=121.6
Q ss_pred ChhhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 1 ~q~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
+|.+||+|+|||+.|++.|||+|++++|++|..+|++|+|||.|..+++|++|+..|||+||+|+||+++++|+++|++|
T Consensus 74 ~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 74 LQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence 58899999999999994499999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCCCCcceeeecCCCHHHHHHHHhhcccccccCccCCCC
Q psy17806 81 CCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRKRSSRRSSRSRSR 129 (130)
Q Consensus 81 ~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 129 (130)
+|++|+.+.|++|+.|||||++.++++|.+.|++.+.+..+++|+++++
T Consensus 154 ~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~~~~~sra~~~ 202 (260)
T KOG2202|consen 154 ICGQFERTECSRGGACNFMHVKRLSRSLRRELYGRQRKRYPRRSRARAR 202 (260)
T ss_pred hhcccccccCCCCCcCcchhhhhhhHHHHHHhhhhhhcccccccccccc
Confidence 9999999999999999999999999999999999988887666654443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=5.4e-17 Score=140.63 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCC-----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~-----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
-.++|++||++|| +|||.|++|.|+.+.. +|..|+|||+|.+.++|.+|++.||||||+||+|.|+|++.++|.
T Consensus 528 ldedl~eDV~eEC-~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~ 606 (612)
T TIGR01645 528 IDEFLEGEIREEC-GKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFD 606 (612)
T ss_pred hHHHHHHHHHHHh-hcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhh
Confidence 3456999999999 7999999999998543 367899999999999999999999999999999999999999997
Q ss_pred hh
Q psy17806 79 EA 80 (130)
Q Consensus 79 ~a 80 (130)
.+
T Consensus 607 ~~ 608 (612)
T TIGR01645 607 HA 608 (612)
T ss_pred cc
Confidence 64
No 3
>smart00361 RRM_1 RNA recognition motif.
Probab=99.66 E-value=7e-16 Score=98.94 Aligned_cols=64 Identities=45% Similarity=0.782 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccCCceEEEE-Eee-CCC--CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMN-VCD-NLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 70 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~-v~~-~~~--~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~ 70 (130)
++|.+.+.++| ++||.|.+|. |.. +.+ ++++|++||+|.+.++|.+|++.|||++|+||+|+|.
T Consensus 3 ~~l~~~~~~~~-~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEE-EYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHH-HhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 56778888899 6999999995 443 333 7899999999999999999999999999999999874
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.65 E-value=3.9e-16 Score=129.68 Aligned_cols=75 Identities=29% Similarity=0.574 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
+.|.+|.+||++|| ++||.|+.|.|+.+ ...|+|||+|.+.++|.+|++.|||++|+||+|.|.|++++.|..+.
T Consensus 380 ~~~~~~~~dv~~e~-~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~ 454 (457)
T TIGR01622 380 NFDNEILDDVKEEC-SKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSC 454 (457)
T ss_pred hHHHHHHHHHHHHH-HhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhc
Confidence 46889999999999 79999999999864 35799999999999999999999999999999999999999987653
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=9.4e-16 Score=128.77 Aligned_cols=77 Identities=30% Similarity=0.495 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHhhccCCceEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
++|+++.+||+++| ++||.|++|.|+.+.. ....|+|||+|.++++|.+|+..|||++|+||+|.|.|++++.|.
T Consensus 427 ~~~~~~~edl~~~f-~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 427 EEYEEIYEDVKTEF-SKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred chHHHHHHHHHHHH-HhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 46899999999999 7999999999997532 345799999999999999999999999999999999999999886
Q ss_pred hh
Q psy17806 79 EA 80 (130)
Q Consensus 79 ~a 80 (130)
..
T Consensus 506 ~~ 507 (509)
T TIGR01642 506 AG 507 (509)
T ss_pred cc
Confidence 53
No 6
>KOG0120|consensus
Probab=99.59 E-value=3.2e-15 Score=126.69 Aligned_cols=77 Identities=27% Similarity=0.541 Sum_probs=71.2
Q ss_pred hhhhHHHHHHHHHHhhccCCceEEEEEeeC-CC---CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 2 QEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LG---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 2 q~~~d~~~eDi~~e~~skfG~I~~v~v~~~-~~---~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
.++|++|+|||+.|| ++||.|.+|.|+++ .. ....|+|||+|.+.+++++|+.+|+|+.|+||+|.+.|+++++|
T Consensus 416 d~EyeeIlEdvr~ec-~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 416 DEEYEEILEDVRTEC-AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred hHHHHHHHHHHHHHh-cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 378999999999999 89999999999987 43 34689999999999999999999999999999999999999999
Q ss_pred hh
Q psy17806 78 RE 79 (130)
Q Consensus 78 ~~ 79 (130)
..
T Consensus 495 ~~ 496 (500)
T KOG0120|consen 495 HA 496 (500)
T ss_pred hc
Confidence 64
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.57 E-value=2.3e-14 Score=87.69 Aligned_cols=56 Identities=30% Similarity=0.636 Sum_probs=50.8
Q ss_pred HHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 12 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 12 i~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
|++.| ++||+|.+|.+..+. .|.+||+|.+.++|..|++.|||++|+|++|.|+|+
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57789 799999999998763 599999999999999999999999999999999985
No 8
>KOG0147|consensus
Probab=99.55 E-value=8.4e-15 Score=123.98 Aligned_cols=71 Identities=34% Similarity=0.589 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
.+|.|||.+|| +|||+|..|.|..+. .|+|||+|.+.+.|..|+++|||+||+||.|++.|.|++.|....
T Consensus 464 ~eI~edV~Eec-~k~g~v~hi~vd~ns----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~F 534 (549)
T KOG0147|consen 464 QEIREDVIEEC-GKHGKVCHIFVDKNS----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKF 534 (549)
T ss_pred hHHHHHHHHHH-HhcCCeeEEEEccCC----CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhC
Confidence 57999999999 799999999999874 499999999999999999999999999999999999999987543
No 9
>KOG0148|consensus
Probab=99.47 E-value=1.4e-13 Score=108.86 Aligned_cols=103 Identities=18% Similarity=0.346 Sum_probs=83.8
Q ss_pred HHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh-------
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA------- 80 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a------- 80 (130)
.|+|++.| .+||+|.+.+|+++. +.+++|++||.|.+.++|+.||..|||.|+++|.|+..++.....++.
T Consensus 76 ~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfd 154 (321)
T KOG0148|consen 76 NEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFD 154 (321)
T ss_pred hHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHH
Confidence 48899999 799999999999875 689999999999999999999999999999999999999954432221
Q ss_pred -hhcccccCCCCCCCCcceeeecCCCHHHHHHHHhh
Q psy17806 81 -CCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR 115 (130)
Q Consensus 81 -~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~~ 115 (130)
+-+|....+|+ -+|.-+-- .++++|++++|..
T Consensus 155 eV~NQssp~Nts--VY~G~I~~-~lte~~mr~~Fs~ 187 (321)
T KOG0148|consen 155 EVYNQSSPDNTS--VYVGNIAS-GLTEDLMRQTFSP 187 (321)
T ss_pred HHhccCCCCCce--EEeCCcCc-cccHHHHHHhccc
Confidence 23454455676 57765332 6899999999974
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=5.6e-13 Score=107.01 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+.-.++|++.| ++||.|.+++|+.+. ++.++|++||+|.+.++|.+|+..|||..|+||+|.|+|....
T Consensus 280 ~~~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 280 DTDETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCCHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 34568899999 799999999999876 6889999999999999999999999999999999999998543
No 11
>KOG1548|consensus
Probab=99.42 E-value=4.6e-13 Score=108.65 Aligned_cols=70 Identities=33% Similarity=0.706 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccch
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFR 78 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~~f~ 78 (130)
..++.+||.++| .+||.|.+|.|+.. |+.|.|-|.|.+.++|..|++.|+||||+||+|+|+++ ..++|.
T Consensus 286 ~~dlkedl~eec-~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 286 LNDLKEDLTEEC-EKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred HHHHHHHHHHHH-HHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 356889999999 69999999999984 77899999999999999999999999999999999999 445554
No 12
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.39 E-value=2.6e-12 Score=93.41 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+.-.+||++.| ++||.|.++.|+.+. +++++|++||+|.+.++|++|++.|||..++|++|.|++..
T Consensus 45 ~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 45 GTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 34578999999 799999999999865 57899999999999999999999999999999999999983
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=6.8e-12 Score=78.12 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~ 68 (130)
..++|++.| ++||.|..+.+..+..++..|++||+|.+.++|.+|++.|||..++|++|+
T Consensus 11 t~~~l~~~f-~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 11 TEEELRDFF-SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SHHHHHHHH-HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CHHHHHHHH-HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 458999999 799999999999977788999999999999999999999999999999985
No 14
>KOG1996|consensus
Probab=99.35 E-value=1.6e-12 Score=104.03 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~--~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
-++|.+++++|| .|||+|..|.|....+ .+-...+||+|+..++|.+|+-.||||||+||.+.+.|+++++|+..
T Consensus 296 d~elede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~ 372 (378)
T KOG1996|consen 296 DEELEDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNL 372 (378)
T ss_pred cHHHHHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhhh
Confidence 468899999999 5999999999997543 45667999999999999999999999999999999999999999743
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.23 E-value=1.2e-10 Score=73.41 Aligned_cols=61 Identities=26% Similarity=0.417 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~ 68 (130)
.-.+||.+.| +.||.|..+.+..+..+..+|.+||+|.++++|.+|++.++|.+++||.|.
T Consensus 10 ~~~~~l~~~f-~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 10 TTEEDLRNFF-SRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp --HHHHHHHC-TTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCHHHHHHHH-HhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 3458999999 799999999999976677899999999999999999999999999999884
No 16
>KOG4207|consensus
Probab=99.22 E-value=9.2e-12 Score=95.65 Aligned_cols=66 Identities=18% Similarity=0.394 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...-+||+..| .|||.|-+|.|+.+. +..++||+||.|....+|+.|+.+|+|..++||.|.|+++
T Consensus 24 RTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 24 RTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34458999999 599999999999875 6789999999999999999999999999999999999887
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.22 E-value=5.7e-11 Score=95.40 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+.-.+||++.| ++||+|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..+.|++|.+.++.
T Consensus 14 ~~~e~~l~~~F-~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 14 TMTQEEIRSLF-TSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCCHHHHHHHH-HccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 34568999999 799999999999864 57889999999999999999999999999999999999873
No 18
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=1.2e-10 Score=70.82 Aligned_cols=62 Identities=31% Similarity=0.494 Sum_probs=55.7
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 70 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~ 70 (130)
-.+||+..| ++||.|..+.+..+. ++.++|++||+|.+.++|..|++.|+|..++|+.|.++
T Consensus 9 ~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 9 TEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 357899999 699999999999865 36788999999999999999999999999999999863
No 19
>KOG0107|consensus
Probab=99.18 E-value=4.2e-11 Score=89.78 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-..||..+| ++||.|.+|+|..++ .|||||+|+++.+|..|+..|||+.+.|..|.|+++..
T Consensus 22 a~k~eLE~~F-~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 22 ATKRELERAF-SKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred cchHHHHHHH-HhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4567899999 899999999999964 59999999999999999999999999999999999843
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.16 E-value=1.2e-10 Score=99.62 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=62.7
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
..++|++.| ++||.|.++.|..+.++.++|++||+|.+.++|.+|+..|||++++|++|.|.++....
T Consensus 298 ~~~~L~~~F-~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 298 TDEKLRELF-SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CHHHHHHHH-HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 458899999 79999999999998778899999999999999999999999999999999999986543
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=3.2e-10 Score=69.23 Aligned_cols=61 Identities=36% Similarity=0.556 Sum_probs=55.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 70 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~ 70 (130)
-.+||++.| .+||.|..+.+..+. +.+.|.+||+|.+.++|.+|++.|+|..++|++|.+.
T Consensus 12 ~~~~l~~~~-~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 12 TEEDLKELF-SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CHHHHHHHH-HhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 357899999 699999999999866 6678999999999999999999999999999999863
No 22
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=8.5e-10 Score=67.66 Aligned_cols=63 Identities=33% Similarity=0.563 Sum_probs=57.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
-.++|++.| ..||.|..+.+.........|.+||+|.+.++|..|++.++|..++|+.|.+.+
T Consensus 12 ~~~~i~~~~-~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 12 TEEDLRELF-SKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CHHHHHHHH-HhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 357899999 699999999999876556789999999999999999999999999999999864
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.11 E-value=1.6e-10 Score=94.83 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
++...++|++.| ++||.|++|+|+.+. +++++|++||+|.++++|.+|++.|||..+.+++|.+.++.
T Consensus 117 ~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 117 QDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 345678999999 799999999999764 57889999999999999999999999999999999999874
No 24
>KOG0113|consensus
Probab=99.09 E-value=2.8e-10 Score=91.16 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.|+.-+.+|+.+| ++||.|+.|.|+.+ .++.++|+|||+|+++.+...|.+..+|..++||.|.|++-
T Consensus 110 nydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 110 NYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred cccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 5777889999999 69999999999998 47899999999999999999999999999999999999987
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.08 E-value=9.5e-10 Score=93.14 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=56.5
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..++|++.| +.||.|.+|+|+.+. +|++||+|.+.++|..|+..|||..+.|++|.|.++..
T Consensus 289 t~~~L~~lF-~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 289 NCDRLFNLF-CVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CHHHHHHHH-HhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 457899999 799999999999863 69999999999999999999999999999999999843
No 26
>KOG0122|consensus
Probab=99.07 E-value=4.6e-10 Score=87.86 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=60.2
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-++||.+.| .+||.|..|.|.++. ++.++|++||.|.+.++|++|+..|||.-|+.-.|.|+|+..
T Consensus 202 ~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 202 REDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred ChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 357887778 699999999999976 688999999999999999999999999999999999999843
No 27
>KOG0127|consensus
Probab=99.06 E-value=3.8e-10 Score=96.40 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=65.0
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccchhh
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFREA 80 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~~f~~a 80 (130)
.||+..| ++||.|..|.||+...+.+.|++||.|....+|..|++.|||..++||+|-|+|+ +.+.|..+
T Consensus 132 ~dLk~vF-s~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~t 202 (678)
T KOG0127|consen 132 PDLKNVF-SNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDT 202 (678)
T ss_pred HHHHHHH-hhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccccc
Confidence 5899999 8999999999999888889999999999999999999999999999999999999 77777653
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.04 E-value=1.1e-09 Score=89.78 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~~~~ 75 (130)
...+||++.| ++||.|+.+.|+.+. +++++|++||+|.+.++|.+|++.|||..+.| ++|.|.++.+.
T Consensus 205 vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 205 ITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred ccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 3468999999 799999999999765 57889999999999999999999999999976 79999998554
No 29
>KOG0125|consensus
Probab=99.02 E-value=5.7e-10 Score=90.44 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=57.8
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-||+..| .+||+|++|.|+-|. ..++|++||+|++.+||.+|-.+|||..+.||+|.|.-+.-
T Consensus 111 pDL~aMF-~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 111 PDLRAMF-EKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ccHHHHH-HhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 5899999 599999999999986 45799999999999999999999999999999999988743
No 30
>KOG0124|consensus
Probab=99.01 E-value=7.1e-10 Score=91.36 Aligned_cols=75 Identities=21% Similarity=0.528 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCC-----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~-----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
-+++..+|.+|| +|||.|.+|.|..... ......+||+|....++.+|..+||||||+||.|.++.++...|..
T Consensus 461 De~LegEi~EEC-gKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 461 DEDLEGEITEEC-GKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred hhHHHHHHHHHH-hcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 356778999999 8999999999996432 2345689999999999999999999999999999999998887754
Q ss_pred h
Q psy17806 80 A 80 (130)
Q Consensus 80 a 80 (130)
+
T Consensus 540 ~ 540 (544)
T KOG0124|consen 540 S 540 (544)
T ss_pred c
Confidence 3
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.00 E-value=1.5e-09 Score=92.84 Aligned_cols=67 Identities=24% Similarity=0.472 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+..+++|++.| ++||.|.+|+|+++. +++++|++||+|.+.++|.+|+..||+..+.|++|.+.++.
T Consensus 11 ~vte~~L~~~F-~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 11 DVTEAKLYDLF-KPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 34568999999 799999999999876 47889999999999999999999999999999999999874
No 32
>KOG0114|consensus
Probab=99.00 E-value=9.8e-10 Score=76.51 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccchhh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFREA 80 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~~f~~a 80 (130)
|+-.-|++.+.| ++||.|..|+|-.. ...+|-+||.|++..+|.+|+..|+|..+++|.+.|-|+ |...|+..
T Consensus 28 ~~ITseemydlF-Gkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~~~~~ 101 (124)
T KOG0114|consen 28 FKITSEEMYDLF-GKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDAFKLM 101 (124)
T ss_pred ccccHHHHHHHh-hcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHHHHHH
Confidence 445568999999 89999999999754 346899999999999999999999999999999999999 44455433
No 33
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=86.28 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
++...+||++.| +.||+|++|.|+.+. ...|++||+|.++++|..|+. |||..+.||+|.+..++.
T Consensus 14 ~~tTE~dLrefF-S~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 14 LKATERDIKEFF-SFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 345578999999 799999999999864 357999999999999999995 999999999999998743
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.99 E-value=8.3e-10 Score=96.23 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
|+...++|++.| ++||.|.+|.|+.+. +++++|++||+|.+.++|.+|++.|||..++||.|.+...
T Consensus 117 ~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 117 FELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 345578999999 799999999999764 5789999999999999999999999999999999999854
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.96 E-value=3.1e-09 Score=88.40 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.++|++.| ++||.|..|.|+.+. ++..+|++||+|.+.++|.+|+..|||..+.|++|.|.|+.
T Consensus 199 te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 199 TEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 467899999 799999999999765 35889999999999999999999999999999999999974
No 36
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.93 E-value=2.3e-09 Score=87.60 Aligned_cols=100 Identities=21% Similarity=0.443 Sum_probs=77.0
Q ss_pred HhhccCCceEEEEEeeCCC--CCce--eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccC-C
Q psy17806 15 ECEDKYGEIEEMNVCDNLG--DHLV--GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMG-E 89 (130)
Q Consensus 15 e~~skfG~I~~v~v~~~~~--~~~~--G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~~~-~ 89 (130)
|++++||+|.+|.|-+... .... .=|||+|.+.++|..||.+.+|.+++||.|.|.|- .++| |..|..+ .
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG-TTKY----CtsYLRn~~ 213 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG-TTKY----CTSYLRNAV 213 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC-chHH----HHHHHcCCC
Confidence 4448999999999986431 1122 24699999999999999999999999999999984 6777 9999988 7
Q ss_pred CCCCCCcceeeecCCCHHHH--HHHHhhccccc
Q psy17806 90 CTRSGFCNFMHLKPISRELR--RYLYSRRKRSS 120 (130)
Q Consensus 90 c~rg~~Cn~lh~~~~~~~l~--~~l~~~~~~~~ 120 (130)
|+. +.|=|||-..+-.+.. ++|-..|.+..
T Consensus 214 CpN-p~CMyLHEpg~e~Ds~tK~el~n~qh~~~ 245 (480)
T COG5175 214 CPN-PDCMYLHEPGPEKDSLTKDELCNSQHKLH 245 (480)
T ss_pred CCC-CCeeeecCCCcccccccHHHHhhhhhhcc
Confidence 996 7999999876554432 34555544443
No 37
>KOG0148|consensus
Probab=98.90 E-value=4.5e-09 Score=83.53 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=55.7
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.++|++.| +.||.|.+|+|.++ +|++||+|++.|+|..||-.|||..+.|.+|.|.+-.+
T Consensus 178 e~~mr~~F-s~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 178 EDLMRQTF-SPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHhc-ccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 46788899 89999999999986 69999999999999999999999999999999998744
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=7.1e-09 Score=87.23 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
.-.++|++.| ++||.|..+.|+.+. ++.++|++||+|.+.++|..|+..|||..++|+.|.|.++.
T Consensus 307 ~~~~~l~~~f-~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 307 LGEDQIKELL-ESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCHHHHHHHH-HhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3458899999 699999999998764 57789999999999999999999999999999999999973
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.88 E-value=5.9e-09 Score=77.45 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...++|++.| .+||.|..+.|..+. ++.++|++||+|.+.++|..|+..|+|..|.|++|.|.+..
T Consensus 126 ~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 126 DVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 44578999999 799999999999874 68899999999999999999999999999999999999963
No 40
>KOG0123|consensus
Probab=98.85 E-value=9e-09 Score=85.17 Aligned_cols=68 Identities=26% Similarity=0.488 Sum_probs=60.9
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
.+|++.| +.||+|++++|..+..+ ++|+ ||+|+++++|.+|+..|||..+.|++|.|........+.+
T Consensus 91 ~~~~d~f-~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 91 KSLYDTF-SEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHHHHHH-HhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcc
Confidence 6788888 89999999999998766 8999 9999999999999999999999999999998866555544
No 41
>KOG0130|consensus
Probab=98.85 E-value=4.4e-09 Score=76.42 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
+..++||.+.| +.||+|++|++--+. ++-.+|++.|+|++.++|++|+.+|||..+-|.+|.|+|+
T Consensus 83 EatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 83 EATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred chhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45679999999 799999999998653 6789999999999999999999999999999999999998
No 42
>KOG0110|consensus
Probab=98.83 E-value=2.3e-08 Score=87.32 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCC----CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGD----HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~----~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
.|++..+++...| .+.|.|.++.|.....+ .+.|++||+|.++++|+.|++.|+|..++|..|.+.+++ .+- .
T Consensus 524 nf~Tt~e~l~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k~-~ 600 (725)
T KOG0110|consen 524 NFDTTLEDLEDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NKP-A 600 (725)
T ss_pred CcccchhHHHHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Ccc-c
Confidence 4778889999999 69999999999964322 356999999999999999999999999999999999997 111 1
Q ss_pred hhhcccccCCCCCCCCcceeeecCCCHHHH----HHHHhh
Q psy17806 80 ACCRQYEMGECTRSGFCNFMHLKPISRELR----RYLYSR 115 (130)
Q Consensus 80 a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~----~~l~~~ 115 (130)
+.-+ .+|+.-..|+=+||+++|-... ++||..
T Consensus 601 ~~~g----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 601 STVG----KKKSKKKKGTKILVRNIPFEATKREVRKLFTA 636 (725)
T ss_pred cccc----cccccccccceeeeeccchHHHHHHHHHHHhc
Confidence 1111 4677767799999999887654 457765
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.83 E-value=3.2e-08 Score=83.91 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--CCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL--NNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l--nGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.. +|++||+|.+.++|.+|++.| |+..+.|++|.|.|+..
T Consensus 13 ~~te~~L~~~f-~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 13 DVVEADLVEAL-IPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CCCHHHHHHHH-HhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 44578999999 79999999999863 689999999999999999974 78999999999999853
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.81 E-value=1.8e-08 Score=87.55 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=53.4
Q ss_pred HHHHHHHHhhccC--CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skf--G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.++|++.| ++| |.|++|.+.+ |++||+|.+.++|.+|++.|||..|+|++|.|+++.
T Consensus 246 tee~L~~~F-~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 246 TEEIIEKSF-SEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred CHHHHHHHH-HhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 458899999 799 9999998764 799999999999999999999999999999999993
No 45
>KOG0123|consensus
Probab=98.80 E-value=1.4e-08 Score=83.97 Aligned_cols=82 Identities=20% Similarity=0.348 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYE 86 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~ 86 (130)
....+|++.| +.+|+|++|+||++. . +.|++||.|.++++|.+|+..||...+.|++|.+-++..+.-.
T Consensus 10 v~e~~l~~~f-~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-------- 78 (369)
T KOG0123|consen 10 VTEAMLFDKF-SPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-------- 78 (369)
T ss_pred CChHHHHHHh-cccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce--------
Confidence 3467889999 899999999999998 5 9999999999999999999999999999999999999554322
Q ss_pred cCCCCCCCCcceeeecCCCHHHHHH
Q psy17806 87 MGECTRSGFCNFMHLKPISRELRRY 111 (130)
Q Consensus 87 ~~~c~rg~~Cn~lh~~~~~~~l~~~ 111 (130)
+.|+++++++.++
T Consensus 79 ------------~~i~nl~~~~~~~ 91 (369)
T KOG0123|consen 79 ------------VFIKNLDESIDNK 91 (369)
T ss_pred ------------eeecCCCcccCcH
Confidence 6777777776654
No 46
>KOG0144|consensus
Probab=98.79 E-value=1e-08 Score=85.75 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=62.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe-CC--eeEEEEeccCccchhh
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GG--RPVYAELSPVTDFREA 80 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f-~G--R~I~v~~~~~~~f~~a 80 (130)
.+.||++.| ++||.|+++.|.++..+.++|++||+|.+.+-|..||++|||.+- .| .||.|.|++..+-+..
T Consensus 137 te~evr~iF-s~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 137 TENEVREIF-SRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cHHHHHHHH-HhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 457999999 899999999999988888999999999999999999999999864 44 7999999977654433
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.77 E-value=1.7e-08 Score=87.67 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~-GR~I~v~~~ 72 (130)
+..+++|++.| ++||.|.+++|+.+.++.++|++||+|.+.++|.+|++.|||..+. |+.|.+..+
T Consensus 69 ~~tEd~L~~~F-~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 69 DLYEDELVPLF-EKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCHHHHHHHH-HhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 44578999999 7999999999998877889999999999999999999999999884 787766544
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.77 E-value=3.5e-08 Score=77.33 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
....+||++.| +.||+|.+|.|+.+ +...|++||+|.++++|..|+ .|||..+.+++|.+.-++
T Consensus 16 ~tTE~dLrefF-S~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 16 KATEKDVYDFF-SHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 44578999999 89999999999987 345689999999999999999 699999999999998764
No 49
>KOG0126|consensus
Probab=98.76 E-value=8e-10 Score=83.58 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
|+..+.||.--| |+||+|++|.+.++. ++.++||+|+.|++..+...|+..|||-.+.||.|.|+..
T Consensus 45 ~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 45 YELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 555667888888 899999999999876 6899999999999999999999999999999999999865
No 50
>KOG0108|consensus
Probab=98.76 E-value=1.5e-08 Score=85.35 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
.|+-..++|...| +..|.|.+++++.+. ++.++|++|++|.+.++|..|++.|||..+.||+|.|.|...++-
T Consensus 27 p~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 27 PYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 3677789999999 799999999999765 689999999999999999999999999999999999999865543
No 51
>KOG4206|consensus
Probab=98.74 E-value=2.5e-08 Score=77.07 Aligned_cols=67 Identities=18% Similarity=0.409 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-+++..-|...| ++||+|.+|.+... .+++|-|||.|.+.+.|..|+++|+|..|-|+++.+.|+..
T Consensus 23 ~~elkrsL~~LF-sqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 23 KDELKRSLYLLF-SQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHHHHHHHHHH-HhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 356677777789 89999999999975 57899999999999999999999999999999999999933
No 52
>KOG4208|consensus
Probab=98.73 E-value=3e-08 Score=75.97 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccC-CceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 8 FFEDVFVECEDKY-GEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 8 ~~eDi~~e~~skf-G~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+...+..-| .+| |.|..+++.+|. ++.++|++||+|++++.|.-|...||+.-|.|+.|.|.+.|.+
T Consensus 62 ~e~~~~~~~-~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 62 FETEILNYF-RQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hHHHHhhhh-hhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 445667777 577 888888888876 6899999999999999999999999999999999999999887
No 53
>KOG0145|consensus
Probab=98.73 E-value=3.7e-08 Score=78.35 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=61.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
..|+++..| +..|+|++++++++. ++++.|++||.|.++++|.+|+..|||-.+..+.|.|.|+...
T Consensus 54 TqdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 54 TQDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred CHHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 357899999 899999999999876 6899999999999999999999999999999999999999553
No 54
>PLN03213 repressor of silencing 3; Provisional
Probab=98.71 E-value=3.3e-08 Score=84.19 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCH--HHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE--EDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~--e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
|+...+||...| +.||.|.+|.|++.. + +||+||+|.+. .++.+||..|||..+.||.|.|.-+.+ .|....
T Consensus 20 ydVTEDDLravF-SeFGsVkdVEIpRET-G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP-~YLeRL 93 (759)
T PLN03213 20 ESVGRDDLLKIF-SPMGTVDAVEFVRTK-G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE-HYLARL 93 (759)
T ss_pred CCCCHHHHHHHH-HhcCCeeEEEEeccc-C--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH-HHHHHH
Confidence 455678999999 799999999999543 3 99999999987 689999999999999999999998733 344333
No 55
>KOG0149|consensus
Probab=98.67 E-value=2.9e-08 Score=77.36 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|+.-.|+|++-| .+||+|++.+|+.+. +++++|++||+|.+.++|.+|++..| -.+|||...|.++..
T Consensus 22 w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 22 WETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred cccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 445568999999 599999999888765 68999999999999999999998766 458999999998855
No 56
>KOG0111|consensus
Probab=98.64 E-value=3.6e-08 Score=76.75 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+.-|-|....+-.||.|.+|.+|.+- +.+-+|++||+|...|+|.+||..||+..+-||.|+|.|+-..
T Consensus 21 eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 21 EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 34444443333799999999999764 4677999999999999999999999999999999999999443
No 57
>KOG0121|consensus
Probab=98.63 E-value=9e-08 Score=68.97 Aligned_cols=76 Identities=22% Similarity=0.386 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYE 86 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~ 86 (130)
.+|.|++.| ++-|.|..|.+--+. +..+-|+.||+|.+.++|..|++.+||..++.|+|.+++-+- |.++ +||-
T Consensus 49 tEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G--F~eG--RQyG 123 (153)
T KOG0121|consen 49 TEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG--FVEG--RQYG 123 (153)
T ss_pred cHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc--chhh--hhhc
Confidence 468899999 899999999998664 345789999999999999999999999999999999998643 4443 4554
Q ss_pred cC
Q psy17806 87 MG 88 (130)
Q Consensus 87 ~~ 88 (130)
.|
T Consensus 124 RG 125 (153)
T KOG0121|consen 124 RG 125 (153)
T ss_pred CC
Confidence 33
No 58
>KOG0117|consensus
Probab=98.63 E-value=8.2e-08 Score=80.59 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEe-CCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f-~GR~I~v~~~ 72 (130)
|.+++||...| .+-|+|-++++..+ -++..+|++||+|.+.++|+.|++.||+..+ .|+.|.|..+
T Consensus 94 D~~EdeLvplf-EkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 94 DVFEDELVPLF-EKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred cccchhhHHHH-HhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 56778999999 59999999999987 5788999999999999999999999999987 8999998875
No 59
>KOG0145|consensus
Probab=98.63 E-value=1.3e-07 Score=75.28 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=57.4
Q ss_pred HHHHHhhccCCceEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~-~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-+++.| +.||.|..|+|.++.+ .+-+|++||...+-++|..|+..|||..+++|.|+|.|-.
T Consensus 294 ~LWQlF-gpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 294 ILWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred HHHHHh-CcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 478888 8999999999999864 7889999999999999999999999999999999999863
No 60
>KOG0117|consensus
Probab=98.59 E-value=1.5e-07 Score=79.04 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=53.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVT 75 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~ 75 (130)
..|-|+++| ++||.|+.|+.+++ ++||.|.+.++|.+|++.|||..++|.+|-|.++ |+.
T Consensus 272 TeE~lk~~F-~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 272 TEETLKKLF-NEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred hHHHHHHHH-HhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 456677778 79999999999864 9999999999999999999999999999999999 443
No 61
>KOG0124|consensus
Probab=98.53 E-value=8.1e-08 Score=79.38 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=56.1
Q ss_pred HHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
++-|+..| ..||.|++|.+..++ +.+-+|++||+|+-+|.|+.|++.|||..++||-|.|..
T Consensus 127 EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 127 EDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 45578888 799999999999765 688999999999999999999999999999999998874
No 62
>KOG0415|consensus
Probab=98.51 E-value=1.7e-07 Score=77.07 Aligned_cols=95 Identities=19% Similarity=0.361 Sum_probs=76.8
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCcc--chhhhh---
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTD--FREACC--- 82 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~~--f~~a~c--- 82 (130)
|||.-.| |.||+|.++.|.++. ++.+.-++||+|++.++..+|.-.|++-.++.|.|+|+|+ ++.+ |+..--
T Consensus 254 eDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~~~~~ 332 (479)
T KOG0415|consen 254 EDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKGSQKE 332 (479)
T ss_pred cchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccccccccc
Confidence 6788888 899999999999864 5667789999999999999999999999999999999999 4544 543321
Q ss_pred cccccCCCCCCCCcceeeecCCC
Q psy17806 83 RQYEMGECTRSGFCNFMHLKPIS 105 (130)
Q Consensus 83 ~~~~~~~c~rg~~Cn~lh~~~~~ 105 (130)
..+-...|..|..-+|.|-.++.
T Consensus 333 ~d~~~~d~~~~~~~k~~~kd~~~ 355 (479)
T KOG0415|consen 333 TDHRAKDCVGGPSSKFIHKDQNR 355 (479)
T ss_pred cchhhhccccCCcccchhccCCC
Confidence 11222379998999999986654
No 63
>KOG0127|consensus
Probab=98.49 E-value=2.9e-07 Score=79.02 Aligned_cols=68 Identities=19% Similarity=0.384 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHh-----CC-CEeCCeeEEEEec
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDL-----NN-RWFGGRPVYAELS 72 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~l-----nG-r~f~GR~I~v~~~ 72 (130)
.||...|+|.++| ++||+|.-+.|+.+. ++|++|.+||.|.++.+|+.||.+. .| -.++||.|.|..+
T Consensus 301 ~fD~tEEel~~~f-skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 301 PFDTTEEELKEHF-SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred CccccHHHHHHHH-HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 3888999999999 799999999999754 7999999999999999999999988 34 6789999999987
No 64
>KOG0146|consensus
Probab=98.46 E-value=4.5e-07 Score=72.43 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=61.7
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe---CCeeEEEEeccCccchh
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTDFRE 79 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f---~GR~I~v~~~~~~~f~~ 79 (130)
+|||+..| ..||.|+++.|.+...+.++|++||+|.+..+|..||..|||..- ..-.|.|.|.+.++-+.
T Consensus 33 e~dvrrlf-~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 33 EDDVRRLF-QPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HHHHHHHh-cccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHH
Confidence 68999999 799999999999987788999999999999999999999999754 44688999998776553
No 65
>KOG0147|consensus
Probab=98.43 E-value=4e-07 Score=77.84 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
||.-..++++..| ..||+|+.|.+..+. ++..+|++||+|.+.++|.+|+..|||-.++||.|.|...
T Consensus 287 HfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 287 HFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred ccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 4555667888889 599999999999986 7899999999999999999999999999999999998876
No 66
>KOG0131|consensus
Probab=98.39 E-value=4.7e-07 Score=68.53 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=55.7
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+-|++.| -+-|+|++++||++. +....|++||+|.++|+|.-|++.||+-.+-||+|++.-+.
T Consensus 24 ~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 24 ELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3456666 799999999999875 45679999999999999999999999999999999999875
No 67
>KOG0144|consensus
Probab=98.34 E-value=1.2e-06 Score=73.53 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=58.7
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEe---CCeeEEEEeccCcc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTD 76 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f---~GR~I~v~~~~~~~ 76 (130)
-+.||++.|+ +||.|.+|.|+++. ++.++|+.||+|.+.++|.+|+.+||+..- ..-+|.|.|++-++
T Consensus 47 sE~dlr~lFe-~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 47 SEKDLRELFE-KYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER 118 (510)
T ss_pred cHHHHHHHHH-HhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh
Confidence 3689999995 99999999999876 578999999999999999999999999764 33689999886544
No 68
>KOG0105|consensus
Probab=98.32 E-value=7.1e-07 Score=68.04 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=55.2
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..||.+.| .|||.|..|.+-.. ..+.+++||+|+++.+|..||..-||--|+|-.|.|+|..-
T Consensus 20 ekeieDlF-yKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 20 EKEIEDLF-YKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred hccHHHHH-hhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 36788888 79999999988754 34578999999999999999999999999999999999843
No 69
>KOG0109|consensus
Probab=98.30 E-value=1e-06 Score=70.83 Aligned_cols=56 Identities=29% Similarity=0.563 Sum_probs=52.5
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
++++..| .+||.|.++.|++ +++||.|.-.++|..|++.|||+.|+|++++|.++.
T Consensus 93 ~ElRa~f-e~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 93 QELRAKF-EKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHHhhhh-cccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 6899999 5999999999986 699999999999999999999999999999999983
No 70
>KOG4661|consensus
Probab=98.30 E-value=1.2e-06 Score=76.01 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=57.4
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.||+..| +|||+|+..+|+.|. ++-.+.++||++.+.++|.+||..|+-..+.||.|.|+-+
T Consensus 420 tDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 420 TDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 6899999 899999999999986 3556889999999999999999999999999999999977
No 71
>KOG0110|consensus
Probab=98.21 E-value=1.7e-06 Score=75.98 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
.|+.-..+|+..| +.||.|.+|.||... ..-.+|++||+|-++.+|..|+.+|.+..|-||.|..+|+..+.-.+
T Consensus 622 pFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 622 PFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred chHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHHH
Confidence 4788899999999 799999999999863 24468999999999999999999999999999999999996654333
No 72
>KOG0131|consensus
Probab=98.15 E-value=2.9e-06 Score=64.27 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=52.4
Q ss_pred HHHHHhhccCCceEE--EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 11 DVFVECEDKYGEIEE--MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 11 Di~~e~~skfG~I~~--v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-++..| ++||.|.+ =.+..+.++.++|++||.|.+.+.+.+|+..|||.++..|+|+++|+-.
T Consensus 112 ~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 112 LLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 366777 89999876 2223334578899999999999999999999999999999999999833
No 73
>KOG0146|consensus
Probab=98.10 E-value=2.7e-06 Score=68.02 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.+|...| -.||.|.+.+|..+. ++.++.++||.|.++.+|+.||.+|||-.++.+.|.|.+-..
T Consensus 300 aEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 300 AELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred HHHHHHh-ccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 4688888 699999999998764 678999999999999999999999999999999999988744
No 74
>KOG4212|consensus
Probab=98.07 E-value=9.5e-06 Score=68.55 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.||--.+||++.+..+-|+|+-|.+..+.+++++|++-|+|+++|.+++|++.||-..+.||+|.|.-.+-
T Consensus 53 pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 53 PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 36677788888887899999999999998899999999999999999999999999999999999986643
No 75
>KOG0153|consensus
Probab=97.85 E-value=4.9e-05 Score=62.40 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-CEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-RWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG-r~f~GR~I~v~~~~~ 74 (130)
..++.||++.| .+||+|..|.|... +|.|||+|.+.++|+.|...+-. -.++|+.|.+.|.+.
T Consensus 239 ~v~e~dIrdhF-yqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHF-YQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHH-hhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34678999999 69999999999864 58999999999999988776555 456999999998765
No 76
>KOG0109|consensus
Probab=97.85 E-value=4.5e-05 Score=61.57 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
-..+|+..| .+||+|+++.|++| ++||..++...|..|+..|||-.++|..|.|+-+
T Consensus 15 ~~~elr~lF-e~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 15 TEQELRSLF-EQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred chHHHHHHH-HhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 357899999 49999999999986 8899999999999999999999999999999987
No 77
>KOG2314|consensus
Probab=97.84 E-value=3.9e-05 Score=66.43 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCe-eEEEEe
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAEL 71 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR-~I~v~~ 71 (130)
-|..-|...| +++|+|..+.+|-+..+..+|++|++|.+..+|..|++.|||..++-. ...|..
T Consensus 76 klk~vl~kvf-sk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 76 KLKKVLTKVF-SKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHHHHH-HhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 3445566677 899999999999776667999999999999999999999999999764 444443
No 78
>KOG4209|consensus
Probab=97.78 E-value=2.6e-05 Score=61.00 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|....+++..+| ..+|.|..+.|+.+. .++++|++||+|.+.+.+..|++ |||..+.|+.+.+.+.-.
T Consensus 111 ~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 111 FLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred cccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 444556688999 699999999998765 46899999999999999999999 999999999999998733
No 79
>KOG4212|consensus
Probab=97.76 E-value=3.3e-05 Score=65.36 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
|+-..+-|++.| ..||.|+-+.|..+ ++++| -|+|.++++|+.|+..|||..++||.|.|.|.
T Consensus 546 ~dfTWqmlrDKf-re~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 546 FDFTWQMLRDKF-REIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccHHHHHHHH-Hhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 555678899999 69999999999665 55677 69999999999999999999999999999874
No 80
>KOG0226|consensus
Probab=97.75 E-value=2.5e-05 Score=61.94 Aligned_cols=62 Identities=21% Similarity=0.441 Sum_probs=51.1
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
+|+....+.+|-.-...+|.++. +++++|+.||.|.+..++..|++.|||++.+.|+|...-
T Consensus 204 d~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 204 DDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34443333677777778888765 689999999999999999999999999999999998653
No 81
>KOG0533|consensus
Probab=97.72 E-value=8.7e-05 Score=58.52 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
+|..+.+||++.| ..||.+..+.|.-+..+.+.|.+=|.|...++|.+|++.+||--++|++|.........
T Consensus 92 ~~~V~~~Dl~eLF-~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 92 PYGVIDADLKELF-AEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CcCcchHHHHHHH-HHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 3556779999999 69999999999988888999999999999999999999999999999999998884433
No 82
>KOG0132|consensus
Probab=97.61 E-value=0.00013 Score=65.03 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.+.||...| ..||.|.+|.+.-+ +|++||+.....+|.+|+.+|+...+.++.|++.|.
T Consensus 434 ~e~dL~~~f-eefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 434 TEQDLANLF-EEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred hHHHHHHHH-HhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 468999999 59999999999764 799999999999999999999999999999999988
No 83
>KOG1190|consensus
Probab=97.59 E-value=0.00035 Score=58.69 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=54.4
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+-|+..| +-||.|.+|+|..+. +-.+-|+|.+...|+-|+..|+|..+-|++|++.++.-+
T Consensus 313 d~LftlF-gvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 313 DVLFTLF-GVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred hHHHHHH-hhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5577788 899999999999875 368999999999999999999999999999999999433
No 84
>KOG4660|consensus
Probab=97.59 E-value=2.8e-05 Score=66.86 Aligned_cols=56 Identities=29% Similarity=0.461 Sum_probs=49.3
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEE
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v 69 (130)
+++|+..| +.||+|..|..-. +..|-+||+|.+..+|++|+++||++.+.|+.|.+
T Consensus 89 n~~L~~~f-~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 89 NDTLLRIF-GAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred HHHHHHHH-Hhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 57899999 7999999965543 45799999999999999999999999999998883
No 85
>KOG4454|consensus
Probab=97.55 E-value=0.0001 Score=57.49 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 2 QEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 2 q~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+..+...-|++..|++-.-|.|.+|.|+.......+ +|||.|.++-+..-|++.|||-.+.++++.+.+-.
T Consensus 15 ~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 15 QNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred HhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 344556667776666678999999999987655566 99999999999999999999999999999988763
No 86
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.54 E-value=0.00051 Score=50.31 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+++..+|.+.| +.||+|.=|++.. |..+|+|.+-++|.+|+. |+|..+.|+.|++.+-.
T Consensus 47 d~l~~~ll~~~-~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 47 DNLMDELLQKF-AQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHHHH-HCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHHHHH-HhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 45778999999 7999998887775 578999999999999886 99999999999999863
No 87
>KOG2068|consensus
Probab=97.48 E-value=4.4e-05 Score=62.24 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=65.2
Q ss_pred ccCCceEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccC-CCCC
Q psy17806 18 DKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMG-ECTR 92 (130)
Q Consensus 18 skfG~I~~v~v~~~~~----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~~~-~c~r 92 (130)
++||+|.+|.+..... ...---+||+|...++|..|+...+|-.++|+.+.+.+- .+.| |..|..+ .|++
T Consensus 102 gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g-ttky----cs~~l~~~~c~~ 176 (327)
T KOG2068|consen 102 GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG-TTKY----CSFYLRNDICQN 176 (327)
T ss_pred cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC-CCcc----hhHHhhhhcccC
Confidence 7899999999987541 111123999999999999999999999999999888875 5566 7667666 7887
Q ss_pred CCCcceeeecCCCH
Q psy17806 93 SGFCNFMHLKPISR 106 (130)
Q Consensus 93 g~~Cn~lh~~~~~~ 106 (130)
..|=|||-..--.
T Consensus 177 -~~cmylhe~~~~~ 189 (327)
T KOG2068|consen 177 -PDCMYLHEIGDQE 189 (327)
T ss_pred -ccccccccccccc
Confidence 5599999755433
No 88
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00051 Score=41.86 Aligned_cols=42 Identities=31% Similarity=0.601 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 54 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~ 54 (130)
+..++|+..| +.||+|.++.++.. .-.+||+|.+..+|++|+
T Consensus 12 ~~~~~vl~~F-~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 12 DLAEEVLEHF-ASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred hHHHHHHHHH-HhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 3457888899 69999999999843 348999999999999984
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.33 E-value=0.00039 Score=46.79 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccC-CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 8 FFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 8 ~~eDi~~e~~skf-G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+..-|+..+. .. |+|.+|. .|.+.|.|.+.+.|.+|.+-|+|...-|+.|.|.|.|..
T Consensus 19 I~~RL~qLsd-NCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 19 IKNRLRQLSD-NCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHHHH-TTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred HHHHHHHHhh-ccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 3344555552 44 4776662 378999999999999999999999999999999999764
No 90
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.29 E-value=0.00097 Score=45.93 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHhhccCCceEEEEEe-eC-------CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeE-EEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVC-DN-------LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV-YAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~-~~-------~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I-~v~~~ 72 (130)
....|..+| ++||.|++..-. ++ +......-+.|+|.++.+|.+|+. -||+.++|..| -|.+.
T Consensus 18 ~~~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 18 ASNQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp GHHHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 456789999 799999888611 11 001224589999999999999997 89999998654 46655
No 91
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.22 E-value=0.00017 Score=37.35 Aligned_cols=25 Identities=24% Similarity=0.743 Sum_probs=21.9
Q ss_pred chhhhhcccccCCCCCCCCcceeee
Q psy17806 77 FREACCRQYEMGECTRSGFCNFMHL 101 (130)
Q Consensus 77 f~~a~c~~~~~~~c~rg~~Cn~lh~ 101 (130)
++...|..|..|.|.+|+.|.|+|.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCc
Confidence 4456899999999999999999996
No 92
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.15 E-value=6.5e-05 Score=39.77 Aligned_cols=26 Identities=27% Similarity=0.690 Sum_probs=19.2
Q ss_pred chhhhhccccc-CCCCCCCCcceeeec
Q psy17806 77 FREACCRQYEM-GECTRSGFCNFMHLK 102 (130)
Q Consensus 77 f~~a~c~~~~~-~~c~rg~~Cn~lh~~ 102 (130)
|+...|..|.. |.|+.|+.|+|+|.+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 45678988887 899999999999963
No 93
>KOG0106|consensus
Probab=96.98 E-value=0.00048 Score=53.47 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
|..-..||..-| .+||+|.++.+- .|++||.|.+..+|..|+..|||+.|.|-.+.+++..
T Consensus 11 ~~~~~~d~E~~f-~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 11 YRARERDVERFF-KGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CccchhHHHHHH-hhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 334467888888 699999988775 3888999999999999999999999999888777763
No 94
>KOG4205|consensus
Probab=96.95 E-value=0.00053 Score=55.85 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
++...|.|++.| ++||+|.++.|.++. +++++|++||+|.+++....++. ..-..++||.|-+.-+
T Consensus 16 w~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 16 WETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred ccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 466788999999 799999999999865 58899999999999887776654 4455688888877665
No 95
>KOG0106|consensus
Probab=96.83 E-value=0.00069 Score=52.61 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=49.2
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+.||.+.| +++|++....+ ..+.++|+|++.++|..|+..|+|..+.|+.|++.....
T Consensus 113 ~qdl~d~~-~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 113 WQDLKDHF-RPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred HHHHhhhh-cccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence 48999999 79999944333 368999999999999999999999999999999955433
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.82 E-value=0.003 Score=43.65 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=37.5
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC-----EeCCeeEEEEec
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR-----WFGGRPVYAELS 72 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr-----~f~GR~I~v~~~ 72 (130)
.+||++.| ++||.|.=|.+... .-.+||+|.++++|+.|+..+.-. .+.+..++++..
T Consensus 15 re~iK~~f-~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 15 REDIKEAF-SQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp HHHHHHHT--SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HHHHHHHH-HhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 68999999 79998887777653 358999999999999999988755 556666666654
No 97
>KOG0151|consensus
Probab=96.45 E-value=0.0051 Score=54.89 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+.+...| +.||.|.+|+|.-+.+ ....-++||-|.+..+|.+|++.|+|.++.++++...|.
T Consensus 187 ~E~~ll~tf-GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 187 DENFLLRTF-GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cHHHHHHHh-cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 356788889 8999999999997653 345678999999999999999999999999999998877
No 98
>KOG0116|consensus
Probab=96.22 E-value=0.0056 Score=51.78 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
++....+|++.| .+||.|+...|.... .+.+..++||+|.+.+++..|+.+- =-.++||.+.|+--
T Consensus 298 ~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 298 PDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred CCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 345567788899 799999999998643 3444489999999999999999865 66789999999864
No 99
>KOG4210|consensus
Probab=95.91 E-value=0.0039 Score=50.19 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
|..-.+||+.++ ..+|.|..+.++... ++.+.|++||.|.+...+..|+.. ..+..+|+++.+++.+..
T Consensus 195 f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 195 FSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 444567788888 799999999999754 578899999999999999999988 999999999999987543
No 100
>KOG4205|consensus
Probab=95.87 E-value=0.0079 Score=49.08 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+..++++++.| .+||.|..+.+..+. ....+|++||.|.++++..+++. ..-+.|.|++|-|.-+-
T Consensus 108 ~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 108 DTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred CCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 44678999999 599999999998754 56789999999999887777764 88889999999998883
No 101
>KOG1456|consensus
Probab=95.87 E-value=0.056 Score=45.41 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=71.1
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc--------------
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT-------------- 75 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~-------------- 75 (130)
+-|+..| ..||.|++|+..+.. .|-+-|+..+..+.++|+..||+-.+.|..|.+.++-..
T Consensus 303 drlFNl~-ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgS 377 (494)
T KOG1456|consen 303 DRLFNLF-CLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGS 377 (494)
T ss_pred hhhhhhh-hhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCC
Confidence 5678888 699999999999854 489999999999999999999999999999998877322
Q ss_pred ----cchhhhhcccccC---CCCCC-CCcceeeecCCCHHHHHH
Q psy17806 76 ----DFREACCRQYEMG---ECTRS-GFCNFMHLKPISRELRRY 111 (130)
Q Consensus 76 ----~f~~a~c~~~~~~---~c~rg-~~Cn~lh~~~~~~~l~~~ 111 (130)
+|.+..-..|... .-+|= .--|.||..+.|-.+..+
T Consensus 378 pSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 378 PSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred cchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 2334433333322 11221 246788998876665555
No 102
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.85 E-value=0.092 Score=35.92 Aligned_cols=64 Identities=8% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeC----CeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFG----GRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~----GR~I~v~~~~ 73 (130)
.+.+.|-+.| .|...=+.+|.+. +....|+|||-|.+++.|.+-.+.++|+... .++..+.|+.
T Consensus 17 ~L~~~l~~~~---~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 17 MLIQILDEHF---KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred HHHHHHHHhc---cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 3444454444 4777888888764 4567899999999999999999999999774 4555566553
No 103
>KOG1548|consensus
Probab=95.82 E-value=0.029 Score=46.39 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=56.4
Q ss_pred HHHHHHHHhhccCCceE--------EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIE--------EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~--------~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+++.+.+ +++|-|. .|++.++..++++|-+-+.|-..++...|++.|++..|.|+.|+|+-+
T Consensus 147 T~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 147 TVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred cHHHHHHHH-HhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 456777777 7999886 467777777999999999999999999999999999999999999976
No 104
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.80 E-value=0.038 Score=41.91 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccCccc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln--Gr~f~GR~I~v~~~~~~~f 77 (130)
+..+.|+..| .+|+.+..+.+... -+.+-|.|.+.++|..|...|+ +..|.|..+.+.|......
T Consensus 7 ~~~~~l~~l~-~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELF-STYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHH-HTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hhHHHHHHHH-HhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 3456677777 79999999988764 4789999999999999999999 9999999999999854443
No 105
>KOG4285|consensus
Probab=95.67 E-value=0.025 Score=46.16 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~ 68 (130)
-|..+| +++|.|++.....+. -..+|+|.+.-+|.+|+. -||+.|+|-++.
T Consensus 212 ~vL~~F-~~cG~Vvkhv~~~ng-----NwMhirYssr~~A~KALs-kng~ii~g~vmi 262 (350)
T KOG4285|consen 212 IVLNLF-SRCGEVVKHVTPSNG-----NWMHIRYSSRTHAQKALS-KNGTIIDGDVMI 262 (350)
T ss_pred HHHHHH-HhhCeeeeeecCCCC-----ceEEEEecchhHHHHhhh-hcCeeeccceEE
Confidence 367889 799999998887542 379999999999999997 799999987654
No 106
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.51 E-value=0.046 Score=40.31 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=46.0
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..|...+ +.||+|.+|..+.. --|-|.|.+..+|=+|+.++..+ --|..++|.+-
T Consensus 105 ~sV~~~L-s~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s~-~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRL-SVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQSR-APGTMFQCSWQ 159 (166)
T ss_pred HHHHHHH-HhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcCC-CCCceEEeecc
Confidence 5677788 79999999999964 46889999999999999999885 56777777764
No 107
>KOG0120|consensus
Probab=95.44 E-value=0.012 Score=50.84 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=56.4
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~-~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...+.+.+ ..||.+....++.+.. +.++|++|.+|.+..-+..|+..|||..+++++++|..+
T Consensus 303 ~~q~~Ell-~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 303 EDQVKELL-DSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred HHHHHHHH-HhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34577777 6899999999998764 688999999999999999999999999999999999987
No 108
>KOG1365|consensus
Probab=95.28 E-value=0.015 Score=48.94 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhccCCceE---EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 4 HYDNFFEDVFVECEDKYGEIE---EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~---~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
.|+...|||..-| ..|..-+ .|++.-|..+++.|-+||+|.+.++|..|+..-+.....+|.|.+--++.++..++
T Consensus 289 Py~AtvEdIL~Fl-gdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~v 367 (508)
T KOG1365|consen 289 PYEATVEDILDFL-GDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEV 367 (508)
T ss_pred ChhhhHHHHHHHH-HHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHH
Confidence 3777888888777 5666432 47888888899999999999999999999999999988899888887777777765
Q ss_pred hh
Q psy17806 81 CC 82 (130)
Q Consensus 81 ~c 82 (130)
.-
T Consensus 368 L~ 369 (508)
T KOG1365|consen 368 LS 369 (508)
T ss_pred Hh
Confidence 43
No 109
>KOG1456|consensus
Probab=95.01 E-value=0.087 Score=44.32 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE-eCC-eeEEEEeccCcc
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW-FGG-RPVYAELSPVTD 76 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~-f~G-R~I~v~~~~~~~ 76 (130)
+-|+..| -..|+|..|.|.+.. --.+-|+|++.+.|++|..+|||-. |.| -+|.++|+..++
T Consensus 137 DVly~Ic-np~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 137 DVLYTIC-NPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hhhhhhc-CCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 4567788 799999999999752 2478999999999999999999975 455 588899885443
No 110
>KOG4307|consensus
Probab=94.94 E-value=0.06 Score=48.33 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhhccCCceE-EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 5 YDNFFEDVFVECEDKYGEIE-EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~-~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
|+.-.+||.+-| ..|-.+- +|.+-.+..+...|-+-|-|++.++|..|...|+++.+..|+|.+.+
T Consensus 877 f~v~l~dI~~FF-~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 877 FDVTLEDIVEFF-NDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred ccccHHHHHHHh-cccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 566789999888 7886654 44444566678899999999999999999999999999999998865
No 111
>KOG4211|consensus
Probab=94.83 E-value=0.059 Score=46.33 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
|....+||.+-| +.. .|+++.+++.. ++..|-|||+|.+++++.+|++ .+-..+..|-|-|--+
T Consensus 20 wsat~~ei~~Ff-~~~-~I~~~~~~r~~-Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 20 WSATEKEILDFF-SNC-GIENLEIPRRN-GRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred ccccHHHHHHHH-hcC-ceeEEEEeccC-CCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 456778999877 444 79998888753 6778999999999999999998 6666777777776555
No 112
>KOG1457|consensus
Probab=94.58 E-value=0.17 Score=39.99 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHhhccCCceEEEEEeeCC-C-CCceeEEEEEecCHHHHHHHHHHhCCCEeC---CeeEEEEec
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNL-G-DHLVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELS 72 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~-~-~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~---GR~I~v~~~ 72 (130)
+|+..|. .|---+...+-... . ...+-++||+|.+..+|.+|+++|||-.|| +..|+.+++
T Consensus 50 EiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 50 EIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred HHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 4555552 44333443333211 1 123468999999999999999999999996 578999988
No 113
>KOG1855|consensus
Probab=94.39 E-value=0.037 Score=46.95 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC---C---CC--------ceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL---G---DH--------LVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~---~---~~--------~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
|..+|.|.+.| +.+|.|..|.||.+. . +. .+-.++|+|+..+.|.+|...||-
T Consensus 242 Dh~~enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 242 DHSYENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred chHHHHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45678999999 899999999999982 1 11 244699999999999999998854
No 114
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.48 E-value=0.13 Score=32.89 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEE
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v 69 (130)
..+|++..+ .+|+-. +|.... .| .||.|.+..+|.+|....||+.+.+..|.+
T Consensus 13 ~v~d~K~~L-r~y~~~-~I~~d~------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 13 TVEDFKKRL-RKYRWD-RIRDDR------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred cHHHHHHHH-hcCCcc-eEEecC------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457899999 588643 333322 35 489999999999999999999998877765
No 115
>KOG4211|consensus
Probab=93.36 E-value=0.12 Score=44.50 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHhhccCCceEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 8 FFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~-v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
..+||.+-| +-.=-|.+ |.++.+...++.|-+||+|++.+.|++|+. =|.+.++-|-|-+--+...+++.+.
T Consensus 116 te~dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 116 TEEDIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred cHHHHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhc
Confidence 467888777 56644444 455666667789999999999999999987 5666678888888777666655543
No 116
>KOG1190|consensus
Probab=93.06 E-value=0.19 Score=42.65 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=53.2
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCcee-EEEEEecCHHHHHHHHHHhCCCEe-CC-eeEEEEeccCcc----chhhhh
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVG-NVYIKFRREEDAEKAVNDLNNRWF-GG-RPVYAELSPVTD----FREACC 82 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G-~vfV~F~~~e~A~~A~~~lnGr~f-~G-R~I~v~~~~~~~----f~~a~c 82 (130)
+=|...| ++||.|.+|.-.... .| .+-|+|.+.+.|+.|..+|+|+-+ +| -.|+++|+..++ |..-.-
T Consensus 165 DVLHqvF-S~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkS 239 (492)
T KOG1190|consen 165 DVLHQVF-SKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKS 239 (492)
T ss_pred HHHHHHH-hhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecccccc
Confidence 4566777 899999999888632 34 478999999999999999999954 55 478888885543 444444
Q ss_pred cccc
Q psy17806 83 RQYE 86 (130)
Q Consensus 83 ~~~~ 86 (130)
|.|.
T Consensus 240 RDyT 243 (492)
T KOG1190|consen 240 RDYT 243 (492)
T ss_pred cccc
Confidence 4443
No 117
>KOG1995|consensus
Probab=92.23 E-value=0.14 Score=42.43 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=48.9
Q ss_pred HHHHHHhhccCCceE--------EEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 10 EDVFVECEDKYGEIE--------EMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 10 eDi~~e~~skfG~I~--------~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.+|.+-| .+.|.|. .|+|-++. +..++|-+-|.|++...|+.|+..++++.|.|-+|.|.++
T Consensus 81 ~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a 151 (351)
T KOG1995|consen 81 NDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLA 151 (351)
T ss_pred HHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhh
Confidence 4555555 5666664 34444443 5678999999999999999999999999999999988877
No 118
>KOG0128|consensus
Probab=90.32 E-value=0.086 Score=47.95 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-..++++..+ +++|.+.++.++....+.++|.+||.|.++.+|.++...+++..+.-+-+.+..+++
T Consensus 747 ~gt~e~~k~l~-~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 747 QGTKEELKSLA-SKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCchHHHHhhc-cccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 33457788888 899999999999887789999999999999999999999999999888888888643
No 119
>KOG0112|consensus
Probab=89.33 E-value=0.34 Score=44.53 Aligned_cols=56 Identities=25% Similarity=0.442 Sum_probs=48.5
Q ss_pred HHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEec
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELS 72 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~ 72 (130)
-+-.+| ..||.|..|.+ +|..-++||.|++...|+.|+..|-|--|+| +.+.|.|+
T Consensus 471 ~l~r~f-d~fGpir~Idy-----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 471 RLNREF-DRFGPIRIIDY-----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HHHHHh-hccCcceeeec-----ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 356788 79999999877 4556799999999999999999999999977 67888887
No 120
>KOG2416|consensus
Probab=89.11 E-value=0.17 Score=44.68 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe---CCeeEEEEeccCccch
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTDFR 78 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f---~GR~I~v~~~~~~~f~ 78 (130)
-.|+.++...-|.|++.+|. +.+-..||.|.+.++|..-..+|||-.. +++-|.++|...+...
T Consensus 459 gQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 459 GQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred HHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 45777772255667777663 4577899999999999999999999755 7789999999766554
No 121
>KOG4574|consensus
Probab=88.89 E-value=0.29 Score=44.88 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=69.1
Q ss_pred HHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe--CCeeEEEEeccCccchhhhhcccccCC
Q psy17806 12 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSPVTDFREACCRQYEMGE 89 (130)
Q Consensus 12 i~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f--~GR~I~v~~~~~~~f~~a~c~~~~~~~ 89 (130)
|-..| ++||.|.+++..++. --+-|+|.+.+.|..|..+|.|+.. .|-|.+|.|+....+-+.--+
T Consensus 315 L~~l~-s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ln------ 382 (1007)
T KOG4574|consen 315 LATLC-SDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPPLN------ 382 (1007)
T ss_pred HHHHH-Hhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCCcC------
Confidence 45567 899999999998764 3678999999999999999999965 788999999866544332211
Q ss_pred CCCCCCcceeeecCCCHHHHHHHHhhc
Q psy17806 90 CTRSGFCNFMHLKPISRELRRYLYSRR 116 (130)
Q Consensus 90 c~rg~~Cn~lh~~~~~~~l~~~l~~~~ 116 (130)
--++=||-|-....+.|...||.-|
T Consensus 383 --~~g~nn~~~~~~l~e~ln~g~~n~q 407 (1007)
T KOG4574|consen 383 --LTGYNNFNHQPLLQEQLNTGLFNTQ 407 (1007)
T ss_pred --cccccCCCCCcchhhhhccccceec
Confidence 1145778788888888887777643
No 122
>KOG1457|consensus
Probab=88.22 E-value=1.1 Score=35.48 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f 62 (130)
+++++..| +.|--...++|--. ...-.+||.|++.+.|..||..|.|-.+
T Consensus 224 ed~l~~~~-~~~~gf~~l~~~~~---~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 224 EDELKQLL-SRYPGFHILKIRAR---GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHH-HhCCCceEEEEecC---CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46788888 78876666666532 1245899999999999999999998765
No 123
>KOG1040|consensus
Probab=88.11 E-value=0.16 Score=41.73 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=24.9
Q ss_pred ccchhhhhcccccCCCCCCCCcceeeec
Q psy17806 75 TDFREACCRQYEMGECTRSGFCNFMHLK 102 (130)
Q Consensus 75 ~~f~~a~c~~~~~~~c~rg~~Cn~lh~~ 102 (130)
......+|+-|..|-|.+|+.|+|||-.
T Consensus 73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 73 DSRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred ccCCceeehhhhhhhhhccCcCcchhhh
Confidence 4677889999999999999999999953
No 124
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.17 E-value=1.8 Score=27.53 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=25.4
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.|-+|.|..+ +.||+-.. +.|..++..|++..+.|++|.++.+
T Consensus 32 ~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4667777664 67777665 5789999999999999999999753
No 125
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.06 E-value=2.8 Score=29.21 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=34.8
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 64 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G 64 (130)
.|..++|.++... .+=-|-++|.+.++|..-....||+.|+.
T Consensus 40 ~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 5778888887532 34468899999999999999999999965
No 126
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=86.74 E-value=1.1 Score=29.40 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=27.5
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 64 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G 64 (130)
.|.++.++. +.+|++||+=.++.+...|++.+.+-+...
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 567777765 478999999999999999998887754433
No 127
>KOG2494|consensus
Probab=86.63 E-value=0.23 Score=40.80 Aligned_cols=26 Identities=27% Similarity=0.666 Sum_probs=22.0
Q ss_pred hhhhhcccccCCCCCCCC-cceeeecC
Q psy17806 78 REACCRQYEMGECTRSGF-CNFMHLKP 103 (130)
Q Consensus 78 ~~a~c~~~~~~~c~rg~~-Cn~lh~~~ 103 (130)
...+||+|..|.|.||+. |.|.|--.
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCCCC
Confidence 356899999999999997 99998643
No 128
>KOG2591|consensus
Probab=86.62 E-value=0.68 Score=40.79 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=40.6
Q ss_pred HHHHHHhhc-cCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC--EeCCeeEEEEecc
Q psy17806 10 EDVFVECED-KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPVYAELSP 73 (130)
Q Consensus 10 eDi~~e~~s-kfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr--~f~GR~I~v~~~~ 73 (130)
|+|+..|.+ ..-++.++...-| -+-||+|++..||++|.+.|.-+ .|.|++|.|.+-+
T Consensus 190 e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpImARIKa 250 (684)
T KOG2591|consen 190 EVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKA 250 (684)
T ss_pred HHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhh
Confidence 455555510 1235555555554 36899999999999999999875 5899998886543
No 129
>KOG3152|consensus
Probab=86.29 E-value=0.28 Score=39.24 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHhhccCCceEEEEEeeCCC---------CCc----eeEEEEEecCHHHHHHHHHHhCCCEeCCee
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLG---------DHL----VGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~---------~~~----~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~ 66 (130)
-|++.| +.||.|-.|.+..+.. +.. ---++|+|.+...|..+...|||..++|+.
T Consensus 90 rlReil-~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 90 RLREIL-SQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHH-HhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 477888 7999999999986531 111 123789999999999999999999999984
No 130
>KOG0115|consensus
Probab=84.36 E-value=0.98 Score=36.16 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC----CeeEEEE
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG----GRPVYAE 70 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~----GR~I~v~ 70 (130)
+.+..+| +.||.|+..+++.+..+.+.|-..|.|...-.|.+|....+-.-|. ++++-|+
T Consensus 46 dll~~~f-~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 46 DLLEQAF-RRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred HHHHHhh-hhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 4567778 7999999999988766778899999999999999999998666554 3455444
No 131
>KOG2135|consensus
Probab=84.19 E-value=0.75 Score=39.69 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..++-..| ++||+|..|-|-.+. --+-|+|.+..+|-.|.. .+|-.|++|.|.+-+-..
T Consensus 387 ~a~ln~hf-A~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 387 IADLNPHF-AQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred Hhhhhhhh-hhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 46888899 799999999997652 356699999999977765 899999999999998855
No 132
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.64 E-value=4 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=36.3
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
.||.+.| +.||.|.=-+|-+ .-+||...+.+.|..|++.++-
T Consensus 23 ~DI~qlF-spfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 23 SDIYQLF-SPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHC-CCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhHHHHh-ccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 6899999 8999997777754 4799999999999999998863
No 133
>KOG4206|consensus
Probab=82.87 E-value=4.5 Score=31.65 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=39.3
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEec
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 72 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~-GR~I~v~~~ 72 (130)
..|.--..|+.+.+. .|.+||+|.+...|..|...|.|-.+- .-++.+.++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 456666666666543 589999999999999999999998776 666666654
No 134
>KOG0128|consensus
Probab=82.24 E-value=0.26 Score=44.97 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=45.4
Q ss_pred HHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~ 68 (130)
.+|+...+ +.+|.|..+.|... ..+..+|.+||.|..+++|.+|+....+..++...+.
T Consensus 681 ~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~ 740 (881)
T KOG0128|consen 681 EEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVA 740 (881)
T ss_pred Cchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhh
Confidence 36888888 79999888877732 2467899999999999999999987666665543333
No 135
>KOG1365|consensus
Probab=81.41 E-value=3.1 Score=35.38 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhcc----CCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q psy17806 5 YDNFFEDVFVECEDK----YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 55 (130)
Q Consensus 5 ~d~~~eDi~~e~~sk----fG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~ 55 (130)
||....||.+-| .. -|-++.|..+....++..|-+||.|..+++|+.|+.
T Consensus 171 fdat~~dVv~FF-~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 171 FDATALDVVEFF-GPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred CCcchHHHHHhc-CCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 566677777655 31 235667777766668899999999999999999986
No 136
>KOG4213|consensus
Probab=81.21 E-value=4.3 Score=31.09 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCC--CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeE
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGD--HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~--~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I 67 (130)
-++..+||..-. + |++..|..-+.... ..+|-+||+|.+.+.|.++++.- +..+.-++|
T Consensus 119 td~ql~~l~qw~-~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~-e~~~~e~el 179 (205)
T KOG4213|consen 119 TDDQLDDLNQWA-S--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH-EEKGAETEL 179 (205)
T ss_pred CHHHHHHHHHHh-c--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh-hhhccchHH
Confidence 356777877665 4 89988888764332 46899999999999999877643 333333333
No 137
>KOG4676|consensus
Probab=75.44 E-value=4.8 Score=34.25 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=47.6
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+.|...| +..|+|.++.|..+.. +-..-.+||.|.+...+..|- .|.+..|=++.|.|--+
T Consensus 20 t~dqm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 20 TKDQMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred hHHHHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 346788888 8999999999987542 334568999999999888665 57777777777666655
No 138
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=73.75 E-value=1.8 Score=20.73 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=10.9
Q ss_pred CCCCCCCcceee
Q psy17806 89 ECTRSGFCNFMH 100 (130)
Q Consensus 89 ~c~rg~~Cn~lh 100 (130)
.|..|+.|.|.|
T Consensus 7 ~C~~~~~C~f~H 18 (19)
T PF14608_consen 7 NCTNGDNCPFSH 18 (19)
T ss_pred CCCCCCcCccCC
Confidence 599999999998
No 139
>KOG4307|consensus
Probab=73.57 E-value=1.1 Score=40.51 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCCceEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 9 FEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~-v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
..++-..| ++--.|++ |.|..-.++...+.+||.|..++++..|...-+-.+.+-|.|+|.-+...
T Consensus 448 ~~~~v~~f-~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 448 IVPPVNKF-MGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred ccchhhhh-hhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 45666777 46667777 77766667889999999999999999999988889999999999876443
No 140
>KOG2494|consensus
Probab=72.49 E-value=2.4 Score=34.98 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=26.1
Q ss_pred ccchhhhhcccccCCCCCCCCcceeeecCCCHHHHHHHHh
Q psy17806 75 TDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYS 114 (130)
Q Consensus 75 ~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~ 114 (130)
++=+-.-|-.+..+.|+| +.|.|+| ++.+|.+.|+-
T Consensus 67 ~~g~v~aC~Ds~kgrCsR-~nCkylH---pp~hlkdql~i 102 (331)
T KOG2494|consen 67 SNGRVIACFDSQKGRCSR-ENCKYLH---PPQHLKDQLKI 102 (331)
T ss_pred cCCeEEEEeccccCccCc-ccceecC---CChhhhhhhhh
Confidence 444445688999999999 5599998 45666666554
No 141
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=71.99 E-value=1.3 Score=35.22 Aligned_cols=39 Identities=23% Similarity=0.544 Sum_probs=29.3
Q ss_pred eeEEEEeccCccchhhhhcccccCCCCCCCCcceeeecCCCHH
Q psy17806 65 RPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 107 (130)
Q Consensus 65 R~I~v~~~~~~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~ 107 (130)
..|.|...| ...+|-.|..++|.+|.-|+|+|-+...+.
T Consensus 75 q~iragvdp----K~~vcalF~~~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 75 QVIRAGVDP----KTVVCALFLNKTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred hhhccccCc----hhHHHHHhccCccccCchhhhhcchHHHhh
Confidence 344555443 456799999999999999999999775544
No 142
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=70.59 E-value=17 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.7
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 23 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 23 I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
|.++.++.. ..|++||+....+++..+++.+.|
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 778888764 589999999988999999998877
No 143
>KOG1763|consensus
Probab=70.10 E-value=2 Score=35.13 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=24.9
Q ss_pred cchhhhhcccccCCCCCCCCcceeeecCCC
Q psy17806 76 DFREACCRQYEMGECTRSGFCNFMHLKPIS 105 (130)
Q Consensus 76 ~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~ 105 (130)
+-...+|--|..|.|.+|.-|+|.|-+.+-
T Consensus 89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~ 118 (343)
T KOG1763|consen 89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVE 118 (343)
T ss_pred CchHHHHHHHhccCCCCCCcccccchHHHh
Confidence 345668999999999999999999986543
No 144
>KOG4019|consensus
Probab=64.73 E-value=11 Score=28.91 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEeCCe-eEEEEecc
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAELSP 73 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR-~I~v~~~~ 73 (130)
++.++|-|-|.+++.|..|...++++.|.|. .+.+.|..
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 3578999999999999999999999999999 77776663
No 145
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.32 E-value=30 Score=21.77 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDN 31 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~ 31 (130)
-+.+..+|++.| +..|+|.-+.|-.-
T Consensus 4 re~i~~~iR~~f-s~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 4 REEITAEIRQFF-SQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHHHH-HhcCcEEEEEEccc
Confidence 367889999999 89999998888753
No 146
>KOG1999|consensus
Probab=60.64 E-value=18 Score=33.99 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=35.3
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
+|.+|... +|++|++||+-..+.....|++.|-+-+.+ +++.|-.
T Consensus 199 qI~Sv~a~----D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lVPi 243 (1024)
T KOG1999|consen 199 QIKSVFAK----DHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLVPI 243 (1024)
T ss_pred eEEEEEec----cccceeEEEEechhHHHHHHHhhhhhheec-cEEEEeh
Confidence 45555544 578999999999999999999999998777 6555543
No 147
>KOG0804|consensus
Probab=60.33 E-value=15 Score=31.74 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy17806 20 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 64 (130)
Q Consensus 20 fG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G 64 (130)
.-.|.+|.|.++.. ..+=-|-|+|.+.++|..-...+||+.|+.
T Consensus 99 ~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 99 IKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34688999998643 224468899999999999999999999976
No 148
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=60.14 E-value=3.4 Score=32.19 Aligned_cols=65 Identities=28% Similarity=0.505 Sum_probs=41.2
Q ss_pred EEEEEecCHHHHHHHHHHhCCC------EeCCe----------eEEEEeccCccchhhhhcccc-cCCCCCCCCcceeee
Q psy17806 39 NVYIKFRREEDAEKAVNDLNNR------WFGGR----------PVYAELSPVTDFREACCRQYE-MGECTRSGFCNFMHL 101 (130)
Q Consensus 39 ~vfV~F~~~e~A~~A~~~lnGr------~f~GR----------~I~v~~~~~~~f~~a~c~~~~-~~~c~rg~~Cn~lh~ 101 (130)
-+.+-|...+=|.+|...+-.. .+.|+ |-.+.--.+-+|...+|..|- .|-|.-|+.|.|||.
T Consensus 85 E~lL~~~~~~LA~ka~~~~~~~~Ne~~~~m~~k~~~~~K~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 85 EDLLNFERKELAEKAKKRRPSDDNELVLNMSGKNKRLTKQINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred HHHhCCCCHHHHHHHhhcCCccchHHHHhccccchhhhhhccCCceeeccceeecCcccccchhhcccccCCchhhhhhh
Confidence 4456788888888887643221 11221 111222233467778999886 558999999999998
Q ss_pred cC
Q psy17806 102 KP 103 (130)
Q Consensus 102 ~~ 103 (130)
+.
T Consensus 165 R~ 166 (259)
T COG5152 165 RS 166 (259)
T ss_pred hh
Confidence 54
No 149
>KOG1677|consensus
Probab=60.11 E-value=4.8 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.670 Sum_probs=28.1
Q ss_pred eccCccchhhhhccccc-CCCCCCCCcceeeecC
Q psy17806 71 LSPVTDFREACCRQYEM-GECTRSGFCNFMHLKP 103 (130)
Q Consensus 71 ~~~~~~f~~a~c~~~~~-~~c~rg~~Cn~lh~~~ 103 (130)
.....+|..-.|.-|.. |.|..|..|-|.|...
T Consensus 169 ~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 169 VGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred hcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 33556799999999987 8999999999999865
No 150
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=57.82 E-value=14 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.177 Sum_probs=24.6
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeE
Q psy17806 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67 (130)
Q Consensus 38 G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I 67 (130)
.+.+|.|.+..+|.+|-+.|...-+.++.|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 367899999999999999998876655544
No 151
>KOG1595|consensus
Probab=56.91 E-value=5.9 Score=34.68 Aligned_cols=25 Identities=24% Similarity=0.773 Sum_probs=21.0
Q ss_pred chhhhhcccccCCCCCCCCcceeee
Q psy17806 77 FREACCRQYEMGECTRSGFCNFMHL 101 (130)
Q Consensus 77 f~~a~c~~~~~~~c~rg~~Cn~lh~ 101 (130)
|+..-|=.+-.|.|.+|+.|-|.|-
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 5566787788899999999999985
No 152
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.82 E-value=14 Score=29.37 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=25.2
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 40 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 40 vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|||+|++..+|..|.+.+....- +.+.+..+|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC
Confidence 69999999999999997766643 4446666644
No 153
>KOG2193|consensus
Probab=55.10 E-value=12 Score=32.36 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=48.0
Q ss_pred eeEEEEEecCHHHHHHHHHHhCCCE-eCCeeEEEEeccCccchhhhhcccccCCCCCCCCcceeeecCCCHHHHHHHHhh
Q psy17806 37 VGNVYIKFRREEDAEKAVNDLNNRW-FGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR 115 (130)
Q Consensus 37 ~G~vfV~F~~~e~A~~A~~~lnGr~-f~GR~I~v~~~~~~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~~ 115 (130)
.|++||.+.+..-|.+|++.++|.. +.|+++.++.+-...-+.. =+.+..+++.|.+++..+
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr-----------------k~Qirnippql~wevld~ 99 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR-----------------KIQIRNIPPQLQWEVLDS 99 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh-----------------hhhHhcCCHHHHHHHHHH
Confidence 4899999999999999999999984 7899999988733222111 157788888888887654
No 154
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=53.40 E-value=30 Score=23.59 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 58 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln 58 (130)
.+..-|.||+..+ .++|-. ...|.||+..+.+.+|..-+.++|
T Consensus 20 ~~~~aY~Dir~~L-~~~gF~-----------~tQGSVYl~~~~i~~~~~~~~~q~ 62 (96)
T COG3309 20 NYRQAYDDIRRVL-ERHGFE-----------NTQGSVYLNDEGINQAAGTLAAQN 62 (96)
T ss_pred hHHHHHHHHHHHH-HHcCcc-----------cccceEEEccchHHHHHHHHHHHH
Confidence 3456789999999 599864 246999999998887765554443
No 155
>KOG1813|consensus
Probab=53.16 E-value=4.7 Score=32.97 Aligned_cols=28 Identities=29% Similarity=0.825 Sum_probs=23.2
Q ss_pred ccchhhhhcccc-cCCCCCCCCcceeeec
Q psy17806 75 TDFREACCRQYE-MGECTRSGFCNFMHLK 102 (130)
Q Consensus 75 ~~f~~a~c~~~~-~~~c~rg~~Cn~lh~~ 102 (130)
-+|..-+|..|. .|-|..|+.|.|||-+
T Consensus 182 ~d~qpDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 182 IDYQPDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred eecCchhhhhhHhhCcccccchhhhhhhh
Confidence 357777999886 4589999999999974
No 156
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=53.04 E-value=27 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=31.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCCEe-CC----eeEEEEeccCccch
Q psy17806 34 DHLVGNVYIKFRREEDAEKAVNDLNNRWF-GG----RPVYAELSPVTDFR 78 (130)
Q Consensus 34 ~~~~G~vfV~F~~~e~A~~A~~~lnGr~f-~G----R~I~v~~~~~~~f~ 78 (130)
......+||.|.+.+++..-...++|..| +. -+-.|+|+|-..+-
T Consensus 52 ~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 52 PPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp TS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS----
T ss_pred CCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhccc
Confidence 34567999999999999999999999877 22 36678888765553
No 157
>KOG0112|consensus
Probab=53.03 E-value=3.9 Score=37.91 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+|+..| ..||+|.+|.|-.+.-+...-++||.|.+.+.|-.|...|.|..+..-.+.+-+.
T Consensus 386 eseiR~af-~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 386 ESEIRPAF-DESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhh-hhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 35788899 7999999999988754555679999999999999999999999886666666655
No 158
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=52.21 E-value=48 Score=20.74 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHhhccC---CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q psy17806 10 EDVFVECEDKY---GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 57 (130)
Q Consensus 10 eDi~~e~~skf---G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l 57 (130)
+||+.-| ..| .....|.-..+. .+=|.|.+.+.|.+|+.+|
T Consensus 19 ~dI~~y~-~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 19 DDIKAYF-SEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHH-HHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 6777777 577 123344444442 4558899999999999875
No 159
>KOG4660|consensus
Probab=51.12 E-value=17 Score=31.95 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCE---eCCe-eEEEEec
Q psy17806 20 YGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRW---FGGR-PVYAELS 72 (130)
Q Consensus 20 fG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~---f~GR-~I~v~~~ 72 (130)
.|.=.=+.++.+- +....|+|||-|.+++++..+.++.||.. |.+. +....|+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA 470 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA 470 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence 3333334455432 23468999999999999999999999974 4443 3335554
No 160
>KOG0105|consensus
Probab=50.20 E-value=39 Score=26.25 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=44.1
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC--CeeEEEEec
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG--GRPVYAELS 72 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~--GR~I~v~~~ 72 (130)
.+||++.+ -+-|.|-=..|.++ |..-|+|...|+-.-|++.|+...|. |-...+...
T Consensus 129 WQDLKDHm-ReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 129 WQDLKDHM-REAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred hHHHHHHH-HhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 47888888 48888876666665 68889999999999999999998884 444444444
No 161
>KOG4849|consensus
Probab=49.07 E-value=20 Score=30.35 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=51.3
Q ss_pred HHHHHHhhccCC--ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 10 EDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 10 eDi~~e~~skfG--~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+||.+.+. .-| .+.+|+...|. ++.++|++.|...+..+..+-++.|--+.+.|.--+|.-+..
T Consensus 95 ~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 95 ADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK 161 (498)
T ss_pred HHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence 56666663 555 57788888775 578999999999999999999999999999998777665544
No 162
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=48.70 E-value=9 Score=31.08 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=27.6
Q ss_pred cchhhhhcccccCCCCCCCCcceeeecCCCHH
Q psy17806 76 DFREACCRQYEMGECTRSGFCNFMHLKPISRE 107 (130)
Q Consensus 76 ~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~ 107 (130)
..+...|+-|+.+.|..+..|.|||--.+...
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s 132 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS 132 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccc
Confidence 57778999999999999999999998776553
No 163
>PRK13817 ribosome-binding factor A; Provisional
Probab=48.24 E-value=29 Score=24.28 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=33.2
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC-----EeCCeeEEEEeccCccch
Q psy17806 20 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR-----WFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 20 fG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr-----~f~GR~I~v~~~~~~~f~ 78 (130)
+-.|.+|.|..+ -....|||.+-..++...++++|+.. ..=|+.|...+.|+-.|.
T Consensus 31 ~vtVt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~PeL~F~ 91 (119)
T PRK13817 31 KISLTAVSISPD---LKQAKVFYSLLENQNEKEVQKALNKATGYLRHLLAQATVLRYVPKLEFV 91 (119)
T ss_pred ceEEeEEEECCC---CCEEEEEEEECCCccHHHHHHHHHHhHHHHHHHHHHhCCCeECCEEEEE
Confidence 456666766654 44678888876544444444445442 234556667777776663
No 164
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.59 E-value=1.1e+02 Score=27.18 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCEe------CCeeEEEEeccC---
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWF------GGRPVYAELSPV--- 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln--Gr~f------~GR~I~v~~~~~--- 74 (130)
.+|-+.|-+.+ ..-+-|.+|.+..+ |++.+......-+......+. +..+ .|+.|.++|++.
T Consensus 57 ~eiA~~i~~~l-~~~~~~~~veiaGp------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt 129 (577)
T COG0018 57 REIAEEIAEKL-DTDEIIEKVEIAGP------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT 129 (577)
T ss_pred HHHHHHHHHhc-cccCcEeEEEEcCC------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC
Confidence 35678888888 47677889988764 788888877665665556665 4544 678999999943
Q ss_pred ccchhhhhc
Q psy17806 75 TDFREACCR 83 (130)
Q Consensus 75 ~~f~~a~c~ 83 (130)
..+.-+.+|
T Consensus 130 kplHiGHlR 138 (577)
T COG0018 130 GPLHIGHLR 138 (577)
T ss_pred CCcccchhh
Confidence 445544444
No 165
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=45.76 E-value=26 Score=26.64 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=39.0
Q ss_pred EEecCHH---HHHHHHHHhCCCEeCCeeEEEEeccCccchhhhh-c-ccccCCCCCCCCcceeeecCC
Q psy17806 42 IKFRREE---DAEKAVNDLNNRWFGGRPVYAELSPVTDFREACC-R-QYEMGECTRSGFCNFMHLKPI 104 (130)
Q Consensus 42 V~F~~~e---~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c-~-~~~~~~c~rg~~Cn~lh~~~~ 104 (130)
|-+.+.+ .|.+++..|......+++|.+++.|...|..|-- . .|.. +-+.+++|-+-+..++
T Consensus 104 If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~-k~p~~~yc~~~~~~~~ 170 (186)
T PRK13014 104 IFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLK-KNPTHPYIVYNDLPKG 170 (186)
T ss_pred EEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHH-hCCCCCccEEEeChhh
Confidence 3344444 4555666665543337889999999999988754 2 2332 3366688988665543
No 166
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.05 E-value=73 Score=19.63 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 58 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln 58 (130)
..++.+.+ .++| +....+.--. .=+.+|+-+.+.+.|.++.+.|.
T Consensus 36 i~~~~~~~-~~~G-a~~~~~sGsG---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAA-EENG-ALGAKMSGSG---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHH-HHTT-ESEEEEETTS---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCC-CCceecCCCC---CCCeEEEEECCHHHHHHHHHHHH
Confidence 35677777 5898 6666666431 23799999999999998888774
No 167
>KOG0153|consensus
Probab=44.60 E-value=11 Score=31.60 Aligned_cols=30 Identities=33% Similarity=0.675 Sum_probs=26.0
Q ss_pred hhhhcccccCCCCCCCCcceeeecCCCHHH
Q psy17806 79 EACCRQYEMGECTRSGFCNFMHLKPISREL 108 (130)
Q Consensus 79 ~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l 108 (130)
.-+|.-|..|+|.||..|-|-|=++++..|
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp~d~~L 190 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKPPDDPL 190 (377)
T ss_pred CccccceeeccccccccccccccCCCCcch
Confidence 347899999999999999999999977656
No 168
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=44.04 E-value=19 Score=25.24 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecC-----HHHHHHHHHHhCC--CEeCCeeEEEEeccCccch
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-----EEDAEKAVNDLNN--RWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~-----~e~A~~A~~~lnG--r~f~GR~I~v~~~~~~~f~ 78 (130)
+|++.- -+.+.|.+|.|..+ -....|||++-. .+.+.+|++...| +.+-|+.+...+.|+-.|.
T Consensus 25 eikDpr-l~~~~Vt~V~vS~D---l~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~~PeL~F~ 95 (118)
T COG0858 25 EIKDPR-LGLVTVTDVEVSKD---LSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRKTPELHFV 95 (118)
T ss_pred HccCCC-cCceEEEEEEEcCC---CceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEeCCeEEEE
Confidence 444444 25566788888764 346789999633 2334455555555 3467788888888887764
No 169
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=43.67 E-value=39 Score=21.34 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHhhccCC-ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 10 EDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 10 eDi~~e~~skfG-~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
++|.+++ ...| +|..|+-+... +....--.||+.+...+ ..+.++=+.+.|..|.++--
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEEL-KDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHH-HHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecC
Confidence 5677888 4777 68777777654 33445678888877654 34456667778888888754
No 170
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=40.67 E-value=39 Score=21.75 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHhhccCC-ceEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 10 EDVFVECEDKYG-EIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 10 eDi~~e~~skfG-~I~~v~v~~~~~-~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+.|.++| .++| .|..|+.+.+.. ..+.--.+|+-....+-.. .|+=+.+.|+.|+|+--.
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEAL-KDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHH-HHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 4678888 5888 688888887653 3344567777766543332 577778889998888543
No 171
>KOG2891|consensus
Probab=40.07 E-value=4.5 Score=33.21 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHhhccCCceEEEEEee--CC----CCCc-----ee---------EEEEEecCHHHHHHHHHHhCCCEe
Q psy17806 10 EDVFVECEDKYGEIEEMNVCD--NL----GDHL-----VG---------NVYIKFRREEDAEKAVNDLNNRWF 62 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~--~~----~~~~-----~G---------~vfV~F~~~e~A~~A~~~lnGr~f 62 (130)
+-++..| ..||.|..|.||. +. +++. .| -+||+|...-.-..|+.+|.|+.+
T Consensus 176 ~rlr~a~-eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 176 DRLRKAF-EAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHH-HHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 3467778 5999999888874 21 1111 22 257888888888888888888754
No 172
>KOG2185|consensus
Probab=39.63 E-value=20 Score=30.71 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=35.9
Q ss_pred eeEEEEeccCccchhhhhcccccCCCCCCCCcceeeecCCCH
Q psy17806 65 RPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISR 106 (130)
Q Consensus 65 R~I~v~~~~~~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~ 106 (130)
..+.|-|..++.-.+..|.=|.++.|.=+..|.|.|=.-++=
T Consensus 126 arvRVlfl~PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~l 167 (486)
T KOG2185|consen 126 ARVRVLFLTPTHESMKPCKFFLEGRCRFGENCRFSHGLDVPL 167 (486)
T ss_pred cceEEEeecCcchhhccchHhhccccccCcccccccCcccch
Confidence 457788888888889999999999999999999999766553
No 173
>PF14268 YoaP: YoaP-like
Probab=39.59 E-value=18 Score=21.22 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=29.3
Q ss_pred EEEecCHHHHHHHHHHhCCC--EeCCeeEEEEeccCccch
Q psy17806 41 YIKFRREEDAEKAVNDLNNR--WFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 41 fV~F~~~e~A~~A~~~lnGr--~f~GR~I~v~~~~~~~f~ 78 (130)
.|..++.|+|+.|---.+.- +|+|+-|+.++.++..|.
T Consensus 4 ~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils~~kf~ 43 (44)
T PF14268_consen 4 LIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILSEKKFE 43 (44)
T ss_pred EEEeccHHHHhcCCCceeEEEEEECCEEEEeeccChhhhc
Confidence 46788888888877666654 679999999998777664
No 174
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.41 E-value=95 Score=20.51 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=32.0
Q ss_pred HHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q psy17806 10 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 57 (130)
Q Consensus 10 eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l 57 (130)
.+|+..++.-|| +|.+|...... ...-.|||++....+|......+
T Consensus 35 ~eIK~AvE~lf~VkV~~VnT~~~~--~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 35 PDIKRAVEELFDVKVEKVNTLITP--KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHHHHHHHHHhCCceEEEEeEEcC--CCcEEEEEEeCCCCcHHHHHHhh
Confidence 466666654566 68888777643 22358999999999888776544
No 175
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=36.63 E-value=88 Score=27.56 Aligned_cols=57 Identities=18% Similarity=0.025 Sum_probs=40.4
Q ss_pred hccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 17 ~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
++.+|-|+++.+--..-......+.+.|.+.++|.+|+..+-.. .-.|-.+++.+..
T Consensus 291 eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~--g~~psa~ElmD~~ 347 (555)
T PLN02805 291 EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLS--GIQVSRVELLDEV 347 (555)
T ss_pred CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhC--CCCcEEEEEECHH
Confidence 46799999999864333344667889999999999998876532 2246667776553
No 176
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=35.27 E-value=36 Score=24.10 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=26.3
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 23 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 23 I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
|..+.++.. ..|++||+.....+...++..+.|
T Consensus 28 ~~~~~vp~~----fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 28 VYSILAPES----LKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred EEEEEccCC----CCcEEEEEEECcHHHHHHHhCCCC
Confidence 556666653 689999999988888888888877
No 177
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=35.10 E-value=83 Score=28.31 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 36 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 36 ~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.|-+ +.|+++++|.+|+.. |..-.|-.|.+.|-.
T Consensus 447 ~~GpA-~VFdsee~a~~ai~~--g~I~~gdVvVIRyeG 481 (615)
T PRK12448 447 FTGPA-RVFESQDDAVEAILG--GKVKAGDVVVIRYEG 481 (615)
T ss_pred EEEeE-EEECCHHHHHHHHhc--CCCCCCeEEEEeCCC
Confidence 46777 779999999999865 888889999998883
No 178
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=33.61 E-value=59 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=18.8
Q ss_pred eEEEEEecCHHHHHHHHHHhCC
Q psy17806 38 GNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 38 G~vfV~F~~~e~A~~A~~~lnG 59 (130)
|++||+....++...++..+.|
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 9999999987777888888777
No 179
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=33.60 E-value=1.2e+02 Score=20.05 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=23.6
Q ss_pred ceEEEEEeeCCCCCceeEEEEEec-CHHHHHHHHHHhCC
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFR-REEDAEKAVNDLNN 59 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~-~~e~A~~A~~~lnG 59 (130)
.|..|.+.. +-....||+... +.++-..+++.|+.
T Consensus 30 tIt~V~ls~---Dl~~a~Vy~~~~~~~~~~~~~~~~L~~ 65 (104)
T PF02033_consen 30 TITRVELSP---DLSHAKVYVSILGDEEEQEEVLEALNK 65 (104)
T ss_dssp EEEEEEECT---TSSEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred EEEEEEECC---CCCEEEEEEEEecCchhHHHHHHHHHH
Confidence 455666655 455789999986 66666666666664
No 180
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=33.29 E-value=92 Score=21.52 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=29.5
Q ss_pred CceEEEEEeeCCCCCceeEEEEEecC----HHHHHHHHHHhCCC--EeCCeeEEEEeccCccc
Q psy17806 21 GEIEEMNVCDNLGDHLVGNVYIKFRR----EEDAEKAVNDLNNR--WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 21 G~I~~v~v~~~~~~~~~G~vfV~F~~----~e~A~~A~~~lnGr--~f~GR~I~v~~~~~~~f 77 (130)
-.|.+|.+.. +-....|||..-. .+.+.++++...|. ..=++.|...+.|+-.|
T Consensus 35 vtIt~V~vS~---Dl~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~l~lr~~P~L~F 94 (120)
T PRK00521 35 VTVTDVEVSP---DLAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKRLRLRYVPELRF 94 (120)
T ss_pred eEEEEEEECC---CCCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhhCCCccCCEEEE
Confidence 3455555554 4457788998854 23444444444442 23445555666666555
No 181
>KOG2193|consensus
Probab=33.13 E-value=4.4 Score=34.91 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=51.6
Q ss_pred HHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 11 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 11 Di~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
++..-+...||.|+.+.+... +.-...+-|+|.+.+.+..|+..|||..+...-+.+.|.|-+.-.
T Consensus 95 evld~Ll~qyg~ve~~eqvnt--~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 95 EVLDSLLAQYGTVENCEQVNT--DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred HHHHHHHhccCCHhHhhhhcc--chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 444444479999999887532 223456678999999999999999999999999999999765443
No 182
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=33.12 E-value=91 Score=21.18 Aligned_cols=73 Identities=15% Similarity=0.305 Sum_probs=42.5
Q ss_pred ceEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccCCCCCCCCcceee
Q psy17806 22 EIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMH 100 (130)
Q Consensus 22 ~I~~v~v~~-~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~~~~c~rg~~Cn~lh 100 (130)
+|++|+|-. +..++++|+|-|+|.+ .=+..-++.+.|. .| +.|.+-+.. -+.|.+--.
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd-~fvI~~ikVieg~--~G--lFVaMPs~k--------------~~~g~y~DI-- 60 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN-EFVVHDIRVIEGN--NG--LFIAMPSKR--------------TPDGEFRDI-- 60 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC-EEEEeeeEEEECC--CC--eEEECcCcC--------------CCCCcEEEE--
Confidence 578888875 3457899999999998 3344445555554 23 444432111 122333333
Q ss_pred ecCCCHHHHHHHHhh
Q psy17806 101 LKPISRELRRYLYSR 115 (130)
Q Consensus 101 ~~~~~~~l~~~l~~~ 115 (130)
+.+++.+++..|-..
T Consensus 61 ~~Pit~e~Re~i~~a 75 (94)
T PRK13259 61 AHPINSDTREKIQDA 75 (94)
T ss_pred EccCCHHHHHHHHHH
Confidence 246788888777653
No 183
>KOG1492|consensus
Probab=32.58 E-value=19 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=15.7
Q ss_pred hhhhhcccccCCCCCCCCcceeeecC
Q psy17806 78 REACCRQYEMGECTRSGFCNFMHLKP 103 (130)
Q Consensus 78 ~~a~c~~~~~~~c~rg~~Cn~lh~~~ 103 (130)
+..+|-.|..|.|++...||..|-..
T Consensus 232 rkticpkflngrcnkaedcnlsheld 257 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELD 257 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccC
Confidence 34456666666666666666666543
No 184
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]
Probab=32.51 E-value=22 Score=27.81 Aligned_cols=18 Identities=33% Similarity=0.877 Sum_probs=15.2
Q ss_pred cCCCCCCCCcceeeecCCC
Q psy17806 87 MGECTRSGFCNFMHLKPIS 105 (130)
Q Consensus 87 ~~~c~rg~~Cn~lh~~~~~ 105 (130)
-|.||| -.||.+|+.++.
T Consensus 121 fG~CPR-v~Cn~~~vLPvG 138 (242)
T COG5041 121 FGACPR-VYCNGQQVLPVG 138 (242)
T ss_pred cCCCCc-ccccCcceeccc
Confidence 469999 899999998864
No 185
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=31.30 E-value=18 Score=23.43 Aligned_cols=11 Identities=45% Similarity=1.192 Sum_probs=5.0
Q ss_pred CCCCCCCccee
Q psy17806 89 ECTRSGFCNFM 99 (130)
Q Consensus 89 ~c~rg~~Cn~l 99 (130)
.|+||-.|||.
T Consensus 58 dC~rG~~CN~f 68 (73)
T PF06373_consen 58 DCPRGTSCNFF 68 (73)
T ss_dssp B--TT--B-TT
T ss_pred CCCCCCchhhh
Confidence 79999999984
No 186
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=31.08 E-value=1.1e+02 Score=26.43 Aligned_cols=56 Identities=21% Similarity=0.110 Sum_probs=40.7
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+.+|-|+++.+---+.......+++.|.+.++|..|+..+-.. .-.|..+++.+..
T Consensus 215 GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~--~~~p~~~el~d~~ 270 (499)
T PRK11230 215 GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA--GIIPGGLEMMDNL 270 (499)
T ss_pred CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc--CCCcEEEEeeCHH
Confidence 3688999998876444455678889999999999999887532 2236667776543
No 187
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=30.96 E-value=1.2e+02 Score=20.83 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=30.7
Q ss_pred ceEEEEEeeCCCCCceeEEEEEec-CHHHHHHHHHHhCCC-----EeCCeeEEEEeccCccc
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFR-REEDAEKAVNDLNNR-----WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~-~~e~A~~A~~~lnGr-----~f~GR~I~v~~~~~~~f 77 (130)
.|.+|.+.. +-....|||.+- +.++...+++.|+.. ..=|+.|...+.|+-.|
T Consensus 34 tVt~V~lS~---Dl~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~l~lR~~P~L~F 92 (114)
T TIGR00082 34 TVTKVEVSK---DLQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQAMRLRKTPELHF 92 (114)
T ss_pred EEeEEEECC---CCCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhhCCceECCEEEE
Confidence 445555554 445788999887 333335555555542 23455666667777655
No 188
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=28.88 E-value=1.3e+02 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=29.9
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
.-.|.+ +.|+++++|.+|+. +|+.-.|-.|.+.|..
T Consensus 381 ~~~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeG 416 (535)
T TIGR00110 381 KFEGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEG 416 (535)
T ss_pred EEEEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCC
Confidence 357777 77999999999985 5888889999998873
No 189
>PRK06545 prephenate dehydrogenase; Validated
Probab=28.25 E-value=1.3e+02 Score=24.48 Aligned_cols=49 Identities=29% Similarity=0.457 Sum_probs=35.4
Q ss_pred HHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe
Q psy17806 12 VFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 62 (130)
Q Consensus 12 i~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f 62 (130)
|...+ +..| .|++|.|..+. +...|.+-+.|.+.+++.+|...|...|.
T Consensus 307 ~~~~~-~~~~i~i~~~~i~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 307 VTAIL-GEEGISIENLRILEAR-EDIHGVLQISFKNEEDRERAKALLEEFWT 356 (359)
T ss_pred HHHHH-HHcCCCeecceeeecc-CCcCceEEEEeCCHHHHHHHHHHHHhcCc
Confidence 33344 3444 47777776553 45679999999999999999998877653
No 190
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=28.04 E-value=1.4e+02 Score=24.89 Aligned_cols=56 Identities=20% Similarity=0.058 Sum_probs=39.9
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+.+|-|+++.+--.+.......+.+.|.+.++|.+|+..+-.. .-.|-.+++.+..
T Consensus 158 GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~p~a~el~d~~ 213 (413)
T TIGR00387 158 GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA--GIIPAGMEFLDNL 213 (413)
T ss_pred ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc--CCCcEEEEccCHH
Confidence 3578899988876444455677789999999999999777542 2246667776543
No 191
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=86 Score=21.80 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=26.8
Q ss_pred cCCceEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHh
Q psy17806 19 KYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDL 57 (130)
Q Consensus 19 kfG~I~~v~v~~-~~~~~~~G~vfV~F~~~e~A~~A~~~l 57 (130)
.||++.+..-.. ...+...-+.+++|.+.+.+.+|...|
T Consensus 47 P~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 47 PYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHh
Confidence 466666654442 223567789999999999887776654
No 192
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=27.91 E-value=1.3e+02 Score=18.98 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcc--CCceEEEEEeeCCCCCceeEEEEEecCH
Q psy17806 7 NFFEDVFVECEDK--YGEIEEMNVCDNLGDHLVGNVYIKFRRE 47 (130)
Q Consensus 7 ~~~eDi~~e~~sk--fG~I~~v~v~~~~~~~~~G~vfV~F~~~ 47 (130)
-+-++|.+.+ .+ -|.|...++.+.. ..|.+ |+|.+-
T Consensus 15 Ri~~~l~~~l-~~~~~g~I~~fKmtDG~---giG~v-v~~~ng 52 (64)
T PF11061_consen 15 RIPKELVDKL-GKNPIGTIKGFKMTDGS---GIGVV-VEFSNG 52 (64)
T ss_pred hccHHHHHHh-ccCCcEEEEEEEEecCC---cEEEE-EEecCC
Confidence 3446777777 57 9999999998842 34444 777763
No 193
>KOG1492|consensus
Probab=27.80 E-value=44 Score=26.66 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=29.9
Q ss_pred HHHHHhCCCEeCCeeEEEEeccCcc-chhhhhcccccCCCCCCCCcceeeec
Q psy17806 52 KAVNDLNNRWFGGRPVYAELSPVTD-FREACCRQYEMGECTRSGFCNFMHLK 102 (130)
Q Consensus 52 ~A~~~lnGr~f~GR~I~v~~~~~~~-f~~a~c~~~~~~~c~rg~~Cn~lh~~ 102 (130)
-|-+.||||-- +.-.+.++.+.+ -+-.-|+-|..|+|+. ..|.|+|+.
T Consensus 235 icpkflngrcn--kaedcnlsheldprripacryfllgkcnn-pncryvhih 283 (377)
T KOG1492|consen 235 ICPKFLNGRCN--KAEDCNLSHELDPRRIPACRYFLLGKCNN-PNCRYVHIH 283 (377)
T ss_pred cChHHhcCccC--chhcCCcccccCccccchhhhhhhccCCC-CCceEEEEe
Confidence 45566666632 222344443332 3445788899999986 789999983
No 194
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=27.42 E-value=2e+02 Score=19.45 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr 60 (130)
.-+++.+++.-.. ..=|.|.+|.|.-+.=+...| -+...+..++.+-++.|+..
T Consensus 6 ~~~~~~~EL~~IV-d~Gg~V~DV~veHp~YG~i~~--~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 6 TPDEIEDELEIIV-DNGGRVLDVIVEHPVYGEITG--NLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp -GGGHHHHHHHHH-HTT-EEEEEEEEETTTEEEEE--EEEE-SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHH-HCCCEEEEEEEeCCCCcEEEE--EEecCCHHHHHHHHHHHhcc
Confidence 4567888888887 466789999999875444444 45668999999999988765
No 195
>KOG2187|consensus
Probab=26.94 E-value=32 Score=30.32 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=34.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 34 DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 34 ~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.+..+++|+.|++.+.+.+|+..++|-.+.+..+.+...
T Consensus 60 ~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 60 PKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 356789999999999999999999999999988887765
No 196
>PRK13818 ribosome-binding factor A; Provisional
Probab=26.72 E-value=1.5e+02 Score=20.71 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=33.2
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEecC--HH---HHHHHHHHhCCC--EeCCeeEEEEeccCccc
Q psy17806 19 KYGEIEEMNVCDNLGDHLVGNVYIKFRR--EE---DAEKAVNDLNNR--WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 19 kfG~I~~v~v~~~~~~~~~G~vfV~F~~--~e---~A~~A~~~lnGr--~f~GR~I~v~~~~~~~f 77 (130)
.+-.|.+|.|..+ -....|||.+-. .. .+.++++...|. ..=++.|...+.|+-.|
T Consensus 30 ~~vtVt~V~lS~D---l~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~lR~~P~L~F 92 (121)
T PRK13818 30 SDVTITAVECTND---LSYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLTVYKVPELIF 92 (121)
T ss_pred CceEEeEEEECCC---CCEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCCCeECCEEEE
Confidence 3456666666654 456789999864 22 344455555552 23455666777777665
No 197
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=26.25 E-value=38 Score=17.13 Aligned_cols=13 Identities=31% Similarity=0.840 Sum_probs=10.4
Q ss_pred CCCCCCCcceeeec
Q psy17806 89 ECTRSGFCNFMHLK 102 (130)
Q Consensus 89 ~c~rg~~Cn~lh~~ 102 (130)
.|+. ..|.|.|++
T Consensus 11 ~Cnd-~~C~~QHfr 23 (23)
T PF10650_consen 11 VCND-PDCEFQHFR 23 (23)
T ss_pred eeCC-CCCCccccC
Confidence 7875 789999974
No 198
>KOG1134|consensus
Probab=25.56 E-value=87 Score=28.66 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=34.7
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
...|.+||+|.+.-+|+.|.+...++...+-.+.....|.+-+...
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~n 348 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDN 348 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecc
Confidence 3468999999999999999998777777766666555565554433
No 199
>KOG0129|consensus
Probab=25.40 E-value=1.5e+02 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHH
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVND 56 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~ 56 (130)
++|-..++.-||.|.=+-|..+. -.-++|-+=|+|.+..+=.+||.+
T Consensus 385 ~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 385 EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45555664479999999999874 356789999999999988888763
No 200
>KOG1039|consensus
Probab=24.69 E-value=37 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=23.4
Q ss_pred hhhcccccCCCCCCCCcceeeecCC
Q psy17806 80 ACCRQYEMGECTRSGFCNFMHLKPI 104 (130)
Q Consensus 80 a~c~~~~~~~c~rg~~Cn~lh~~~~ 104 (130)
.+|+-|..|.|.-|..|-|.|++..
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 6899999999999999999999885
No 201
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=24.26 E-value=2.9e+02 Score=20.23 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 2 QEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 2 q~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
++.+|.+...|...+ .. .+.++.+-. ...-+.|-|+|.-+-+|..-++.|--
T Consensus 16 ~~~ld~i~~~l~~L~-~~--~~~~l~~~~---~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 16 QYKLDDIKNWLASLY-KP--RISDLKVRK---VEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred HHHHHHHHHHHHHHH-hc--ccccceeec---cccCceEEEEEechHHHHHHHHHHhh
Confidence 456677777777666 23 233343333 23457899999999999998888866
No 202
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=89 Score=24.21 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 49 DAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 49 ~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
-+..|++.|||+.++|-.|.....|+.-
T Consensus 18 Ps~e~vk~L~~~~i~g~~V~~~~lP~~f 45 (207)
T COG2039 18 PSWEAVKELNGRIIGGAEVKGRILPVVF 45 (207)
T ss_pred hHHHHHHhcCcccccCceEEEEEcCccH
Confidence 5788999999999999999999888753
No 203
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.56 E-value=1.9e+02 Score=19.03 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.4
Q ss_pred ceEEEEEeeCC-CCCceeEEEEEecC
Q psy17806 22 EIEEMNVCDNL-GDHLVGNVYIKFRR 46 (130)
Q Consensus 22 ~I~~v~v~~~~-~~~~~G~vfV~F~~ 46 (130)
+|.+|+|-.-. .++++|+|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887633 38899999999987
No 204
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.42 E-value=2.3e+02 Score=18.81 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHH
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 56 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ 56 (130)
.|++|.+.|++.| ++..-..|+..++ | -+|+-.+.++-..|+..
T Consensus 23 ~f~dL~~kIrdkf--~~~~~~~iKykDE------G-D~iti~sq~DLd~Ai~~ 66 (86)
T cd06408 23 GFADFEDKIRDKF--GFKRRLKIKMKDD------G-DMITMGDQDDLDMAIDT 66 (86)
T ss_pred CHHHHHHHHHHHh--CCCCceEEEEEcC------C-CCccccCHHHHHHHHHH
Confidence 5899999999999 5776666666654 2 45777777766666554
No 205
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=23.05 E-value=1.4e+02 Score=18.60 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=16.8
Q ss_pred eEEEEEecCHHHHHHHHHHhC
Q psy17806 38 GNVYIKFRREEDAEKAVNDLN 58 (130)
Q Consensus 38 G~vfV~F~~~e~A~~A~~~ln 58 (130)
..+-|.|.+++.|..+++.|.
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhC
Confidence 567899999999999888774
No 206
>KOG0862|consensus
Probab=22.90 E-value=57 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCH
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 47 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~ 47 (130)
+.|||..||...||+-..= .-++-++||+|.+-
T Consensus 87 YLedL~~EF~~~~~~~~~~-------~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 87 YLEDLAQEFDKSYGKNIIQ-------PASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHHHhcccccCC-------ccCCCeeEEehhHH
Confidence 4689999998777753222 23456999999875
No 207
>KOG1040|consensus
Probab=22.61 E-value=35 Score=28.17 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=24.0
Q ss_pred EEEeccCccchhh-hhcc-cccCCCCCCCCcceeeecC
Q psy17806 68 YAELSPVTDFREA-CCRQ-YEMGECTRSGFCNFMHLKP 103 (130)
Q Consensus 68 ~v~~~~~~~f~~a-~c~~-~~~~~c~rg~~Cn~lh~~~ 103 (130)
.++|+.+.++..+ .|.- +..+.|.+|..|.|+|.-.
T Consensus 93 ~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 93 QCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 3555544344444 5644 4456999999999999975
No 208
>KOG1677|consensus
Probab=22.40 E-value=40 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=27.2
Q ss_pred cCccchhhhhcccccC-CCCC-CCCcceeeecCCCH
Q psy17806 73 PVTDFREACCRQYEMG-ECTR-SGFCNFMHLKPISR 106 (130)
Q Consensus 73 ~~~~f~~a~c~~~~~~-~c~r-g~~Cn~lh~~~~~~ 106 (130)
....|....|..|... .|.. |..|.|-|..+-.+
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 4567888999888754 8998 99999988876554
No 209
>PF15628 RRM_DME: RRM in Demeter
Probab=22.32 E-value=66 Score=22.25 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=7.9
Q ss_pred hCCCEeCCeeEEEEe
Q psy17806 57 LNNRWFGGRPVYAEL 71 (130)
Q Consensus 57 lnGr~f~GR~I~v~~ 71 (130)
|||.||.-..|.++.
T Consensus 17 LnGTYFQ~nEVFaD~ 31 (103)
T PF15628_consen 17 LNGTYFQVNEVFADH 31 (103)
T ss_pred cCceEEEEEEEEecc
Confidence 555555555555444
No 210
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.20 E-value=2.3e+02 Score=25.36 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=36.3
Q ss_pred CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 21 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 21 G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|-|.++..+.+....-.|.+ +.|+++++|.+|+ ++|..=.|-.|.+.|...
T Consensus 399 gaViK~sav~~~~~~~eGpA-~VFds~e~~~~ai--~~g~l~~g~VvVIRyeGP 449 (575)
T COG0129 399 GAVIKTSAVDPEIRVFEGPA-RVFDSQEDAIKAI--LDGELKAGDVVVIRYEGP 449 (575)
T ss_pred CceEEeeccCchhceEEeee-EEECCHHHHHHHH--hcCCCCCCeEEEEeccCC
Confidence 44555555554333356777 7799999999997 578877888888888744
No 211
>KOG2480|consensus
Probab=22.04 E-value=2e+02 Score=25.70 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHhh--ccCCceEEEEEeeCCCCCceeEEEEEecCH-----------HHHHHHHHHhCCCEeCCeeEEEE
Q psy17806 7 NFFEDVFVECE--DKYGEIEEMNVCDNLGDHLVGNVYIKFRRE-----------EDAEKAVNDLNNRWFGGRPVYAE 70 (130)
Q Consensus 7 ~~~eDi~~e~~--skfG~I~~v~v~~~~~~~~~G~vfV~F~~~-----------e~A~~A~~~lnGr~f~GR~I~v~ 70 (130)
+-++.|+.+|- |+|+++.+|...-.. -++||+|... ..++.+++.|.-.+-+...|-++
T Consensus 324 E~~~~lk~~FnstSRFaRLq~i~~~iaG-----~~lyiRF~~~TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iS 395 (602)
T KOG2480|consen 324 ENQEVLKKAFNSTSRFARLQSIHTTIAG-----RNLYIRFCTSTGDAMGMNMISKGVENALRFLSEEFPDMQVISIS 395 (602)
T ss_pred hhHHHHHHHhcccchhhhhheeeEEeec-----ceeEEEEEeccccchhhhhHHHHHHHHHHHHHHhCCCceEEEec
Confidence 34455555542 789999999998653 2899999875 35668888888877666665544
No 212
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=21.89 E-value=1.5e+02 Score=25.40 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=25.7
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~ 68 (130)
...|.| |.|.+.++|..+++.|-.+-..|..|.
T Consensus 177 ~~~G~V-v~Y~~~~~a~~~i~~~~~~g~~GyiI~ 209 (439)
T PF07999_consen 177 GEAGRV-VFYKDQEAAVSVINEMSSRGVKGYIIY 209 (439)
T ss_pred CcCceE-EEecCchHHHHHHHHHHhhCceEEEEE
Confidence 345677 888899999999999987766666654
No 213
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=21.52 E-value=72 Score=19.19 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=12.7
Q ss_pred EEecCHHHHHHHHHHh
Q psy17806 42 IKFRREEDAEKAVNDL 57 (130)
Q Consensus 42 V~F~~~e~A~~A~~~l 57 (130)
-.|.+.++|.+|...|
T Consensus 38 ~~Y~t~~eA~~Aa~~L 53 (53)
T PF14882_consen 38 KFYPTYEEASKAAIKL 53 (53)
T ss_pred cccCCHHHHHHHHHhC
Confidence 3578899999998765
No 214
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.02 E-value=2.5e+02 Score=18.17 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=31.7
Q ss_pred HHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q psy17806 9 FEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 57 (130)
Q Consensus 9 ~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l 57 (130)
..+|+..++.-|| +|.+|....-. ...-.+||++...+.|......+
T Consensus 27 K~eIK~avE~lf~VkV~~Vnt~~~~--~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 27 KGDIKRAVEKLFDVKVEKVNTLITP--RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred HHHHHHHHHHHhCCceEEEEeEEcC--CCceEEEEEECCCCcHHHHHHhh
Confidence 3567777754466 67777776542 12348999999988888776544
No 215
>KOG3218|consensus
Probab=20.09 E-value=2.3e+02 Score=22.03 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred hhccCCc----eEEEEEeeCCCCCceeEEEEEecCHH-HHHHHHHHhC
Q psy17806 16 CEDKYGE----IEEMNVCDNLGDHLVGNVYIKFRREE-DAEKAVNDLN 58 (130)
Q Consensus 16 ~~skfG~----I~~v~v~~~~~~~~~G~vfV~F~~~e-~A~~A~~~ln 58 (130)
|.+.||. ...+.+..+..+.+.+.+||.|-+.. --.++++.+-
T Consensus 42 F~~~yg~~~p~r~~L~~~~~~~~dp~~ki~V~F~~~~kvgvk~~k~~~ 89 (208)
T KOG3218|consen 42 FKARYGDKMPDREDLRILAAHRDDPTDKIYVFFPEEPKVGVKTMKTYV 89 (208)
T ss_pred HHHHhccCCcchhhEEEEeccCCCCcCcEEEEeCCCCcccHHHHHHHH
Confidence 3345664 57778887777778899999998765 3344444443
No 216
>KOG1763|consensus
Probab=20.09 E-value=61 Score=26.72 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=19.2
Q ss_pred CCCCCC-CcceeeecCCCHHHHH
Q psy17806 89 ECTRSG-FCNFMHLKPISRELRR 110 (130)
Q Consensus 89 ~c~rg~-~Cn~lh~~~~~~~l~~ 110 (130)
.||.|+ -|-|-|.+++.--|.+
T Consensus 176 ~CPnGg~~C~YrHaLP~GyVLk~ 198 (343)
T KOG1763|consen 176 ECPNGGDKCIYRHALPEGYVLKR 198 (343)
T ss_pred ECCCCCCeeeeeecCCcchhhhh
Confidence 899998 8999999998877763
No 217
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=20.00 E-value=2.7e+02 Score=24.89 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=27.3
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEe--CCeeEEEEec
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELS 72 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f--~GR~I~v~~~ 72 (130)
+-.|.+ +.|+++++|.+|+ ++|..= .|-.|.+.|.
T Consensus 399 ~~~G~A-~VF~see~a~~ai--~~g~i~i~~gdVvVIRye 435 (571)
T PRK06131 399 KHEGRA-VVFEGYEDYKARI--DDPDLDVDEDTVLVLRNA 435 (571)
T ss_pred EEEeee-EEECCHHHHHHHH--hCCCcCCCCCeEEEEeCC
Confidence 357777 7799999999997 567743 7778888876
Done!