Query psy17806
Match_columns 130
No_of_seqs 205 out of 1343
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:33:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v4m_A Splicing factor U2AF 65 99.9 9.6E-22 3.3E-26 134.5 8.0 77 3-80 23-102 (105)
2 1jmt_A Splicing factor U2AF 35 99.8 5.6E-21 1.9E-25 130.4 8.9 72 1-73 32-104 (104)
3 3s6e_A RNA-binding protein 39; 99.8 6.2E-21 2.1E-25 132.7 8.4 78 3-84 25-102 (114)
4 3ue2_A Poly(U)-binding-splicin 99.8 5.3E-21 1.8E-25 133.7 7.1 75 5-80 35-114 (118)
5 2pe8_A Splicing factor 45; RRM 99.8 4E-20 1.4E-24 126.5 8.0 76 5-81 23-100 (105)
6 3dxb_A Thioredoxin N-terminall 99.7 2.4E-18 8E-23 129.5 6.9 75 5-80 139-218 (222)
7 2dit_A HIV TAT specific factor 99.7 1.3E-16 4.4E-21 109.0 8.9 72 3-78 34-106 (112)
8 4fxv_A ELAV-like protein 1; RN 99.6 4.7E-15 1.6E-19 99.6 9.9 67 6-73 30-97 (99)
9 3s8s_A Histone-lysine N-methyl 99.6 7.7E-15 2.6E-19 100.5 10.0 70 6-76 17-87 (110)
10 3ns6_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 101.4 6.5 68 4-72 21-90 (100)
11 4f25_A Polyadenylate-binding p 99.6 1.8E-14 6.2E-19 98.7 9.0 66 7-74 17-82 (115)
12 2nlw_A Eukaryotic translation 99.6 8.7E-15 3E-19 98.7 7.0 71 5-77 31-103 (105)
13 3md1_A Nuclear and cytoplasmic 99.5 5.2E-14 1.8E-18 90.0 10.2 67 7-74 13-80 (83)
14 2ywk_A Putative RNA-binding pr 99.5 3.4E-14 1.2E-18 93.2 9.1 66 7-73 28-93 (95)
15 2krb_A Eukaryotic translation 99.5 5.8E-15 2E-19 94.9 5.0 63 5-69 17-80 (81)
16 3bs9_A Nucleolysin TIA-1 isofo 99.5 6.2E-14 2.1E-18 90.4 9.7 66 7-73 18-84 (87)
17 3ulh_A THO complex subunit 4; 99.5 6.2E-14 2.1E-18 93.9 9.7 66 7-73 41-106 (107)
18 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.1E-14 1.1E-18 91.5 7.8 64 8-72 20-84 (85)
19 2do4_A Squamous cell carcinoma 99.5 7.2E-14 2.5E-18 92.7 9.7 67 7-74 29-95 (100)
20 2cqc_A Arginine/serine-rich sp 99.5 9.9E-14 3.4E-18 90.8 9.5 65 8-73 28-93 (95)
21 1whw_A Hypothetical protein ri 99.5 7.4E-14 2.5E-18 92.3 8.4 68 7-75 20-88 (99)
22 2do0_A HnRNP M, heterogeneous 99.5 1.7E-13 5.9E-18 92.7 10.3 67 7-74 27-93 (114)
23 2x1f_A MRNA 3'-END-processing 99.5 1.2E-13 4.2E-18 91.1 9.2 69 7-76 14-83 (96)
24 2d9p_A Polyadenylate-binding p 99.5 9.7E-14 3.3E-18 92.5 8.7 66 7-74 27-92 (103)
25 2e5h_A Zinc finger CCHC-type a 99.5 9.5E-14 3.2E-18 90.9 8.3 66 6-72 27-93 (94)
26 2cq0_A Eukaryotic translation 99.5 1.3E-13 4.4E-18 91.9 9.1 67 7-74 27-94 (103)
27 2dnh_A Bruno-like 5, RNA bindi 99.5 1.5E-13 5.2E-18 91.7 9.3 67 7-74 27-96 (105)
28 2dnz_A Probable RNA-binding pr 99.5 1.2E-13 4E-18 90.6 8.5 67 7-74 17-84 (95)
29 2dgo_A Cytotoxic granule-assoc 99.5 2.3E-13 7.9E-18 92.3 10.0 67 7-74 27-94 (115)
30 2cpz_A CUG triplet repeat RNA- 99.5 1.8E-13 6.2E-18 93.0 9.1 66 8-74 38-104 (115)
31 2cpi_A CCR4-NOT transcription 99.5 1.5E-13 5.1E-18 93.4 8.6 66 8-74 28-100 (111)
32 1x5t_A Splicing factor 3B subu 99.5 8E-14 2.7E-18 91.6 7.0 67 7-74 17-85 (96)
33 2fy1_A RNA-binding motif prote 99.5 9.9E-14 3.4E-18 95.3 7.7 71 6-77 18-88 (116)
34 2a3j_A U1 small nuclear ribonu 99.5 8E-14 2.7E-18 98.1 7.2 68 6-76 44-111 (127)
35 2la6_A RNA-binding protein FUS 99.5 1.7E-13 5.9E-18 90.8 8.4 65 7-72 25-98 (99)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.1E-13 3.6E-18 92.1 7.3 66 8-74 25-91 (102)
37 1x5u_A Splicing factor 3B subu 99.5 1.2E-13 4.2E-18 92.2 7.7 67 7-74 27-94 (105)
38 2cq3_A RNA-binding protein 9; 99.5 3.4E-13 1.2E-17 89.9 9.8 66 7-74 27-92 (103)
39 2lkz_A RNA-binding protein 5; 99.5 6.2E-14 2.1E-18 94.0 5.9 67 6-73 20-93 (95)
40 3p5t_L Cleavage and polyadenyl 99.5 5.5E-14 1.9E-18 92.0 5.6 68 6-74 12-82 (90)
41 2wbr_A GW182, gawky, LD47780P; 99.5 7E-14 2.4E-18 93.5 6.0 64 7-76 19-82 (89)
42 1p27_B RNA-binding protein 8A; 99.5 2.4E-13 8.1E-18 90.9 8.7 66 7-73 35-101 (106)
43 2cph_A RNA binding motif prote 99.5 1.9E-13 6.6E-18 91.4 8.1 68 7-75 27-97 (107)
44 2kt5_A RNA and export factor-b 99.5 1.9E-13 6.4E-18 94.2 8.3 66 8-74 48-113 (124)
45 2lxi_A RNA-binding protein 10; 99.5 3.4E-14 1.1E-18 93.8 4.2 67 6-73 12-81 (91)
46 2cpf_A RNA binding motif prote 99.5 2.8E-13 9.5E-18 89.4 8.3 67 7-74 17-87 (98)
47 2dnm_A SRP46 splicing factor; 99.5 1.7E-13 5.7E-18 91.4 7.2 67 7-74 25-92 (103)
48 3ucg_A Polyadenylate-binding p 99.5 3.9E-13 1.3E-17 87.0 8.8 65 8-74 19-84 (89)
49 2dgx_A KIAA0430 protein; RRM d 99.5 2.5E-13 8.5E-18 90.0 7.9 63 9-74 23-89 (96)
50 2jrs_A RNA-binding protein 39; 99.4 2.6E-13 8.9E-18 92.1 8.0 66 8-74 39-105 (108)
51 1s79_A Lupus LA protein; RRM, 99.4 1.1E-13 3.7E-18 93.8 6.1 66 6-73 22-87 (103)
52 2dgv_A HnRNP M, heterogeneous 99.4 2.9E-13 9.9E-18 88.2 7.9 66 7-74 20-85 (92)
53 1oo0_B CG8781-PA, drosophila Y 99.4 3.8E-13 1.3E-17 90.6 8.8 66 7-73 38-104 (110)
54 4a8x_A RNA-binding protein wit 99.4 2.1E-13 7.4E-18 87.9 7.2 67 7-74 16-84 (88)
55 2cqi_A Nucleolysin TIAR; RNA r 99.4 4E-13 1.4E-17 89.5 8.7 66 7-74 27-92 (103)
56 1p1t_A Cleavage stimulation fa 99.4 1.9E-13 6.4E-18 91.0 7.0 69 7-76 20-89 (104)
57 1x5s_A Cold-inducible RNA-bind 99.4 1.5E-13 5.2E-18 91.3 6.4 68 6-74 23-91 (102)
58 2dhg_A TRNA selenocysteine ass 99.4 2E-13 6.9E-18 91.0 6.8 67 7-74 21-89 (104)
59 2dgs_A DAZ-associated protein 99.4 5.4E-13 1.9E-17 88.3 8.7 66 7-74 22-88 (99)
60 2khc_A Testis-specific RNP-typ 99.4 3E-13 1E-17 92.2 7.5 65 7-72 52-117 (118)
61 3md3_A Nuclear and cytoplasmic 99.4 9.7E-13 3.3E-17 92.4 10.1 65 8-73 100-165 (166)
62 1whx_A Hypothetical protein ri 99.4 1.5E-13 5.1E-18 93.7 5.6 66 6-77 21-86 (111)
63 2mss_A Protein (musashi1); RNA 99.4 1.4E-13 4.7E-18 86.8 5.0 63 8-72 12-75 (75)
64 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 3.7E-13 1.3E-17 93.6 7.7 65 7-72 75-140 (140)
65 1x4a_A Splicing factor, argini 99.4 6.3E-13 2.1E-17 89.5 8.5 65 7-74 34-98 (109)
66 1x5o_A RNA binding motif, sing 99.4 7.8E-13 2.7E-17 89.6 8.8 66 7-73 37-110 (114)
67 2kxn_B Transformer-2 protein h 99.4 4.5E-13 1.5E-17 93.9 7.8 67 7-74 58-125 (129)
68 2err_A Ataxin-2-binding protei 99.4 3.1E-13 1.1E-17 91.7 6.8 66 7-74 41-106 (109)
69 3ex7_B RNA-binding protein 8A; 99.4 3.9E-13 1.3E-17 92.6 7.3 66 7-73 34-100 (126)
70 2dgw_A Probable RNA-binding pr 99.4 1E-12 3.5E-17 85.7 9.0 66 6-74 21-86 (91)
71 2cpe_A RNA-binding protein EWS 99.4 5.3E-13 1.8E-17 90.3 7.8 67 7-74 27-102 (113)
72 2ek1_A RNA-binding protein 12; 99.4 2.7E-13 9.2E-18 88.9 6.2 67 6-73 26-93 (95)
73 1x4h_A RNA-binding protein 28; 99.4 7.7E-13 2.6E-17 88.9 8.4 68 6-74 26-100 (111)
74 1u6f_A Tcubp1, RNA-binding pro 99.4 6.2E-13 2.1E-17 93.0 8.1 69 7-76 54-123 (139)
75 2g4b_A Splicing factor U2AF 65 99.4 9.8E-13 3.4E-17 93.4 9.2 64 8-72 107-171 (172)
76 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.4E-12 4.9E-17 93.0 10.0 68 6-74 50-118 (156)
77 2div_A TRNA selenocysteine ass 99.4 6.3E-13 2.2E-17 87.8 7.6 67 7-74 21-93 (99)
78 2db1_A Heterogeneous nuclear r 99.4 2.1E-13 7.3E-18 93.9 5.1 76 5-82 27-105 (118)
79 2jwn_A Embryonic polyadenylate 99.4 1.3E-12 4.3E-17 89.7 9.0 65 7-73 48-113 (124)
80 2cq4_A RNA binding motif prote 99.4 8.3E-13 2.8E-17 89.6 7.9 66 7-74 37-103 (114)
81 1wi8_A EIF-4B, eukaryotic tran 99.4 1E-12 3.5E-17 87.8 8.2 65 7-74 27-93 (104)
82 2dgp_A Bruno-like 4, RNA bindi 99.4 4.8E-13 1.6E-17 89.4 6.6 67 7-74 25-95 (106)
83 3n9u_C Cleavage and polyadenyl 99.4 7.4E-13 2.5E-17 95.8 8.0 68 6-74 66-136 (156)
84 1nu4_A U1A RNA binding domain; 99.4 4.3E-13 1.5E-17 88.2 6.2 64 9-75 26-89 (97)
85 2dnn_A RNA-binding protein 12; 99.4 3.4E-13 1.2E-17 92.5 5.8 74 5-81 26-99 (109)
86 1wg5_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 90.5 5.7 73 5-79 25-98 (104)
87 2cq2_A Hypothetical protein LO 99.4 3.3E-13 1.1E-17 93.8 5.6 67 5-77 37-108 (114)
88 2cqp_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 88.6 5.7 67 6-73 26-93 (98)
89 2dng_A Eukaryotic translation 99.4 2.1E-12 7.3E-17 86.1 9.3 66 6-74 26-92 (103)
90 2cqd_A RNA-binding region cont 99.4 9.2E-13 3.1E-17 89.6 7.6 66 7-74 29-95 (116)
91 2kn4_A Immunoglobulin G-bindin 99.4 7.1E-13 2.4E-17 94.4 7.2 68 6-74 81-149 (158)
92 1x5p_A Negative elongation fac 99.4 1.7E-12 5.8E-17 85.8 8.6 63 7-75 25-87 (97)
93 3s7r_A Heterogeneous nuclear r 99.4 2.6E-12 8.9E-17 82.9 9.3 64 7-72 23-87 (87)
94 3lqv_A PRE-mRNA branch site pr 99.4 9.6E-13 3.3E-17 89.2 7.2 65 7-74 20-84 (115)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.4E-12 8.4E-17 92.9 9.7 66 7-73 84-150 (165)
96 1b7f_A Protein (SXL-lethal pro 99.4 2.1E-12 7.3E-17 91.2 8.9 65 7-72 101-168 (168)
97 3nmr_A Cugbp ELAV-like family 99.4 2.1E-12 7.3E-17 91.5 8.8 66 7-73 107-175 (175)
98 3r27_A HnRNP L, heterogeneous 99.4 8.7E-13 3E-17 89.7 6.5 63 6-74 32-96 (100)
99 2j76_E EIF-4B, EIF4B, eukaryot 99.4 5.5E-13 1.9E-17 88.9 5.3 64 8-74 32-97 (100)
100 2qfj_A FBP-interacting repress 99.4 2.2E-12 7.6E-17 94.6 9.1 67 7-74 137-204 (216)
101 2ki2_A SS-DNA binding protein 99.4 2.5E-13 8.6E-18 88.3 3.4 67 7-75 13-80 (90)
102 2dh8_A DAZ-associated protein 99.4 1.9E-12 6.3E-17 86.5 7.6 66 7-74 28-94 (105)
103 2hgl_A HNRPF protein, heteroge 99.4 3.1E-13 1.1E-17 96.1 3.9 73 5-79 54-129 (136)
104 2ytc_A PRE-mRNA-splicing facto 99.4 1.7E-12 5.8E-17 83.4 7.1 60 7-72 24-84 (85)
105 1sjq_A Polypyrimidine tract-bi 99.4 9.2E-13 3.2E-17 90.3 6.0 64 6-75 27-92 (105)
106 1x4d_A Matrin 3; structural ge 99.4 7E-13 2.4E-17 90.2 5.3 63 6-74 27-91 (102)
107 1why_A Hypothetical protein ri 99.4 2.3E-12 7.7E-17 85.1 7.6 61 8-74 30-92 (97)
108 1fxl_A Paraneoplastic encephal 99.4 6.4E-12 2.2E-16 88.2 10.4 66 8-74 15-81 (167)
109 3md3_A Nuclear and cytoplasmic 99.4 5.2E-12 1.8E-16 88.6 9.9 67 7-74 12-78 (166)
110 1x4g_A Nucleolysin TIAR; struc 99.4 2.2E-12 7.7E-17 86.9 7.5 61 8-74 38-98 (109)
111 2cpj_A Non-POU domain-containi 99.4 1.6E-12 5.4E-17 86.1 6.6 61 8-74 28-88 (99)
112 2cq1_A PTB-like protein L; RRM 99.4 3.6E-12 1.2E-16 86.3 8.4 64 6-75 26-91 (101)
113 2xnq_A Nuclear polyadenylated 99.4 4.3E-12 1.5E-16 84.4 8.7 58 8-73 36-93 (97)
114 3smz_A Protein raver-1, ribonu 99.3 3.7E-12 1.3E-16 97.9 9.6 71 8-79 198-268 (284)
115 1wel_A RNA-binding protein 12; 99.3 2.6E-13 8.9E-18 93.7 2.8 72 5-78 35-107 (124)
116 2fc9_A NCL protein; structure 99.3 3E-12 1E-16 84.9 7.9 64 7-74 27-90 (101)
117 3zzy_A Polypyrimidine tract-bi 99.3 6.5E-12 2.2E-16 89.1 10.0 77 6-87 39-122 (130)
118 2diu_A KIAA0430 protein; struc 99.3 1.5E-12 5.3E-17 88.0 6.4 59 6-74 24-83 (96)
119 1uaw_A Mouse-musashi-1; RNP-ty 99.3 9.5E-13 3.2E-17 83.0 5.1 63 8-72 13-76 (77)
120 4f02_A Polyadenylate-binding p 99.3 2.9E-12 1E-16 95.5 8.6 66 7-74 115-180 (213)
121 2hvz_A Splicing factor, argini 99.3 8.6E-13 2.9E-17 87.6 4.9 64 7-75 12-75 (101)
122 2yh0_A Splicing factor U2AF 65 99.3 4.3E-12 1.5E-16 91.9 9.1 67 7-74 126-193 (198)
123 2jvo_A Nucleolar protein 3; nu 99.3 3.1E-12 1.1E-16 86.8 7.8 60 7-74 43-102 (108)
124 1wez_A HnRNP H', FTP-3, hetero 99.3 9.9E-13 3.4E-17 88.6 5.2 67 5-74 25-91 (102)
125 2dnq_A RNA-binding protein 4B; 99.3 3.5E-12 1.2E-16 83.1 7.6 59 8-74 21-79 (90)
126 1x4c_A Splicing factor, argini 99.3 4E-12 1.4E-16 85.8 8.1 62 6-74 26-92 (108)
127 2f3j_A RNA and export factor b 99.3 1.8E-12 6.1E-17 95.4 6.9 68 7-75 100-167 (177)
128 1wex_A Hypothetical protein (r 99.3 2E-12 6.8E-17 87.9 6.6 65 7-77 27-93 (104)
129 1x4e_A RNA binding motif, sing 99.3 4.2E-13 1.4E-17 86.4 3.0 65 7-72 17-82 (85)
130 1fxl_A Paraneoplastic encephal 99.3 5E-12 1.7E-16 88.8 8.7 64 8-72 101-167 (167)
131 2cpy_A RNA-binding protein 12; 99.3 1.1E-12 3.6E-17 89.5 5.0 75 5-81 25-100 (114)
132 2bz2_A Negative elongation fac 99.3 2.3E-12 7.9E-17 89.4 6.8 66 7-78 49-114 (121)
133 2dgu_A Heterogeneous nuclear r 99.3 6.5E-12 2.2E-16 83.8 8.6 60 7-74 23-82 (103)
134 2jvr_A Nucleolar protein 3; RN 99.3 2E-12 6.7E-17 89.1 6.1 64 6-73 39-103 (111)
135 1wg1_A KIAA1579 protein, homol 99.3 3.5E-12 1.2E-16 83.0 6.9 64 7-77 17-80 (88)
136 2ad9_A Polypyrimidine tract-bi 99.3 1.9E-12 6.4E-17 90.5 5.7 66 6-77 42-109 (119)
137 1x4b_A Heterogeneous nuclear r 99.3 5.2E-12 1.8E-16 85.8 7.7 66 7-74 39-105 (116)
138 2lea_A Serine/arginine-rich sp 99.3 1.4E-12 4.7E-17 91.9 5.0 68 6-74 58-126 (135)
139 2la4_A Nuclear and cytoplasmic 99.3 2.8E-12 9.6E-17 85.1 6.2 61 7-73 39-99 (101)
140 2dgt_A RNA-binding protein 30; 99.3 8.4E-12 2.9E-16 81.5 8.2 60 7-74 22-81 (92)
141 1sjr_A Polypyrimidine tract-bi 99.3 7.3E-12 2.5E-16 92.1 8.6 66 6-75 57-124 (164)
142 2dis_A Unnamed protein product 99.3 3.8E-12 1.3E-16 85.4 6.5 67 7-74 20-91 (109)
143 3q2s_C Cleavage and polyadenyl 99.3 2.6E-12 8.8E-17 98.0 6.1 68 6-74 79-149 (229)
144 2dnp_A RNA-binding protein 14; 99.3 6.9E-12 2.4E-16 81.6 7.3 60 7-74 21-80 (90)
145 2cqg_A TDP-43, TAR DNA-binding 99.3 2E-11 7E-16 81.1 9.7 65 7-74 27-92 (103)
146 1wf1_A RNA-binding protein RAL 99.3 4.6E-12 1.6E-16 85.5 6.6 59 8-74 41-99 (110)
147 3pgw_S U1-70K; protein-RNA com 99.3 7.2E-12 2.5E-16 103.8 9.1 68 6-74 113-181 (437)
148 2kvi_A Nuclear polyadenylated 99.3 3.7E-12 1.3E-16 84.1 5.9 60 7-74 23-82 (96)
149 2i2y_A Fusion protein consists 99.3 4.2E-12 1.4E-16 90.0 6.6 62 8-74 86-147 (150)
150 1fjc_A Nucleolin RBD2, protein 99.3 3.8E-12 1.3E-16 83.6 5.8 62 8-74 29-90 (96)
151 2rs2_A Musashi-1, RNA-binding 99.3 8.7E-12 3E-16 84.5 7.8 66 6-73 36-102 (109)
152 1b7f_A Protein (SXL-lethal pro 99.3 9.7E-12 3.3E-16 87.7 8.3 66 8-74 16-82 (168)
153 2e44_A Insulin-like growth fac 99.3 9.1E-12 3.1E-16 81.7 7.6 65 7-75 27-92 (96)
154 2cpd_A Apobec-1 stimulating pr 99.3 1.5E-11 5E-16 81.4 8.5 60 7-74 27-88 (99)
155 2e5i_A Heterogeneous nuclear r 99.3 1.3E-11 4.4E-16 86.8 8.5 64 6-75 36-102 (124)
156 2cjk_A Nuclear polyadenylated 99.3 5.1E-12 1.7E-16 89.3 6.5 66 7-74 99-165 (167)
157 2lmi_A GRSF-1, G-rich sequence 99.3 8.9E-13 3.1E-17 89.0 2.4 74 6-81 22-98 (107)
158 2e5j_A Methenyltetrahydrofolat 99.3 3.5E-12 1.2E-16 84.3 5.2 64 6-74 30-93 (97)
159 2m2b_A RNA-binding protein 10; 99.3 1.3E-12 4.4E-17 91.1 3.2 67 6-74 34-107 (131)
160 2dha_A FLJ20171 protein; RRM d 99.3 1E-12 3.5E-17 92.0 2.7 76 5-82 33-112 (123)
161 3tyt_A Heterogeneous nuclear r 99.3 9.8E-12 3.3E-16 93.1 7.9 61 8-73 18-78 (205)
162 2ghp_A U4/U6 snRNA-associated 99.3 1.2E-11 4.1E-16 95.3 8.4 65 8-74 224-290 (292)
163 1x4f_A Matrin 3; structural ge 99.3 3.3E-12 1.1E-16 88.4 4.6 61 8-74 39-101 (112)
164 2xs2_A Deleted in azoospermia- 99.3 9.3E-12 3.2E-16 82.6 6.6 64 6-72 20-83 (102)
165 1iqt_A AUF1, heterogeneous nuc 99.3 2.4E-12 8.1E-17 80.9 3.2 63 8-72 12-75 (75)
166 4f02_A Polyadenylate-binding p 99.3 3.6E-11 1.2E-15 89.5 10.1 68 6-74 26-94 (213)
167 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.4E-11 5E-16 83.3 7.1 60 8-74 30-89 (100)
168 2cpx_A Hypothetical protein FL 99.2 7.9E-12 2.7E-16 84.5 5.6 64 7-74 37-104 (115)
169 1l3k_A Heterogeneous nuclear r 99.2 3.6E-11 1.2E-15 86.9 9.4 67 6-74 115-182 (196)
170 1fje_B Nucleolin RBD12, protei 99.2 2E-11 7E-16 87.1 8.0 62 8-74 112-173 (175)
171 2hgn_A Heterogeneous nuclear r 99.2 1.5E-12 5E-17 93.0 1.8 70 5-77 56-125 (139)
172 2lcw_A RNA-binding protein FUS 98.9 6.9E-13 2.4E-17 90.4 0.0 68 6-74 18-94 (116)
173 3u1l_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.6E-16 95.0 7.5 63 6-74 154-228 (240)
174 3egn_A RNA-binding protein 40; 99.2 2.3E-11 7.9E-16 85.5 7.1 66 6-74 56-129 (143)
175 3smz_A Protein raver-1, ribonu 99.2 1.1E-10 3.9E-15 89.5 11.4 95 8-115 108-208 (284)
176 2voo_A Lupus LA protein; RNA-b 99.2 3.7E-11 1.3E-15 89.3 8.3 65 6-72 120-184 (193)
177 1fj7_A Nucleolin RBD1, protein 99.2 1.3E-12 4.4E-17 86.7 0.3 66 7-74 29-94 (101)
178 2cqh_A IGF-II mRNA-binding pro 99.2 1.6E-11 5.6E-16 80.2 5.5 61 7-74 20-82 (93)
179 3beg_B Splicing factor, argini 99.2 2.7E-11 9.1E-16 82.8 6.7 59 7-72 28-86 (115)
180 2fc8_A NCL protein; structure 99.2 6.5E-11 2.2E-15 78.4 8.3 64 7-74 27-91 (102)
181 2hgm_A HNRPF protein, heteroge 99.2 5E-12 1.7E-16 89.0 2.8 69 5-76 52-122 (126)
182 2qfj_A FBP-interacting repress 99.2 4.6E-11 1.6E-15 87.5 8.0 68 7-75 40-108 (216)
183 3pgw_A U1-A; protein-RNA compl 99.2 7.7E-11 2.6E-15 90.3 9.1 60 12-74 30-89 (282)
184 2e5g_A U6 snRNA-specific termi 99.2 6.2E-11 2.1E-15 77.7 7.0 64 6-75 19-82 (94)
185 2dnr_A Synaptojanin-1; RRM dom 99.2 1.2E-10 4E-15 78.1 8.1 59 6-73 26-84 (91)
186 2hzc_A Splicing factor U2AF 65 99.2 7E-11 2.4E-15 75.9 6.5 58 7-71 18-86 (87)
187 3pgw_A U1-A; protein-RNA compl 99.2 9.6E-11 3.3E-15 89.8 8.3 62 7-73 219-281 (282)
188 1l3k_A Heterogeneous nuclear r 99.2 1.8E-10 6.3E-15 83.1 9.3 67 6-74 24-91 (196)
189 3nmr_A Cugbp ELAV-like family 99.2 1.3E-10 4.4E-15 82.2 8.2 66 7-73 15-86 (175)
190 2j8a_A Histone-lysine N-methyl 99.1 1.3E-10 4.5E-15 82.9 6.9 71 5-76 16-97 (136)
191 3sde_A Paraspeckle component 1 99.1 2.4E-10 8.3E-15 87.5 8.5 68 7-75 108-179 (261)
192 1qm9_A Polypyrimidine tract-bi 99.1 1E-10 3.5E-15 85.2 5.7 62 8-74 133-196 (198)
193 2dnl_A Cytoplasmic polyadenyla 99.1 2E-10 6.8E-15 78.1 6.2 77 6-86 19-99 (114)
194 2adc_A Polypyrimidine tract-bi 99.1 1.6E-10 5.5E-15 86.8 6.2 62 8-74 48-109 (229)
195 2ghp_A U4/U6 snRNA-associated 99.1 2.4E-10 8.2E-15 88.0 7.2 67 7-74 129-196 (292)
196 1qm9_A Polypyrimidine tract-bi 99.1 1.3E-10 4.4E-15 84.6 5.1 62 8-74 17-78 (198)
197 2adc_A Polypyrimidine tract-bi 99.0 4.2E-10 1.4E-14 84.6 7.2 62 8-74 164-227 (229)
198 3d2w_A TAR DNA-binding protein 99.0 4.2E-10 1.4E-14 73.7 6.4 61 5-74 21-83 (89)
199 1ufw_A Synaptojanin 2; RNP dom 99.0 3.8E-10 1.3E-14 76.1 5.8 58 6-72 35-92 (95)
200 3tht_A Alkylated DNA repair pr 99.0 1.3E-09 4.5E-14 88.2 9.7 99 5-117 30-133 (345)
201 2cjk_A Nuclear polyadenylated 99.0 7.1E-10 2.4E-14 78.1 6.6 66 6-74 14-80 (167)
202 3sde_A Paraspeckle component 1 99.0 9.5E-10 3.3E-14 84.2 7.4 62 6-73 33-94 (261)
203 3tyt_A Heterogeneous nuclear r 98.9 1.5E-09 5.1E-14 81.1 6.8 64 7-72 135-204 (205)
204 1fje_B Nucleolin RBD12, protei 98.9 1.8E-10 6.2E-15 82.1 1.1 66 7-74 25-90 (175)
205 2g4b_A Splicing factor U2AF 65 98.9 2.4E-09 8.2E-14 75.7 6.6 60 7-73 16-86 (172)
206 1wf0_A TDP-43, TAR DNA-binding 98.8 1.8E-09 6.1E-14 69.7 3.7 59 7-74 17-77 (88)
207 2yh0_A Splicing factor U2AF 65 98.8 7.8E-09 2.7E-13 74.6 5.9 61 7-74 16-87 (198)
208 1owx_A Lupus LA protein, SS-B, 98.3 1.9E-06 6.6E-11 60.2 7.0 59 8-72 32-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.7 6.7E-05 2.3E-09 51.8 5.8 56 11-72 37-97 (117)
210 1wwh_A Nucleoporin 35, nucleop 97.4 0.0005 1.7E-08 47.8 6.9 58 8-72 36-94 (119)
211 1wey_A Calcipressin 1; structu 97.3 0.0006 2.1E-08 46.3 6.3 62 7-74 22-83 (104)
212 2i2y_A Fusion protein consists 97.0 0.0014 4.7E-08 45.6 6.1 81 34-115 10-96 (150)
213 2kn4_A Immunoglobulin G-bindin 96.8 0.0039 1.3E-07 43.4 6.9 36 25-61 2-37 (158)
214 3p3d_A Nucleoporin 53; structu 96.4 0.0036 1.2E-07 44.2 4.1 64 8-73 19-97 (132)
215 2d9n_A Cleavage and polyadenyl 95.1 0.0078 2.7E-07 38.2 1.5 30 75-104 6-35 (77)
216 2rhk_C Cleavage and polyadenyl 95.1 0.0056 1.9E-07 38.6 0.8 32 73-104 10-41 (72)
217 3d2q_A Muscleblind-like protei 94.8 0.0056 1.9E-07 38.3 0.2 25 79-103 6-31 (70)
218 3d2n_A Muscleblind-like protei 94.6 0.012 4E-07 38.2 1.4 26 78-103 8-34 (83)
219 1m9o_A Tristetraproline; Cys3H 94.4 0.018 6.3E-07 35.9 2.0 31 73-103 6-37 (77)
220 2d9m_A Zinc finger CCCH-type d 94.4 0.0097 3.3E-07 37.5 0.6 33 73-110 16-48 (69)
221 2rpp_A Muscleblind-like protei 93.5 0.017 5.8E-07 38.0 0.5 27 78-104 16-43 (89)
222 3d2q_A Muscleblind-like protei 93.5 0.019 6.6E-07 35.7 0.7 27 75-102 38-64 (70)
223 2e5s_A Otthump00000018578; ZF- 93.0 0.044 1.5E-06 36.5 2.0 38 75-116 52-89 (98)
224 2cqe_A KIAA1064 protein; CCCH 92.9 0.037 1.3E-06 36.8 1.4 24 80-103 37-61 (98)
225 2e5s_A Otthump00000018578; ZF- 92.6 0.0089 3E-07 39.9 -1.9 27 78-104 19-46 (98)
226 1uw4_A UPF3X; nonsense mediate 92.4 1.5 5.1E-05 28.6 8.9 65 9-74 15-87 (91)
227 2cqe_A KIAA1064 protein; CCCH 89.8 0.2 6.8E-06 33.1 2.5 26 77-102 11-36 (98)
228 3d2n_A Muscleblind-like protei 89.5 0.13 4.4E-06 33.2 1.4 32 77-112 41-72 (83)
229 1whv_A Poly(A)-specific ribonu 89.2 0.81 2.8E-05 30.6 5.2 41 10-58 30-70 (100)
230 3ctr_A Poly(A)-specific ribonu 88.3 0.69 2.3E-05 31.0 4.3 41 10-58 20-60 (101)
231 2rhk_C Cleavage and polyadenyl 87.9 0.086 3E-06 33.0 -0.3 47 56-105 22-70 (72)
232 1m9o_A Tristetraproline; Cys3H 87.8 0.1 3.5E-06 32.4 0.0 27 76-102 47-74 (77)
233 3u1l_A PRE-mRNA-splicing facto 87.0 0.14 4.7E-06 39.1 0.3 29 81-109 72-100 (240)
234 2rpp_A Muscleblind-like protei 86.5 0.24 8.2E-06 32.4 1.3 33 77-113 49-81 (89)
235 2d9n_A Cleavage and polyadenyl 84.5 0.22 7.4E-06 31.3 0.3 26 78-104 37-63 (77)
236 3h7h_B Transcription elongatio 81.6 1.2 4.2E-05 29.7 3.2 36 22-61 40-75 (106)
237 3pq1_A Poly(A) RNA polymerase; 78.1 1.1 3.6E-05 37.4 2.3 42 9-55 66-107 (464)
238 2l08_A Regulator of nonsense t 78.0 3 0.0001 27.5 4.1 40 35-74 51-95 (97)
239 3lpe_A Putative transcription 75.8 6.4 0.00022 25.2 5.2 33 23-59 40-72 (92)
240 2exu_A Transcription initiatio 71.5 2.5 8.7E-05 31.4 2.7 48 23-78 139-186 (200)
241 2fc6_A Nuclear, target of EGR1 68.2 0.76 2.6E-05 26.9 -0.6 30 77-106 18-48 (50)
242 2dhx_A Poly (ADP-ribose) polym 57.0 27 0.00093 23.2 5.4 47 20-74 37-83 (104)
243 3p8b_B Transcription antitermi 54.0 11 0.00038 26.0 3.3 34 23-60 33-66 (152)
244 2g0c_A ATP-dependent RNA helic 48.0 21 0.00071 21.3 3.5 43 22-72 32-74 (76)
245 2e7g_A Putative ribosome-bindi 47.1 60 0.0021 21.8 6.1 55 20-77 43-103 (129)
246 1hy9_A Cocaine and amphetamine 43.9 7.8 0.00027 21.5 0.9 11 89-99 26-36 (41)
247 4bby_A Alkyldihydroxyacetoneph 40.7 41 0.0014 28.7 5.3 54 18-73 369-422 (658)
248 3d45_A Poly(A)-specific ribonu 39.4 46 0.0016 27.6 5.3 42 10-59 454-495 (507)
249 2i9x_A Putative septation prot 33.9 63 0.0022 20.6 4.2 25 22-46 5-30 (87)
250 2hfq_A Hypothetical protein; A 30.3 39 0.0013 22.6 2.8 52 63-114 36-95 (109)
251 2ia9_A Putative septation prot 30.3 76 0.0026 20.8 4.2 25 22-46 5-30 (100)
252 2i9z_A Putative septation prot 28.8 85 0.0029 20.8 4.3 25 22-46 5-30 (105)
253 2kzf_A RBFA, ribosome-binding 28.8 82 0.0028 20.3 4.2 34 22-58 37-71 (106)
254 3pm9_A Putative oxidoreductase 28.3 87 0.003 25.5 5.2 57 18-75 212-268 (476)
255 1jos_A RBFA, ribosome-binding 26.0 1.2E+02 0.004 20.3 4.7 53 22-77 36-96 (128)
256 3pim_A Peptide methionine sulf 25.8 17 0.00059 26.6 0.4 58 42-103 123-185 (187)
257 1wvf_A 4-cresol dehydrogenase 25.6 79 0.0027 25.8 4.5 37 18-54 225-261 (520)
258 2dyj_A Ribosome-binding factor 24.4 60 0.002 20.7 2.8 36 21-59 31-67 (95)
259 1e8g_A Vanillyl-alcohol oxidas 23.0 88 0.003 25.9 4.3 38 18-55 257-294 (560)
260 1igq_A Transcriptional repress 21.5 80 0.0027 19.0 2.7 13 34-46 30-42 (62)
261 1gcc_A Ethylene responsive ele 21.4 63 0.0021 19.0 2.3 17 39-55 27-44 (63)
262 1k4n_A Protein EC4020, protein 21.3 1.6E+02 0.0056 21.5 5.0 58 3-70 19-84 (192)
263 2uuu_A Alkyldihydroxyacetoneph 21.2 1.4E+02 0.0048 25.0 5.2 55 18-74 299-353 (584)
264 2hiq_A Hypothetical protein YD 20.8 2E+02 0.0067 19.2 5.2 82 7-91 28-112 (113)
No 1
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.86 E-value=9.6e-22 Score=134.49 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHhhccCCceEEEEEeeCCC---CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLG---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~---~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
.+|+++.+||+++| ++||+|++|.|+++.. ++++|+|||+|.+.++|.+|++.|||++|+||+|.|+|+++++|..
T Consensus 23 ~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 23 EEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp HHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 57899999999999 7999999999998753 3679999999999999999999999999999999999999998875
Q ss_pred h
Q psy17806 80 A 80 (130)
Q Consensus 80 a 80 (130)
.
T Consensus 102 ~ 102 (105)
T 3v4m_A 102 R 102 (105)
T ss_dssp T
T ss_pred c
Confidence 3
No 2
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.84 E-value=5.6e-21 Score=130.35 Aligned_cols=72 Identities=85% Similarity=1.415 Sum_probs=68.2
Q ss_pred ChhhhHHHHHHHHHHh-hccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 1 MQEHYDNFFEDVFVEC-EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 1 ~q~~~d~~~eDi~~e~-~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
|+++|++|++||+++| . +||+|.+|.|+.+..++++|++||+|.+.++|.+|++.|||++|+||+|.|+|+|
T Consensus 32 l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 32 MQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4678999999999999 6 9999999999998778899999999999999999999999999999999999986
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.84 E-value=6.2e-21 Score=132.72 Aligned_cols=78 Identities=31% Similarity=0.487 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhh
Q psy17806 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACC 82 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c 82 (130)
+.|++|.+||+++| ++||.|++|.|+++. ++|++||+|.+.++|.+|++.|||++|+||+|+|+|+++++|....-
T Consensus 25 ~~~~el~edl~~~f-~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 25 GWDTEIKDDVIEEC-NKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFP 100 (114)
T ss_dssp THHHHHHHHHHHHH-TTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCG
T ss_pred hHHHHHHHHHHHHH-hccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCc
Confidence 46999999999999 799999999998763 58999999999999999999999999999999999999999976654
Q ss_pred cc
Q psy17806 83 RQ 84 (130)
Q Consensus 83 ~~ 84 (130)
..
T Consensus 101 ~a 102 (114)
T 3s6e_A 101 DS 102 (114)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 4
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.83 E-value=5.3e-21 Score=133.70 Aligned_cols=75 Identities=27% Similarity=0.588 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-----CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-----GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-----~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
.+++.+||+++| ++||+|.+|+|+.+. +++++|+|||+|.+.++|.+|++.|||++|+||+|+|.|+++++|..
T Consensus 35 ~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 35 DDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 113 (118)
T ss_dssp CTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred HHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhccc
Confidence 467999999999 799999999999864 24678999999999999999999999999999999999999999875
Q ss_pred h
Q psy17806 80 A 80 (130)
Q Consensus 80 a 80 (130)
.
T Consensus 114 ~ 114 (118)
T 3ue2_A 114 S 114 (118)
T ss_dssp T
T ss_pred c
Confidence 3
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.81 E-value=4e-20 Score=126.49 Aligned_cols=76 Identities=33% Similarity=0.509 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~--~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
.+++.+||+++| ++||+|.+|.|+.+. +++++|++||+|.+.++|.+|++.|||++|+||+|+|.|++.++|..+.
T Consensus 23 ~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~~ 100 (105)
T 2pe8_A 23 DEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLD 100 (105)
T ss_dssp ---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTTC
T ss_pred hHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhhh
Confidence 356889999999 799999999999864 3678999999999999999999999999999999999999998887653
No 6
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.74 E-value=2.4e-18 Score=129.50 Aligned_cols=75 Identities=27% Similarity=0.583 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCC-----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~-----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
.+++.+||+++| ++||+|.+|.|+++.. ++++|++||+|.+.++|.+|++.||||+|+||+|.|.|+++++|+.
T Consensus 139 ~~e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 139 DDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 217 (222)
T ss_dssp CTTHHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhh
Confidence 356789999999 7999999999997543 3899999999999999999999999999999999999999999875
Q ss_pred h
Q psy17806 80 A 80 (130)
Q Consensus 80 a 80 (130)
.
T Consensus 218 ~ 218 (222)
T 3dxb_A 218 S 218 (222)
T ss_dssp T
T ss_pred c
Confidence 3
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=109.02 Aligned_cols=72 Identities=35% Similarity=0.668 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccch
Q psy17806 3 EHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFR 78 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~-~~~~f~ 78 (130)
+.|+++.+||+++| ++||.|.+|.|++. +++|++||+|.+.++|.+|++.|||++|+||+|.|.++ +.++|.
T Consensus 34 ~~~~~~e~~l~~~f-~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 34 LVLNEIREDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp HHHHHHHHHHHHHG-GGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred HHHHHHHHHHHHHH-HccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 35788999999999 79999999988543 47999999999999999999999999999999999998 556664
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=99.60 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++||+|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++||+|.|.++.
T Consensus 30 ~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 30 NMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp TCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 33468999999 799999999999865 57899999999999999999999999999999999999984
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=100.47 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
+.-.++|++.| ++||.|.+|.|+.+. +++++|++||+|.+.++|.+|++.|||..++||+|.|++++...
T Consensus 17 ~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 17 NVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp TCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred CCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 34468899999 799999999999875 47899999999999999999999999999999999999996543
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.7e-15 Score=101.45 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCC-eeEEEEec
Q psy17806 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS 72 (130)
Q Consensus 4 ~~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G-R~I~v~~~ 72 (130)
.++...++|++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++| |+|.|.++
T Consensus 21 ~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 21 KVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp GHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 4578889999999 799999999999865 47899999999999999999999999999999 99999998
No 11
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=1.8e-14 Score=98.65 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|.+|.|+.+. +.++|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 17 ~te~~L~~~F-~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 17 IDNKALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCHHHHHHHH-hccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3468999999 799999999999875 44799999999999999999999999999999999999854
No 12
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=8.7e-15 Score=98.66 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCe-eEEEEec-cCccc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAELS-PVTDF 77 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR-~I~v~~~-~~~~f 77 (130)
++...++|++.| ++||.|.+|.|+ ..++.++|++||+|.+.++|.+|+..|||..++|| +|.|.++ +.++|
T Consensus 31 ~~~t~~~l~~~F-~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 31 LEKLKNVIHKIF-SKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKY 103 (105)
T ss_dssp TTHHHHHHHHHH-GGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCCC
T ss_pred hHHHHHHHHHHH-hcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhhh
Confidence 344789999999 799999999999 44578899999999999999999999999999999 9999998 44444
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=5.2e-14 Score=90.04 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|+.+ .++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 13 ~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 13 VDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3468899999 79999999999976 4578899999999999999999999999999999999999843
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=93.23 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
.-.+||++.| ++||.|.+|.|+.+..+.++|++||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 28 ~~~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 28 VREEILYELF-LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3468899999 79999999999988778889999999999999999999999999999999999874
No 15
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=94.87 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCe-eEEE
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYA 69 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR-~I~v 69 (130)
++...++|++.| ++||.|.++.|+. .+++++|++||+|.+.++|.+|++.|||..++|| +|.|
T Consensus 17 ~~~t~~~l~~~F-~~~G~i~~v~i~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 17 LEKLKNVIHKIF-SKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEECCC-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHHHH-hhcCCeEEEEecC-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 455889999999 7999999999984 4578899999999999999999999999999999 8875
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=6.2e-14 Score=90.44 Aligned_cols=66 Identities=20% Similarity=0.441 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 18 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 18 ITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3468899999 799999999999874 67889999999999999999999999999999999999984
No 17
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=6.2e-14 Score=93.95 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 41 ~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 41 VSDADIQELF-AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3468899999 79999999999988778899999999999999999999999999999999999874
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=3.1e-14 Score=91.49 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=58.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+||++.| ++||.|.++.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|++|.|+++
T Consensus 20 ~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 20 DDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CHHHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 458899999 79999999999876 45778999999999999999999999999999999999986
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-14 Score=92.70 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 29 ~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 29 CTKEELEEIC-KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCHHHHHHHH-HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3468899999 799999999999887788999999999999999999999999999999999999843
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.9e-14 Score=90.82 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=59.6
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 28 t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 28 TERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp CHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 457899999 799999999999865 46889999999999999999999999999999999999874
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.4e-14 Score=92.35 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 20 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 20 SSEEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CCHHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3467899999 799999999999876 6788999999999999999999999999999999999998543
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=92.72 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 27 ~~~~~l~~~f-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 27 VGWKKLKEVF-SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 3468899999 799999999999887788899999999999999999999999999999999999844
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=1.2e-13 Score=91.07 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
.-.+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++....
T Consensus 14 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 14 QTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 3468899999 799999999999874 47889999999999999999999999999999999999995543
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9.7e-14 Score=92.54 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+ ++..+|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 27 IDDERLRKAF-SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp CCHHHHHHTT-TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 3468899999 79999999999988 778999999999999999999999999999999999999854
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.5e-14 Score=90.89 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|+++
T Consensus 27 ~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 27 SLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34468899999 799999999999865 3678999999999999999999999999999999999986
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=91.93 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 27 TRETDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp CCHHHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCHHHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 3468899999 799999999999874 578999999999999999999999999999999999999854
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=1.5e-13 Score=91.74 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC---eeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG---RPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G---R~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..+.| ++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 27 QSEEDVLRLF-QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 3468899999 79999999999998778889999999999999999999999999988 9999999854
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=90.59 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 17 ~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 17 ITEDMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CCHHHHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 3468899999 799999999999875 477899999999999999999999999999999999999854
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.49 E-value=2.3e-13 Score=92.34 Aligned_cols=67 Identities=22% Similarity=0.462 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 27 ITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 3468899999 799999999999874 678899999999999999999999999999999999999844
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=1.8e-13 Score=93.01 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=60.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 38 t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 38 GDQDLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp CHHHHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CHHHHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 458899999 799999999999875 578899999999999999999999999999999999999844
No 31
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=93.40 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=58.1
Q ss_pred HHHHHH---HHhhccCCceEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVF---VECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~---~e~~skfG~I~~v~v~~~~~----~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||+ +.| ++||+|.+|.|+.+.. ..++|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 28 ~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 28 ADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp CCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred CHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 347788 888 7999999999997642 35679999999999999999999999999999999999844
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8e-14 Score=91.57 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhccCCceEEE-EEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEM-NVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v-~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++ .|+.+ .++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 17 ~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 17 IDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 3468899999 799999999 99987 4678899999999999999999999999999999999999844
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=9.9e-14 Score=95.30 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
+...+||++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++.....
T Consensus 18 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 18 ETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp TCCHHHHHHHH-HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 34568899999 799999999999887788899999999999999999999999999999999999955443
No 34
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=8e-14 Score=98.09 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
+++.+.|++.| ++||.|.+|.|... +.++|++||+|.+.++|.+|++.|||..+.||+|.|.|+....
T Consensus 44 ~~L~~~L~~~F-~~~G~I~~v~i~~~--~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 44 EKLQALLYALA-SSQGDILDIVVDLS--DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHHHH-HHHSCEEEEEECCC--CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHHHh-ccCCCeEEEEeccC--CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 34556677888 79999999998753 5679999999999999999999999999999999999995543
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=90.84 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhccCCceEE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEE--------MNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~--------v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...+||++.| ++||.|.. +.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 25 ~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 25 VTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp CCHHHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCHHHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 3468899999 79999999 9999874 5789999999999999999999999999999999999986
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=92.07 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=60.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 25 t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 25 DDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 468899999 799999999999763 577899999999999999999999999999999999999854
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=92.17 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 27 VSEPLLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3468899999 799999999999875 578999999999999999999999999999999999999844
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.4e-13 Score=89.86 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+... ++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~f-~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 27 FRDPDLRQMF-GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCHHHHHHHG-GGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 3468899999 79999999999987543 799999999999999999999999999999999999844
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=93.95 Aligned_cols=67 Identities=9% Similarity=0.275 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhccCCc--eEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCC----EeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGE--IEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNR----WFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~--I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr----~f~GR~I~v~~~~ 73 (130)
+...++|++.| ++||. |.+|.|+++. ++.++|++||+|.+.++|.+|++.|||. .++||+|.|+|+.
T Consensus 20 ~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 20 HTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp TCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred cCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 44578999999 79995 6799999865 5789999999999999999999999997 5999999999974
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.47 E-value=5.5e-14 Score=92.01 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccCC--ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG--~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++|| .|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 12 ~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 12 WTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp TCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred CCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 34568899999 7999 99999999874 678999999999999999999999999999999999999843
No 41
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=7e-14 Score=93.54 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
.-.++|++.| ++||+|.++++.. ++|++||+|.++++|.+|++.|||..++||+|.|.++.+++
T Consensus 19 ~te~~L~~lF-~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 19 IDGPTLRTLC-MQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp CCCHHHHHHH-HHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred CCHHHHHHHH-HhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 3457899999 7999999999976 48999999999999999999999999999999999996544
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-13 Score=90.91 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...++|++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 35 ~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 35 ATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCHHHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 3468899999 799999999999865 47889999999999999999999999999999999999983
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=91.38 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHHh-CCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~--~~~~~G~vfV~F~~~e~A~~A~~~l-nGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|..|.|+.+. ++..+|++||+|.+.++|.+|+..| ||..++|++|.|.++...
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 27 ANQREIRELF-STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred CCHHHHHHHH-HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 3468899999 799999999999873 5788999999999999999999999 999999999999999543
No 44
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.9e-13 Score=94.21 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 48 t~~~l~~~F-~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 48 SDADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp CHHHHHHHH-HTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CHHHHHHHH-HhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 468899999 799999999999877778899999999999999999999999999999999999854
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=93.82 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccCC-ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhC-CCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLN-NRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG-~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~ln-Gr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++|| .|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|+ |..++||+|.|+|+.
T Consensus 12 ~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 12 AATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp SCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 34568999999 7999 89999999764 57889999999999999999999885 567999999999983
No 46
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=89.40 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC----CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL----GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~----~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 17 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 17 TTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 4468899999 799999999999753 237899999999999999999999999999999999999844
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=91.39 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 25 ~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 25 TSPDSLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp CCHHHHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 3468899999 799999999999865 477899999999999999999999999999999999999854
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=3.9e-13 Score=86.95 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 19 t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 19 TAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp CHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468899999 799999999999874 6788999999999999999999 9999999999999999843
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-13 Score=89.97 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=56.1
Q ss_pred HHHHH----HHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 9 FEDVF----VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~----~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.+||+ +.| ++||.|.+|.|+.+... +|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 23 ~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 23 RKELQQLLQEAF-ARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHHHHHHHH-HHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHHHhc-cccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45555 889 79999999999987544 89999999999999999999999999999999999843
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=92.10 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=60.1
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..++|++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 39 te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 39 TEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CHHHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 468899999 799999999999763 578899999999999999999999999999999999999843
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=93.80 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...++|++.| ++||+|.+|.|+.+..+.++|++||+|.+.++|.+|+. |||..|+|++|.|.+..
T Consensus 22 ~~te~~L~~~F-~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 22 DATLDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp TCCHHHHHHHH-HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCHHHHHHHH-hhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 44568999999 79999999999987668899999999999999999999 99999999999999763
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.45 E-value=2.9e-13 Score=88.23 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..+.|..+ ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 20 ~t~~~l~~~f-~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 20 FTWKMLKDKF-NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3468899999 79999999999985 567899999999999999999999999999999999999843
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=3.8e-13 Score=90.59 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...++|++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 38 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 38 AQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp CCHHHHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 3467899999 799999999999764 57889999999999999999999999999999999999983
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=87.88 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCC-C-CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLG-D-HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~-~-~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|+.+.. + ..+|++||+|.+.++|.+|+..|||..++|++|.|+++..
T Consensus 16 ~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 16 VTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 3468899999 7999999999997642 2 3789999999999999999999999999999999999843
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4e-13 Score=89.50 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+.. ..+|++||+|.+.++|.+|+..|||..+.|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 27 VTEVLILQLF-SQIGPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCHHHHHHHH-HHHSCEEEEEEECCCC-SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHH-HhcCCEeEEEEEecCC-CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 3468899999 7999999999998753 3689999999999999999999999999999999999844
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.9e-13 Score=90.99 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
...+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++....
T Consensus 20 ~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 20 ATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp SCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred CCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 3468899999 799999999999764 57889999999999999999999999999999999999995543
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=91.30 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 23 ~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 23 DTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp TCCHHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34568899999 799999999999864 467899999999999999999999999999999999999843
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=90.97 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcc-CCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE-eCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDK-YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW-FGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~sk-fG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~-f~GR~I~v~~~~~ 74 (130)
...+||++.| ++ ||.|.+|.|+.+.++.++|++||+|.+.++|.+|++.|||.. ++|++|.|.++..
T Consensus 21 ~t~~~l~~~F-~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 21 VDDGMLYEFF-VKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCHHHHHHHH-HHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred CCHHHHHHHH-HHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 3468899999 79 999999999988778899999999999999999999999999 9999999999844
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.4e-13 Score=88.27 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++ |||..++|++|.|.++..
T Consensus 22 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 22 CGETELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp CCHHHHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 3468899999 799999999999864 46789999999999999999998 999999999999999844
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.43 E-value=3e-13 Score=92.18 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.-.+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|+++
T Consensus 52 ~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 52 FTDTDLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCHHHHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3468899999 799999999999764 5778999999999999999999999999999999999985
No 61
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=9.7e-13 Score=92.42 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=59.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
..+||++.| ++||.|..+.++.+ .++.++|++||+|.+.++|.+|+..|||..++|++|.|.|+.
T Consensus 100 t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 100 DDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 458999999 79999999999986 457889999999999999999999999999999999999974
No 62
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=93.72 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
+...+||++.| ++||.|.+|.|+. .+|++||+|.+.++|.+|++.|||..|+|++|.|+|++...|
T Consensus 21 ~~te~~L~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 21 GTLAAEIQETF-SRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp TCCHHHHHHHH-HTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 44568999999 7999999999975 468999999999999999999999999999999999977655
No 63
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.4e-13 Score=86.77 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
-.+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++ |||..++|++|.|.++
T Consensus 12 t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 12 TVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 468899999 799999999999875 57889999999999999999998 9999999999999864
No 64
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=93.63 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...+||++.| ++||.|.+|.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 75 ~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 75 VDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCHHHHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCHHHHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3468899999 79999999999986 35788999999999999999999999999999999999874
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.3e-13 Score=89.52 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..|.|..+ ...+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 34 ~t~~~l~~~F-~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 34 IRTKDIEDVF-YKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3468899999 79999999999764 45789999999999999999999999999999999999844
No 66
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.8e-13 Score=89.56 Aligned_cols=66 Identities=11% Similarity=0.222 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe--------CCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--------GGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f--------~GR~I~v~~~~ 73 (130)
...++|++.| ++||.|.++.|+.+.++.++|++||+|.+.++|.+|+..|||..+ .|++|.|.|+.
T Consensus 37 ~t~~~l~~~F-~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 37 MDEQELENML-KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CCHHHHHHTT-TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 3468899999 799999999999887778999999999999999999999999999 68889999985
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.42 E-value=4.5e-13 Score=93.87 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 58 ~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 58 TTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 3468899999 799999999999764 467899999999999999999999999999999999999844
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.1e-13 Score=91.66 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+.. .++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 41 ~te~~l~~~F-~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 41 FRDPDLRQMF-GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCHHHHHHHG-GGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3468899999 7999999999998753 4789999999999999999999999999999999999843
No 69
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.42 E-value=3.9e-13 Score=92.55 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 34 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 34 ATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp CCHHHHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 3468899999 799999999999774 67889999999999999999999999999999999999983
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=85.66 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++| .|.+|.|+.+.++.++|++||+|.+.++|.+|++ |||..++||+|.|.++..
T Consensus 21 ~~t~~~l~~~F-~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 21 NVTEKNVMEFL-APL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp SCCHHHHHHHH-TTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CCCHHHHHHHH-hhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 34468899999 799 9999999998778899999999999999999999 999999999999999854
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.3e-13 Score=90.30 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceE--------EEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIE--------EMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~--------~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|. .|.|+.+ .++.++|++||+|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 27 VTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp CCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred CCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 3468899999 7999999 6999987 4678899999999999999999999999999999999999844
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=2.7e-13 Score=88.85 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++||.|..+.++.+ .++..+|++||+|.+.++|.+|++.|||..++||+|.|.++.
T Consensus 26 ~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 26 TVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34568999999 79999998877764 456789999999999999999999999999999999999874
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=7.7e-13 Score=88.94 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhC------CCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLN------NRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~ln------Gr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|| |..++|++|.|.++..
T Consensus 26 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 26 DSEEEALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp TCCHHHHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 34568899999 799999999999864 46789999999999999999999999 9999999999999844
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=6.2e-13 Score=92.98 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
...+||++.| ++||.|++|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++....
T Consensus 54 ~~~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 54 VDEVQLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp CCHHHHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 3468899999 799999999999764 46789999999999999999999999999999999999995543
No 75
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=9.8e-13 Score=93.41 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=59.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
..+||++.| ++||.|..+.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 107 t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 107 NDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999 799999999999875 6789999999999999999999999999999999999986
No 76
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=1.4e-12 Score=92.96 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.|+++..
T Consensus 50 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 50 YTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp TCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34568999999 799999999999875 477899999999999999999999999999999999999944
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.3e-13 Score=87.81 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceE-EEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCee----EEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIE-EMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP----VYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~-~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~----I~v~~~~~ 74 (130)
...+||++.| ++||.|. ++.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++ |.|.++..
T Consensus 21 ~t~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 21 MDENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp CCHHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred CCHHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 3468899999 7999999 99999875 5788999999999999999999999999999999 99999844
No 78
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2.1e-13 Score=93.89 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhhccCCc---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 5 YDNFFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~---I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
|+...+||++.| ++||. |.+|.|+.+..++++|++||+|.+.++|.+|++ |||..++||+|.|.++....+..+.
T Consensus 27 ~~~te~~l~~~F-~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~~ 104 (118)
T 2db1_A 27 WSCSIEDVQNFL-SDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDWVL 104 (118)
T ss_dssp TTCCHHHHHHHT-TTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHHHH
Confidence 455678999999 79999 899999987778899999999999999999999 9999999999999999766655544
Q ss_pred h
Q psy17806 82 C 82 (130)
Q Consensus 82 c 82 (130)
.
T Consensus 105 ~ 105 (118)
T 2db1_A 105 K 105 (118)
T ss_dssp H
T ss_pred H
Confidence 3
No 79
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.40 E-value=1.3e-12 Score=89.74 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...+||++.| ++||.|.+|.|+.+ .++.++|++||+|.+.++|.+|+ .|||..++|++|.|.++.
T Consensus 48 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 48 STAQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3468899999 79999999999986 46788999999999999999999 899999999999999984
No 80
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.3e-13 Score=89.56 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 37 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 37 IRPRDLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCHHHHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 3468899999 799999999999765 3678999999999999999999 9999999999999999843
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1e-12 Score=87.77 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~--~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++|| |.+|.|+.+.. +..+|++||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 27 VTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 3468899999 7999 99999998753 678999999999999999999 9999999999999999854
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.40 E-value=4.8e-13 Score=89.42 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEe---CCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f---~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..+ .|++|.|.++..
T Consensus 25 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 25 LDEKDLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CCHHHHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCHHHHHHHH-HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 3467899999 799999999999865 477899999999999999999999999988 999999999854
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=95.78 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhccCC--ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG--~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++|| .|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|||..++||+|.|.++..
T Consensus 66 ~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 66 WTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp TCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred CCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 34568999999 7999 99999999874 678999999999999999999999999999999999999844
No 84
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=4.3e-13 Score=88.17 Aligned_cols=64 Identities=14% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
.+.|++.| ++||.|.+|.|+.. +.++|++||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 26 ~~~l~~~f-~~~G~i~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 26 KKSLHAIF-SRFGQILDILVSRS--LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHHH-GGGSCEEEEECCHH--HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHHH-HhCCCEEEEEEEcC--CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 33444899 79999999999852 466899999999999999999999999999999999998543
No 85
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=92.48 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
|+...+||++.| ++| .|.+|.|+.+..++++|++||+|.+.++|.+|+ .|||..++||.|.|..+....|..+.
T Consensus 26 ~~~te~dl~~~F-~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~~ 99 (109)
T 2dnn_A 26 FSAMENDVRDFF-HGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVAAG 99 (109)
T ss_dssp SSCCHHHHHHHT-TTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHHHH
T ss_pred CCCCHHHHHHHh-ccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhhcC
Confidence 455678999999 799 899999998777889999999999999999999 69999999999999998777776665
No 86
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.6e-13 Score=90.53 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhccCCceEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~-v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
|+...+||++.| ++||.|.+ |.|+.+.++.++|++||+|.+.++|.+|+.. ||..++||+|.|..+....+..
T Consensus 25 ~~~te~~l~~~F-~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 25 FGCSKEEIVQFF-SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp TTCCHHHHHHHT-TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred CCCCHHHHHHHH-HhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 445678999999 79999998 8898887788999999999999999999998 9999999999999986655543
No 87
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.3e-13 Score=93.82 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe-----CCeeEEEEeccCccc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-----GGRPVYAELSPVTDF 77 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f-----~GR~I~v~~~~~~~f 77 (130)
++...++|++.| ++||.|.+|.|+.+ +|++||+|.+.++|.+|++.|||+.+ .|++|++.|+....|
T Consensus 37 ~~~te~~L~~~F-~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 37 NGVSRNQLLPVL-EKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp GTCCHHHHHHHH-HHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 344568999999 79999999998752 79999999999999999999999998 799999999854333
No 88
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4e-13 Score=88.60 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++||.|..+.++.+ .++.++|++||+|.+.++|.+|++.|||..++||+|.|+++.
T Consensus 26 ~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 26 TVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp TCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34568899999 79999997776653 457789999999999999999999999999999999999974
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=2.1e-12 Score=86.07 Aligned_cols=66 Identities=14% Similarity=0.308 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++|| |.+|.|+.+. ++..+|++||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 26 ~~t~~~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 26 NTVQGDIDAIF-KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp TCCHHHHHHHT-TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CCCHHHHHHHH-HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 34468899999 7997 9999999875 4788999999999999999999 8999999999999999844
No 90
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=9.2e-13 Score=89.61 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. +++.+|++||+|.+.++|.+|++.||+ .++|++|.|.++..
T Consensus 29 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 29 TTDASLRKYF-EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCHHHHHHHH-HhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 3468899999 799999999999874 578899999999999999999999999 89999999999843
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.39 E-value=7.1e-13 Score=94.36 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 81 ~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 81 RTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp TCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34568999999 799999999999874 678999999999999999999999999999999999999854
No 92
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.7e-12 Score=85.81 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.+|.|.. .+|++||+|.+.++|.+|+..|||..++|++|.|.++...
T Consensus 25 ~t~~~l~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 25 MTPTLLRGAF-SPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCHHHHHHHH-hhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3468899999 7999999999953 4799999999999999999999999999999999998543
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.39 E-value=2.6e-12 Score=82.94 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...++|++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++ ++|..++|++|.|.++
T Consensus 23 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 23 TSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 3468899999 799999999999874 57889999999999999999996 5888999999999864
No 94
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.38 E-value=9.6e-13 Score=89.24 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+ +.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 20 ~t~~~l~~~F-~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 20 ITAEEMYDIF-GKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCHHHHHHHH-HhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3467899999 79999999999975 34589999999999999999999999999999999999843
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.38 E-value=2.4e-12 Score=92.91 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...++|+..| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 84 ~t~~~L~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 84 AQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCHHHHHHHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3468899999 799999999999874 67889999999999999999999999999999999999983
No 96
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=2.1e-12 Score=91.17 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~ 72 (130)
...++|++.| ++||.|..+.|+.+. ++.++|++||+|.+.++|.+|++.|||..++| ++|.|.|+
T Consensus 101 ~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 101 ITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 3458899999 799999999999875 67889999999999999999999999999988 99999885
No 97
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=2.1e-12 Score=91.54 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC---CeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~---GR~I~v~~~~ 73 (130)
...++|++.| ++||.|.++.|+.+..+.++|++||+|.+.++|.+|++.|||..+. ||+|.|.|++
T Consensus 107 ~t~~~l~~~F-~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 107 CTENDIRVMF-SSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHH-HhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 3468899999 7999999999999877889999999999999999999999998775 4999999873
No 98
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.37 E-value=8.7e-13 Score=89.75 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE--eCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW--FGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~--f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.+++. +|++||+|++.++|.+|++.|||.. +.||+|.|+|+..
T Consensus 32 ~~te~~L~~lF-~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 32 GVVEADLVEAL-QEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TCCHHHHHHHH-GGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCHHHHHHHH-hccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 44568999999 79999999999853 6999999999999999999999985 7899999999854
No 99
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.37 E-value=5.5e-13 Score=88.89 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~--~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++|| |.+|.|+.+. +++++|++||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 32 t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 32 TEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp SSSHHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CHHHHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 347899999 7999 9999999875 5788999999999999999999 8999999999999999843
No 100
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=2.2e-12 Score=94.64 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..+.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 137 ~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 137 LSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp CCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 3468999999 799999999999874 578899999999999999999999999999999999999843
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.37 E-value=2.5e-13 Score=88.33 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.+ |.+|+..|||..++|++|.|.++...
T Consensus 13 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 13 ATSEQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSHHHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3467899999 799999999999865 4778999999999999 99999999999999999999998543
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=86.51 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|+.. ||..++|++|.|.++..
T Consensus 28 ~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 28 TTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence 4468899999 799999999999874 578899999999999999999999 99999999999999843
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.36 E-value=3.1e-13 Score=96.15 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhccCCc---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~---I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
|+...+||++.| ++||. |.+|.|+.+..++++|++||+|.+.++|.+|++ |||..++||+|.|.++...+...
T Consensus 54 ~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~~~ 129 (136)
T 2hgl_A 54 WSCSVEDVQNFL-SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEMDW 129 (136)
T ss_dssp TTCCHHHHHHHT-TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHHHH
T ss_pred CCCCHHHHHHHH-HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHHHHH
Confidence 455678999999 79999 899999987778899999999999999999999 99999999999999986555443
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=83.35 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh-CCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l-nGr~f~GR~I~v~~~ 72 (130)
...+||++.| ++||.|.++.++.+ +|++||+|.+.++|.+|++.| ||..++|++|.|+++
T Consensus 24 ~t~~~l~~~f-~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 24 ITETDLRNHF-YQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCHHHHHHHH-HTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCHHHHHHHH-HhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3468899999 79999999999973 799999999999999999999 999999999999986
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.2e-13 Score=90.31 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln--Gr~f~GR~I~v~~~~~~ 75 (130)
+.-.+||++.| ++||+|.+|.|+.+ +|++||+|++.++|.+|++.|+ |..++||+|.|.++...
T Consensus 27 ~vte~dL~~lF-~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 27 DVTEGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp TSCHHHHHHHH-HHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34568999999 79999999999874 7999999999999999999986 47899999999998543
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=7e-13 Score=90.18 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC--EeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr--~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+ +|++||+|++.++|.+|++.|||. .+.||+|+|.++..
T Consensus 27 ~~te~dL~~lF-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 27 KNLRYQLLQLV-EPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSHHHHHHTTT-GGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred cCCHHHHHHHH-HhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 44578999999 79999999999864 589999999999999999999975 59999999999853
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=85.07 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC--CeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG--GRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~--GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.+|.+..+ +|++||+|.+.++|.+|++.|||..++ |++|.|.++..
T Consensus 30 t~~~l~~~F-~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 30 SLAALAREF-DRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CHHHHHHHH-HTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CHHHHHHHH-HhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 468899999 79999999999864 799999999999999999999999999 99999999843
No 108
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=6.4e-12 Score=88.24 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=61.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.++.++.+. ++.++|++||+|.+.++|.+|++.|||..+.|++|.+.++..
T Consensus 15 ~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 15 TQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468899999 799999999999876 678999999999999999999999999999999999999854
No 109
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.2e-12 Score=88.62 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|+.+..+.++|++||+|.+.++|.+|+..|||..+.|++|.+.++..
T Consensus 12 ~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 12 ITEDILKQYF-QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 3468899999 799999999999887778899999999999999999999999999999999999843
No 110
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.2e-12 Score=86.89 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=56.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.+|.|+.+ +|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 38 t~~~l~~~F-~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 38 TDQLMRQTF-SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CHHHHHHHH-HHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CHHHHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 457899999 79999999999975 79999999999999999999999999999999999844
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.6e-12 Score=86.12 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.+|.+..+ +|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 28 t~~~l~~~F-~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 28 TEEEMRKLF-EKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CHHHHHHHT-STTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CHHHHHHHH-hhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 468899999 79999999999864 69999999999999999999999999999999999844
No 112
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.6e-12 Score=86.26 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--CCCEeCCeeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL--NNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l--nGr~f~GR~I~v~~~~~~ 75 (130)
+...+||++.| ++||.|.+|.|+.+ +|++||+|.+.++|.+|++.| ++..+.||+|.|.|+...
T Consensus 26 ~~te~~L~~~F-~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 26 EVTETEVIALG-LPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp TCCHHHHHHTT-TTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 34568899999 79999999999864 799999999999999999987 577899999999998543
No 113
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.35 E-value=4.3e-12 Score=84.38 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=53.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.+||++.| ++||.|.++.|. +|++||+|.+.++|.+|+..|||..++|++|.|+++.
T Consensus 36 t~~~L~~~F-~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 36 SKEDLFRIF-SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CHHHHHHHH-GGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CHHHHHHHH-HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 457899999 799999999994 6999999999999999999999999999999999974
No 114
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=3.7e-12 Score=97.86 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~ 79 (130)
-.+||++.| ++||.|.++.|+.+.++.++|++||+|.+.++|.+|+..|||+.++|++|.|.|+....-+.
T Consensus 198 ~~~~l~~~f-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 198 DVDALCRAL-SAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp CHHHHHHHT-CSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred CHHHHHHHh-hCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 358999999 79999999999998788899999999999999999999999999999999999996654443
No 115
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.6e-13 Score=93.72 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhccCCceEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 5 YDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~-v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
++...+||++.| ++||.|.+ +.+..+.++.++|++||+|.+.++|.+|+. |||..++||+|.|.++....+.
T Consensus 35 ~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~ 107 (124)
T 1wel_A 35 FEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGML 107 (124)
T ss_dssp TTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHH
T ss_pred CCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHH
Confidence 445578999999 79999998 555566678899999999999999999999 9999999999999999665543
No 116
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3e-12 Score=84.93 Aligned_cols=64 Identities=30% Similarity=0.290 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.| .|+.+.++..+|++||+|.+.++|.+|+..|||..+.|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 27 ATEETLQEVF-EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCHHHHHHHC-SSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCHHHHHHHH-HhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4468899999 799988 566655678899999999999999999999999999999999999844
No 117
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=6.5e-12 Score=89.12 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeE-EEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCcc----ch
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVTD----FR 78 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~-vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~~~~~----f~ 78 (130)
..-.++|++.| ++||.|.+|+|... .+|+ +||+|.+.++|.+|++.|||..+.| ++|.++|+.... +.
T Consensus 39 ~vte~~L~~lF-s~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n 113 (130)
T 3zzy_A 39 PVTLDVLHQIF-SKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYN 113 (130)
T ss_dssp CCCHHHHHHHH-TTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCC
T ss_pred CCCHHHHHHHH-hCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEec
Confidence 34467899999 89999999999864 2577 9999999999999999999999988 999999995543 33
Q ss_pred hhhhccccc
Q psy17806 79 EACCRQYEM 87 (130)
Q Consensus 79 ~a~c~~~~~ 87 (130)
...++.|..
T Consensus 114 ~~~srDyt~ 122 (130)
T 3zzy_A 114 NDKSRDYTR 122 (130)
T ss_dssp SSSEEETTC
T ss_pred CCCcccCCC
Confidence 334455543
No 118
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=88.04 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhccC-CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skf-G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+++..+|++.| ++| |+|.+|. + |++||+|.+.++|.+|++.|||..+.||+|++.|++.
T Consensus 24 ~~lk~~L~~lF-~~yGG~Vl~Vt------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 24 KSVSNRLRRLS-DNCGGKVLSIT------G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp HHHHHHHHHHH-HTTTCCEEECC------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred HHHHHHHHHHH-HHcCCeeEEEe------c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 46677899999 799 5999992 2 9999999999999999999999999999999999954
No 119
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=9.5e-13 Score=82.96 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
-.+||++.| ++||.|.++.++.+. ++.++|++||+|.+.++|.+|++.|| ..++|++|.|.++
T Consensus 13 t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 13 TQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 357899999 799999999999875 57889999999999999999999999 9999999999875
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.35 E-value=2.9e-12 Score=95.48 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|+++.|+.+. +..+|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 115 ~t~~~l~~~F-~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 115 IDNKALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cHHHHHHHHH-hhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3468999999 799999999999864 34799999999999999999999999999999999999854
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=8.6e-13 Score=87.58 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 12 ~t~~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 12 AGKGELERAF-SYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CSHHHHHHHH-HHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 3468899999 79999999999986 6899999999999999999999999999999999999543
No 122
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.34 E-value=4.3e-12 Score=91.92 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 126 ~~~~~l~~~f-~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 126 LNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CCHHHHHHHH-HTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHH-HHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3468899999 799999999999875 678899999999999999999999999999999999999843
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.34 E-value=3.1e-12 Score=86.80 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.+|.|. +|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 43 ~t~~~L~~~F-~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 43 VQESELNEIF-GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCHHHHHHHH-TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3468899999 799999999998 59999999999999999999999999999999999843
No 124
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=9.9e-13 Score=88.58 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|+...+||++.| ++||. ++|.|+.+.+++++|++||+|.+.++|.+|+ .+||..++||.|.|..+..
T Consensus 25 ~~~te~~l~~~F-~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 25 YRATENDIYNFF-SPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp TTCCHHHHHHSS-CSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred CCCCHHHHHHHH-HHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 455678999999 79995 5999998877889999999999999999999 5899999999999998754
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3.5e-12 Score=83.09 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.++.|+ +|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 21 t~~~l~~~F-~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 21 TEQEIRSLF-EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CHHHHHHHH-HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CHHHHHHHH-HhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 457899999 799999999998 48999999999999999999999999999999999844
No 126
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=4e-12 Score=85.76 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC-----eeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G-----R~I~v~~~~~ 74 (130)
+...+||++.| ++||.|..|.|+.+ |++||+|.+.++|.+|++.|||..++| ++|.|.++..
T Consensus 26 ~~t~~~l~~~F-~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 26 SGSWQDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SCCHHHHHHHH-GGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCHHHHHHHH-HhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 34568999999 79999999999875 999999999999999999999999999 9999999844
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.8e-12 Score=95.43 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|+.|.|+.+.++.++|++||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 100 ~te~~L~~~F-~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 100 VSDADIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CCHHHHHHHH-HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 3468899999 7999999999998777788999999999999999999999999999999999998553
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2e-12 Score=87.88 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC--EeCCeeEEEEeccCccc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr--~f~GR~I~v~~~~~~~f 77 (130)
...+||++.| ++||.|.+|.|+.. +|++||+|.+.++|.+|++.|||. .++||+|.|.|+.....
T Consensus 27 ~te~~L~~~F-~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 27 VVEADLVEAL-EKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp CCHHHHHHHH-TTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCHHHHHHHH-HhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 3468899999 79999999999863 799999999999999999999775 49999999999965443
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.2e-13 Score=86.40 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|+.|.+.+.
T Consensus 17 ~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 17 TTDQDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCHHHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3467899999 799999999999864 5778999999999999999999999999999999987654
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=5e-12 Score=88.81 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=57.6
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCee--EEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP--VYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~--I~v~~~ 72 (130)
..++|++.| ++||.|..+.++.+. ++.++|++||+|.+.++|.+|++.|||+.++|+. |.+.|+
T Consensus 101 t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 101 TQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 468899999 799999999999865 5778999999999999999999999999999975 888774
No 131
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=89.54 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhccCCce-EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 5 YDNFFEDVFVECEDKYGEI-EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I-~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
++...+||++.| ++||.| .+|.|+.+.++.++|++||+|.+.++|.+|++. ||..++||+|.|.++.....+...
T Consensus 25 ~~~t~~~l~~~F-~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~~ 100 (114)
T 2cpy_A 25 FSITKMDVLQFL-EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREIE 100 (114)
T ss_dssp TTSCHHHHHHHT-TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHHH
T ss_pred CcCCHHHHHHHH-HhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHHH
Confidence 344568999999 799999 899999877788999999999999999999987 999999999999999665554443
No 132
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.3e-12 Score=89.39 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
...+||++.| ++||.|.+|.|. ..+|++||+|.+.++|.+|+..|||..++|++|.|.++......
T Consensus 49 ~te~~L~~~F-~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 49 MTPTLLRGAF-SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCHHHHHHHH-STTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCHHHHHHHH-HccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 3468999999 799999999996 35799999999999999999999999999999999999654433
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=6.5e-12 Score=83.79 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|.+|.|++ |++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 23 ~t~~~l~~~F-~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 23 VTEEILEKAF-SQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCHHHHHHHH-HHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3468899999 7999999999973 6999999999999999999999999999999999944
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.33 E-value=2e-12 Score=89.05 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++|| .|..+.|... .++|++||+|.+.++|.+|++.|||..++||+|.|+++.
T Consensus 39 ~~te~dL~~~F-~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 39 GCSWQDLKDLA-RENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCHHHHHHHH-HHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCHHHHHHHH-HHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34568999999 7999 9999999742 468999999999999999999999999999999999983
No 135
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=3.5e-12 Score=82.98 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
.-.+||++.| ++| .|.++.|. .++|++||+|.+.++|.+|++.|||..++|++|.|++++...+
T Consensus 17 ~t~~~l~~~F-~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 17 SNCQEVHDLL-KDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp CCHHHHHHHT-CSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCHHHHHHHH-hhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 3468899999 799 99999995 4689999999999999999999999999999999999977654
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=90.50 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC--CEeCCeeEEEEeccCccc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN--RWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG--r~f~GR~I~v~~~~~~~f 77 (130)
+...+||++.| ++||.|.+|.|+.+ +|++||+|++.++|.+|++.||| ..++||+|.|.|+.....
T Consensus 42 ~vte~dL~~lF-~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 42 DVTEGEVISLG-LPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp TCCHHHHHHHH-TTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 44568999999 79999999999874 79999999999999999999984 689999999999955433
No 137
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.2e-12 Score=85.84 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...++|++.| ++||.|..|.|+.+. ++..+|++||+|.+.++|.+|+.. ||..++|++|.|.++..
T Consensus 39 ~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 39 TTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp CCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 3468899999 799999999999874 477899999999999999999998 99999999999999843
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.32 E-value=1.4e-12 Score=91.91 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 58 ~~te~~L~~~F-~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 58 RTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp SCHHHHHHHHH-GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34578999999 799999999999764 578899999999999999999999999999999999999844
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.8e-12 Score=85.07 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
...+||++.| ++||.|.++.+.. .+|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 39 ~~~~~l~~~f-~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 39 ATEADLIPLF-QNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCHHHHHHHH-HTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred cCHHHHHHHH-HhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3468899999 7999999999984 47999999999999999999999999999999999874
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=8.4e-12 Score=81.54 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|.+ |++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 22 ~t~~~l~~~F-~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 22 CTNQELRAKF-EEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCHHHHHHHH-HTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3468899999 7999999999984 5999999999999999999999999999999999843
No 141
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=7.3e-12 Score=92.10 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~~~~ 75 (130)
+...++|++.| ++||+|++|.|... ..+|++||+|.+.++|.+|++.|||+.+.| ++|.|+|+...
T Consensus 57 ~vted~L~~~F-s~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 57 PVTLDVLHQIF-SKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CCCHHHHHHHH-HHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34467899999 79999999999763 257999999999999999999999999955 99999999544
No 142
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.8e-12 Score=85.38 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccCCc-eEEEEEe-eCC-CCCceeEEEEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGE-IEEMNVC-DNL-GDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~-I~~v~v~-~~~-~~~~~G~vfV~F~~~e~A~~A~~~ln--Gr~f~GR~I~v~~~~~ 74 (130)
...++|++.| ++||. |.++.|+ .+. ++.++|++||+|.+.++|.+|++.|| +..++|++|.|.++..
T Consensus 20 ~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 20 KKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp SCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred CCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 3468899999 79999 9999998 443 45789999999999999999999996 5899999999999943
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=2.6e-12 Score=98.04 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhccCC--ceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG--~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++|| .|++|.|+.+. ++.++|++||+|.+.++|.+|++.|||..|+||+|.|.++..
T Consensus 79 ~~te~~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 79 WTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TCCHHHHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CCCHHHHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 44568999999 7999 99999999874 678999999999999999999999999999999999999854
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.9e-12 Score=81.65 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|+. |++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 21 ~t~~~l~~~F-~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 21 CTSQELRSLF-ERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCHHHHHHHH-HHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHH-HcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3468899999 7999999999984 5999999999999999999999999999999999844
No 145
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2e-11 Score=81.10 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|+. ++..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 27 TTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred CCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 3468899999 799999999999874 57899999999999999999998 57899999999999843
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.30 E-value=4.6e-12 Score=85.47 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=54.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.+|.| .+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 41 t~~~l~~~F-~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 41 KKSDVETIF-SKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CHHHHHHHH-GGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CHHHHHHHH-HhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 468899999 79999999999 369999999999999999999999999999999999843
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.30 E-value=7.2e-12 Score=103.82 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...++|...| ++||.|+.|.|+.+. ++.++|++||+|.+.++|.+|+..|||.+|+|++|.|.++..
T Consensus 113 ~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 113 DTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 34568899999 799999999999764 678899999999999999999999999999999999999954
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.7e-12 Score=84.11 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|+ +|++||+|.+.++|.+|+..|||..+.|++|.|+++..
T Consensus 23 ~t~~~l~~~F-~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 23 VSKEDLFRIF-SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CCHHHHHHHH-TTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCHHHHHHHH-HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 3468899999 799999999995 58999999999999999999999999999999999844
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.30 E-value=4.2e-12 Score=89.98 Aligned_cols=62 Identities=27% Similarity=0.340 Sum_probs=56.7
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 86 t~~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 86 NKTELERAF-GYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCHHHHHHH-HHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CHHHHHHHH-HhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 357899999 79999999999976 479999999999999999999999999999999999843
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.29 E-value=3.8e-12 Score=83.58 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|..+ ..++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 29 t~~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 29 TEDELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp CHHHHHHHH-CSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CHHHHHHHH-hhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 468899999 799999777 23467899999999999999999999999999999999999843
No 151
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.29 E-value=8.7e-12 Score=84.51 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|+..+ |..++|++|.|.++.
T Consensus 36 ~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 36 QTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp TCCHHHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred CCCHHHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 33468899999 799999999999875 4788999999999999999999987 599999999999984
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=9.7e-12 Score=87.73 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=60.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.+||++.| ++||.|.++.+..+. ++.++|++||+|.+.++|.+|++.|||..++|++|.+.++..
T Consensus 16 ~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 16 TDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 468899999 799999999999764 577899999999999999999999999999999999999854
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.1e-12 Score=81.72 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhccCCceEEE-EEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v-~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.++ .|+.+. ..|.+||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 27 ~t~~~l~~~F-~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 27 LQWEVLDSLL-VQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCHHHHHHHH-HHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468899999 799999999 577653 2456999999999999999999999999999999999654
No 154
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-11 Score=81.38 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhccC--CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skf--G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++| |.|.++.++ +|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 27 TSEEMIEKEF-NNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCHHHHHHHH-HTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CCHHHHHHHH-HhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3468899999 799 999999876 48999999999999999999999999999999999844
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=1.3e-11 Score=86.76 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeE-EEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~-vfV~F~~~e~A~~A~~~lnGr~f~G--R~I~v~~~~~~ 75 (130)
..-.++|++.| ++||.|.+|+|... .|+ +||+|.+.++|.+|++.|||..+.| ++|.|+|+...
T Consensus 36 ~vt~~~L~~~F-s~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 36 PITVDVLYTVC-NPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp CCCHHHHHHHH-TTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 34467899999 79999999999763 286 9999999999999999999999987 69999999543
No 156
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=5.1e-12 Score=89.28 Aligned_cols=66 Identities=8% Similarity=0.055 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|++ |||..++|++|.|.++..
T Consensus 99 ~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 99 VRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 3468899999 799999999999864 57889999999999999999998 999999999999999843
No 157
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=8.9e-13 Score=88.97 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccCCc---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 6 DNFFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~---I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
+...+||++.| ++||. |.+|.|+.+..+.++|++||+|.+.++|.+|+. |||..++||+|.|.++...+...+.
T Consensus 22 ~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~~~ 98 (107)
T 2lmi_A 22 SCTMEDVLNFF-SDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVDALM 98 (107)
T ss_dssp SCCSHHHHHHT-TTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHHHHH
T ss_pred CCCHHHHHHHH-HhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHHHHH
Confidence 34468899999 79998 999999987768899999999999999999999 9999999999999998665554443
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=84.29 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|. +.+.. +..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 30 ~~t~~~l~~~F-~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 30 DARVSDLKRAL-RELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp TCCHHHHHHHH-HHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred cCcHHHHHHHH-HhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 33468899999 7999997 56654 35689999999999999999999999999999999999843
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=91.13 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccCCceEE--EEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCC----EeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEE--MNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNR----WFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~--v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr----~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.. |.|+.+. ++.++|++||+|.+. +|.+|+..|||. .++||+|.|.++..
T Consensus 34 ~~te~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 34 HSTMDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp TCCSHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred CCCHHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 33468899999 79999976 9999876 688999999999999 999999999999 99999999999844
No 160
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=91.97 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhccCCce----EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy17806 5 YDNFFEDVFVECEDKYGEI----EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I----~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a 80 (130)
|+...+||++.| ++||.| .+|.|+.+.+++++|++||+|.+.++|.+|++. ||..++||.|.|..+....+..+
T Consensus 33 ~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~ 110 (123)
T 2dha_A 33 FTATAEEVVAFF-GQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQV 110 (123)
T ss_dssp TTCCHHHHHHHH-HTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHH
T ss_pred CCCCHHHHHHHH-HhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHH
Confidence 556679999999 799986 699999887788999999999999999999996 99999999999998876666655
Q ss_pred hh
Q psy17806 81 CC 82 (130)
Q Consensus 81 ~c 82 (130)
..
T Consensus 111 ~~ 112 (123)
T 2dha_A 111 LN 112 (123)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.28 E-value=9.8e-12 Score=93.11 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
-.++|++.| ++||.|.+|+|+.+ .+|++||+|.+.++|.+|++.|||..+.||+|.|.++.
T Consensus 18 ~~~~L~~~F-~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 18 NCDRVFNVF-CLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CHHHHHHHH-TTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CHHHHHHHH-HhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 457899999 79999999999875 27999999999999999999999999999999999984
No 162
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=1.2e-11 Score=95.31 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=59.2
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~--~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.++|++.| ++||.|..|.|+.+.. +.++|++||+|.+.++|.+|+ .|||+.++|++|.|.|+..
T Consensus 224 t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 224 DENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp CHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred CHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 458899999 7999999999998765 788999999999999999999 9999999999999999843
No 163
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=3.3e-12 Score=88.37 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=53.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC--CEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN--RWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG--r~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||+|.+|.|.+ .+|++||+|.+.++|.+|++.||| ..++||+|.|.++..
T Consensus 39 te~~L~~lF-~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 39 SDSAVLKLA-EPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CSHHHHTTT-TTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CHHHHHHHH-HhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 457899999 7999999999975 379999999999999999999865 569999999999843
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.26 E-value=9.3e-12 Score=82.64 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
+.-.+||++.| ++||.|.++.|+.+.++..+|++||+|.+.++|.+|+. ||..++|++|.|.++
T Consensus 20 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 20 RMDETEIRSFF-ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp TCCHHHHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCHHHHHHHH-HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 33468899999 79999999999988778899999999999999999999 999999999999887
No 165
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.26 E-value=2.4e-12 Score=80.86 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
-.+||++.| ++||.|.++.++.+. ++.++|++||+|.+.++|.+|++. +|..++|++|.+.++
T Consensus 12 t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 12 PEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 468899999 799999999999764 477899999999999999999985 999999999998864
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.26 E-value=3.6e-11 Score=89.51 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+.-.++|++.| ++||.|++|.|+.+. ++.++|++||+|.+.++|.+|++.|||..+.|++|.+.++..
T Consensus 26 ~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 26 DVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp TCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 34468999999 799999999999865 578999999999999999999999999999999999998754
No 167
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=83.35 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|.+|.|+. .++|++||+|.+.++|.+|++.++| +.|++|.|.++..
T Consensus 30 te~~L~~~F-~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 30 SKDVLLRLL-QKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CHHHHHHHH-HTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CHHHHHHHH-HhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 468899999 7999999999983 5689999999999999999999766 6899999999844
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=7.9e-12 Score=84.55 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhccCCce----EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEI----EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I----~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.| ..+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 37 ~t~~~l~~~f-~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 37 VTERDLVSLF-ARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CCHHHHHHHT-HHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CCHHHHHHHH-HHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 3468899999 799999 455554 467899999999999999999999999999999999999854
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=3.6e-11 Score=86.88 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|..|.|+.+. ++.++|++||+|.+.++|.+|+.. +|..++|++|.|.++..
T Consensus 115 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 115 DTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp TCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred CCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 34468899999 799999999999875 578899999999999999999986 89999999999999844
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.25 E-value=2e-11 Score=87.06 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
..+||++.| ++||.|..+ ..++.++|++||+|.+.++|.+|++.|||..++||+|.|.|+..
T Consensus 112 t~~~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 112 TEDELKEVF-EDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp CHHHHHHHC-TTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CHHHHHHHH-HhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 468999999 799999877 44467899999999999999999999999999999999999843
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=1.5e-12 Score=93.00 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 77 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f 77 (130)
|+...+||++.| ++|| |++|.|+.+..++++|++||+|.+.++|.+|+ .|||..++||+|.|..+.....
T Consensus 56 ~~~te~dL~~~F-~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 56 YKATENDIYNFF-SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp TTCCHHHHHHHH-CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCCCHHHHHHHH-HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 456679999999 7999 77999998777889999999999999999999 8999999999999998865443
No 172
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=6.9e-13 Score=90.36 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhccCCceEE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEE--------MNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~--------v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+.-.+||++.| ++||.|.. |.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 18 ~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 18 NVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 44568899999 79999999 8888763 467899999999999999999999999999999999999844
No 173
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.6e-11 Score=94.99 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe------------CCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF------------GGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f------------~GR~I~v~~~~ 73 (130)
+...++|++.| ++||+|++|.|+. .+|++||+|.+.++|+.|+.+|||..+ +|++|.|.++.
T Consensus 154 ~~tEe~L~~~F-~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 154 AQIESRIRFVF-SRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp HHHHHHHHHHH-HTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred cCcHHHHHHHH-HccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEcc
Confidence 34789999999 7999999999986 379999999999999999999999999 89999999995
Q ss_pred C
Q psy17806 74 V 74 (130)
Q Consensus 74 ~ 74 (130)
.
T Consensus 228 ~ 228 (240)
T 3u1l_A 228 E 228 (240)
T ss_dssp -
T ss_pred C
Confidence 4
No 174
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=85.50 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccCCceEEE--------EEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEM--------NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v--------~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...++|+..| ++||.|..+ .+.. ++.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 56 ~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~~--~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 56 HVQEKDLKYIF-GRYVDFSSETQRIMFDIRLMK--EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp TCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEEE--ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred CCCHHHHHHHH-HHhCCcccccccceeeEEecc--CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34468899999 799998763 3333 467899999999999999999999999999999999999843
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.22 E-value=1.1e-10 Score=89.46 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=74.0
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccc
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYE 86 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c~~~~ 86 (130)
..+||++.| ++||.|.++.|+.+. ++.++|++||+|.+.++|.+|+..|||..++|++|.+.++......
T Consensus 108 t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------- 178 (284)
T 3smz_A 108 TQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------- 178 (284)
T ss_dssp CHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--------
T ss_pred CHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--------
Confidence 468899999 799999999999764 5789999999999999999999999999999999999998543221
Q ss_pred cCCCCCCCCcceeeecCCCHHH-----HHHHHhh
Q psy17806 87 MGECTRSGFCNFMHLKPISREL-----RRYLYSR 115 (130)
Q Consensus 87 ~~~c~rg~~Cn~lh~~~~~~~l-----~~~l~~~ 115 (130)
+.....+-++|.++|.++ ..++|..
T Consensus 179 ----~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 179 ----PALLHSRCLCVDRLPPGFNDVDALCRALSA 208 (284)
T ss_dssp ----TTTTSCSEEEEECCCTTCCCHHHHHHHTCS
T ss_pred ----cccCCccEEEEecCCcccCCHHHHHHHhhC
Confidence 111234446787766553 4555653
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=3.7e-11 Score=89.33 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
+...++|++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|+..++. .|+||+|.|.+.
T Consensus 120 ~~t~~~L~~~F-~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 120 DATLDDIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp TCCHHHHHHHH-TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred cCCHHHHHHHH-hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 34568899999 799999999999987788999999999999999999987765 899999999975
No 177
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-12 Score=86.71 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|....+....++.++|++||+|.+.++|.+|++ |||..++|++|.|.++..
T Consensus 29 ~t~~~l~~~F-~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 29 KSVAELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SCHHHHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCHHHHHHHH-HHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 3468899999 79999988333333346789999999999999999999 999999999999999844
No 178
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.6e-11 Score=80.17 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhccCCc-eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-CEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGE-IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-RWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~-I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG-r~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||. |..+.+. .+|++||+|.+.++|.+|++.||| ..++|++|.|.++..
T Consensus 20 ~t~~~l~~~F-~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 20 VTADDLRQLF-GDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCHHHHHHHH-HHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 3468899999 79999 6666663 369999999999999999999999 999999999999844
No 179
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.21 E-value=2.7e-11 Score=82.81 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.-.+||++.| ++||+|..|.|+.+ |++||+|.+.++|.+|++.|||..++|++|.+.+.
T Consensus 28 ~t~~~l~~~F-~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 28 GSWQDLKDHM-REAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp CCTTHHHHHH-GGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCHHHHHHHH-HhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 3457899999 79999999999875 99999999999999999999999999999544443
No 180
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=6.5e-11 Score=78.39 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~-~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++|+ .+.++.+ .++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 27 ~t~~~l~~~F-~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 27 TTEETLKESF-DGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CCHHHHHHTS-TTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cCHHHHHHHh-cCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 3467899888 6775 5566654 3578899999999999999999999999999999999999844
No 181
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.20 E-value=5e-12 Score=88.96 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhccCCceE--EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy17806 5 YDNFFEDVFVECEDKYGEIE--EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~--~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~ 76 (130)
|+...+||++.| ++| .|+ +|.|+.+..++++|++||+|.+.++|.+|++ ++|..++||+|.|..+....
T Consensus 52 ~~~te~dL~~~F-~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 52 FGCTKEEIVQFF-SGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp TTCCHHHHHHHT-TTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHHH
T ss_pred CCCCHHHHHHHH-hcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCHHH
Confidence 556678999999 799 677 9999987778899999999999999999998 58899999999998875443
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.20 E-value=4.6e-11 Score=87.53 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
...+||++.| ++||.|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.+....
T Consensus 40 ~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 40 LGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 3468899999 799999999999765 5678999999999999999999999999999999999887543
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.19 E-value=7.7e-11 Score=90.33 Aligned_cols=60 Identities=15% Similarity=0.357 Sum_probs=54.7
Q ss_pred HHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 12 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 12 i~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
|.+.| ++||.|.+|.|.. ++..+|++||+|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 30 L~~~F-~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 30 LYAIF-SQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHH-hccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 55888 7999999999987 356899999999999999999999999999999999999844
No 184
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.2e-11 Score=77.74 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+...+||++.| ++||.|.+| +....++. ++||+|.+.++|.+|+. |||..++|++|.|.++...
T Consensus 19 ~~t~~~l~~~F-~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 19 GVDSAQLSEYF-LAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCHHHHHHHG-GGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCHHHHHHHH-HhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 34568999999 799999998 33332222 99999999999999999 9999999999999987543
No 185
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=78.07 Aligned_cols=59 Identities=15% Similarity=0.390 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
++++.+|.+.| ++||.|..++|+.+ .+||+|.+.++|.+|++ |||..++||.|+|.+..
T Consensus 26 ~~l~~~L~~~F-~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 26 DALIDELLQQF-ASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHHHH-HhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 57889999999 79999999999985 37999999999999998 99999999999999974
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.16 E-value=7e-11 Score=75.85 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhccC----C-------ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy17806 7 NFFEDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 71 (130)
Q Consensus 7 ~~~eDi~~e~~skf----G-------~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~ 71 (130)
.-.+||++.| ++| | .|.++.+..+ +|++||+|.+.++|.+|+ .|||..++||+|.|+.
T Consensus 18 ~t~~~l~~~F-~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 18 ITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCHHHHHHHH-HHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 3468899999 799 8 9999999864 799999999999999999 9999999999999873
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.16 E-value=9.6e-11 Score=89.81 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~-GR~I~v~~~~ 73 (130)
...++|++.| ++||.|.+|.|..+. +|++||+|.+.++|.+|++.|||..++ |++|.|+|+.
T Consensus 219 ~~~~~l~~~F-~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 219 TNELMLSMLF-NQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCHHHHHHHH-HhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3568999999 799999999999653 599999999999999999999999999 9999999973
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.15 E-value=1.8e-10 Score=83.13 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...+||++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++. +|..++|++|.+.++..
T Consensus 24 ~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 24 ETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp TCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 34568999999 799999999999875 477899999999999999999986 99999999999999844
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.15 E-value=1.3e-10 Score=82.23 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCC---CceeEEEEEecCHHHHHHHHHHhCCCEeC---CeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGD---HLVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~---~~~G~vfV~F~~~e~A~~A~~~lnGr~f~---GR~I~v~~~~ 73 (130)
.-.+||++.| ++||.|.+|.|+.+... .++|++||+|.+.++|.+|++.|||..+. ++++.+.+..
T Consensus 15 ~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 15 WSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp CCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred CCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 3468899999 79999999999986543 78999999999999999999999998775 6788887764
No 190
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.3e-10 Score=82.89 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecC----HHH----HHHHHH--HhCCCEeCCeeEEEEecc
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR----EED----AEKAVN--DLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~----~e~----A~~A~~--~lnGr~f~GR~I~v~~~~ 73 (130)
|..-.++|++.| ++||+|.++.+..+. ++.++|++||+|.+ +++ |.+|+. .|||..++||+|.|.+-+
T Consensus 16 ~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 16 TNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 344567899999 799999999999865 68999999999996 433 889988 899999999999999875
Q ss_pred Ccc
Q psy17806 74 VTD 76 (130)
Q Consensus 74 ~~~ 76 (130)
...
T Consensus 95 ~g~ 97 (136)
T 2j8a_A 95 HSI 97 (136)
T ss_dssp TTH
T ss_pred ccH
Confidence 543
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=2.4e-10 Score=87.53 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh-CCCEeC---CeeEEEEeccCc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFG---GRPVYAELSPVT 75 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~l-nGr~f~---GR~I~v~~~~~~ 75 (130)
...++|++.| ++||.|.+|.|+.+.++.++|++||+|.+.++|.+|+..| +|.++. ||+|.|.++...
T Consensus 108 ~t~~~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 108 VSNELLEQAF-SQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CCHHHHHHHH-GGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCHHHHHHHH-HhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 3468899999 7999999999998877889999999999999999999999 566665 999999998543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=1e-10 Score=85.19 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~-GR~I~v~~~~~ 74 (130)
..++|++.| ++|| .|..+.|..+. +|++||+|.+.++|.+|+..|||..++ |++|.|.|+..
T Consensus 133 ~~~~l~~~f-~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 133 SEEDLKVLF-SSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CHHHHHHHH-HHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CHHHHHHHH-HHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 468999999 7999 99999996542 699999999999999999999999999 99999999843
No 193
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2e-10 Score=78.11 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-C---CCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-G---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 81 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~---~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~ 81 (130)
+...+||++.| ++||.|. +.++.+. + +.++|++||+|.+.++|.+|++.|++ ++|+.+.+...+...-+...
T Consensus 19 ~~te~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~~~~~~~~ 94 (114)
T 2dnl_A 19 DIDEDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSPTIKDKPVQ 94 (114)
T ss_dssp TCCHHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCSSSCSEEEE
T ss_pred CCCHHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCCCcCCCeee
Confidence 44568999999 7999999 7777543 2 57899999999999999999999954 78888888776554444333
Q ss_pred hcccc
Q psy17806 82 CRQYE 86 (130)
Q Consensus 82 c~~~~ 86 (130)
-+.|.
T Consensus 95 v~p~~ 99 (114)
T 2dnl_A 95 IRPWN 99 (114)
T ss_dssp EECCC
T ss_pred ccCCc
Confidence 34443
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.07 E-value=1.6e-10 Score=86.84 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.++|++.| ++||.|.+|.|..+. +|++||+|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 48 te~~L~~~F-~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 48 TPQSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CHHHHHHHH-HHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CHHHHHHHH-HhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 458899999 799999999999864 79999999999999999999999999999999999843
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.07 E-value=2.4e-10 Score=87.98 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...++|++.| ++|| .|.+|.|+.+..+.++|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 129 ~t~~~l~~~f-~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 129 YTQRNIRDLL-QDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp CCHHHHHHHH-HHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHH-HHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3468899999 7999 99999999876677899999999999999999999999999999999999854
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.06 E-value=1.3e-10 Score=84.65 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=56.7
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
-.++|++.| ++||.|.+|.|+.+. +|++||+|.+.++|.+|+..|||..+.|++|.+.++..
T Consensus 17 ~~~~l~~~F-~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 17 TPQSLFILF-GVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CHHHHHHHH-HTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CHHHHHHHH-HhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 358899999 799999999999863 79999999999999999999999999999999999843
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.04 E-value=4.2e-10 Score=84.55 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=55.7
Q ss_pred HHHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEeccC
Q psy17806 8 FFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSPV 74 (130)
Q Consensus 8 ~~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~-GR~I~v~~~~~ 74 (130)
..++|++.| ++|| .|..|.|... .+|++||+|.+.++|.+|++.|||..++ |++|.|.|+..
T Consensus 164 t~~~l~~~f-~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 164 SEEDLKVLF-SSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CHHHHHHHH-HTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CHHHHHHHH-HHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 468999999 7999 9999999643 2699999999999999999999999999 99999999843
No 198
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.04 E-value=4.2e-10 Score=73.69 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe--CCeeEEEEeccC
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSPV 74 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f--~GR~I~v~~~~~ 74 (130)
++.-.+||++.| ++||.|.++.|+.+ ++|++||+|.+.++|. .|+|..+ .|++|.+.++..
T Consensus 21 ~~~te~~L~~~F-~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 21 EDMTAEELQQFF-CQYGEVVDVFIPKP----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp TTCCHHHHHHHH-TTTSCEEEEECCSS----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC-
T ss_pred CCCCHHHHHHHH-hccCCEEEEEEeeC----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCC
Confidence 344568999999 79999999999974 6899999999999988 3677765 599999998843
No 199
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3.8e-10 Score=76.08 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
++++.+|.+.| +.||.|..+++..+ .+||+|.+.++|.+|++ |||..++||.|+|.+-
T Consensus 35 ~~l~~~L~~~F-~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTL-GSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHH-HHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHH-HHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 46789999999 79999999999985 39999999999999998 9999999999999874
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=1.3e-09 Score=88.20 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe---CCe--eEEEEeccCccchh
Q psy17806 5 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGR--PVYAELSPVTDFRE 79 (130)
Q Consensus 5 ~d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f---~GR--~I~v~~~~~~~f~~ 79 (130)
|+.-++||++.| ++||+|.+|.++. .+|++||+|.+.++|++|++.|||..+ .|+ +|++.|+....+
T Consensus 30 ~~~te~~L~~~F-~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~-- 101 (345)
T 3tht_A 30 NGVSRNQLLPVL-EKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW-- 101 (345)
T ss_dssp GTCCHHHHHHHH-HTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEE--
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecccc--
Confidence 455679999999 7999999998865 379999999999999999999999988 345 788888843322
Q ss_pred hhhcccccCCCCCCCCcceeeecCCCHHHHHHHHhhcc
Q psy17806 80 ACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRK 117 (130)
Q Consensus 80 a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~~~~ 117 (130)
..+....-+.| =+++-.-++.+-.+.|.....
T Consensus 102 ---~~~~~~~lp~G---l~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 102 ---KELRPQALPPG---LMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp ---EEEECCSCCTT---EEEETTCSCHHHHHHHHTTCC
T ss_pred ---cccccccCCCc---eEEEcCcCCHHHHHHHHHhcc
Confidence 22223345544 333445588888888876544
No 201
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.00 E-value=7.1e-10 Score=78.10 Aligned_cols=66 Identities=12% Similarity=0.276 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~-~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+...++|++.| ++||.|.+|.|+.+. ++.++|++||+|.+.++|.+|++. +..++|++|.+.++..
T Consensus 14 ~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 14 DTTEDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp TCCHHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CCCHHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 34468899999 799999999999874 578899999999999999999984 6799999999888743
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.99 E-value=9.5e-10 Score=84.19 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 6 d~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+...+||++.| ++||.|.+|.|..+ +|++||+|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 33 ~~te~~l~~~F-~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 33 DITEEDFKRLF-ERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TCCHHHHHHHT-GGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCHHHHHHHH-HhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34468999999 79999999999764 6999999999999999999999999999999999884
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.94 E-value=1.5e-09 Score=81.12 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhccCCce--EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCe----eEEEEec
Q psy17806 7 NFFEDVFVECEDKYGEI--EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR----PVYAELS 72 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I--~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR----~I~v~~~ 72 (130)
...+||++.| ++||.| .+++|..+. +..+|++||+|.+.++|.+|+..|||..++|+ |+++.|+
T Consensus 135 ~t~~~L~~~F-~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 135 VTEENFFEIC-DELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCHHHHHHHH-HHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCHHHHHHHH-HhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3468999999 799999 899998765 34469999999999999999999999999997 6666553
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.92 E-value=1.8e-10 Score=82.09 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
...+||++.| ++||.|..+.|....++.++|++||+|.+.++|.+|+ .|||..+.|++|.+.++..
T Consensus 25 ~t~~~l~~~f-~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 25 KSVAELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SCHHHHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred CCHHHHHHHH-HHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 3467899999 6999887744444444678899999999999999999 5999999999999999854
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.91 E-value=2.4e-09 Score=75.69 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhccC----C-------ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 7 NFFEDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 7 ~~~eDi~~e~~skf----G-------~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
.-.+||++.| ++| | .|.++.+..+ +|++||+|.+.++|.+|+ .|||..+.|++|.+.+..
T Consensus 16 ~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 16 ITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp CCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred cCHHHHHHHH-HHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 3468899999 799 6 7888877653 799999999999999999 899999999999999763
No 206
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1.8e-09 Score=69.73 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEe--CCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f--~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++||.|.+|.|+.+ ++|++||+|.+.++|++ |+|..+ .|++|.+.++..
T Consensus 17 ~te~~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 17 MTEDELREFF-SQYGDVMDVFIPKP----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCHHHHHHHS-TTTSCCCEEECCSS----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCC
T ss_pred CCHHHHHHHH-HHcCCeeEEEEecC----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCC
Confidence 3468899999 79999999999875 58999999999999975 455544 999999998844
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.79 E-value=7.8e-09 Score=74.57 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhccC----C-------ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKY----G-------EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skf----G-------~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
.-.+||++.| ++| | .|.++.+.. .+|++||+|.+.++|.+|+ .|||..+.|++|.+.++..
T Consensus 16 ~te~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 16 ITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp CCHHHHHHHH-HHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred CCHHHHHHHH-HHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 3468899999 799 4 666666643 4799999999999999999 8999999999999998743
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=1.9e-06 Score=60.15 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecC-HHHHHHHHHHhC--CCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLN--NRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~-~e~A~~A~~~ln--Gr~f~GR~I~v~~~ 72 (130)
..+||++.| ++||+|..|.+..+.. .+||+|.+ +++|.+|++.|| |..+.|..++++..
T Consensus 32 sredLke~F-~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 32 CREDLHILF-SNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CHHHHHHHT-CSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CHHHHHHHH-HhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 468999999 7999999999987532 59999999 899999999995 78899999999887
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=6.7e-05 Score=51.84 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHHHhhccC-----CceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 11 DVFVECEDKY-----GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 11 Di~~e~~skf-----G~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
-|+..+ ..| |.|.+|.+..+. |=|.|+|.+...|.+|.-+|||..|+||+|.|.-.
T Consensus 37 rIr~lv-e~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 37 LICQFL-QEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHH-HHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred HHHHHH-hhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 356666 478 999999998763 67889999999999999999999999999999754
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.0005 Score=47.78 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred HHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCC-eeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G-R~I~v~~~ 72 (130)
....|..+| ++||.|++...+.+ ...++|+|.+..+|++|+. .||..++| -.|-|..+
T Consensus 36 ~~~~VL~~F-~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 36 SASYILLQF-AQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GHHHHHHHH-HTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHHHHHHHH-HhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 356788999 79999999998433 3589999999999999998 69999986 55555543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.0006 Score=46.35 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
++.+.++..| ..|+++......+. -..+-|.|.++++|.+|-..|+|..|.|+.+.+.|...
T Consensus 22 ~lk~~~e~Lf-~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 22 ETRAKFESLF-RTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp THHHHHHHHH-HTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHHH-HhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4557788888 69999988776653 34889999999999999999999999999999999863
No 212
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.05 E-value=0.0014 Score=45.60 Aligned_cols=81 Identities=10% Similarity=-0.022 Sum_probs=52.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh-CCCEeCCeeEEEEeccCccchhhhhc-ccccCCCCCCCCcceeeecCC----CHH
Q psy17806 34 DHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPVTDFREACCR-QYEMGECTRSGFCNFMHLKPI----SRE 107 (130)
Q Consensus 34 ~~~~G~vfV~F~~~e~A~~A~~~l-nGr~f~GR~I~v~~~~~~~f~~a~c~-~~~~~~c~rg~~Cn~lh~~~~----~~~ 107 (130)
..++|.++|+|.+.++|.+|++.| ||..++| +|.+.++.........-. ......-.......-++|.++ +++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 999998754322111100 000111111223445577654 455
Q ss_pred HHHHHHhh
Q psy17806 108 LRRYLYSR 115 (130)
Q Consensus 108 l~~~l~~~ 115 (130)
-.+++|..
T Consensus 89 ~l~~~F~~ 96 (150)
T 2i2y_A 89 ELERAFGY 96 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56677764
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.82 E-value=0.0039 Score=43.40 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=29.4
Q ss_pred EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE
Q psy17806 25 EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 61 (130)
Q Consensus 25 ~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~ 61 (130)
++.|..+.. .++|++||+|.+.++|.+|++.+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 455666543 689999999999999999999998753
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.36 E-value=0.0036 Score=44.17 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHHHhhccCCceEE-EEEeeCCC------------C--CceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 8 FFEDVFVECEDKYGEIEE-MNVCDNLG------------D--HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 8 ~~eDi~~e~~skfG~I~~-v~v~~~~~------------~--~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
...-|..+| ++||.|.+ +.+.++.. + .....+.|+|.+..+|.+|+. -||+.|+|-.|-|..+
T Consensus 19 ~~~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 19 MANQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp GHHHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred HHHHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 445688999 79999977 32222100 0 124589999999999999997 8999999998888877
Q ss_pred c
Q psy17806 73 P 73 (130)
Q Consensus 73 ~ 73 (130)
.
T Consensus 97 ~ 97 (132)
T 3p3d_A 97 T 97 (132)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.09 E-value=0.0078 Score=38.23 Aligned_cols=30 Identities=20% Similarity=0.628 Sum_probs=23.5
Q ss_pred ccchhhhhcccccCCCCCCCCcceeeecCC
Q psy17806 75 TDFREACCRQYEMGECTRSGFCNFMHLKPI 104 (130)
Q Consensus 75 ~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~ 104 (130)
...+..+|+-|..|.|.+|+.|.|+|...+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 445667888888888888888888887654
No 216
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.07 E-value=0.0056 Score=38.59 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=25.4
Q ss_pred cCccchhhhhcccccCCCCCCCCcceeeecCC
Q psy17806 73 PVTDFREACCRQYEMGECTRSGFCNFMHLKPI 104 (130)
Q Consensus 73 ~~~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~ 104 (130)
+.......+|+-|..|.|.+|+.|.|.|...+
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 34456677899999999999999999998654
No 217
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.80 E-value=0.0056 Score=38.26 Aligned_cols=25 Identities=36% Similarity=0.838 Sum_probs=20.9
Q ss_pred hhhhcccccCCCCCCC-CcceeeecC
Q psy17806 79 EACCRQYEMGECTRSG-FCNFMHLKP 103 (130)
Q Consensus 79 ~a~c~~~~~~~c~rg~-~Cn~lh~~~ 103 (130)
.++|+.|..|.|.||+ .|.|.|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 4579999999999998 599999653
No 218
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.62 E-value=0.012 Score=38.23 Aligned_cols=26 Identities=31% Similarity=0.802 Sum_probs=18.3
Q ss_pred hhhhhcccccCCCCCCC-CcceeeecC
Q psy17806 78 REACCRQYEMGECTRSG-FCNFMHLKP 103 (130)
Q Consensus 78 ~~a~c~~~~~~~c~rg~-~Cn~lh~~~ 103 (130)
+..+|+.|..|.|.||+ .|.|+|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 44567777777777775 777777754
No 219
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.42 E-value=0.018 Score=35.94 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=26.8
Q ss_pred cCccchhhhhcccc-cCCCCCCCCcceeeecC
Q psy17806 73 PVTDFREACCRQYE-MGECTRSGFCNFMHLKP 103 (130)
Q Consensus 73 ~~~~f~~a~c~~~~-~~~c~rg~~Cn~lh~~~ 103 (130)
+...|....|+.|. .|.|..|..|.|+|...
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 55678889999995 88999999999999865
No 220
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.38 E-value=0.0097 Score=37.50 Aligned_cols=33 Identities=33% Similarity=0.732 Sum_probs=26.3
Q ss_pred cCccchhhhhcccccCCCCCCCCcceeeecCCCHHHHH
Q psy17806 73 PVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRR 110 (130)
Q Consensus 73 ~~~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~ 110 (130)
|..+| ..|..|..|.|+.|+.|.|.|=. ++|..
T Consensus 16 P~~k~--~LC~~~~~G~C~~G~~C~FAHG~---~ELr~ 48 (69)
T 2d9m_A 16 PTGYF--SICDRYMNGTCPEGNSCKFAHGN---AELHE 48 (69)
T ss_dssp CCSCC--SBCHHHHHSCCSSCSSCSSBSSH---HHHHH
T ss_pred CCCCc--ccCcccCcCCCCCCCccCCcCCH---HHHhh
Confidence 44456 78999999999999999999964 45554
No 221
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.49 E-value=0.017 Score=37.97 Aligned_cols=27 Identities=37% Similarity=0.776 Sum_probs=20.4
Q ss_pred hhhhhcccccCCCCCCC-CcceeeecCC
Q psy17806 78 REACCRQYEMGECTRSG-FCNFMHLKPI 104 (130)
Q Consensus 78 ~~a~c~~~~~~~c~rg~-~Cn~lh~~~~ 104 (130)
+..+|+.|..|.|.||+ .|.|+|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 35578888888888887 8888887553
No 222
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=93.45 E-value=0.019 Score=35.73 Aligned_cols=27 Identities=30% Similarity=0.725 Sum_probs=23.4
Q ss_pred ccchhhhhcccccCCCCCCCCcceeeec
Q psy17806 75 TDFREACCRQYEMGECTRSGFCNFMHLK 102 (130)
Q Consensus 75 ~~f~~a~c~~~~~~~c~rg~~Cn~lh~~ 102 (130)
...+..+|..|..|.|.+| .|.|+|..
T Consensus 38 ~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 38 NDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred cCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 4566789999999999998 99999974
No 223
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.00 E-value=0.044 Score=36.47 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=28.1
Q ss_pred ccchhhhhcccccCCCCCCCCcceeeecCCCHHHHHHHHhhc
Q psy17806 75 TDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRR 116 (130)
Q Consensus 75 ~~f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~~~~ 116 (130)
...+..+|..|..|.|.+| .|.|+|+ +.+|...+-..|
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~---~~~l~~~~~~~~ 89 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHP---PAHLQAKIKAAQ 89 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCC---CHHHHHHHHHHH
T ss_pred cCCccccchhhccCCCCCC-CcCccCC---hHHHHHHHHHHH
Confidence 3467778999999999997 8999996 446666554433
No 224
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=92.85 E-value=0.037 Score=36.77 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=17.1
Q ss_pred hhhcccc-cCCCCCCCCcceeeecC
Q psy17806 80 ACCRQYE-MGECTRSGFCNFMHLKP 103 (130)
Q Consensus 80 a~c~~~~-~~~c~rg~~Cn~lh~~~ 103 (130)
..|.-|. .|.|..|..|.|+|...
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCcCcccCCcCCCCCCCcccCCCC
Confidence 4566673 67888888888888743
No 225
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.64 E-value=0.0089 Score=39.91 Aligned_cols=27 Identities=30% Similarity=0.756 Sum_probs=23.4
Q ss_pred hhhhhcccccCCCCCCC-CcceeeecCC
Q psy17806 78 REACCRQYEMGECTRSG-FCNFMHLKPI 104 (130)
Q Consensus 78 ~~a~c~~~~~~~c~rg~-~Cn~lh~~~~ 104 (130)
+..+|+.|..|.|.||+ .|.|.|....
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 45689999999999998 7999999754
No 226
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.36 E-value=1.5 Score=28.57 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHHHHHHhhccCCceEEEEEeeCC---CCCceeEEEEEecCHHHHHHHHHHhCCCEe-CC----eeEEEEeccC
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNL---GDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GG----RPVYAELSPV 74 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~---~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f-~G----R~I~v~~~~~ 74 (130)
+++..+.+ +.+.++.-...+... ..+.-..+||.|.+.+++..-.+.++|..| |. -+-.|+|+|-
T Consensus 15 eeeF~~~l-~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 15 KEQLQEHL-QPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp HHHHHHHH-CSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred HHHHHHHh-cCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 35566666 677777666655432 235568999999999999999999999988 22 2445677653
No 227
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=89.75 E-value=0.2 Score=33.11 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=23.4
Q ss_pred chhhhhcccccCCCCCCCCcceeeec
Q psy17806 77 FREACCRQYEMGECTRSGFCNFMHLK 102 (130)
Q Consensus 77 f~~a~c~~~~~~~c~rg~~Cn~lh~~ 102 (130)
+....|+-|..|.|.+|+.|.|+|..
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~~ 36 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHGD 36 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCCC
Confidence 56778999999999999999999983
No 228
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=89.49 E-value=0.13 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=25.2
Q ss_pred chhhhhcccccCCCCCCCCcceeeecCCCHHHHHHH
Q psy17806 77 FREACCRQYEMGECTRSGFCNFMHLKPISRELRRYL 112 (130)
Q Consensus 77 f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l 112 (130)
-...+|..|..|.|.|+ .|.|+|+ +.+|...+
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~---~~~l~~~~ 72 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHP---PPHLKTQL 72 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCC---CHHHHHHH
T ss_pred CceeehhHhhhccccCC-CcceeCC---hHHHHHHH
Confidence 45678999999999997 8999997 44555544
No 229
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.19 E-value=0.81 Score=30.57 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=33.6
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 58 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln 58 (130)
.||.+.| +.||.|.=-+|-+ --+||.|.+++.|..|++.++
T Consensus 30 ~DI~~lF-s~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLF-SAFGNIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHH-TTTCSCCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHh-hccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 6899999 7999765555543 479999999999999999874
No 230
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=88.27 E-value=0.69 Score=30.99 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=32.8
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 58 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~ln 58 (130)
.||...| +.||.|.=-+|-+ .-+||.|.+++.|..|++.++
T Consensus 20 ~Di~~lF-s~fggv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLF-SAFGNIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHT-TTSEEEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHH-hccCCEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 6899999 7999554444432 479999999999999999875
No 231
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=87.89 E-value=0.086 Score=32.98 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=31.8
Q ss_pred HhCCCEeCCeeEEEEec-cCccchhhhhccccc-CCCCCCCCcceeeecCCC
Q psy17806 56 DLNNRWFGGRPVYAELS-PVTDFREACCRQYEM-GECTRSGFCNFMHLKPIS 105 (130)
Q Consensus 56 ~lnGr~f~GR~I~v~~~-~~~~f~~a~c~~~~~-~~c~rg~~Cn~lh~~~~~ 105 (130)
-|.|.--.|-. +.|+ +.+.-+...|.-|.. |.|.+ +.|.|+|+.+.+
T Consensus 22 fl~G~C~~G~~--C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 22 WLRGLCKKGDQ--CEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp HHTTCCCCGGG--SSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred HhcCCCCCCCC--CCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 34444444433 5555 323345668999999 99999 999999998754
No 232
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=87.82 E-value=0.1 Score=32.43 Aligned_cols=27 Identities=22% Similarity=0.797 Sum_probs=0.0
Q ss_pred cchhhhhcccc-cCCCCCCCCcceeeec
Q psy17806 76 DFREACCRQYE-MGECTRSGFCNFMHLK 102 (130)
Q Consensus 76 ~f~~a~c~~~~-~~~c~rg~~Cn~lh~~ 102 (130)
.+....|..|. .|.|+.|..|.|+|..
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp ----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 35567898776 7799999999999975
No 233
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=87.04 E-value=0.14 Score=39.13 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=25.8
Q ss_pred hhcccccCCCCCCCCcceeeecCCCHHHH
Q psy17806 81 CCRQYEMGECTRSGFCNFMHLKPISRELR 109 (130)
Q Consensus 81 ~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~ 109 (130)
+|--|-.|.|.+|..|.|+|-++.+.++.
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~lPt~~d~~ 100 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHHIPDEEDIG 100 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBSCCCHHHHH
T ss_pred EcCccccCCCCCCCCCCccCCCCCccchh
Confidence 78888899999999999999988877775
No 234
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=86.50 E-value=0.24 Score=32.36 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=26.2
Q ss_pred chhhhhcccccCCCCCCCCcceeeecCCCHHHHHHHH
Q psy17806 77 FREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 113 (130)
Q Consensus 77 f~~a~c~~~~~~~c~rg~~Cn~lh~~~~~~~l~~~l~ 113 (130)
-+...|..|..|.|.|+ .|.|+|+ +.+|...|.
T Consensus 49 ~~~~vC~dflkG~C~r~-~Cky~H~---~~hl~~~~~ 81 (89)
T 2rpp_A 49 GRVIACFDSLKGRCSRE-NCKYLHP---PTHLKTQLE 81 (89)
T ss_dssp TBEEBCHHHHHTCCCCT-TCCSBCC---CHHHHHHHH
T ss_pred CceeeehhhhhCcCCCC-CcceecC---HHHHHHHHH
Confidence 35778999999999996 8999997 456666543
No 235
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.53 E-value=0.22 Score=31.34 Aligned_cols=26 Identities=35% Similarity=0.838 Sum_probs=22.3
Q ss_pred hhhhhccccc-CCCCCCCCcceeeecCC
Q psy17806 78 REACCRQYEM-GECTRSGFCNFMHLKPI 104 (130)
Q Consensus 78 ~~a~c~~~~~-~~c~rg~~Cn~lh~~~~ 104 (130)
+..+|.-|.. |.|. |+.|.|+|+...
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 4567999998 9999 899999999764
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=81.59 E-value=1.2 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=29.3
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 61 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~ 61 (130)
.|.++.++. +++|++||+=.+..+...|++.+.+-+
T Consensus 40 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 488888775 479999999999999999988776543
No 237
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=78.11 E-value=1.1 Score=37.43 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q psy17806 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 55 (130)
Q Consensus 9 ~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~ 55 (130)
+.++.+-| ++||.|.++...+..+ -++-|+|.+.+++..++.
T Consensus 66 ~~~l~~y~-~~~g~i~~~~~~~~~g----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 66 ENKFLKYL-SQFGPINNHFFYESFG----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp -CHHHHHH-GGGSCCCCEEEECSSS----EEEEEECC---CCHHHHS
T ss_pred HHHHHHHH-HhcCCcceEEEEccCC----eEEEEEeCCHHHHHHHHh
Confidence 45788899 7999999999987531 589999999998886643
No 238
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=77.99 E-value=3 Score=27.53 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=31.8
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCEeCC-----eeEEEEeccC
Q psy17806 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSPV 74 (130)
Q Consensus 35 ~~~G~vfV~F~~~e~A~~A~~~lnGr~f~G-----R~I~v~~~~~ 74 (130)
..-..|||.|.+.++...-.+.++|..|-. -+..|+|+|-
T Consensus 51 ~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 51 HLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp SCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCC
Confidence 345789999999999999999999998822 2555777763
No 239
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=75.79 E-value=6.4 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.2
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 23 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 23 I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
|.++.++.. ..|++||++...++...+++.+.|
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 778888753 679999999999999999888776
No 240
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=71.49 E-value=2.5 Score=31.36 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=36.3
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy17806 23 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 78 (130)
Q Consensus 23 I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~ 78 (130)
|.+|.++. +++|++||+=.+..+...|++.+.+-+. .++ .+.|..+.-
T Consensus 139 I~Si~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~-~~~---~lVPi~Em~ 186 (200)
T 2exu_A 139 ILSIFQRD----NYTGRIYIEAPKQSVIEKFCNGVPDIYI-SQK---LLIPVQELP 186 (200)
T ss_dssp CCEEECCT----TSTTEEEEECSCHHHHHHHHTTCTTEEE-EEE---EECCGGGHH
T ss_pred EEEEEecC----CCcEEEEEEECCHHHHHHHHhhhhhhhc-CCc---eEecHHHhH
Confidence 77777664 5799999999999999999999988643 333 466665543
No 241
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=68.18 E-value=0.76 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=24.1
Q ss_pred chhhhhcccc-cCCCCCCCCcceeeecCCCH
Q psy17806 77 FREACCRQYE-MGECTRSGFCNFMHLKPISR 106 (130)
Q Consensus 77 f~~a~c~~~~-~~~c~rg~~Cn~lh~~~~~~ 106 (130)
....+|.+|- -|-|+.|..|++.|-..+|.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCCC
Confidence 3566888876 35899999999999988764
No 242
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.01 E-value=27 Score=23.19 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=34.3
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 20 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 20 fG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
=|.|.+|.... +-+.|+|.+.+.|++.++ -.-..+.|-+|.|.-++.
T Consensus 37 GG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 37 GGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred CceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 36898888754 567999999999987765 234667778888765533
No 243
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=54.01 E-value=11 Score=25.98 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=28.8
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC
Q psy17806 23 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60 (130)
Q Consensus 23 I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr 60 (130)
|.++.++.. ..|++||++...++...+++.+.|-
T Consensus 33 i~~v~vp~~----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 778888752 5799999999999999999988874
No 244
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.00 E-value=21 Score=21.33 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=29.7
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~ 72 (130)
.|-.|.|.. .+.||+-.. +.|..+++.|++..+.|+.+.++.+
T Consensus 32 ~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 456666654 366777666 4588899999999999999988764
No 245
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=47.10 E-value=60 Score=21.80 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=32.0
Q ss_pred CCceEEEEEeeCCCCCceeEEEEE-ecCHHHHHHHHHHhCCC-----EeCCeeEEEEeccCccc
Q psy17806 20 YGEIEEMNVCDNLGDHLVGNVYIK-FRREEDAEKAVNDLNNR-----WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 20 fG~I~~v~v~~~~~~~~~G~vfV~-F~~~e~A~~A~~~lnGr-----~f~GR~I~v~~~~~~~f 77 (130)
+=.|.+|.|..+ -....|||. |-+.++...++..|+.- ..=|+.+...+.|+-.|
T Consensus 43 ~vtVt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F 103 (129)
T 2e7g_A 43 NVELSKVSLTPD---FSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVF 103 (129)
T ss_dssp TCCEEEEEECTT---SCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCSCCCCEEE
T ss_pred eeEEEEEEECCC---CcEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHHhhcCCccCCeEEE
Confidence 347888888765 346789998 76655444444444431 22334445556666555
No 246
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=43.93 E-value=7.8 Score=21.51 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=9.9
Q ss_pred CCCCCCCccee
Q psy17806 89 ECTRSGFCNFM 99 (130)
Q Consensus 89 ~c~rg~~Cn~l 99 (130)
.|++|-.|||.
T Consensus 26 ~C~rg~~Cn~f 36 (41)
T 1hy9_A 26 DCPRGTSCNSF 36 (41)
T ss_dssp BCCTTCCBCTT
T ss_pred CCCCCCcchhh
Confidence 79999999994
No 247
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=40.69 E-value=41 Score=28.66 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=38.2
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~ 73 (130)
+.+|-|+++.+---+.......+.+.|.+.++|..|+..+-.. .-.+..+++.+
T Consensus 369 GTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~--~~~psa~El~D 422 (658)
T 4bby_A 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQ--RCAPASIRLMD 422 (658)
T ss_dssp TSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHT--TCCCSEEEEEC
T ss_pred CcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHc--CCCcccccccc
Confidence 5789999998875433455678899999999999999877443 11244455543
No 248
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=39.36 E-value=46 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.428 Sum_probs=32.4
Q ss_pred HHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q psy17806 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 59 (130)
Q Consensus 10 eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG 59 (130)
.||.+.| +.||.| +|.-..+ -.+||.|.+.+.|..++++++.
T Consensus 454 ~~i~~~f-s~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLF-SAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHG-GGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHH-HhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 5888888 799965 3333332 4699999999999999999863
No 249
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.88 E-value=63 Score=20.57 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=20.1
Q ss_pred ceEEEEEeeC-CCCCceeEEEEEecC
Q psy17806 22 EIEEMNVCDN-LGDHLVGNVYIKFRR 46 (130)
Q Consensus 22 ~I~~v~v~~~-~~~~~~G~vfV~F~~ 46 (130)
+|++|+|-.- ..++++|+|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 6788888764 357899999999975
No 250
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=30.28 E-value=39 Score=22.63 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCeeEEEEec-cCccchhhhh--cccccC-----CCCCCCCcceeeecCCCHHHHHHHHh
Q psy17806 63 GGRPVYAELS-PVTDFREACC--RQYEMG-----ECTRSGFCNFMHLKPISRELRRYLYS 114 (130)
Q Consensus 63 ~GR~I~v~~~-~~~~f~~a~c--~~~~~~-----~c~rg~~Cn~lh~~~~~~~l~~~l~~ 114 (130)
+|+.++=+.. |.++...+.- ++|..+ .--.-..|+|=|+...|+++...+-.
T Consensus 36 ~G~~MHFDVlv~~~n~eka~~yaK~yL~siG~~~~~vT~~eC~FCHsE~A~~ev~~~I~~ 95 (109)
T 2hfq_A 36 DGHVMHFDVFTDVRDDKKAIEFAKQWLSSIGEEGATVTSEECRFCHSEKAPDEVIEAIKQ 95 (109)
T ss_dssp SSCCEEEEEEESCCCHHHHHHHHHHHHHHHTCCCSCCCTTTBCCCEEEECCHHHHHHHHH
T ss_pred CCCEEEEEEEeCCcCHHHHHHHHHHHHHhcCcCCCccchhhCcccccccCCHHHHHHHHH
Confidence 6777776655 6666555532 455443 22333689999999999999887643
No 251
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=30.28 E-value=76 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=20.0
Q ss_pred ceEEEEEeeC-CCCCceeEEEEEecC
Q psy17806 22 EIEEMNVCDN-LGDHLVGNVYIKFRR 46 (130)
Q Consensus 22 ~I~~v~v~~~-~~~~~~G~vfV~F~~ 46 (130)
+|++|+|-.- ..++++|+|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 6888888763 347899999999975
No 252
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.79 E-value=85 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=19.8
Q ss_pred ceEEEEEeeC-CCCCceeEEEEEecC
Q psy17806 22 EIEEMNVCDN-LGDHLVGNVYIKFRR 46 (130)
Q Consensus 22 ~I~~v~v~~~-~~~~~~G~vfV~F~~ 46 (130)
+|++|+|-.- ..++++|+|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 5778888753 357899999999975
No 253
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=28.78 E-value=82 Score=20.34 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=21.7
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecC-HHHHHHHHHHhC
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLN 58 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~-~e~A~~A~~~ln 58 (130)
.|.+|.|..+ -....|||.+-. .++...++++|+
T Consensus 37 tVt~V~vs~D---l~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 37 TFSRVELSKD---KRYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp CEEEEEECTT---SCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred EEEEEEECCC---CCEEEEEEEeCCChhhHHHHHHHHH
Confidence 5667777654 456889998774 555555555554
No 254
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=28.31 E-value=87 Score=25.51 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=39.6
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 75 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~~ 75 (130)
+.+|-|+++.+--.+.......+++.|.+.++|..|+..+... .+..+..+++.+..
T Consensus 212 GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~-~g~~p~a~El~d~~ 268 (476)
T 3pm9_A 212 GTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGE-AAGNLTSFELIAET 268 (476)
T ss_dssp TSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHH-HGGGEEEEEEEEHH
T ss_pred CCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHh-cCCCceEEEecCHH
Confidence 4678899998875433445667889999999999998877321 12345566776543
No 255
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=25.96 E-value=1.2e+02 Score=20.30 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=30.5
Q ss_pred ceEEEEEeeCCCCCceeEEEEEecC---HHHHHHHHHHhCCC-----EeCCeeEEEEeccCccc
Q psy17806 22 EIEEMNVCDNLGDHLVGNVYIKFRR---EEDAEKAVNDLNNR-----WFGGRPVYAELSPVTDF 77 (130)
Q Consensus 22 ~I~~v~v~~~~~~~~~G~vfV~F~~---~e~A~~A~~~lnGr-----~f~GR~I~v~~~~~~~f 77 (130)
.|.+|.|.. +-....|||.+.. .++...+++.|+.- ..=|+.+...+.|+-.|
T Consensus 36 tVt~V~vS~---Dl~~AkVyvs~~g~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F 96 (128)
T 1jos_A 36 TVSDVEVSS---DLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRF 96 (128)
T ss_dssp EEEEEEECT---TSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSCCEEEE
T ss_pred EEeEEEECC---CCCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcCCCcCCeEEE
Confidence 455565554 4457899998874 55555555555432 22344555556666555
No 256
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=25.78 E-value=17 Score=26.59 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=36.7
Q ss_pred EEecCHH---HHHHHHHHhCCCEeCCeeEEEEeccCccchhhhh-c-ccccCCCCCCCCcceeeecC
Q psy17806 42 IKFRREE---DAEKAVNDLNNRWFGGRPVYAELSPVTDFREACC-R-QYEMGECTRSGFCNFMHLKP 103 (130)
Q Consensus 42 V~F~~~e---~A~~A~~~lnGr~f~GR~I~v~~~~~~~f~~a~c-~-~~~~~~c~rg~~Cn~lh~~~ 103 (130)
|-|.+.+ .|.+.++.|...+ +++|.+++.|...|..|-= . +|...+ .+++|.=.|...
T Consensus 123 Ify~~~~Q~~~A~~~~~~l~~~~--~~~IvTeI~p~~~Fy~AE~yHQ~Yl~kn--P~~Yccp~h~~r 185 (187)
T 3pim_A 123 LFAHSDADLKELAKIKEEWQPKW--GNKIATVIEPIKNFYDAEEYHQLYLDKN--PQGYACPTHYLR 185 (187)
T ss_dssp EEESSHHHHHHHHHHHHHHGGGG--TTCBCCEEEEEEEEEEHHHHHHHHCTTC--TTCTTCCSCCCC
T ss_pred eEeCCHHHHHHHHHHHHHHHHHh--CCCcEEEEeeCCCeeecHHHHHHHHHHC--CCCCCCCccccc
Confidence 4455554 4666677888764 7889999988888887753 2 243322 246776556543
No 257
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.63 E-value=79 Score=25.85 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 54 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~ 54 (130)
+.+|-|+++.+---+.......+.+.|.+.++|.+|+
T Consensus 225 ~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 225 ANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp SSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred CceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 3689999998875433445667889999988776644
No 258
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=24.40 E-value=60 Score=20.66 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=23.4
Q ss_pred CceEEEEEeeCCCCCceeEEEEEecC-HHHHHHHHHHhCC
Q psy17806 21 GEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLNN 59 (130)
Q Consensus 21 G~I~~v~v~~~~~~~~~G~vfV~F~~-~e~A~~A~~~lnG 59 (130)
=.|.+|.|..+ -....|||.+-. .+++.+|++...|
T Consensus 31 vtVt~V~vs~D---l~~AkVyvs~~~~~~~~~~~L~~a~g 67 (95)
T 2dyj_A 31 LTVEAVRLSKD---GSVLSVYVEAFREEEGALRALSRAER 67 (95)
T ss_dssp CEEEEEEECTT---SSEEEEEEECSSCHHHHHHHHHHTHH
T ss_pred EEEEEEEECCC---CCEEEEEEEeCCCHHHHHHHHHHhHH
Confidence 35667777654 456889998765 5566666665555
No 259
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=22.96 E-value=88 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=28.0
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 55 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~ 55 (130)
+.+|-|.++.+---+.......+++.|.+.++|..|+.
T Consensus 257 GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 257 SNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp SSSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHH
T ss_pred CcEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHH
Confidence 46899999988753333445678899999998877654
No 260
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=21.48 E-value=80 Score=19.00 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=11.3
Q ss_pred CCceeEEEEEecC
Q psy17806 34 DHLVGNVYIKFRR 46 (130)
Q Consensus 34 ~~~~G~vfV~F~~ 46 (130)
+.+.|.++|+|++
T Consensus 30 ps~~G~~wiKyED 42 (62)
T 1igq_A 30 PPAEGYAWLKYED 42 (62)
T ss_dssp CSSTTEEEEEETT
T ss_pred CCcCceEEEEEec
Confidence 4578999999998
No 261
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=21.37 E-value=63 Score=19.03 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=12.7
Q ss_pred EEEE-EecCHHHHHHHHH
Q psy17806 39 NVYI-KFRREEDAEKAVN 55 (130)
Q Consensus 39 ~vfV-~F~~~e~A~~A~~ 55 (130)
.+++ +|.++|+|..|..
T Consensus 27 r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 27 RVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEEEESSHHHHHHHHH
T ss_pred EEEeeeCCCHHHHHHHHH
Confidence 4444 7999999998764
No 262
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=21.27 E-value=1.6e+02 Score=21.46 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHhhccCC-ceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-------CEeCCeeEEEE
Q psy17806 3 EHYDNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN-------RWFGGRPVYAE 70 (130)
Q Consensus 3 ~~~d~~~eDi~~e~~skfG-~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnG-------r~f~GR~I~v~ 70 (130)
.++..|.+.|.... ..-| .+.. -..--+-++-.+.+.|.+....|-. ..++||||..-
T Consensus 19 ~dl~~F~~ki~~l~-~~Lgldl~~---------~~~DHIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI~l~ 84 (192)
T 1k4n_A 19 SDLPRFIHALDELS-RRLGLNITP---------LTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLF 84 (192)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCCTT---------CEEEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHH-HHhCCCchh---------ccCcEEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeEEEE
Confidence 45677777777777 4555 3322 2234567888999999988888765 46899999854
No 263
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=21.16 E-value=1.4e+02 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=38.6
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy17806 18 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 74 (130)
Q Consensus 18 skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~f~GR~I~v~~~~~ 74 (130)
+.+|-|+++.+--.........+.+.|.+.++|.+|+..+-.. .-.+-.+++.+.
T Consensus 299 GtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~--~~~p~a~El~d~ 353 (584)
T 2uuu_A 299 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSS--EVIPTMIRVYDP 353 (584)
T ss_dssp TSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHH--TCCCSEEEEECH
T ss_pred CCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhc--CCCceEEEEech
Confidence 4678899998875433344567789999999999999877542 223556677654
No 264
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=20.81 E-value=2e+02 Score=19.23 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCE---eCCeeEEEEeccCccchhhhhc
Q psy17806 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW---FGGRPVYAELSPVTDFREACCR 83 (130)
Q Consensus 7 ~~~eDi~~e~~skfG~I~~v~v~~~~~~~~~G~vfV~F~~~e~A~~A~~~lnGr~---f~GR~I~v~~~~~~~f~~a~c~ 83 (130)
..++++-..+...=|=|-++++.... ....|=+|+ |++.++|++- -.++-.. ++=..|++.++++..--.++.+
T Consensus 28 ~~f~~lA~si~~epGLiwKiWte~e~-t~~aGGiYL-Fes~~~AeaY-~~~h~arl~~~Gi~~i~~kiFdin~~ls~i~~ 104 (113)
T 2hiq_A 28 EQLKPLAESINQEPGFLWKVWTESEK-NHEAGGIYL-FTDEKSALAY-LEKHTARLKNLGVEEVVAKVFDVNEPLSQINQ 104 (113)
T ss_dssp HHSHHHHHHHTTSTTEEEEEEEEETT-TTEEEEEEE-ESSHHHHHHH-HHHHHHHHGGGTCCCCEEEEEEECHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEcCC-CCeeeEEEE-eCCHHHHHHH-HHHHHHHHHHcCCcceEEEEEecccchhhhcc
Confidence 33344444443345778888887653 345676764 9998877743 3444222 2336788888887777777766
Q ss_pred ccccCCCC
Q psy17806 84 QYEMGECT 91 (130)
Q Consensus 84 ~~~~~~c~ 91 (130)
....+-|.
T Consensus 105 ~~~~~~~~ 112 (113)
T 2hiq_A 105 AKLAGLCG 112 (113)
T ss_dssp --------
T ss_pred cchhhhcC
Confidence 55555554
Done!