RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17806
(130 letters)
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 72.4 bits (177), Expect = 2e-18
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 1 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 32 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91
Query: 61 WFGGRPVYAELSP 73
WF G+P++AELSP
Sbjct: 92 WFNGQPIHAELSP 104
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 62.7 bits (152), Expect = 1e-14
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 3 EHYDNFFEDVFVECEDKYG--EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 60
E Y+ EDV EC IE D + G ++++F D +KA+ L R
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81
Query: 61 WFGGRPVYAELSPVTDFRE 79
F R V + +
Sbjct: 82 KFANRVVVTKYCDPDSYHR 100
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 53.8 bits (129), Expect = 3e-11
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 6 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 65
++ + + + ++ H G + FR E+A+ + L+ RWFGGR
Sbjct: 26 PLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 85
Query: 66 PVYAELS-PVTDFR 78
+ A+ TD++
Sbjct: 86 QITAQAWDGTTDYQ 99
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 42.6 bits (100), Expect = 4e-07
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 19 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73
++G +++ V + +G + F R+ DA KA+ N GRP+ +L
Sbjct: 23 EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 39.9 bits (93), Expect = 4e-06
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
E + E G I + VC ++ +G Y+ F++ DAE+A++ +N G+PV
Sbjct: 14 EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 73
Query: 69 AELS 72
S
Sbjct: 74 IMWS 77
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 39.9 bits (93), Expect = 7e-06
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 19 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
KYG+I +V G ++++ E +A AV + R G+ + L+
Sbjct: 39 KYGKIVGCSVHK-------GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA 85
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 38.5 bits (89), Expect = 3e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ + KYG I ++ V + G Y+ + DA+ A + L+ R +
Sbjct: 21 AEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVV 78
Query: 70 ELS 72
Sbjct: 79 LYY 81
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 37.7 bits (87), Expect = 3e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 EDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
+ V +G+I ++ D + G +++F EDA A++++N GR +
Sbjct: 19 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 78
Query: 69 AELS 72
L+
Sbjct: 79 VNLA 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.9 bits (82), Expect = 2e-04
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E + + + V D G + +++ +E A A+ +LN R F GR +
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82
Query: 70 ELS 72
+ +
Sbjct: 83 DNA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 35.4 bits (81), Expect = 3e-04
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 19 KYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
G I + D + G ++ F E D+++A+ LN + + +
Sbjct: 25 AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 79
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.7 bits (79), Expect = 4e-04
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
D+ + V D G ++ F +DA++A N GR +
Sbjct: 24 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.6 bits (79), Expect = 5e-04
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73
+I+ AE A +L+N G+ + +
Sbjct: 48 FIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 34.6 bits (79), Expect = 6e-04
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 19 KYGEIEEMNVCDNLGDHLVGNV----YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
K G I+ + V ++++++ E A+KA+ L G + +S
Sbjct: 21 KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 78
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.5 bits (79), Expect = 7e-04
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E ++ + + D + G ++++ DAE A+ +N R +
Sbjct: 22 EQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 81
Query: 70 ELSPVTDFREACCRQY 85
+ F+E RQY
Sbjct: 82 DWDA--GFKEG--RQY 93
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 34.2 bits (78), Expect = 8e-04
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 26 MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
+ G YI+F+ E DAEK + + GR V +
Sbjct: 42 EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.3 bits (78), Expect = 8e-04
Identities = 7/63 (11%), Positives = 20/63 (31%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+D+ + D + ++ + A+ A+ +N G + +
Sbjct: 33 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 92
Query: 70 ELS 72
+L
Sbjct: 93 QLK 95
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 33.9 bits (77), Expect = 0.001
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E + ++ + G + + +++F DA A+ +N R G+ V
Sbjct: 22 EVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 80
Query: 70 ELS 72
+
Sbjct: 81 NWA 83
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 33.6 bits (76), Expect = 0.001
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
+D+ C+ + + D + G ++ F A+KAV L +
Sbjct: 13 QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 70
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.6 bits (76), Expect = 0.001
Identities = 9/60 (15%), Positives = 25/60 (41%)
Query: 14 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 73
C++ + +++ ++ D ++ E A+ A+ + F G+ + +L P
Sbjct: 17 SNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 33.5 bits (76), Expect = 0.001
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ V V D+ G + ++ ++A+ LN G + +
Sbjct: 16 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 75
Query: 70 ELS 72
+ +
Sbjct: 76 QRA 78
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 33.5 bits (76), Expect = 0.001
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+++ + + N G + F ++A AV DLN+R G R V
Sbjct: 24 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 83
Query: 70 EL 71
L
Sbjct: 84 VL 85
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 33.2 bits (75), Expect = 0.002
Identities = 8/63 (12%), Positives = 19/63 (30%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+++ + D D G +++ + A A LN G+ +
Sbjct: 22 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 81
Query: 70 ELS 72
+
Sbjct: 82 DWC 84
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 33.1 bits (75), Expect = 0.002
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
G ++ F+ A A+ + F +P+ + +
Sbjct: 47 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 81
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 33.1 bits (75), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F E A KA +++ + F GR ++ S
Sbjct: 52 FAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 32.8 bits (74), Expect = 0.002
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGD-HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
++ F GEIE + + +G ++ + +DAEKA+N LN + +
Sbjct: 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75
Query: 69 AELS 72
+
Sbjct: 76 VSYA 79
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 33.7 bits (76), Expect = 0.002
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ E VCD G ++KF+ A++A+ LN + +
Sbjct: 57 VQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116
Query: 70 ELS 72
L+
Sbjct: 117 ALA 119
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.2 bits (75), Expect = 0.002
Identities = 7/63 (11%), Positives = 19/63 (30%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E +G++ + + G + + E E + N ++ P +
Sbjct: 32 EQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 91
Query: 70 ELS 72
+
Sbjct: 92 APT 94
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 0.003
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
D+ D G +I F R EDA +A+ ++ + +
Sbjct: 23 TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 82
Query: 70 ELS 72
E +
Sbjct: 83 EWA 85
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 32.2 bits (73), Expect = 0.004
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 19 KYGEIEEMNVCDNLGDHLVGNV-YIKFRREEDAEKAVNDLNNRWFGGR 65
KYG I + N+ + V ++++ + E+A++A++ LNN G
Sbjct: 29 KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 76
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 32.5 bits (73), Expect = 0.005
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 79
V I F A A L+ F G+ + +
Sbjct: 47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGS 88
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.9 bits (72), Expect = 0.005
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
E + E + G + ++ + G +++F EEDA+ A+ ++ G+P+
Sbjct: 23 EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 82
Query: 69 AELS 72
+
Sbjct: 83 VNKA 86
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.6 bits (71), Expect = 0.008
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ + E + V D G ++ F +DA+ A+ +N + GR +
Sbjct: 20 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
Query: 70 ELS 72
+ +
Sbjct: 80 DQA 82
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 31.2 bits (70), Expect = 0.011
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F DA++A L+ GR + +
Sbjct: 55 FVTFENSADADRAREKLHGTVVEGRKIEVNNA 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 30.8 bits (69), Expect = 0.012
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 65
+ + +YG I + + G +I+F + +AE+A+ LN + G
Sbjct: 20 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 76
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.9 bits (69), Expect = 0.013
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 14 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
V+ + G+ D G+ + + A+ AV + + F G + L+
Sbjct: 35 VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 93
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 30.8 bits (69), Expect = 0.017
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ KYG I ++++ + +++F DAE AV + + G +
Sbjct: 28 TKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
Query: 70 ELS 72
E
Sbjct: 86 EFP 88
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 30.7 bits (69), Expect = 0.018
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 19 KYGEIEEMNVC--DNLGDHLVGNVYIKFRREEDAEKAVNDLNN-RWFGGRPVYAELS 72
+GE++ + + G ++ F ++DA+KA N L + GR + E +
Sbjct: 31 TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 87
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 30.4 bits (68), Expect = 0.028
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGGRPV 67
DV + K+G + ++ +++ A+ A L+ + + +
Sbjct: 21 LDVLHQIFSKFGTVLKIITFTKNNQ---FQALLQYADPVSAQHAKLSLDGQNIYNACCTL 77
Query: 68 YAELS 72
+ S
Sbjct: 78 RIDFS 82
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 30.3 bits (67), Expect = 0.030
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
++F +A KA L F P+Y E +P+ F A
Sbjct: 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 29.6 bits (66), Expect = 0.031
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F +E AE+A+ +N R V+
Sbjct: 50 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 83
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 29.8 bits (66), Expect = 0.033
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHL-VGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
+ + + +L + YI +EDA V LN G +
Sbjct: 15 QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 74
Query: 69 AELS 72
++S
Sbjct: 75 TKVS 78
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 29.8 bits (66), Expect = 0.034
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW------FG 63
E + + V +H G + +F +E A+K + +
Sbjct: 23 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 82
Query: 64 GRPVYAELS 72
GR + +L+
Sbjct: 83 GRQLKVDLA 91
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 28.8 bits (64), Expect = 0.059
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
++ E ++GE++E V + L G ++ F + +K + + + +
Sbjct: 14 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTI 71
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.2 bits (65), Expect = 0.059
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+D+ + D H G +++F E K ++ + GR
Sbjct: 23 QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRH--MIDGRWCDC 80
Query: 70 ELS 72
+L
Sbjct: 81 KLP 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 29.2 bits (65), Expect = 0.064
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 19 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
+G+I E+ V G +++F E A A+ +N G V
Sbjct: 41 PFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 259
Score = 29.4 bits (65), Expect = 0.093
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGF 95
+ + R E + +L + + V A + + E R
Sbjct: 35 VMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD-LGTEAGVQRLLSAVRELPRPEG 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.0 bits (62), Expect = 0.097
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
+D+ ++ D + G ++ F+ E +K + D G+ +
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKLNGKVI 70
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 28.7 bits (63), Expect = 0.11
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 63
+ DV E + ++V + +G ++F+ E+DA K+ L+ +
Sbjct: 17 PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RLHRKKLN 75
Query: 64 GRPVYAELSPVTDFREA 80
GR + + + D RE
Sbjct: 76 GREAFVHVVTLEDMREI 92
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.1 bits (62), Expect = 0.11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F EDA +A+ LN + G P+ L+
Sbjct: 48 FVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 79
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.6 bits (63), Expect = 0.12
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
+ E E + + D G ++ AE+A D N GR
Sbjct: 25 ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 83
Query: 70 ELS 72
L+
Sbjct: 84 NLA 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 28.1 bits (62), Expect = 0.12
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 27 NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
N+ D D ++ + + E A++AV +LN + ++
Sbjct: 29 NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.2 bits (62), Expect = 0.16
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
D+ + + + G +I F +E A +A++ +N G+ +
Sbjct: 33 RDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 92
Query: 70 ELS 72
E
Sbjct: 93 EFG 95
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 27.8 bits (61), Expect = 0.18
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
G +I F + ++ A+ +N ++ RP+ +
Sbjct: 42 GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 76
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.8 bits (61), Expect = 0.20
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 17 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
+D + E G +++ R+ED E A+ L++ F
Sbjct: 30 QDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEG 80
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.9 bits (61), Expect = 0.22
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 4 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 63
++ + V + + + + G +++FR E D + A+ + ++ G
Sbjct: 27 PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQYMG 85
Query: 64 GRPVYAELSPVTDFREA 80
R + E
Sbjct: 86 NRFIQVHPITKKGMLEK 102
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 27.0 bits (59), Expect = 0.23
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
EDV E + M + D + G ++ F E+ EK ++ + V
Sbjct: 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 27.3 bits (60), Expect = 0.28
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRP 66
YI++ + A+ A + GG
Sbjct: 57 YIQYESLDAAQAACAKMRGFPLGGPD 82
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.3 bits (60), Expect = 0.29
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 10 EDVFVECEDKYGEIEEMNVC---DNLGDHLVGNVYIKFRREEDAEKAVNDLNNR--WFGG 64
+ +E K E + G ++++ A A L G
Sbjct: 15 REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 74
Query: 65 RPVYAELS 72
+ + +
Sbjct: 75 HQIAVDWA 82
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.1 bits (59), Expect = 0.39
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E++ M + + G +++F +E AEKA+ + G R +
Sbjct: 30 EEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEI 88
Query: 70 ELSPVTDFREA 80
S + R +
Sbjct: 89 FKSSRAEVRTS 99
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl
reductase/20beta-hydroxysteroid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 27.5 bits (60), Expect = 0.41
Identities = 9/60 (15%), Positives = 16/60 (26%)
Query: 38 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCN 97
G+V + R + AV L R ++ + R + N
Sbjct: 29 GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNN 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.0 bits (59), Expect = 0.42
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 9 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
E V + + + + N ++ A+ A++ LN G+P+
Sbjct: 12 PERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 71
Query: 69 AELS 72
LS
Sbjct: 72 ITLS 75
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 26.6 bits (58), Expect = 0.46
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 41 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F ++ AE+A+ +N G R + L+
Sbjct: 52 FMVFENKDSAERAL-QMNRSLLGNREISVSLA 82
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.5 bits (58), Expect = 0.48
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 35 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 72
++ F ++ A+ + G V+ +
Sbjct: 40 PFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.3 bits (59), Expect = 0.49
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
E + ++YG+IE + + D G ++ F + +K V G
Sbjct: 111 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCE 169
Query: 69 AELS 72
+
Sbjct: 170 VRKA 173
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.8 bits (56), Expect = 0.77
Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 1/58 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
+ E + D G ++ F + +K V G
Sbjct: 17 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNC 73
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 25.9 bits (56), Expect = 0.79
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 15 ECEDKYGEIEEMNV----CDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 67
E K+G+I ++ + + Y+ + R EDA +A+ +NN GR +
Sbjct: 30 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 86
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.9 bits (56), Expect = 0.83
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E+ + G ++F EDA A+ + R V
Sbjct: 29 ENDIYNFFSPLNPMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHRYVEL 86
Query: 70 ELS 72
L+
Sbjct: 87 FLN 89
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 25.7 bits (55), Expect = 1.0
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 66
N + ++ V D Y+ F ED EKA+ L G
Sbjct: 24 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 82
Query: 67 VYAELS 72
+ E
Sbjct: 83 IKLEKP 88
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (55), Expect = 1.1
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 14 VECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVN--DLNNRWFGGRPVYAE 70
V + N+ N +++ EE A VN +P+Y +
Sbjct: 20 VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 79
Query: 71 LS 72
S
Sbjct: 80 YS 81
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 26.1 bits (57), Expect = 1.3
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
+VY R +++ + ++ F +LS ++ +E
Sbjct: 34 SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL 75
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.9 bits (54), Expect = 1.4
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNV-YIKFRREEDAEKAVNDLNNRWFGGRPV 67
E+ E +GE+E + + + + +I F+ EE +K + + G
Sbjct: 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EKKYHNVGLSKC 70
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.1 bits (54), Expect = 1.7
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 41 YIKFRREEDAEKAVNDLNN--RWFGGRPVYAELS 72
++F + A++ V + + G+ + S
Sbjct: 55 LVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 25.7 bits (56), Expect = 1.7
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76
V R + E+ + + + G + +++
Sbjct: 36 KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD-LSN 72
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.8 bits (56), Expect = 2.0
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76
V I R E+ E+ + + A ++ VT+
Sbjct: 30 QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE 67
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 25.3 bits (55), Expect = 2.8
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76
V I R E E+ + + V + ++ VT
Sbjct: 31 KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT 68
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 25.0 bits (54), Expect = 3.4
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 76
NV I R E E+ + + V + ++ VT
Sbjct: 31 NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT 68
>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 251
Score = 25.0 bits (54), Expect = 3.5
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR-QYEMGECTRSGFCN 97
+V R ++ + V+++ + + ++S + E + E
Sbjct: 36 HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNA 95
Query: 98 FMH 100
+
Sbjct: 96 GIT 98
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 3.9
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 10 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 69
E + + + + L G Y +F + A++ LN G + +
Sbjct: 30 ESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRV 88
Query: 70 ELS 72
+++
Sbjct: 89 DVA 91
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 23.7 bits (50), Expect = 4.3
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 7 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGR 65
N E+ L + +++F E + A L
Sbjct: 15 NLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTH 74
Query: 66 PVYAELS 72
+ +
Sbjct: 75 AMKITFA 81
>d1hy9a_ g.3.17.1 (A:) Satiety factor CART (cocaine and amphetamine
regulated transcript) {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 22.8 bits (49), Expect = 4.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 73 PVTDFREACC-----RQYEMGECTRSGFCNFMHLK 102
P+ D E C R ++ +C R CN LK
Sbjct: 5 PMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLK 39
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
9606]}
Length = 29
Score = 22.5 bits (48), Expect = 4.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 78 REACCRQYEMGECTRSGFCNFMH 100
+ C+ Y G C R+ C +MH
Sbjct: 5 KRELCKFYITGFCARAENCPYMH 27
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 24.3 bits (52), Expect = 5.3
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 80
VY R E++ ++ + + +L T+ +
Sbjct: 32 RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKL 73
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 259
Score = 24.2 bits (52), Expect = 5.6
Identities = 4/45 (8%), Positives = 14/45 (31%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 83
++ R E + + ++ + F + S + +
Sbjct: 34 VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 78
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 24.0 bits (51), Expect = 6.8
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 39 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 83
+ + E EKA + + R +++
Sbjct: 31 AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 75
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 22.9 bits (48), Expect = 9.8
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 14 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 68
+D + E + G ++F R+ED AV L+N F
Sbjct: 12 GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,821
Number of extensions: 24327
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 94
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)