BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17809
(294 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328712552|ref|XP_001949586.2| PREDICTED: protein trachealess-like [Acyrthosiphon pisum]
Length = 964
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 170/382 (44%), Positives = 209/382 (54%), Gaps = 104/382 (27%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+ELFEQHQGTHILQ VEMTGSSVFDYIHQAD
Sbjct: 108 LELFEQHQGTHILQSLDGFAFALAADGRFLYISETVSIYLGLSQVEMTGSSVFDYIHQAD 167
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGM-NTGTANPDVSSLMSLS----------- 78
H+ELAEQLGLGL+QG G+ASP +++ G N GTANPDVSS+MSLS
Sbjct: 168 HSELAEQLGLGLTQGQGMASPSPSSAGSEEGSSNVGTANPDVSSVMSLSSTNAYKGLDRA 227
Query: 79 ------SSSSYKGCDRS--------FCIRMKSTLT---KRGCHFKSSGYRSL-------- 113
S+ + +GC R++ T R C G SL
Sbjct: 228 FCIRMKSTLTKRGCHFKSSGYRVVLLICRLRPQYTFSHNRKCAPPLLGAVSLAIALPPPS 287
Query: 114 --------DGFAFALGSDGRFLYISETVSIYL--------GLSQWQV------------- 144
D F L D R + V+ L G++ + +
Sbjct: 288 VHEIRLETDMFVTRLYFDFRIAHCEPRVAEILDYTADELTGMNMYTLCHGEDVGKLRKCH 347
Query: 145 ---INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
INKGQ++THYYR+MNKNGGYTW+Q+C TVVC+SKNA+EQNIICVNYV+S RE++N I
Sbjct: 348 LDLINKGQMMTHYYRVMNKNGGYTWMQTCGTVVCNSKNAEEQNIICVNYVVSAREFDNLI 407
Query: 202 MDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSE 261
MDCCQ+E++I+QR VKREE NDPEN SPD DGR R DHL+P D++DG S
Sbjct: 408 MDCCQMEEHIRQRAVKREETGGNDPENGSPDGGGGDGRGGNPRR--DHLTPADLDDGHS- 464
Query: 262 GDNSGDQ-RGRNHLDHVTQLHN 282
D GD RGRNH+D +TQL+N
Sbjct: 465 ADGQGDPTRGRNHVD-ITQLNN 485
>gi|112984028|ref|NP_001036830.1| trachealess [Bombyx mori]
gi|2564053|dbj|BAA22946.1| Bm trachealess [Bombyx mori]
Length = 849
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 170/400 (42%), Positives = 206/400 (51%), Gaps = 121/400 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
MELFEQHQGTHILQ VEMTGSS+FDY+HQAD
Sbjct: 159 MELFEQHQGTHILQSLDGFALSVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYVHQAD 218
Query: 31 HTELAEQLGLGL---SQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSS-YKGC 86
H E+AEQLGL L S G GL SP S SEEGS GT NPDVSS MSL++S S Y+G
Sbjct: 219 HAEIAEQLGLSLAGRSGGAGLNSPASG-SEEGS--QHGTNNPDVSSQMSLAASGSLYRGM 275
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGYRSL--------------------------------- 113
DR+FC+RMKSTLTKRGCHFKSSGYR +
Sbjct: 276 DRAFCVRMKSTLTKRGCHFKSSGYRVVLMLCRLRPQYSFSHSRKSPTVLLGMVALAIALP 335
Query: 114 -----------DGFAFALGSDGRFLYISET-VSIYLGLSQWQVINKG-QVLTH------- 153
D F + D R + + VS LG + ++ K L H
Sbjct: 336 PPSVHEIRLESDMFVTRINFDFRIAHCEPSRVSELLGYTAEELTGKNLYTLCHGEDANKL 395
Query: 154 ---YYRLMNKN-------------GGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
+ LMNK GGYTW+Q+CATVVCSSKNA+EQNIICVNYVISGREY
Sbjct: 396 RKCHLDLMNKGQVLTHYYRIMNKLGGYTWMQTCATVVCSSKNAEEQNIICVNYVISGREY 455
Query: 198 ENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPP-DIE 256
N +MDCCQLE+ +Q GVKREE + DPEN PD D G + PP + E
Sbjct: 456 PNTVMDCCQLEESVQ--GVKREE-TTGDPENGPPDTDNTGGPPPTSRHPAERTEPPTNSE 512
Query: 257 DGTSEGDNSGDQRGRNHLDHVTQLHN-----ISTPPEQSA 291
+S N+ D + H+T+L++ + T PE+++
Sbjct: 513 TASSAPVNASD------VTHLTRLNDAQPLPLHTTPERTS 546
>gi|270015606|gb|EFA12054.1| trachealess [Tribolium castaneum]
Length = 851
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 159/392 (40%), Positives = 198/392 (50%), Gaps = 110/392 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
M++FEQHQGTHILQ VEMTGSSVFDYIH D
Sbjct: 177 MDMFEQHQGTHILQSLDGFALALAADGRFLYISETVSIYLGLSQVEMTGSSVFDYIHHLD 236
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSG-----------MNTGTANP----DVSSLM 75
H+E+AEQLGLGL+QG LASPGS + E S M+ GT P D + +
Sbjct: 237 HSEMAEQLGLGLAQGQNLASPGSGSEESASTAGTNNPDVSTIMSIGTNPPFKGLDRAFCV 296
Query: 76 SLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRSL--------------------- 113
+ S+ + +GC +S R+ L + + S R
Sbjct: 297 RMKSTLTKRGCHFKSSGYRVVLMLCRLRPQYTFSHSRKSQPPLLGMVALAIALPPPSVHE 356
Query: 114 -----DGFAFALGSDGRFLYISETVSIYLGLSQWQV------------------------ 144
D F + D R + VS L + ++
Sbjct: 357 IRLESDMFVTRINFDFRIAHCEPKVSDLLDYTAEELTGRNLYTLCHGEDANKLRKCHIDL 416
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNADEQNIICVNYVISGREYEN IMDC
Sbjct: 417 IHKGQVLTHYYRLMNKSGGYTWMQTCATVVCNSKNADEQNIICVNYVISGREYENMIMDC 476
Query: 205 CQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIED-GTSEG- 262
CQ+ED VKREE ++NDPEN SPDADR DGRNSG N + ++ED T+ G
Sbjct: 477 CQMEDNTHM--VKREEANSNDPENGSPDADRGDGRNSGGPPNPPQDTTQNLEDTSTAPGG 534
Query: 263 -----DNSGDQRGRNHLDHVTQLHNISTPPEQ 289
+ SGD R R ++ + TP +Q
Sbjct: 535 GGGTIEESGDPRTRR-----LEVSKLQTPTDQ 561
>gi|320545371|ref|NP_001097461.2| trachealess, isoform C [Drosophila melanogaster]
gi|318069090|gb|ABW08426.2| trachealess, isoform C [Drosophila melanogaster]
Length = 966
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 196/388 (50%), Gaps = 127/388 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 207 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 266
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 267 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 325
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------- 113
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR +
Sbjct: 326 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQ 385
Query: 114 -------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVIN-- 146
D F + D R + VS L S ++N
Sbjct: 386 PPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKS 445
Query: 147 ----------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQN
Sbjct: 446 LYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQN 505
Query: 185 IICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS 244
IICVNYVIS RE EN I+DCCQLE +K EE ND + SP D NS
Sbjct: 506 IICVNYVISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS--- 560
Query: 245 RNHDHLSPPDIEDGTSEGDNSG-DQRGR 271
HLS D++ + + D+ G RGR
Sbjct: 561 ----HLSAGDMKLNSPKTDSEGHSHRGR 584
>gi|307182730|gb|EFN69854.1| Protein trachealess [Camponotus floridanus]
Length = 965
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 158/389 (40%), Positives = 197/389 (50%), Gaps = 118/389 (30%)
Query: 4 FEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHTE 33
FE HQGTHILQ VEMTGSSVFDY+HQ DH E
Sbjct: 176 FEIHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQDHAE 235
Query: 34 LAEQLGLGL----------SQGHGLASPGSANSEEGSGMNTGTANPDVSSLMS------- 76
+AEQLGL L S GLASP S SE+ ++ TANPDV+S+M+
Sbjct: 236 VAEQLGLLLATSTNTSGPHSSNSGLASPSSGASEDHG--SSSTANPDVASVMALTPTGLY 293
Query: 77 ----------LSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-------LDGFAF 118
+ S+ + +GC +S R+ L + F S R + G A
Sbjct: 294 KGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQFVFSHTRKSAPPLMGMIGLAI 353
Query: 119 ALGS-------------------DGRFLYISETVS--------------IY--------- 136
AL D R + VS +Y
Sbjct: 354 ALPPPSVHEIRLETDMFVTRINFDFRIAHCEPKVSDLLDYTADELTGKNLYALCHGEDAN 413
Query: 137 -LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGR
Sbjct: 414 RLRRSHVDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGR 473
Query: 196 EYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLS 251
EYEN IMDCCQLED + GVKRE+ + NDPEN SPDADR +GR+ G N H S
Sbjct: 474 EYENLIMDCCQLEDGVT--GVKREDTAGNDPENGSPDADRGEGRSRGGPTNQHQEQSHRS 531
Query: 252 PPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
PP+ + + ++ ++RG H D++ QL
Sbjct: 532 PPEEREESHASES--EKRGSRHHDNIAQL 558
>gi|307202142|gb|EFN81642.1| Protein trachealess [Harpegnathos saltator]
Length = 927
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 192/396 (48%), Gaps = 118/396 (29%)
Query: 4 FEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHTE 33
FE HQGTHILQ VEMTGSSVFDYIHQ DH E
Sbjct: 145 FEIHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYIHQQDHAE 204
Query: 34 LAEQLGLGL----------SQGHGLASPGSANSEEGSGMNTGTANP-------------- 69
+AEQLGLGL S GLASP SA SEE +T TANP
Sbjct: 205 VAEQLGLGLASSTSTSGPHSSNSGLASPSSAASEEHG--STSTANPDVSSIMSLSASGPY 262
Query: 70 ---DVSSLMSLSSSSSYKGCDRS--------FCIRMKSTLTKRGCHFKSSGYRSLDGFAF 118
D + + + S+ + +GC R++ L + + G A
Sbjct: 263 KGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQLIFSHTRKTAPPLMGMIGLAI 322
Query: 119 ALGS-------------------DGRFLYISETVS--------------IY--------- 136
AL D R + VS +Y
Sbjct: 323 ALPPPSVHEIRLETDMFVTRINFDFRIAHCEPKVSELLDYTADELTGKNLYTLCHGEDAN 382
Query: 137 -LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGR
Sbjct: 383 RLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGR 442
Query: 196 EYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLS 251
EYEN IMDCCQLED + GVKRE+ + NDPEN SPDADR +GR+ G N H S
Sbjct: 443 EYENLIMDCCQLEDGVT--GVKREDTAGNDPENGSPDADRGEGRSRGGPTNQHQEQSHRS 500
Query: 252 PPDIEDGTSEGDNSGDQRGRNHLDHVTQLHNISTPP 287
P + E S G S ++RG H D++ QL S P
Sbjct: 501 PAE-EREESHGSES-EKRGSRHHDNIAQLQQESQTP 534
>gi|322788144|gb|EFZ13926.1| hypothetical protein SINV_02826 [Solenopsis invicta]
Length = 739
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/346 (43%), Positives = 184/346 (53%), Gaps = 88/346 (25%)
Query: 17 MTGSSVFDYIHQADHTELAEQLGLGL----------SQGHGLASPGSANSEEGSGMNTGT 66
MTGSSVFDY+HQ DH E+AEQLGLGL S GLASP S SEE ++ T
Sbjct: 1 MTGSSVFDYVHQQDHAEVAEQLGLGLASSTSTSAPHSSNSGLASPSSGASEEHG--SSST 58
Query: 67 ANPDVSSLMS-----------------LSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSS 108
ANPDVSS+MS + S+ + +GC +S R+ L + F S
Sbjct: 59 ANPDVSSVMSLSSTGLYKGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQFVFS 118
Query: 109 GYRS-------LDGFAFALGS-------------------DGRFLYISETVS-------- 134
R + G A AL D R + VS
Sbjct: 119 HARKSAPPLMGMVGLAIALPPPSVHEIRLETDMFVTRINFDFRIAHCEPKVSDLLDYTAD 178
Query: 135 ------IY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+Y L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SK
Sbjct: 179 ELTGKNLYTLCHGEDANRLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWIQTCATVVCNSK 238
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDG 238
NA+EQNIICVNYVISGREYEN IMDCCQLED + GVKRE+ + NDPEN SPDADR +G
Sbjct: 239 NAEEQNIICVNYVISGREYENLIMDCCQLEDGVT--GVKREDTAGNDPENGSPDADRGEG 296
Query: 239 RNSGDSRN----HDHLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
R+ G N H SPP E+ + ++RG H D++ QL
Sbjct: 297 RSRGGPTNQHQEQSHRSPP--EEREENHASESEKRGSRHHDNIAQL 340
>gi|189241974|ref|XP_967112.2| PREDICTED: similar to Bm trachealess [Tribolium castaneum]
Length = 820
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/392 (40%), Positives = 196/392 (50%), Gaps = 112/392 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
M++FEQHQGTHILQ VEMTGSSVFDYIH D
Sbjct: 148 MDMFEQHQGTHILQSLDGFALALAADGRFLYISETVSIYLGLSQVEMTGSSVFDYIHHLD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSG-----------MNTGTANP----DVSSLM 75
H+E+AEQLGLGL+QG LASPGS + E S M+ GT P D + +
Sbjct: 208 HSEMAEQLGLGLAQGQNLASPGSGSEESASTAGTNNPDVSTIMSIGTNPPFKGLDRAFCV 267
Query: 76 SLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRSL--------------------- 113
+ S+ + +GC +S R+ L + + S R
Sbjct: 268 RMKSTLTKRGCHFKSSGYRVVLMLCRLRPQYTFSHSRKSQPPLLGMVALAIALPPPSVHE 327
Query: 114 -----DGFAFALGSDGRFLYISETVSIYLGLSQWQV------------------------ 144
D F + D R + VS L + ++
Sbjct: 328 IRLESDMFVTRINFDFRIAHCEPKVSDLLDYTAEELTGRNLYTLCHGEDANKLRKCHIDL 387
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNADEQNIICVNYVISGREYEN IMDC
Sbjct: 388 IHKGQVLTHYYRLMNKSGGYTWMQTCATVVCNSKNADEQNIICVNYVISGREYENMIMDC 447
Query: 205 CQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIED-GTSEG- 262
CQ+ED VKREE ++NDPEN SPDAD GRNSG N + ++ED T+ G
Sbjct: 448 CQMEDNTHM--VKREEANSNDPENGSPDADH--GRNSGGPPNPPQDTTQNLEDTSTAPGG 503
Query: 263 -----DNSGDQRGRNHLDHVTQLHNISTPPEQ 289
+ SGD R R ++ + TP +Q
Sbjct: 504 GGGTIEESGDPRTRR-----LEVSKLQTPTDQ 530
>gi|328787564|ref|XP_391937.3| PREDICTED: protein trachealess-like isoform 1 [Apis mellifera]
Length = 986
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 158/392 (40%), Positives = 194/392 (49%), Gaps = 119/392 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
M+ F+ HQGTHILQ VEMTGSSVFDY+HQ D
Sbjct: 221 MDHFDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQD 280
Query: 31 HTELAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMS---- 76
H E+AEQLGLGL+ S++ E GS + TANPDVSS+MS
Sbjct: 281 HAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSAN 337
Query: 77 -------------LSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-------LDG 115
+ S+ + +GC +S R+ L + + S R + G
Sbjct: 338 NLYKGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQYTFSHTRKSAPPLIGMVG 397
Query: 116 FAFALGS-------------------DGRFLYISETVS--------------IY------ 136
A AL D R + VS +Y
Sbjct: 398 LAIALPPPSVHEIRLETDMFVTRINFDFRIAHCEPRVSELLDYTADELTGKNLYTLCHGE 457
Query: 137 ----LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVI
Sbjct: 458 DANRLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVI 517
Query: 193 SGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HD 248
SGREYEN IMDCCQLE+ + GVKRE+ + NDPEN SPDADR +GRN G N H
Sbjct: 518 SGREYENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDADRGEGRNHGGPPNQHQEHP 575
Query: 249 HLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
H SPP ED + ++RG H D + QL
Sbjct: 576 HRSPP--EDREDTRGSESEKRGSRHHDSIAQL 605
>gi|332027679|gb|EGI67747.1| Protein trachealess [Acromyrmex echinatior]
Length = 953
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 184/338 (54%), Gaps = 79/338 (23%)
Query: 15 VEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSL 74
VEMTGSSVFDY+HQ DH E+AEQLGLGL+ ++P S+NS S ++ PDVSS+
Sbjct: 227 VEMTGSSVFDYVHQQDHAEVAEQLGLGLASTTSTSAPHSSNSGLAS---PSSSMPDVSSV 283
Query: 75 MS-----------------LSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
MS + S+ + +GC +S R+ L + F S R
Sbjct: 284 MSLSATGLYKGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQFIFSHARKSAPP 343
Query: 113 ---LDGFAFALGS-------------------DGRFLYISETVS--------------IY 136
+ G A AL D R + VS +Y
Sbjct: 344 LMGMVGLAIALPPPSVHEIRLETDMFVTRISFDFRIAHCEPKVSELLDYTADELTGKNLY 403
Query: 137 ----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNII 186
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNADEQNII
Sbjct: 404 TLCHGEDANRLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNADEQNII 463
Query: 187 CVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN 246
CVNYVISGREYEN IMDCCQLED + GVKRE+ + NDPEN SPDADR +GR+ G N
Sbjct: 464 CVNYVISGREYENLIMDCCQLEDGVT--GVKREDTAGNDPENGSPDADRGEGRSRGGPTN 521
Query: 247 ----HDHLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
H SPP+ + + ++ ++RG H +++ QL
Sbjct: 522 QHQEQSHRSPPEEREESHPSES--EKRGSRHHENIAQL 557
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 10/71 (14%)
Query: 80 SSSYKGCDRSFCIRMKSTLTKRGCHFK----SSGYRSLDGFAFALGSDGRFLYISETVSI 135
S S KG +R ++S+ + HF+ + +SLDGFA A+ +DGRFLYISETVSI
Sbjct: 124 SKSVKGANR-----VRSSTSAAIDHFEIHQGTHILQSLDGFAMAVAADGRFLYISETVSI 178
Query: 136 YLGLSQ-WQVI 145
YLGLSQ W I
Sbjct: 179 YLGLSQRWYNI 189
>gi|380022833|ref|XP_003695240.1| PREDICTED: protein trachealess-like [Apis florea]
Length = 941
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 183/350 (52%), Gaps = 89/350 (25%)
Query: 13 LQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANS----------EEGSGM 62
QVEMTGSSVFDY+HQ DH E+AEQLGLGL+ S++ E GS
Sbjct: 218 FQVEMTGSSVFDYVHQQDHAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS-- 275
Query: 63 NTGTANPDVSSLMS-----------------LSSSSSYKGCD-RSFCIRMKSTLTKRGCH 104
+ TANPDVSS+MS + S+ + +GC +S R+ L +
Sbjct: 276 -SSTANPDVSSVMSLSANNLYKGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQ 334
Query: 105 FKSSGYRS-------LDGFAFALGS-------------------DGRFLYISETVS---- 134
+ S R + G A AL D R + VS
Sbjct: 335 YTFSHTRKSAPPLIGMVGLAIALPPPSVHEIRLETDMFVTRINFDFRIAHCEPRVSELLD 394
Query: 135 ----------IY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174
+Y L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVV
Sbjct: 395 YTADELTGKNLYTLCHGEDANRLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVV 454
Query: 175 CSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
C+SKNA+EQNIICVNYVISGREYEN IMDCCQLE+ + GVKRE+ + NDPEN SPDAD
Sbjct: 455 CNSKNAEEQNIICVNYVISGREYENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDAD 512
Query: 235 REDGRNSGDSRN----HDHLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
R +GRN G N H H SPP ED + ++RG H D + QL
Sbjct: 513 RGEGRNHGGPPNQHQEHPHRSPP--EDREDTRGSESEKRGSRHHDSIAQL 560
>gi|383851623|ref|XP_003701331.1| PREDICTED: protein trachealess-like [Megachile rotundata]
Length = 985
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 190/389 (48%), Gaps = 119/389 (30%)
Query: 4 FEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHTE 33
F+ HQGTHILQ VEMTGSSVFDY+HQ DH E
Sbjct: 224 FDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQDHAE 283
Query: 34 LAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMS------- 76
+AEQLGLGL+ S++ E GS + TANPDVSS+MS
Sbjct: 284 VAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSATGLY 340
Query: 77 ----------LSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-------LDGFAF 118
+ S+ + +GC +S R+ L + + S R + G A
Sbjct: 341 KGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQYTFSHTRKSAPPLIGMVGLAI 400
Query: 119 ALGS-------------------DGRFLYISETVS--------------IY--------- 136
AL D R + VS +Y
Sbjct: 401 ALPPPSVHEIRLETDMFVTRINFDFRIAHCEPRVSELLDYTADELTGKNLYTLCHGEDAN 460
Query: 137 -LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGR
Sbjct: 461 RLRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGR 520
Query: 196 EYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLS 251
EYEN IMDCCQLE+ + GVKRE+ NDPEN SPDAD +GRN G N H H S
Sbjct: 521 EYENLIMDCCQLEEGVM--GVKREDAVGNDPENGSPDADGGEGRNHGGPPNQHQEHPHRS 578
Query: 252 PPDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
PP ED + ++R H D++ QL
Sbjct: 579 PP--EDREETRGSESEKRSSRHHDNIAQL 605
>gi|242025337|ref|XP_002433081.1| Neuronal PAS domain-containing protein, putative [Pediculus humanus
corporis]
gi|212518608|gb|EEB20343.1| Neuronal PAS domain-containing protein, putative [Pediculus humanus
corporis]
Length = 801
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 182/381 (47%), Gaps = 104/381 (27%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FEQHQGTHILQ VEM+GSS+FDYIH +D
Sbjct: 151 IEMFEQHQGTHILQSMDGFALVLGADGRLLYVSETVSIYLGLSQVEMSGSSIFDYIHHSD 210
Query: 31 HTELAEQLGLGLSQGHGLASP-----------GSANSEEGSGMNTGTANP----DVSSLM 75
H E+AEQLGLGLSQ GL+SP G+AN + + M+ +++ D + +
Sbjct: 211 HAEMAEQLGLGLSQSQGLSSPSSGNDDVNSSSGTANPDVATQMSISSSSMYKGLDRAFCI 270
Query: 76 SLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRSL--------------------- 113
+ S+ + +GC +S R+ L + + S R
Sbjct: 271 RMKSTLTKRGCHFKSSGYRVVLLLCRLRPQYTFSHSRKSPPPLLGMVALAIALPPPSVHE 330
Query: 114 -----DGFAFALGSDGRFLYISETVSIYLGLSQWQV------------------------ 144
D F + D R + VS L + ++
Sbjct: 331 IRLESDMFVTRINFDFRIAHCEPRVSELLDYTAEELTGRNLYTLCHGEDANKLRKCHIDL 390
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
INKGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQN+ICVNYV+S REY + +MDC
Sbjct: 391 INKGQVLTHYYRLMNKSGGYTWIQTCATVVCNSKNAEEQNVICVNYVLSAREYGHLVMDC 450
Query: 205 CQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGDN 264
CQLE+ +KRE + DPEN SPDAD+ H SPP+ E + E +
Sbjct: 451 CQLEN--TNPTIKRE--TRQDPENGSPDADQGGNGGPASFTPDSHNSPPNSEGRSPESPS 506
Query: 265 SGDQRGRNHLDHVTQLHNIST 285
R D TQL ST
Sbjct: 507 EKQTRP----DQTTQLQGTST 523
>gi|345485710|ref|XP_001606407.2| PREDICTED: protein trachealess-like [Nasonia vitripennis]
Length = 681
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 187/392 (47%), Gaps = 119/392 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+++FEQ GTHILQ VEMTGSS+FDY+HQ D
Sbjct: 178 VDMFEQLHGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYVHQHD 237
Query: 31 HTELAEQLGLGLSQGHGLASPGS-----------ANSEEGSGMNTGTANPDVSSL----- 74
H E+AEQLGLGL+ + P S A+ E GS + TANPDVSS+
Sbjct: 238 HAEVAEQLGLGLTSSSSSSGPHSSSSGLASPSSGASEEHGS---SSTANPDVSSVMSLTA 294
Query: 75 ------------MSLSSSSSYKGCDRS--------FCIRMKSTLTKRGCHFKSSGYRSLD 114
+ + S+ + +GC R++ T + +
Sbjct: 295 SGLYKGYDRAFCVRMKSTLTKRGCHFKSSGYRVVLLLCRLRPQYTFSHSRKSAPPLMGMV 354
Query: 115 GFAFALGS-------------------DGRFLYISETVS--------------IY----- 136
G A AL D R + VS +Y
Sbjct: 355 GLAIALPPPSVHEIRLEADMFVTRINFDFRIAHCEPKVSELLDYTADELTGKNLYTLCHG 414
Query: 137 -----LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191
L S +I+KGQ+LTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYV
Sbjct: 415 EDANRLRKSHMDLIHKGQILTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYV 474
Query: 192 ISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH---- 247
ISGREY N IMDCCQLED + GVKRE+ + NDPEN SPDADR +GR+SG N
Sbjct: 475 ISGREYANLIMDCCQLEDGVT--GVKREDAAGNDPENGSPDADRGEGRSSGGPPNQHPEH 532
Query: 248 -DHLSPPDIEDGTSEGDNSGDQRGRNHLDHVT 278
H SP D D T + RG H D+V
Sbjct: 533 PPHRSPHDDRDETRGSETDVPGRGGRHHDNVV 564
>gi|195066157|ref|XP_001996783.1| GH23748 [Drosophila grimshawi]
gi|193891620|gb|EDV90486.1| GH23748 [Drosophila grimshawi]
Length = 490
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 159/321 (49%), Gaps = 122/321 (38%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 167 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 226
Query: 31 HTELAEQLGLGLSQGHGLAS---------------------PGSANSEEGSGMNTGTANP 69
H+E+AEQLGL L+ G G P S S++GSG + GT NP
Sbjct: 227 HSEIAEQLGLSLTSGSGGGGGVGGGGGGSGGSGSGAAGLASPTSGASDDGSGTH-GTNNP 285
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL---------------- 113
DV++ M+ +S+S YKG DRSFCIRMKSTLTKRGCHFKSSGYR +
Sbjct: 286 DVAASMTQASTSGYKGYDRSFCIRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHTR 345
Query: 114 ----------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
D F + D R + VS L + ++
Sbjct: 346 KSQPPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRIAHCEPRVSDLLDYTPEDLV 405
Query: 146 NK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNAD 181
NK GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNAD
Sbjct: 406 NKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNAD 465
Query: 182 EQNIICVNYVISGREYENFIM 202
EQNIICVNYVI R Y ++ M
Sbjct: 466 EQNIICVNYVI--RYYYSYQM 484
>gi|340722623|ref|XP_003399703.1| PREDICTED: protein trachealess-like isoform 2 [Bombus terrestris]
Length = 907
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 8/148 (5%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGRE
Sbjct: 383 LRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGRE 442
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLSP 252
+EN IMDCCQLE+ + GVKRE+ + NDPEN SPDADR +GRN G N H H SP
Sbjct: 443 FENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDADRGEGRNHGGPPNQHQEHPHRSP 500
Query: 253 PDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
P ED + ++RG H D++ QL
Sbjct: 501 P--EDREDTRGSESEKRGSRHHDNIAQL 526
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 90/151 (59%), Gaps = 43/151 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
ME F+ HQGTHILQ VEMTGSSVFDY+HQ D
Sbjct: 142 MEHFDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQD 201
Query: 31 HTELAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMSLSSS 80
H E+AEQLGLGL+ S++ E GS + TANPDVSS+MSLS++
Sbjct: 202 HAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSAN 258
Query: 81 SSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
+ YKG DR+FC+RMKSTLTKRGCHFKSSGYR
Sbjct: 259 NLYKGYDRAFCVRMKSTLTKRGCHFKSSGYR 289
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 155 QSLDGFAMAVAADGRFLYISETVSIYLGLSQVEM 188
>gi|350424337|ref|XP_003493762.1| PREDICTED: protein trachealess-like isoform 2 [Bombus impatiens]
Length = 907
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 8/148 (5%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGRE
Sbjct: 383 LRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGRE 442
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLSP 252
+EN IMDCCQLE+ + GVKRE+ + NDPEN SPDADR +GRN G N H H SP
Sbjct: 443 FENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDADRGEGRNHGGPPNQHQEHPHRSP 500
Query: 253 PDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
P ED + ++RG H D++ QL
Sbjct: 501 P--EDREDTRGSESEKRGSRHHDNIAQL 526
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 90/151 (59%), Gaps = 43/151 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
ME F+ HQGTHILQ VEMTGSSVFDY+HQ D
Sbjct: 142 MEHFDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQD 201
Query: 31 HTELAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMSLSSS 80
H E+AEQLGLGL+ S++ E GS + TANPDVSS+MSLS++
Sbjct: 202 HAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSAN 258
Query: 81 SSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
+ YKG DR+FC+RMKSTLTKRGCHFKSSGYR
Sbjct: 259 NLYKGYDRAFCVRMKSTLTKRGCHFKSSGYR 289
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 155 QSLDGFAMAVAADGRFLYISETVSIYLGLSQVEM 188
>gi|340722621|ref|XP_003399702.1| PREDICTED: protein trachealess-like isoform 1 [Bombus terrestris]
Length = 990
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 8/148 (5%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGRE
Sbjct: 466 LRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGRE 525
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLSP 252
+EN IMDCCQLE+ + GVKRE+ + NDPEN SPDADR +GRN G N H H SP
Sbjct: 526 FENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDADRGEGRNHGGPPNQHQEHPHRSP 583
Query: 253 PDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
P ED + ++RG H D++ QL
Sbjct: 584 P--EDREDTRGSESEKRGSRHHDNIAQL 609
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 90/151 (59%), Gaps = 43/151 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
ME F+ HQGTHILQ VEMTGSSVFDY+HQ D
Sbjct: 225 MEHFDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQD 284
Query: 31 HTELAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMSLSSS 80
H E+AEQLGLGL+ S++ E GS + TANPDVSS+MSLS++
Sbjct: 285 HAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSAN 341
Query: 81 SSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
+ YKG DR+FC+RMKSTLTKRGCHFKSSGYR
Sbjct: 342 NLYKGYDRAFCVRMKSTLTKRGCHFKSSGYR 372
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 238 QSLDGFAMAVAADGRFLYISETVSIYLGLSQVEM 271
>gi|350424334|ref|XP_003493761.1| PREDICTED: protein trachealess-like isoform 1 [Bombus impatiens]
Length = 935
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 8/148 (5%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I+KGQVLTHYYRLMNK+GGYTW+Q+CATVVC+SKNA+EQNIICVNYVISGRE
Sbjct: 411 LRKSHIDLIHKGQVLTHYYRLMNKSGGYTWLQTCATVVCNSKNAEEQNIICVNYVISGRE 470
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN----HDHLSP 252
+EN IMDCCQLE+ + GVKRE+ + NDPEN SPDADR +GRN G N H H SP
Sbjct: 471 FENLIMDCCQLEEGVM--GVKREDAAGNDPENGSPDADRGEGRNHGGPPNQHQEHPHRSP 528
Query: 253 PDIEDGTSEGDNSGDQRGRNHLDHVTQL 280
P ED + ++RG H D++ QL
Sbjct: 529 P--EDREDTRGSESEKRGSRHHDNIAQL 554
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 90/151 (59%), Gaps = 43/151 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
ME F+ HQGTHILQ VEMTGSSVFDY+HQ D
Sbjct: 170 MEHFDVHQGTHILQSLDGFAMAVAADGRFLYISETVSIYLGLSQVEMTGSSVFDYVHQQD 229
Query: 31 HTELAEQLGLGLSQGHGLASPGSANS----------EEGSGMNTGTANPDVSSLMSLSSS 80
H E+AEQLGLGL+ S++ E GS + TANPDVSS+MSLS++
Sbjct: 230 HAEVAEQLGLGLTSSTSSGPHSSSSGLASPSSAASEEHGS---SSTANPDVSSVMSLSAN 286
Query: 81 SSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
+ YKG DR+FC+RMKSTLTKRGCHFKSSGYR
Sbjct: 287 NLYKGYDRAFCVRMKSTLTKRGCHFKSSGYR 317
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFAMAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|116007754|ref|NP_001036575.1| trachealess, isoform B [Drosophila melanogaster]
gi|113194869|gb|ABI31226.1| trachealess, isoform B [Drosophila melanogaster]
gi|381388785|gb|AFG26510.1| FI17826p1 [Drosophila melanogaster]
Length = 929
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 177/388 (45%), Gaps = 127/388 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANP--- 69
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NP
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 70 --------------DVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-- 112
D S + + S+ + +GC +S R+ L K + S R
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQ 348
Query: 113 -----LDGFAFALGS-------------------DGRFLYISETVSIYLGLSQWQVINK- 147
+ A AL D R + VS L S ++NK
Sbjct: 349 PPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKS 408
Query: 148 -----------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQN
Sbjct: 409 LYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQN 468
Query: 185 IICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS 244
IICVNYVIS RE EN I+DCCQLE +K EE ND + SP D NS
Sbjct: 469 IICVNYVISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS--- 523
Query: 245 RNHDHLSPPDIEDGTSEGDNSG-DQRGR 271
HLS D++ + + D+ G RGR
Sbjct: 524 ----HLSAGDMKLNSPKTDSEGHSHRGR 547
>gi|342672107|gb|AEL30808.1| FI13840p1 [Drosophila melanogaster]
Length = 929
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 177/388 (45%), Gaps = 127/388 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANP--- 69
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NP
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 70 --------------DVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-- 112
D S + + S+ + +GC +S R+ L K + S R
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQ 348
Query: 113 -----LDGFAFALGS-------------------DGRFLYISETVSIYLGLSQWQVINK- 147
+ A AL D R + VS L S ++NK
Sbjct: 349 PPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKS 408
Query: 148 -----------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQN
Sbjct: 409 LYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQN 468
Query: 185 IICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS 244
IICVNYVIS RE EN I+DCCQLE +K EE ND + SP D NS
Sbjct: 469 IICVNYVISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS--- 523
Query: 245 RNHDHLSPPDIEDGTSEGDNSG-DQRGR 271
HLS D++ + + D+ G RGR
Sbjct: 524 ----HLSAGDMKLNSPKTDSEGHSHRGR 547
>gi|159884115|gb|ABX00736.1| IP17239p [Drosophila melanogaster]
Length = 929
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 177/388 (45%), Gaps = 127/388 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANP--- 69
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NP
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 70 --------------DVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-- 112
D S + + S+ + +GC +S R+ L K + S R
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQ 348
Query: 113 -----LDGFAFALGS-------------------DGRFLYISETVSIYLGLSQWQVINK- 147
+ A AL D R + VS L S ++NK
Sbjct: 349 PPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKS 408
Query: 148 -----------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQN
Sbjct: 409 LYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQN 468
Query: 185 IICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS 244
IICVNYVIS RE EN I+DCCQLE +K EE ND + SP D NS
Sbjct: 469 IICVNYVISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS--- 523
Query: 245 RNHDHLSPPDIEDGTSEGDNSG-DQRGR 271
HLS D++ + + D+ G RGR
Sbjct: 524 ----HLSAGDMKLNSPKTDSEGHSHRGR 547
>gi|20151809|gb|AAM11264.1| RH17284p [Drosophila melanogaster]
Length = 902
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 177/388 (45%), Gaps = 127/388 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 143 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 202
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANP--- 69
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NP
Sbjct: 203 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 261
Query: 70 --------------DVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-- 112
D S + + S+ + +GC +S R+ L K + S R
Sbjct: 262 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQ 321
Query: 113 -----LDGFAFALGS-------------------DGRFLYISETVSIYLGLSQWQVINK- 147
+ A AL D R + VS L S ++NK
Sbjct: 322 PPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKS 381
Query: 148 -----------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQN
Sbjct: 382 LYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQN 441
Query: 185 IICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS 244
IICVNYVIS RE EN I+DCCQLE +K EE ND + SP D NS
Sbjct: 442 IICVNYVISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS--- 496
Query: 245 RNHDHLSPPDIEDGTSEGDNSG-DQRGR 271
HLS D++ + + D+ G RGR
Sbjct: 497 ----HLSAGDMKLNSPKTDSEGHSHRGR 520
>gi|442629208|ref|NP_001261210.1| trachealess, isoform G [Drosophila melanogaster]
gi|440215074|gb|AGB93905.1| trachealess, isoform G [Drosophila melanogaster]
Length = 923
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 175/381 (45%), Gaps = 119/381 (31%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMN--------- 63
H+E+A+QLGL L+ G G +ASP S S++GSG +
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTHVAASMTQAS 289
Query: 64 -TGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-------LD 114
+G D S + + S+ + +GC +S R+ L K + S R +
Sbjct: 290 TSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRVVLLLCKLRPQYTFSHSRKSQPPLLGMV 349
Query: 115 GFAFALGS-------------------DGRFLYISETVSIYLGLSQWQVINK-------- 147
A AL D R + VS L S ++NK
Sbjct: 350 ALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKSLYSLCHA 409
Query: 148 ----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191
GQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYV
Sbjct: 410 EDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYV 469
Query: 192 ISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLS 251
IS RE EN I+DCCQLE +K EE ND + SP D NS HLS
Sbjct: 470 ISNRENENMILDCCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLS 520
Query: 252 PPDIEDGTSEGDNSG-DQRGR 271
D++ + + D+ G RGR
Sbjct: 521 AGDMKLNSPKTDSEGHSHRGR 541
>gi|357621488|gb|EHJ73300.1| trachealess [Danaus plexippus]
Length = 749
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 95/137 (69%), Gaps = 10/137 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++NKGQVLTHYYR+MNK GGYTW+Q+CATVVCSSKNA+EQNIICVNYVISGREY N +MD
Sbjct: 305 LLNKGQVLTHYYRIMNKLGGYTWMQTCATVVCSSKNAEEQNIICVNYVISGREYPNTVMD 364
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE+ +Q GVKREE + DPEN PDAD G + PP D TS
Sbjct: 365 CCQLEESVQ--GVKREE-TTGDPENGPPDAD-SGGGPPPPRHPAERTEPPSNNDATSSAP 420
Query: 264 NSGDQRGRNHLDHVTQL 280
+ D + H+T+L
Sbjct: 421 PTSD------VTHLTRL 431
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 96/144 (66%), Gaps = 36/144 (25%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
MELFEQHQGTHILQ VEMTGSS+FDY+HQAD
Sbjct: 63 MELFEQHQGTHILQSLDGFALSVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYVHQAD 122
Query: 31 HTELAEQLGLGLSQ--GHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSS-YKGCD 87
H E+AEQLGL L+ G GL+SP S SEEGS GT NPDVS+ M+L++S + ++G D
Sbjct: 123 HAEIAEQLGLSLAGRGGAGLSSPASG-SEEGS--QHGTNNPDVSAQMTLAASGALFRGMD 179
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYR 111
R+FC+RMKSTLTKRGCHFKSSGYR
Sbjct: 180 RAFCVRMKSTLTKRGCHFKSSGYR 203
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA ++ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 76 QSLDGFALSVAADGRFLYISETVSIYLGLSQVEM 109
>gi|30172456|gb|AAO17043.1| neuronal PAS3 transcript variant 1 [Homo sapiens]
Length = 901
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 111 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 170
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 171 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 228
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 229 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 288
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 289 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 348
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 349 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 408
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 409 TPMDIAQL 416
>gi|11545847|ref|NP_071406.1| neuronal PAS domain-containing protein 3 isoform 2 [Homo sapiens]
gi|11415003|gb|AAG35180.1|AF164438_1 basic-helix-loop-helix-PAS protein [Homo sapiens]
Length = 901
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 111 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 170
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 171 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 228
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 229 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 288
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 289 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 348
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 349 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 408
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 409 TPMDIAQL 416
>gi|327263651|ref|XP_003216631.1| PREDICTED: neuronal PAS domain-containing protein 3-like [Anolis
carolinensis]
Length = 903
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 138/307 (44%), Gaps = 103/307 (33%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H G+HILQ VE+TGSSVFDY+H DH
Sbjct: 136 EVFESHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDH 195
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCDR 88
ELAEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ DR
Sbjct: 196 VELAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLAADNDLDR 253
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSL----------------------------------- 113
SF +RMKSTLTKRG H KSSGY+ +
Sbjct: 254 SFFMRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPP 313
Query: 114 ---------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 314 TINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHS 373
Query: 146 -----NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 374 HLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDT 433
Query: 201 IMDCCQL 207
MD QL
Sbjct: 434 PMDIAQL 440
>gi|119586334|gb|EAW65930.1| neuronal PAS domain protein 3 [Homo sapiens]
Length = 903
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 113 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 172
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 173 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 230
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 231 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 290
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 291 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 350
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 351 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 410
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 411 TPMDIAQL 418
>gi|260064030|ref|NP_001159365.1| neuronal PAS domain-containing protein 3 isoform 4 [Homo sapiens]
gi|12328445|dbj|BAB21221.1| NPAS3 (MOP6) [Homo sapiens]
gi|208966854|dbj|BAG73441.1| neuronal PAS domain protein 3 [synthetic construct]
Length = 903
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 113 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 172
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 173 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 230
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 231 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 290
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 291 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 350
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 351 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 410
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 411 TPMDIAQL 418
>gi|126281959|ref|XP_001363671.1| PREDICTED: neuronal PAS domain-containing protein 3 isoform 2
[Monodelphis domestica]
Length = 938
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 265
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 266 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 325
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 326 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 385
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 386 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 445
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 446 TPMDIAQL 453
>gi|390468991|ref|XP_002753842.2| PREDICTED: neuronal PAS domain-containing protein 3 isoform 1
[Callithrix jacchus]
Length = 939
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 150 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 209
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 210 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNALE 267
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 327
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 387
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 447
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 448 TPMDIAQL 455
>gi|41281831|ref|NP_775182.1| neuronal PAS domain-containing protein 3 isoform 3 [Homo sapiens]
gi|27372857|dbj|BAC53754.1| NPAS3 variant [Homo sapiens]
gi|148921820|gb|AAI46318.1| Neuronal PAS domain protein 3 [synthetic construct]
Length = 920
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 130 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 189
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 190 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 247
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 248 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 307
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 308 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 367
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 368 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 427
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 428 TPMDIAQL 435
>gi|402875930|ref|XP_003901744.1| PREDICTED: neuronal PAS domain-containing protein 3 [Papio anubis]
Length = 961
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 173 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 232
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 233 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 290
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 291 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 350
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 351 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 410
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 411 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 470
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 471 TPMDIAQL 478
>gi|395838298|ref|XP_003792053.1| PREDICTED: neuronal PAS domain-containing protein 3 [Otolemur
garnettii]
Length = 915
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 131 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 190
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 191 HVEMAEQLGMKLPPGRGLLSQGAA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 248
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 249 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 308
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 309 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 368
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 369 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 428
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 429 TPMDIAQL 436
>gi|380805789|gb|AFE74770.1| neuronal PAS domain-containing protein 3 isoform 4, partial [Macaca
mulatta]
Length = 655
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 104 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 163
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 164 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 221
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 222 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 281
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 282 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 341
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 342 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 401
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 402 TPMDIAQL 409
>gi|260064034|ref|NP_001158221.1| neuronal PAS domain-containing protein 3 isoform 1 [Homo sapiens]
gi|38604888|sp|Q8IXF0.1|NPAS3_HUMAN RecName: Full=Neuronal PAS domain-containing protein 3;
Short=Neuronal PAS3; AltName:
Full=Basic-helix-loop-helix-PAS protein MOP6; AltName:
Full=Class E basic helix-loop-helix protein 12;
Short=bHLHe12; AltName: Full=Member of PAS protein 6;
AltName: Full=PAS domain-containing protein 6
gi|27372861|dbj|BAC53756.1| NPAS3 [Homo sapiens]
Length = 933
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 143 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 202
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 203 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 260
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 261 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 320
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 321 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 380
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 381 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 440
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 441 TPMDIAQL 448
>gi|363734502|ref|XP_421232.3| PREDICTED: neuronal PAS domain-containing protein 3 [Gallus gallus]
Length = 1034
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 138/308 (44%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 269 IEVFESHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 328
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 329 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 386
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 387 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 446
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 447 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 506
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA E+NII VNY++S EY++
Sbjct: 507 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAVNAKNASEKNIIWVNYLLSNPEYKD 566
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 567 TPMDIAQL 574
>gi|440903756|gb|ELR54370.1| Neuronal PAS domain-containing protein 3, partial [Bos grunniens
mutus]
Length = 919
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 127 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 186
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 187 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 244
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 245 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 304
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 305 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 364
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 365 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 424
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 425 TPMDIAQL 432
>gi|297297656|ref|XP_001108628.2| PREDICTED: neuronal PAS domain-containing protein 3 [Macaca
mulatta]
Length = 936
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 150 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 209
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 210 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 267
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 327
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 387
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 447
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 448 TPMDIAQL 455
>gi|296475377|tpg|DAA17492.1| TPA: neuronal PAS domain protein 3 [Bos taurus]
Length = 933
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 140 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 199
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 200 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 257
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 258 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 317
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 318 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 377
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 378 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 437
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 438 TPMDIAQL 445
>gi|449504391|ref|XP_002199739.2| PREDICTED: neuronal PAS domain-containing protein 3 [Taeniopygia
guttata]
Length = 986
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 139/310 (44%), Gaps = 107/310 (34%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 217 IEVFESHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 276
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG-----TANPDVSSLMSLSSSSSYKG 85
H E+AEQLG+ L G GL S G+A E+G+ + T P S+ SL ++ +
Sbjct: 277 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTNPSLLTTDN--T 332
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------------------- 113
+RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 333 LERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHAL 392
Query: 114 ------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI---------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 393 PPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGI 452
Query: 146 --------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA E+NII VNY++S EY
Sbjct: 453 RHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAVNAKNASEKNIIWVNYLLSNPEY 512
Query: 198 ENFIMDCCQL 207
++ MD QL
Sbjct: 513 KDTPMDIAQL 522
>gi|359077866|ref|XP_002696766.2| PREDICTED: neuronal PAS domain-containing protein 3 [Bos taurus]
Length = 935
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 142 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 201
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 202 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 259
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 260 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 319
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 320 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 379
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 380 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 439
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 440 TPMDIAQL 447
>gi|332842053|ref|XP_509895.3| PREDICTED: neuronal PAS domain-containing protein 3 [Pan
troglodytes]
Length = 937
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 150 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 209
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 210 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 267
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 327
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 387
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 447
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 448 TPMDIAQL 455
>gi|348572221|ref|XP_003471892.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3-like [Cavia porcellus]
Length = 929
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 265
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 266 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 325
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 326 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 385
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 386 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 445
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 446 TPMDIAQL 453
>gi|426376664|ref|XP_004055115.1| PREDICTED: neuronal PAS domain-containing protein 3 [Gorilla
gorilla gorilla]
Length = 878
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 150 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 209
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 210 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 267
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 327
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 387
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 447
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 448 TPMDIAQL 455
>gi|395503613|ref|XP_003756158.1| PREDICTED: neuronal PAS domain-containing protein 3 [Sarcophilus
harrisii]
Length = 876
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 130 IEVFEAHLGSHILQTFESFLFSLNLQGNFLFVSESLSLYIGSVQVELTGSSVFDYVHPGD 189
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 190 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 247
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 248 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 307
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 308 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 367
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 368 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 427
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 428 TPMDIAQL 435
>gi|397501192|ref|XP_003821275.1| PREDICTED: neuronal PAS domain-containing protein 3 [Pan paniscus]
Length = 841
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 131 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 190
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 191 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 248
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 249 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 308
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 309 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 368
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 369 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 428
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 429 TPMDIAQL 436
>gi|395745779|ref|XP_002824709.2| PREDICTED: neuronal PAS domain-containing protein 3 [Pongo abelii]
Length = 962
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 173 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 232
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+ +E+G+ + ++ P+ S S ++ +
Sbjct: 233 HVEMAEQLGMKLPPGRGLLSQGT--TEDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 290
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 291 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 350
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 351 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 410
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 411 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 470
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 471 TPMDIAQL 478
>gi|113197972|gb|AAI20886.1| Npas3 protein [Mus musculus]
Length = 893
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 137/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 120 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 179
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S S ++ +RS
Sbjct: 180 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS 239
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 240 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPT 299
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI-------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 300 INEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 359
Query: 146 ----NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 360 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 419
Query: 202 MDCCQL 207
MD QL
Sbjct: 420 MDIAQL 425
>gi|38605073|sp|Q9QZQ0.1|NPAS3_MOUSE RecName: Full=Neuronal PAS domain-containing protein 3;
Short=Neuronal PAS3; AltName:
Full=Basic-helix-loop-helix-PAS protein MOP6; AltName:
Full=Member of PAS protein 6
gi|6492334|gb|AAF14283.1|AF173871_1 neuronal PAS3 [Mus musculus]
Length = 925
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 137/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S S ++ +RS
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS 267
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVPLSHGRTVPSQIMGLVVVAHALPPPT 327
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI-------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 INEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 387
Query: 146 ----NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 447
Query: 202 MDCCQL 207
MD QL
Sbjct: 448 MDIAQL 453
>gi|443698780|gb|ELT98590.1| hypothetical protein CAPTEDRAFT_184580, partial [Capitella teleta]
Length = 667
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 155/357 (43%), Gaps = 124/357 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
EL+E H GTHILQ VEMTGSS+FDYIH DH
Sbjct: 59 ELYEAHIGTHILQSLDGFVFALSNDGRFLYISETVSIYLGLSQVEMTGSSIFDYIHYDDH 118
Query: 32 TELAEQLGLGLSQGHG-----LASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGC 86
ELAEQLGL S +S S N E+ D +S+M+ S S KG
Sbjct: 119 RELAEQLGLSSSTSSPSGPTRFSSSSSTNDEK-----------DDASIMNPSPS---KGY 164
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGYRSL--------------------------------- 113
+R FCIRMKSTLTKRG H K SGYR +
Sbjct: 165 ERCFCIRMKSTLTKRGVHVKCSGYRVVQVLARMRPQFSFSLTRKHSPPLLGLVAMAIALP 224
Query: 114 -----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVIN---------------- 146
D F L + + +Y +S + +S + N
Sbjct: 225 PPTITELVIDSDMFVTRLSPELKVIYCEPRISDMMDMSADDLTNRNLYEYCHAEDLQKLR 284
Query: 147 --------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
KGQVLT YYRLMNK+GGY W+Q+CAT++C SKNA+EQNII +NYV+SG E+
Sbjct: 285 KAHVDLMTKGQVLTDYYRLMNKHGGYVWLQTCATIICHSKNAEEQNIIAINYVLSGVEHS 344
Query: 199 NFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRN--SGDSRNHDHLSPP 253
+M+ +E Y + EP +D P + R+ S S +HD PP
Sbjct: 345 GCVMN---MEQY--KVVSPSSEPDQSDHSESEPPLRDKGARDMKSHHSASHDDTLPP 396
>gi|154090947|ref|NP_038808.2| neuronal PAS domain-containing protein 3 [Mus musculus]
gi|189442119|gb|AAI67248.1| Neuronal PAS domain protein 3 [synthetic construct]
Length = 925
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 137/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S S ++ +RS
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS 267
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPT 327
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI-------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 INEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 387
Query: 146 ----NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 447
Query: 202 MDCCQL 207
MD QL
Sbjct: 448 MDIAQL 453
>gi|345803910|ref|XP_003435125.1| PREDICTED: neuronal PAS domain-containing protein 3 [Canis lupus
familiaris]
Length = 910
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 131 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 190
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 191 HVEMAEQLGMKLPPGRGLLSQGAA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 248
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 249 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 308
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 309 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 368
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 369 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 428
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 429 TPMDIAQL 436
>gi|426248830|ref|XP_004018161.1| PREDICTED: neuronal PAS domain-containing protein 3 [Ovis aries]
Length = 906
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 175 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 234
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 235 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 292
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 293 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 352
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 353 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 412
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 413 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 472
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 473 TPMDIAQL 480
>gi|410926215|ref|XP_003976574.1| PREDICTED: neuronal PAS domain-containing protein 3-like, partial
[Takifugu rubripes]
Length = 832
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 43/243 (17%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TGS VFDYIH DH E+AEQLG+ L G G++ A +E+G+ + +++ +
Sbjct: 30 QVELTGSGVFDYIHPGDHVEMAEQLGMKLPPGRGMSLSQGAVNEDGASSASSSSHSETPE 89
Query: 74 LMSLSSSSSYKG---CDRSFCIRMKSTLTKRGCHFKSSGYRSLD---------------- 114
+ SS S +RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 90 PVESSSPSLLAPDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMALTHSRS 149
Query: 115 ---------GFAFALGS--------DGRFLYISETVSIYL-------GLSQWQVINKGQV 150
A AL D + + + + G + +V+NKGQ
Sbjct: 150 VPNQIMGMVAVAHALPPPTLNEVRIDCQMFVTRVNMDLKIVYCENRYGPAGPRVMNKGQC 209
Query: 151 LTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDY 210
+T YYR + KNGGY W+QS AT+ ++KNA E+NI+ VNYV+S EY++ MD QL +
Sbjct: 210 ITKYYRWIQKNGGYIWIQSSATIAINAKNASEKNIVWVNYVLSNHEYKDTPMDIAQLPNL 269
Query: 211 IQQ 213
++
Sbjct: 270 PEK 272
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 30/37 (81%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKG 148
SLDGF FAL +GRFLYISETVSIYLGLSQ ++ G
Sbjct: 1 SLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSG 37
>gi|338717972|ref|XP_003363735.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3-like [Equus caballus]
Length = 828
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 132 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 191
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 192 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 249
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 250 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 309
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 310 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 369
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 370 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 429
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 430 TPMDIAQL 437
>gi|403264844|ref|XP_003924677.1| PREDICTED: neuronal PAS domain-containing protein 3 [Saimiri
boliviensis boliviensis]
Length = 841
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 215 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 274
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 275 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNALE 332
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 333 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 392
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 393 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 452
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 453 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 512
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 513 TPMDIAQL 520
>gi|432941069|ref|XP_004082814.1| PREDICTED: neuronal PAS domain-containing protein 3-like [Oryzias
latipes]
Length = 946
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 140/311 (45%), Gaps = 105/311 (33%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H G+HILQ VE+TGSSVFDYIH DH
Sbjct: 118 EIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 177
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG-----TANPDVSSLMSLSSSSSYKGC 86
E+AEQLG+ L G G++ +A +E+G+ + T P SS SL + +
Sbjct: 178 VEMAEQLGMKLPPGRGMSLSQAAINEDGASSASSSSHSETPEPVESSSPSLLAPDN--SL 235
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGYRSL--------------------------------- 113
+RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 236 ERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRIRMALTHSRSVPNQIMGMVVVAHALP 295
Query: 114 -----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI----------------- 145
F + D + +Y +S Y+ L+ +++
Sbjct: 296 PPTINEVRIDCQMFVTRVNMDLKIVYCENRISDYMDLTPVEIVGKRCYQFIHAEDVEGIR 355
Query: 146 -------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
NKGQ +T YYR + KNGGY W+QS AT+ ++KN+ E+NII VNYV+S EY+
Sbjct: 356 QSHLDLLNKGQCVTKYYRWIQKNGGYIWIQSSATIAVNTKNSSEKNIIWVNYVLSNPEYK 415
Query: 199 NFIMDCCQLED 209
+ +D QL +
Sbjct: 416 DTPIDISQLPN 426
>gi|410962132|ref|XP_003987629.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3 [Felis catus]
Length = 811
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 149 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 208
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 209 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 266
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 267 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 326
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 327 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 386
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 387 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 446
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 447 TPMDIAQL 454
>gi|348527488|ref|XP_003451251.1| PREDICTED: neuronal PAS domain-containing protein 3-like
[Oreochromis niloticus]
Length = 1273
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 139/315 (44%), Gaps = 105/315 (33%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H G+HILQ VE+TGSSVFDYIH DH
Sbjct: 427 EIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 486
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG-----TANPDVSSLMSLSSSSSYKGC 86
E+AEQLG+ L G G++ A +E+G+ + T P SS SL + +
Sbjct: 487 VEMAEQLGMKLPPGRGMSLSQGAVNEDGASSASSSSHSETPEPVESSSPSLLAPDN--SL 544
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGYRSL--------------------------------- 113
+RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 545 ERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMALTHSRSVPNQIMGMVAVAHALP 604
Query: 114 -----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI----------------- 145
F + D + +Y +S Y+ L+ ++
Sbjct: 605 PPTINEVRIDCQMFVTRVNMDLKIVYCENRISDYMDLTPVDIVGKRCYQFIHAEDVEGIR 664
Query: 146 -------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
NKGQ +T YYR + KNGGY W+QS AT+ + KNA E+NII VNYV+S EY+
Sbjct: 665 QSHLDLMNKGQCVTKYYRWIQKNGGYIWIQSSATIAVNVKNASEKNIIWVNYVLSNPEYK 724
Query: 199 NFIMDCCQLEDYIQQ 213
+ MD QL + ++
Sbjct: 725 DTPMDIAQLPNLPEK 739
>gi|119913901|ref|XP_605440.3| PREDICTED: neuronal PAS domain-containing protein 3 [Bos taurus]
Length = 784
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 128/265 (48%), Gaps = 73/265 (27%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPD 70
QVE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+A E+G+ + ++ P+
Sbjct: 34 QVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPE 91
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----------------- 113
S S ++ +RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 92 PVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRT 151
Query: 114 ---------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI- 145
F + D +Y +S Y+ L+ ++
Sbjct: 152 VPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVG 211
Query: 146 -----------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE 182
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E
Sbjct: 212 KRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANE 271
Query: 183 QNIICVNYVISGREYENFIMDCCQL 207
+NII VNY++S EY++ MD QL
Sbjct: 272 KNIIWVNYLLSNPEYKDTPMDIAQL 296
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 5 SLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 37
>gi|170040702|ref|XP_001848129.1| neuronal pas domain protein [Culex quinquefasciatus]
gi|167864312|gb|EDS27695.1| neuronal pas domain protein [Culex quinquefasciatus]
Length = 642
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 133/301 (44%), Gaps = 106/301 (35%)
Query: 2 ELFEQHQGTHIL------------------------------QVEMTGSSVFDYIHQADH 31
++FE H GTHIL Q+E+TGSS+FDY+H+ DH
Sbjct: 257 DIFENHIGTHILHLLDGFSLATSVDGRFLYISETVTNCLGLSQIELTGSSIFDYVHKDDH 316
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
EL LG+ + + E + T P+ S S++G DR+ C
Sbjct: 317 AELEHHLGIKKNPDYS----DYVYPEHSTPSPTKDVKPE-------HLSESFQGDDRALC 365
Query: 92 IRMKSTLTKRGCHFKSSGYRSL-------------------------------------- 113
IRMKSTLTKRGCHFKSSGYR +
Sbjct: 366 IRMKSTLTKRGCHFKSSGYRVILLLCRLRKRNADIDQRQSMIGSVGIGMELLPPALHEIK 425
Query: 114 ---DGFAFALGSDGRFLYISETVSIYLGL------------------------SQWQVIN 146
D F F G D ++ ++ +LG S ++I
Sbjct: 426 LESDMFTFRTGLDLAIVHCEARITSFLGYSAEELLGKSIYSLCHGQDIEKLRRSHRELIE 485
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQ+LT +YR+++K GY W+Q+C T+VC SK+A +Q ++CVNYVISG E ++ I+D Q
Sbjct: 486 KGQILTPFYRILHKTAGYFWIQTCYTMVCQSKSAADQTVVCVNYVISGPERDSPILDITQ 545
Query: 207 L 207
+
Sbjct: 546 V 546
>gi|444722495|gb|ELW63187.1| Neuronal PAS domain-containing protein 3 [Tupaia chinensis]
Length = 883
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 128/265 (48%), Gaps = 73/265 (27%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPD 70
QVE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+A E+G+ + ++ P+
Sbjct: 82 QVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPE 139
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----------------- 113
S S ++ +RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 140 PVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRT 199
Query: 114 ---------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI- 145
F + D +Y +S Y+ L+ ++
Sbjct: 200 VPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVG 259
Query: 146 -----------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE 182
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E
Sbjct: 260 KRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANE 319
Query: 183 QNIICVNYVISGREYENFIMDCCQL 207
+NII VNY++S EY++ MD QL
Sbjct: 320 KNIIWVNYLLSNPEYKDTPMDIAQL 344
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 52 QSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 85
>gi|405959134|gb|EKC25198.1| Protein trachealess [Crassostrea gigas]
Length = 890
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 152/349 (43%), Gaps = 105/349 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
M++F+ HQG HILQ VEMTGSS+FDY+H D
Sbjct: 102 MDIFDNHQGAHILQSLDGFAFILANDGRFLYISETVSIYLGLSQVEMTGSSIFDYVHVQD 161
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSG---MNTGTANPDVSSLMSLSSSSSYKGCD 87
H EL EQLGL + ++ S +S+ +G P ++ + + KG
Sbjct: 162 HQELLEQLGLSTTNTGSVSGSPSPDSQSDAGSAPSTPRPTTPPTPDRTNIMAPNPEKGSK 221
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
R+FC+RMKSTLTKRG H ++SGYR +
Sbjct: 222 RTFCLRMKSTLTKRGVHIRTSGYRVVYITGHIRPQPCFGVNRKLPSHVLGLVGMAVAMPP 281
Query: 114 ----------DGFAFALGSDGRFLYISETVS--------------IY----------LGL 139
D F L D +Y +S IY +
Sbjct: 282 PTITELRIESDTFIMRLNPDFSIIYCDTLISQLCDWSSDDVIGKPIYDLCHPADLNTMKR 341
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
+ ++ KGQVL+ Y+R++NKNGG+ W Q CA+ + SSK +D ++ + Y++SG EYEN
Sbjct: 342 THKDLLMKGQVLSDYFRMINKNGGHVWAQICASTLYSSKTSDTHTVLTIIYILSGIEYEN 401
Query: 200 FIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHD 248
+MD CQL I++ K E S+ D SP + +DG S S++ D
Sbjct: 402 CVMDICQLPTSIKKELDK--ESSSKDLV--SPRDESKDGEESRHSKSPD 446
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 77 LSSSSSYKGCDRSFCIR---MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETV 133
L++ S+KG R I M +G H +SLDGFAF L +DGRFLYISETV
Sbjct: 82 LTNGKSFKGPGRRRNISNIAMDIFDNHQGAHI----LQSLDGFAFILANDGRFLYISETV 137
Query: 134 SIYLGLSQWQV 144
SIYLGLSQ ++
Sbjct: 138 SIYLGLSQVEM 148
>gi|345306264|ref|XP_001512327.2| PREDICTED: neuronal PAS domain-containing protein 3-like
[Ornithorhynchus anatinus]
Length = 633
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 138/308 (44%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 138 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 197
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 198 HVEMAEQLGMKLPPGRGLLSQGAA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 255
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 256 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 315
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK---------------- 147
F + D +Y +S Y+ L+ ++ K
Sbjct: 316 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 375
Query: 148 --------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
GQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 376 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 435
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 436 TPMDIAQL 443
>gi|392340999|ref|XP_003754219.1| PREDICTED: neuronal PAS domain-containing protein 3 [Rattus
norvegicus]
Length = 816
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 135/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 39 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 98
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S ++ +RS
Sbjct: 99 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERS 158
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 159 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPT 218
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------------------ 147
F + D +Y ++ Y+ L+ ++ K
Sbjct: 219 INEVRIDCHMFVTRVNMDLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 278
Query: 148 ------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
GQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 279 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 338
Query: 202 MDCCQL 207
MD QL
Sbjct: 339 MDIAQL 344
>gi|441595556|ref|XP_004087250.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3 [Nomascus leucogenys]
Length = 819
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 136/308 (44%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ V + GSS+FDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVRLGGSSIFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 265
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 266 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 325
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 326 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 385
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY+
Sbjct: 386 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKE 445
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 446 TPMDIAQL 453
>gi|392348827|ref|XP_003750208.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3 [Rattus norvegicus]
Length = 931
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 135/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 154 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 213
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S ++ +RS
Sbjct: 214 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERS 273
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 274 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPT 333
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------------------ 147
F + D +Y ++ Y+ L+ ++ K
Sbjct: 334 INEVRIDCHMFVTRVNMDLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 393
Query: 148 ------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
GQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 394 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 453
Query: 202 MDCCQL 207
MD QL
Sbjct: 454 MDIAQL 459
>gi|347963073|ref|XP_311103.5| AGAP000056-PA [Anopheles gambiae str. PEST]
gi|333467373|gb|EAA06130.5| AGAP000056-PA [Anopheles gambiae str. PEST]
Length = 604
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 136/307 (44%), Gaps = 106/307 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H GTHILQ VEMTGSS+FDY+H+ DH
Sbjct: 133 EMFETHLGTHILQSLDGFAISTGVDGRFLYISETVSIYLGLSQVEMTGSSIFDYVHKNDH 192
Query: 32 TELAEQLGLGLSQGHGLASPGS-----ANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGC 86
E+ +QLG+ +G AS G +E+ + + G P L+ SY+G
Sbjct: 193 AEVEQQLGI--KKGAEYASYGGYGDDGPTAEKPTVLKLGKDAPGGKGLLP---GESYEGD 247
Query: 87 DRSFCIRMKSTLTKRG--------------CHFKSSGY---------------------- 110
DR+FCIRMKSTLTKRG CH + G
Sbjct: 248 DRAFCIRMKSTLTKRGCHFKSSGYRVILLLCHLRKKGAGQEESHTDKQTVIGMVGIGIAL 307
Query: 111 --RSL-------DGFAFALGSDGRFLYISETV-----------SIY----------LGLS 140
SL D F F D ++ + SIY L S
Sbjct: 308 PPPSLHEIKLESDMFVFRTSLDLTIIHCENSFLDYTADELNGKSIYSLCHGQDAHKLKKS 367
Query: 141 QWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
++I KGQVLT +YR++NKN GY W+QSC T+VC +KN +Q +ICVNY+I+ E EN
Sbjct: 368 HSELIQKGQVLTPFYRILNKNAGYFWIQSCCTMVCQTKNMSDQTVICVNYIITKPEKENL 427
Query: 201 IMDCCQL 207
I+D Q+
Sbjct: 428 ILDISQI 434
>gi|344253559|gb|EGW09663.1| Neuronal PAS domain-containing protein 3 [Cricetulus griseus]
Length = 491
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 124/262 (47%), Gaps = 69/262 (26%)
Query: 15 VEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA-NPDVSS 73
VE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+A S ++ + P+
Sbjct: 41 VELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGAAEDAASSASSSSQSETPEPVE 100
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
S S ++ +RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 101 TTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPS 160
Query: 114 ------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI---- 145
F + D +Y +S Y+ L+ ++
Sbjct: 161 QIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRC 220
Query: 146 --------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NI
Sbjct: 221 YHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNI 280
Query: 186 ICVNYVISGREYENFIMDCCQL 207
I VNY++S EY++ MD QL
Sbjct: 281 IWVNYLLSNPEYKDTPMDIAQL 302
>gi|1155056|gb|AAA96754.1| trachealess [Drosophila melanogaster]
Length = 924
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 100/164 (60%), Gaps = 50/164 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 135 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 194
Query: 31 HTELAEQLGLGLSQGHG-------------------LASPGSANSEEGSGMNTGTANPDV 71
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV
Sbjct: 195 HSEIADQLGLSLTSGGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDV 253
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
++ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 254 AASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 297
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 423 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 482
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 483 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 533
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 534 SEGHSHRGR 542
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 148 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 181
>gi|195375355|ref|XP_002046467.1| GJ12482 [Drosophila virilis]
gi|194153625|gb|EDW68809.1| GJ12482 [Drosophila virilis]
Length = 992
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 99/166 (59%), Gaps = 52/166 (31%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 167 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 226
Query: 31 HTELAEQLGLGLSQGHG---------------------LASPGSANSEEGSGMNTGTANP 69
H E+A+QLGL L+ G G LASP S S++GSG + GT NP
Sbjct: 227 HAEIADQLGLSLTSGAGGGGGGGGGGGGGAGSVSGAAGLASPTSGASDDGSGTH-GTNNP 285
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
DV++ M+ +S+S YKG DRSFCIRMKSTLTKRGCHFKSSGYR+ D
Sbjct: 286 DVAASMTQASTSGYKGYDRSFCIRMKSTLTKRGCHFKSSGYRASDA 331
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 95/153 (62%), Gaps = 17/153 (11%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S +I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN
Sbjct: 450 SHTDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENEN 509
Query: 200 FIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGT 259
I+DCCQLE + +K EE ND + SP D N+ HLS D++ G
Sbjct: 510 LILDCCQLEPSVDS--IKHEEGLGNDKSSGSPGGDAAGEGNA-------HLSAGDMKLGL 560
Query: 260 S--------EGDNSGDQRGRNHLDHVTQLHNIS 284
S EG RGRN H + L++++
Sbjct: 561 SSPKTLADPEGHTQRSGRGRNASAHGSNLNSLA 593
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 180 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 213
>gi|195135202|ref|XP_002012023.1| GI16736 [Drosophila mojavensis]
gi|193918287|gb|EDW17154.1| GI16736 [Drosophila mojavensis]
Length = 985
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 73/95 (76%), Gaps = 2/95 (2%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S +I KGQVLT YYRLMNKNGGYTW+Q+CATVVCS+KNADEQNIICVNYVIS REYEN
Sbjct: 447 SHTDLIEKGQVLTGYYRLMNKNGGYTWLQTCATVVCSTKNADEQNIICVNYVISNREYEN 506
Query: 200 FIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
I+DCCQLE + +K EE ND + SP D
Sbjct: 507 LILDCCQLEPSVDS--IKHEEGLGNDKSSGSPGGD 539
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 99/171 (57%), Gaps = 49/171 (28%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 167 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 226
Query: 31 HTELAEQLGLGLSQGHGLAS------------------PGSANSEEGSGMNTGTANPDVS 72
H E+A+QLGL L+ G P S S++GSG + GT NPDV+
Sbjct: 227 HAEIADQLGLSLTSGGAGGGGSVGAGGGGGSGAAGLASPTSGASDDGSGTH-GTNNPDVA 285
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSD 123
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D + GS+
Sbjct: 286 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDATSNCSGSN 336
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 180 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 213
>gi|194746812|ref|XP_001955848.1| GF24890 [Drosophila ananassae]
gi|190623130|gb|EDV38654.1| GF24890 [Drosophila ananassae]
Length = 959
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 89/136 (65%), Gaps = 10/136 (7%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I KGQVLT YYRLMNKNGGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE
Sbjct: 447 LRKSHTDLIEKGQVLTGYYRLMNKNGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRE 506
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIE 256
EN I+DCCQLE + +K EE ND + SP D NS HLS D++
Sbjct: 507 NENLILDCCQLEPSVD--CIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMK 557
Query: 257 DGTSEGDNSG-DQRGR 271
+ + D+ G RGR
Sbjct: 558 LNSPKTDSEGHSHRGR 573
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAGDGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIAEQLGLSLTSGSGSGTGSSSSGGVGVGAGTGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAGDGRFLYISETVSIYLGLSQVEM 216
>gi|432090578|gb|ELK23994.1| Neuronal PAS domain-containing protein 1 [Myotis davidii]
Length = 350
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 130/264 (49%), Gaps = 46/264 (17%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 52 EIFEQHLGGHILQSLDGFVFALSQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 111
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P +S S T + S SS + +RSF
Sbjct: 112 SEVLEQLGLRARTSGPPTPPSIPSSSSSSSSLADTPEIEASPTEVPPSS---RAQERSFF 168
Query: 92 IRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVL 151
+RMKSTLTKRG H K+SGY+ L G A G + +S + + V++KGQV+
Sbjct: 169 VRMKSTLTKRGLHVKASGYK-LWGRGCAPGGPA----LPHPLSPAPAVGKLDVLDKGQVV 223
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
T YYR + + GG+ W+QS ATV S K+ E++++ V+YV+S E + +D QL
Sbjct: 224 TGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGHTPLDAFQLPA-- 281
Query: 212 QQRGVKREEPSNNDPENDSPDADR 235
RE+ S+ +PE P A R
Sbjct: 282 ---SAAREDASSPEPE---PAAKR 299
>gi|195435564|ref|XP_002065750.1| GK20151 [Drosophila willistoni]
gi|194161835|gb|EDW76736.1| GK20151 [Drosophila willistoni]
Length = 996
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 95/152 (62%), Gaps = 13/152 (8%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S +I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE
Sbjct: 451 LRKSHTDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRE 510
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIE 256
EN I+DCCQLE + +K EE ND + SP D + HLS D++
Sbjct: 511 NENLILDCCQLEPSVD--SIKHEEGLGNDKSSGSPSGD-------ASGEGNPHLSAGDMK 561
Query: 257 DGTSEGDNSGDQ---RGRNHLD-HVTQLHNIS 284
+ + D G RGR+ H + L+N+S
Sbjct: 562 LSSPKTDPEGHSHRGRGRSATSAHGSSLNNLS 593
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 100/166 (60%), Gaps = 52/166 (31%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 171 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 230
Query: 31 HTELAEQLGLGLSQGHG---------------------LASPGSANSEEGSGMNTGTANP 69
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NP
Sbjct: 231 HSEIAEQLGLSLTSGTGGGGVAGGGGGGGGSSGSGAAGMASPTSGASDDGSGTH-GTNNP 289
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
DV++ M+ +S++ YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 290 DVAASMTQASTAGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRANDA 335
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 184 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 217
>gi|195490113|ref|XP_002093007.1| GE21022 [Drosophila yakuba]
gi|194179108|gb|EDW92719.1| GE21022 [Drosophila yakuba]
Length = 958
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 95/153 (62%), Gaps = 19/153 (12%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 NSGDQ---RGRN-------HLDHVTQLHNISTP 286
+ G RGRN L+ +T + + TP
Sbjct: 568 SEGHSHRGRGRNAAASHGSSLNSLTMIKDSPTP 600
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIAEQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|195012446|ref|XP_001983647.1| GH15456 [Drosophila grimshawi]
gi|193897129|gb|EDV95995.1| GH15456 [Drosophila grimshawi]
Length = 1029
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 455 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENLILD 514
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE + +K EE ND + SP +D S HL+ D++ G S
Sbjct: 515 CCQLEPSVD--SIKHEEGLGNDKSSGSPGSDATGPEGSA------HLN-SDMKLGLSSPK 565
Query: 264 NSGD---QRGR 271
GD QRGR
Sbjct: 566 TDGDTHSQRGR 576
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 97/164 (59%), Gaps = 50/164 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 167 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 226
Query: 31 HTELAEQLGLGLSQGHGLAS-------------------PGSANSEEGSGMNTGTANPDV 71
H+E+AEQLGL L+ G G P S S++GSG + GT NPDV
Sbjct: 227 HSEIAEQLGLSLTSGSGGGGGVGGGGSGGSGSGAAGLASPTSGASDDGSGTH-GTNNPDV 285
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
++ M+ +S+S YKG DRSFCIRMKSTLTKRGCHFKSSGYR+ D
Sbjct: 286 AASMTQASTSGYKGYDRSFCIRMKSTLTKRGCHFKSSGYRASDA 329
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 180 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 213
>gi|194864604|ref|XP_001971021.1| GG14662 [Drosophila erecta]
gi|190652804|gb|EDV50047.1| GG14662 [Drosophila erecta]
Length = 961
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 94/153 (61%), Gaps = 19/153 (12%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 NSG-DQRGRNH---------LDHVTQLHNISTP 286
+ G RGR L+ +T + + TP
Sbjct: 568 SEGHSHRGRGRSAAATHGSSLNSLTMIKDSPTP 600
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIAEQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|442629204|ref|NP_001261208.1| trachealess, isoform E [Drosophila melanogaster]
gi|440215072|gb|AGB93903.1| trachealess, isoform E [Drosophila melanogaster]
Length = 952
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 451 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 510
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 511 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 561
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 562 SEGHSHRGR 570
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 95/163 (58%), Gaps = 55/163 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + V+
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-------VA 282
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 283 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 325
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|24654763|ref|NP_523872.2| trachealess, isoform A [Drosophila melanogaster]
gi|7291970|gb|AAF47386.1| trachealess, isoform A [Drosophila melanogaster]
Length = 958
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 568 SEGHSHRGR 576
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|442629206|ref|NP_001261209.1| trachealess, isoform F [Drosophila melanogaster]
gi|440215073|gb|AGB93904.1| trachealess, isoform F [Drosophila melanogaster]
Length = 989
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 488 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 547
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 548 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 598
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 599 SEGHSHRGR 607
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 95/163 (58%), Gaps = 55/163 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 207 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 266
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + V+
Sbjct: 267 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-------VA 319
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 320 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 362
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 220 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 253
>gi|1173581|gb|AAA96257.1| bHLH-PAS protein [Drosophila melanogaster]
Length = 949
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 448 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 507
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 508 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 558
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 559 SEGHSHRGR 567
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 161 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 220
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 221 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 279
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 280 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 322
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 174 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 207
>gi|442629202|ref|NP_001261207.1| trachealess, isoform D [Drosophila melanogaster]
gi|391358202|sp|Q24119.4|TRH_DROME RecName: Full=Protein trachealess
gi|440215071|gb|AGB93902.1| trachealess, isoform D [Drosophila melanogaster]
Length = 1022
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 568 SEGHSHRGR 576
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|195336324|ref|XP_002034791.1| trachealess [Drosophila sechellia]
gi|194127884|gb|EDW49927.1| trachealess [Drosophila sechellia]
Length = 876
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 100/161 (62%), Gaps = 47/161 (29%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG----------------LASPGSANSEEGSGMNTGTANPDVSSL 74
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NPDV++
Sbjct: 230 HSEIAEQLGLSLTSGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVAAS 288
Query: 75 MSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 MTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 329
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 89/146 (60%), Gaps = 5/146 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 455 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 514
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS S L+ P + T
Sbjct: 515 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNSHLSAGDMKLNSPKTDSETHSHR 572
Query: 264 NSGDQRGRNH---LDHVTQLHNISTP 286
G +H L+ +T + + TP
Sbjct: 573 GRGRSAAASHGSSLNSLTMIKDSPTP 598
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|195583266|ref|XP_002081444.1| GD25707 [Drosophila simulans]
gi|194193453|gb|EDX07029.1| GD25707 [Drosophila simulans]
Length = 958
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 94/153 (61%), Gaps = 19/153 (12%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 N-SGDQRGRNH---------LDHVTQLHNISTP 286
+ S RGR L+ +T + + TP
Sbjct: 568 SESHSHRGRGRSAAASHGSSLNSLTMIKDSPTP 600
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+AEQLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIAEQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>gi|410910006|ref|XP_003968481.1| PREDICTED: neuronal PAS domain-containing protein 3-like [Takifugu
rubripes]
Length = 764
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 134/322 (41%), Gaps = 113/322 (35%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
++FEQH G H+LQ VE+TGSSVFDYIH ADH
Sbjct: 122 DMFEQHLGAHLLQSLDGFVFVVSHEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADH 181
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEE------GSGMNTGTANPDVSSLMSLSSSSSYKG 85
E+AE+LG+ + H A G + E + +GT P S S S+
Sbjct: 182 VEMAERLGI---RPHLRAEAGCHTAPESASSSASTSSLSGTPEPAAPS----SPHSTTDD 234
Query: 86 C-DRSFCIRMKSTLTKRGCHFKSSGYRSL------------------------------- 113
C DR F IRMKSTLTKRG H KSSGY+ +
Sbjct: 235 CPDRGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSTRSVRRPMGLVVLAH 294
Query: 114 --------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI-------------- 145
F F + D + +Y +S Y+ L+ +VI
Sbjct: 295 TLPPSTLNEVRMESHMFVFRVNMDLQVIYCENRISEYMDLTPAEVIGHTCYHFIHVEDLE 354
Query: 146 ----------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
KGQV+T YYR + + GGY W+QS ATV + K E+N+I VNYV+S
Sbjct: 355 NLRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSTATVSINHKAPHERNVIWVNYVLSRN 414
Query: 196 EYENFIMDCCQLEDYIQQRGVK 217
E + +D QL + I+ ++
Sbjct: 415 EMADTPLDLLQLPESIRAERLR 436
>gi|432892207|ref|XP_004075706.1| PREDICTED: neuronal PAS domain-containing protein 1-like [Oryzias
latipes]
Length = 820
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 145/356 (40%), Gaps = 113/356 (31%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
++FEQH G H+LQ VE+TGSSVFDYIH ADH
Sbjct: 130 DMFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADH 189
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEE------GSGMNTGTANPDVSSLMSLSSSSSYKG 85
E+AE+LG+ + H A G + E + GT P SS SS+
Sbjct: 190 VEMAERLGI---RPHLRAEAGCHTAPESASSSASTSSLAGTPEPAPSS----PHSSADDP 242
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------------------- 113
+R F IRMKSTLTKRG H KSSGY+ +
Sbjct: 243 PERGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSAHSVRRPMGLVALAHT 302
Query: 114 -------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI--------------- 145
F F + D + Y +S Y+ L+ +V+
Sbjct: 303 LPPSTLNEVRMESHMFVFRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFIHVEDLEN 362
Query: 146 ---------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
KGQV+T YYR + + GGY W+QS ATV + K E+N+I VNYV+S E
Sbjct: 363 FRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSTATVSINHKAPHERNVIWVNYVLSRTE 422
Query: 197 YENFIMDCCQLEDYIQ-QRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLS 251
+ +D QL + I+ +R P+++ P+ + S D++ + S
Sbjct: 423 LPDTPVDLLQLPESIRAERLQVSPSPTDSSPQARGAKPAKSSVGKSSDTKGREKFS 478
>gi|47225041|emb|CAF97456.1| unnamed protein product [Tetraodon nigroviridis]
Length = 800
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 123/278 (44%), Gaps = 82/278 (29%)
Query: 15 VEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------GSGMNTGTAN 68
VE+TGSSVFDYIH ADH E+AE+LG+ + H A G + E + +GT
Sbjct: 163 VELTGSSVFDYIHPADHVEMAERLGI---RPHLRAEAGCHTAPESASSSASTSSLSGTPE 219
Query: 69 PDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL--------------- 113
P SS S++ DR F IRMKSTLTKRG H KSSGY+ +
Sbjct: 220 PAPSSPHSITDEPP----DRGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPG 275
Query: 114 ------------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQ 143
F F + D + +Y +S Y+ L+ +
Sbjct: 276 STRSVRRPMGLVALAHTLPPSTLNEVRMESHMFVFRVNMDLQVIYCENRISEYMDLTPAE 335
Query: 144 VI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKN 179
V+ KGQV+T YYR + + GGY W+QS ATV + K
Sbjct: 336 VVGHTCYHFIHVEDLENLRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSTATVSINHKA 395
Query: 180 ADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVK 217
E+N+I VNYV+S E + +D QL + I+ ++
Sbjct: 396 PHERNVIWVNYVLSRNEMADTPLDLLQLPESIRAERLR 433
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
H + +SLDGF F + +GRFLYISETVSIYLGLSQ I K
Sbjct: 88 HLGAHLLQSLDGFVFVVSHEGRFLYISETVSIYLGLSQSPSIRK 131
>gi|198467103|ref|XP_001354251.2| GA19928 [Drosophila pseudoobscura pseudoobscura]
gi|198149510|gb|EAL31304.2| GA19928 [Drosophila pseudoobscura pseudoobscura]
Length = 982
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 70/88 (79%), Gaps = 2/88 (2%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 456 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENLILD 515
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSP 231
CCQLE + +K EE ND + SP
Sbjct: 516 CCQLEPSMD--SIKNEEGLGNDKSSGSP 541
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 97/167 (58%), Gaps = 53/167 (31%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 162 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 221
Query: 31 HTELAEQLGLGLSQGHGLAS----------------------PGSANSEEGSGMNTGTAN 68
H+E+A+QLGL L+ G G P S S++GSG + GT N
Sbjct: 222 HSEIADQLGLSLTSGGGGGGGGGGGGSSGSGGGGSGAAGLASPTSGASDDGSGTH-GTNN 280
Query: 69 PDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
PDV++ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 281 PDVAASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 327
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 175 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 208
>gi|326674072|ref|XP_687851.4| PREDICTED: neuronal PAS domain-containing protein 3 [Danio rerio]
Length = 843
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 144/354 (40%), Gaps = 116/354 (32%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
++FEQH G H+LQ VE+TGSSVFDYIH ADH
Sbjct: 195 DIFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADH 254
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMN------TGTANPDVSSLMSLSSSSSYKG 85
E+AE+LG+ + H A G S E + + GT P S S +
Sbjct: 255 VEMAERLGI---RPHLRAEAGCQTSHESASSSASTSSLAGTPEPAPHS----PCSPVREL 307
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------------------- 113
+R F IRMKSTLTKRG H KSSGY+ +
Sbjct: 308 SERGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPSSSRALHRPMGLVALAHT 367
Query: 114 -------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI--------------- 145
F F + D + Y +S Y+ LS +V+
Sbjct: 368 LPPSTLNEVRMESHMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHAEDLDT 427
Query: 146 ---------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
KGQV+T YYR + + GGY W+QSCATV + K E+N+I VNYV+S E
Sbjct: 428 VRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSCATVSINHKAPHERNVIWVNYVLSRPE 487
Query: 197 YENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHL 250
+ +D QL + ++ ++ +++ P + SP G SR+ L
Sbjct: 488 LADMPLDLLQLPESLRAERLQ----ASSSPRDMSPKTQGSTGTQPLKSRSETDL 537
>gi|195167721|ref|XP_002024681.1| GL22602 [Drosophila persimilis]
gi|194108086|gb|EDW30129.1| GL22602 [Drosophila persimilis]
Length = 1106
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 70/88 (79%), Gaps = 2/88 (2%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 675 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENLILD 734
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSP 231
CCQLE + +K EE ND + SP
Sbjct: 735 CCQLEPSMDS--IKNEEGLGNDKSSGSP 760
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 97/169 (57%), Gaps = 55/169 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 379 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 438
Query: 31 HTELAEQLGLGLSQGHGLAS------------------------PGSANSEEGSGMNTGT 66
H+E+A+QLGL L+ G G P S S++GSG + GT
Sbjct: 439 HSEIADQLGLSLTSGGGGGGGGGGGGGGSSGSGGGGSGAAGLASPTSGASDDGSGTH-GT 497
Query: 67 ANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
NPDV++ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 498 NNPDVAASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 546
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 392 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 425
>gi|344269377|ref|XP_003406529.1| PREDICTED: neuronal PAS domain-containing protein 1-like [Loxodonta
africana]
Length = 571
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 41/255 (16%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-GLSQGHGLASPGSANSEEGSGMNTGTANPDVS 72
QVE+TGSSVFDYIH DH+E+ EQLGL + G S++S S ++ P++
Sbjct: 168 QVELTGSSVFDYIHPGDHSEVLEQLGLQAPTPGPPTPPSISSSSSSSSSSSSLVETPEIE 227
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL--------------DGFAF 118
+ ++ S++ +RSF IRMKSTLTKRG H K+SGY+ G
Sbjct: 228 ASLAQVPPSAWV-QERSFFIRMKSTLTKRGLHVKASGYKPWQQKSRRDRVREEGSKGGES 286
Query: 119 ALGSDGRFLYISETVSI----YLGLSQWQ----------------VINKGQVLTHYYRLM 158
G L +S+ + + +G S +Q +++KGQV+T YYR +
Sbjct: 287 RQGLGAEPLRVSDHMDLGPSELVGRSCYQFVHGQDAARIRQSHLDLLDKGQVMTGYYRWL 346
Query: 159 NKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKR 218
+ GG+ W+QS ATV S K+ E++++ V+YV+S E + +D QL V R
Sbjct: 347 QRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQTEGDQTPLDTFQLPAR-----VAR 401
Query: 219 EEPSNNDPENDSPDA 233
E+PS+ +PE PD+
Sbjct: 402 EDPSSPEPEPIEPDS 416
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 110 YRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+ SLDGF FAL +G+FLYISETVSIYLGLSQ
Sbjct: 137 FESLDGFVFALNQEGKFLYISETVSIYLGLSQ 168
>gi|348526754|ref|XP_003450884.1| PREDICTED: neuronal PAS domain-containing protein 1-like
[Oreochromis niloticus]
Length = 811
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 130/321 (40%), Gaps = 111/321 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
++FEQH G H+LQ VE+TGSSVFDYIH ADH
Sbjct: 119 DMFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPADH 178
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEE------GSGMNTGTANPDVSSLMSLSSSSSYKG 85
E+AE+LG+ + H A G + E + GT P S S +
Sbjct: 179 VEMAERLGI---RPHLRAEAGCHTAPESASSSASTSSLAGTPEPAAP---SSPHSPADDP 232
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------------------- 113
+R F IRMKSTLTKRG H KSSGY+ +
Sbjct: 233 PERGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSTRSVRRPMGLVALAHT 292
Query: 114 -------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI--------------- 145
F F + D + Y +S Y+ L+ +V+
Sbjct: 293 LPPSTLNEVRMESHMFVFRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFIHVEDLEN 352
Query: 146 ---------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
KGQV+T YYR + + GGY W+QS ATV + K E+N+I VNYV+S E
Sbjct: 353 LRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSTATVSINHKAPHERNVIWVNYVLSRTE 412
Query: 197 YENFIMDCCQLEDYIQQRGVK 217
+ +D QL + I+ ++
Sbjct: 413 LPDTPLDLLQLPESIRAERLR 433
>gi|321461465|gb|EFX72497.1| hypothetical protein DAPPUDRAFT_59022 [Daphnia pulex]
Length = 406
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 84/140 (60%), Gaps = 31/140 (22%)
Query: 3 LFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHT 32
LF+QHQGTHILQ VEMTGSSVFDY+H ADH
Sbjct: 86 LFDQHQGTHILQSLDGFAFSLGSDGRFLYISETVSIYLGLSQVEMTGSSVFDYVHTADHA 145
Query: 33 ELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN-PDVSSLMSLSSSSSYKGCDRSFC 91
ELA+QLGL L+ S S+ + + A+ ++SLMSL S+S+Y+G DRSFC
Sbjct: 146 ELAQQLGLTLATNQTHQSASSSATSSSQQLPPSPASGTGMTSLMSLESNSAYQGLDRSFC 205
Query: 92 IRMKSTLTKRGCHFKSSGYR 111
IRMKSTLTKRGCHFKSSGYR
Sbjct: 206 IRMKSTLTKRGCHFKSSGYR 225
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 58/65 (89%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQV+T YYR++N++GG+TW+QSCATVVC+SKN DEQ+I+CVNYV+S E +N ++D
Sbjct: 340 LMHKGQVMTPYYRILNRHGGFTWIQSCATVVCNSKNGDEQSIVCVNYVLSRTEMKNLVVD 399
Query: 204 CCQLE 208
CQLE
Sbjct: 400 QCQLE 404
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 33/34 (97%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFAF+LGSDGRFLYISETVSIYLGLSQ ++
Sbjct: 97 QSLDGFAFSLGSDGRFLYISETVSIYLGLSQVEM 130
>gi|351697945|gb|EHB00864.1| Neuronal PAS domain-containing protein 1 [Heterocephalus glaber]
Length = 552
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 149/359 (41%), Gaps = 90/359 (25%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 130 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 189
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
TE+ EQLGL ++ G +P S +S S ++ P++ + + S + +RSF
Sbjct: 190 TEVLEQLGL-RARTPGPPTPPSVSSSSSSSSSSQADIPEIDA-SPAEAPPSARVQERSFF 247
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 VRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVFR 307
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 308 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVMTGYY 367
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL G
Sbjct: 368 RWLQRTGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSHAEGGQTPLDTFQLPASAACEG 427
Query: 216 VKR--EEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGDNSGDQRGRN 272
EP+ P + A D ++ +R P + S D+ G++ R
Sbjct: 428 ASSSGPEPTERGPPAEGKQAAPPDQDDAPQARGKCIKVEPRAREARSSEDSEGEEAARQ 486
>gi|355761851|gb|EHH61859.1| hypothetical protein EGM_19993, partial [Macaca fascicularis]
Length = 534
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 137/331 (41%), Gaps = 95/331 (28%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL G S G + P+ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLXXXXXXXXXXGGLCVSSSGPHNLPSLSVPE-ASLTKVPPSSLVQ--ERSFF 248
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 249 VRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFR 308
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 309 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYY 368
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 369 RWLRRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPA-----S 423
Query: 216 VKREEPSNNDPENDSPDADREDGRNSGDSRN 246
V EE S+ PE + E G+ + + N
Sbjct: 424 VACEEASSPGPEPTELEPPTE-GKQAAPAEN 453
>gi|348557869|ref|XP_003464741.1| PREDICTED: neuronal PAS domain-containing protein 1 [Cavia
porcellus]
Length = 539
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 137/300 (45%), Gaps = 63/300 (21%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 128 EIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 187
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P ++S S T+ D S + + +RSF
Sbjct: 188 SEVLEQLGLRAPTSGPPTPPSVSSSSSSSSSLADTSEIDASPAEAPPFAQVQ---ERSFF 244
Query: 92 IRMKSTLTKRGCHFKSSGYRS-------------LDGFAFALGSDGRFLYISETVSIYLG 138
+RMKSTLTKRG H K+SGY++ +D L + ++ + +
Sbjct: 245 VRMKSTLTKRGLHVKASGYKAPPLSPVTSRVSDHMDLGPSELVGRSCYQFVHGQDATRIR 304
Query: 139 LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
S +++KGQV+T YYR + + GG+ W+QS ATV S K+ E +++ V++V+S E
Sbjct: 305 QSHLDLLDKGQVMTGYYRWLQRTGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSHAEGS 364
Query: 199 NFIMDCCQLEDYIQQRGVKREEPSNNDPEN-DSPDADREDGRNSGDSRNHDHLSPPDIED 257
+D QL P++ E+ SP ++ DG G +PPD +D
Sbjct: 365 QTPLDTFQL-------------PASTICEDVSSPGSEPTDG---GPPAEGKQAAPPDQDD 408
>gi|426389352|ref|XP_004061087.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|426389354|ref|XP_004061088.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 590
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 142/332 (42%), Gaps = 97/332 (29%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQR 214
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPA----- 422
Query: 215 GVKREEPSNNDPENDSPDADREDGRNSGDSRN 246
V EE S+ PE P++ E G+ + + N
Sbjct: 423 SVACEEASSPGPEPTEPESPTE-GKQAAPAEN 453
>gi|444730780|gb|ELW71154.1| Neuronal PAS domain-containing protein 1 [Tupaia chinensis]
Length = 646
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 131/296 (44%), Gaps = 89/296 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 185 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 244
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL ++ HG +P S +S S ++ P+ + S +++ + +RSF
Sbjct: 245 SEVLEQLGL-RARTHGPPTPPSVSSSSSSSSSSLADTPEAEA--SPTAAPPSRVQERSFF 301
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
IRMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 302 IRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVFR 361
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 362 LSLGLTILACESRVSEHMDLGPSELVGRSCYQFVHAQDATSIRQSHLDLLDKGQVMTGYY 421
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 422 RWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 477
>gi|6679100|ref|NP_032744.1| neuronal PAS domain-containing protein 1 [Mus musculus]
gi|3914159|sp|P97459.1|NPAS1_MOUSE RecName: Full=Neuronal PAS domain-containing protein 1;
Short=Neuronal PAS1
gi|1840054|gb|AAB47247.1| neuronal PAS1 [Mus musculus]
gi|124298116|gb|AAI32114.1| Neuronal PAS domain protein 1 [Mus musculus]
gi|148710145|gb|EDL42091.1| neuronal PAS domain protein 1 [Mus musculus]
gi|187953721|gb|AAI37864.1| Neuronal PAS domain protein 1 [Mus musculus]
Length = 594
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 135/308 (43%), Gaps = 93/308 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL + G +P S +S S ++ P++ + +S +++ +RSF
Sbjct: 192 SEVLEQLGL-RAASIGPPTPPSVSSSSSSSSSSLVDTPEIEA-SPTEASPAFRAQERSFF 249
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG + K+SGY+ L A L + G L + + L
Sbjct: 250 VRMKSTLTKRGLNVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVFR 309
Query: 138 --------------------------GLSQWQVIN----------------KGQVLTHYY 155
G S +Q ++ KGQV+T YY
Sbjct: 310 LSLGLTILACESRVSDHMDMGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVVTGYY 369
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV + K+ E +++ V++V+S E +D QL + Q
Sbjct: 370 RWLQRAGGFVWLQSVATVAGNGKSTGEHHVLWVSHVLSNAEGSQTPLDAFQLPAIVSQ-- 427
Query: 216 VKREEPSN 223
EEPS
Sbjct: 428 ---EEPSR 432
>gi|118404610|ref|NP_001072647.1| neuronal PAS domain protein 3 [Xenopus (Silurana) tropicalis]
gi|115312943|gb|AAI23930.1| neuronal PAS domain protein 3 [Xenopus (Silurana) tropicalis]
Length = 899
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 130/307 (42%), Gaps = 101/307 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
M++FE H G+HILQ VE+TGSS+FDY+H D
Sbjct: 113 MDIFESHMGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSMFDYVHPGD 172
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSE--EGSGMNTGTANPDVSSLMSLSSSSSYKGCDR 88
H E+AEQLG+ L G GL S SAN + + ++ + P+ S +R
Sbjct: 173 HVEMAEQLGMKLPPGRGLLS-QSANDDGASSASSSSQSETPEPVEATSPGILPQDNSLER 231
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSL----------------------------------- 113
SF IRMKSTLTKRG H KSSGY+ +
Sbjct: 232 SFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRLRVSLSHGRSGAGQVMGLVVVAHALPPP 291
Query: 114 ---------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINKG----------QVLTH- 153
F + D +Y +S Y+ L+ ++ K + + H
Sbjct: 292 TINEVRIDCHMFVTRVNLDLNIIYCENRISDYMDLNAVDLMGKRCYHFIHAEDVEGIRHS 351
Query: 154 YYRLMNK----NGGYTW---------VQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
+ L+NK Y W VQSCAT+ ++KNA E+NII VNY++S +EY++
Sbjct: 352 HLDLLNKGQCVTKYYRWMQKNGGYIWVQSCATISINAKNATERNIIWVNYILSLQEYKDI 411
Query: 201 IMDCCQL 207
MD QL
Sbjct: 412 PMDIAQL 418
>gi|242000224|ref|XP_002434755.1| neuronal pas domain protein, putative [Ixodes scapularis]
gi|215498085|gb|EEC07579.1| neuronal pas domain protein, putative [Ixodes scapularis]
Length = 283
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 121/239 (50%), Gaps = 42/239 (17%)
Query: 1 MELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGS 60
+++FEQHQGTHILQV V H + Q G+ +
Sbjct: 29 VDIFEQHQGTHILQV------VLVLCHLRPQYSFSPGRSKQPPQILGMVA---------- 72
Query: 61 GMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFAL 120
M P V+ + CD F +R+ T R H + LD L
Sbjct: 73 -MAIALPPPSVNEV--------RLECDM-FVMRL--TFDFRIAHCEPRISELLDYTPEDL 120
Query: 121 GSDGRFLYISETVSIYLGLSQWQV--INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
GR +Y L + V +NKGQV++ YYRL+NKNGG+TW+Q+CATV+C++K
Sbjct: 121 --TGRNMYTLCHGQDIQKLRKCHVDLMNKGQVMSGYYRLINKNGGFTWMQTCATVICNNK 178
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGV---KREEPSNNDPENDSPDAD 234
N++EQ+IICVNYV+SG EYEN +MDC QL RGV K ++PSN++ +PD +
Sbjct: 179 NSEEQSIICVNYVLSGIEYENCVMDCSQL------RGVGDIKPDDPSNSE-RGSTPDTE 230
>gi|148704809|gb|EDL36756.1| neuronal PAS domain protein 3 [Mus musculus]
Length = 703
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 109/243 (44%), Gaps = 69/243 (28%)
Query: 34 LAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCI 92
+AEQLG+ L G GL S G+ ++ + ++ + P+ S S ++ +RSF I
Sbjct: 1 MAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERSFFI 60
Query: 93 RMKSTLTKRGCHFKSSGYRSL--------------------------------------- 113
RMKSTLTKRG H KSSGY+ +
Sbjct: 61 RMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINE 120
Query: 114 -----DGFAFALGSDGRFLYISETVSIYLGLSQWQVI----------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 121 VRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDL 180
Query: 146 -NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++ MD
Sbjct: 181 LNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDI 240
Query: 205 CQL 207
QL
Sbjct: 241 AQL 243
>gi|157819069|ref|NP_001100949.1| neuronal PAS domain-containing protein 1 [Rattus norvegicus]
gi|149056888|gb|EDM08319.1| neuronal PAS domain protein 1 (predicted) [Rattus norvegicus]
Length = 595
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 141/323 (43%), Gaps = 94/323 (29%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL + P +++ S ++ P++ + +S +++ +RSF
Sbjct: 192 SEVLEQLGLRAATTGPPTPPSVSSTSSSSSSSSLVDTPEIEA-SPTEASPAFRVQERSFF 250
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG + K+SGY+ L A L + G L + + L
Sbjct: 251 VRMKSTLTKRGLNVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVFR 310
Query: 138 --------------------------GLSQWQVIN----------------KGQVLTHYY 155
G S +Q ++ KGQV+T YY
Sbjct: 311 LSLGLTILACESRVSDHMDMGPSELVGRSCYQFVHGQDVTRIRQSHLDLLDKGQVVTGYY 370
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV + K+A E +++ V++V+S E +D QL + Q
Sbjct: 371 RWLQRAGGFVWLQSVATVAGNGKSAGEHHVLWVSHVLSHAEGGQTPLDAFQLPAIVSQ-- 428
Query: 216 VKREEPSNNDPE--NDSPDADRE 236
EE S+ PE + P +R+
Sbjct: 429 ---EESSSPGPEPTKEEPPVERK 448
>gi|395854216|ref|XP_003799594.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 1
[Otolemur garnettii]
gi|395854218|ref|XP_003799595.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 2
[Otolemur garnettii]
Length = 591
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 139/331 (41%), Gaps = 95/331 (28%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P ++S S + P++ + + + SS +RSF
Sbjct: 192 SEVLEQLGLRAPAPGPPTPPSVSSSSSSSSLAD---TPEIEASPTKAPPSSLV-QERSFF 247
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
IRMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 IRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFR 307
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 308 LSLGLTILACESRVSDHMDLGPAELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVMTGYY 367
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 RWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASMAH-- 425
Query: 216 VKREEPSNNDPENDSPDADREDGRNSGDSRN 246
E+ S+ PE P+ E + + ++N
Sbjct: 426 ---EDESSPVPEPTKPEPPAEGKQAAPLAKN 453
>gi|296234201|ref|XP_002807896.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 1-like [Callithrix jacchus]
Length = 592
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 127/293 (43%), Gaps = 89/293 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S ++ P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRAPTPGPPTPPSVSSSSSSSSSSSLADTPEIETSLTKVPPSSLVR--ERSF 249
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 250 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 309
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 310 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 369
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 370 YRWLQRTGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL 422
>gi|238625263|gb|ACR47966.1| trachealess [Artemia sinica]
Length = 772
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 33/140 (23%)
Query: 4 FEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHTE 33
EQ QGTHILQ VE+TGSSVFDYIH ADH E
Sbjct: 146 IEQFQGTHILQSLDGFAFSLGHDGRFLYISETVSIYLGLSQVELTGSSVFDYIHTADHQE 205
Query: 34 LAEQLGLGLSQGHGLAS--PGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
LA+QLG+ L+ + ++S P S S G+G + G+ + +S+ MS+S + YKG DR+FC
Sbjct: 206 LADQLGINLNLSNSISSNLPPSPASGSGNGDDLGSESTGMSN-MSISKDADYKGFDRAFC 264
Query: 92 IRMKSTLTKRGCHFKSSGYR 111
+RMKSTLTKRGCH KSSGYR
Sbjct: 265 LRMKSTLTKRGCHMKSSGYR 284
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+INKGQ ++ R++N++GG++WVQ CATVVCSSKN++EQ+I+CV YV+S +Y F MD
Sbjct: 387 LINKGQAMSGCLRMLNRHGGFSWVQLCATVVCSSKNSEEQSIVCVTYVLSRADYGGFPMD 446
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
QLE I+ +K E P + E +P A+
Sbjct: 447 TSQLETDIKATDIKVETPIS---ETSAPTAE 474
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFAF+LG DGRFLYISETVSIYLGLSQ ++
Sbjct: 156 QSLDGFAFSLGHDGRFLYISETVSIYLGLSQVEL 189
>gi|109125286|ref|XP_001112801.1| PREDICTED: neuronal PAS domain-containing protein 1-like isoform 3
[Macaca mulatta]
Length = 591
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 137/331 (41%), Gaps = 94/331 (28%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P ++S S + +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSSLADTPEIEASLTKVPPSSLVQ--ERSFF 249
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 250 VRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFR 309
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 310 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYY 369
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 370 RWLRRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPA-----S 424
Query: 216 VKREEPSNNDPENDSPDADREDGRNSGDSRN 246
V EE S+ PE + E G+ + + N
Sbjct: 425 VACEEASSPGPEPTELEPPTE-GKQAAPAEN 454
>gi|402906063|ref|XP_003915826.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 1
[Papio anubis]
gi|402906065|ref|XP_003915827.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 2
[Papio anubis]
Length = 590
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 140/332 (42%), Gaps = 97/332 (29%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLAQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQR 214
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPA----- 422
Query: 215 GVKREEPSNNDPENDSPDADREDGRNSGDSRN 246
V EE S+ PE + E G+ + + N
Sbjct: 423 SVACEEASSPGPEPTELEPPTE-GKQAAPAEN 453
>gi|351705334|gb|EHB08253.1| Neuronal PAS domain-containing protein 3 [Heterocephalus glaber]
Length = 818
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 1 MELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGS 60
+E+FE H G+HILQVE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+A E+G+
Sbjct: 41 IEVFEAHLGSHILQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTA--EDGA 98
Query: 61 GMNTGTA---NPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFA 117
+ ++ P+ S S ++ +RSF IRMKSTLTKRG H KSSGY+
Sbjct: 99 SSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVRLKLP 158
Query: 118 FALGSDGRF 126
+ + RF
Sbjct: 159 SRMEAGSRF 167
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S ++NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 281 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 340
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 341 TPMDIAQL 348
>gi|26892114|gb|AAN84555.1| trachealess [Artemia franciscana]
Length = 494
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 84/142 (59%), Gaps = 33/142 (23%)
Query: 4 FEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADHTE 33
EQ QGTHILQ VE+TGSSVFDYIH ADH E
Sbjct: 98 IEQFQGTHILQSLDGFAFSLGHDGRFLYISETVSIYLGLSQVELTGSSVFDYIHTADHQE 157
Query: 34 LAEQLGLGLSQGHGLAS--PGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
LA+QLG+ L+ + +S P S S G+G + G+ + +S+ MS+S + YKG DR+FC
Sbjct: 158 LADQLGINLNLSNSTSSNFPPSPASGSGNGDDLGSESTGMSN-MSISKDADYKGFDRAFC 216
Query: 92 IRMKSTLTKRGCHFKSSGYRSL 113
+RMKSTLTKRGCH KSSGYR +
Sbjct: 217 LRMKSTLTKRGCHMKSSGYRVI 238
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+INKGQ ++ R++N++GG++WVQ CATVVCSSKN++EQ+I+CV YV+S +Y F MD
Sbjct: 339 LINKGQAMSGCLRMLNRHGGFSWVQLCATVVCSSKNSEEQSIVCVTYVLSRPDYGGFPMD 398
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
QLE I+ +K E P + E +P A+
Sbjct: 399 TSQLETDIKATDIKVETPIS---ETSAPTAE 426
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFAF+LG DGRFLYISETVSIYLGLSQ ++
Sbjct: 108 QSLDGFAFSLGHDGRFLYISETVSIYLGLSQVEL 141
>gi|332257214|ref|XP_003277706.1| PREDICTED: neuronal PAS domain-containing protein 1 [Nomascus
leucogenys]
Length = 587
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 127/293 (43%), Gaps = 91/293 (31%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL +S SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVSPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVIN----------------KGQVLTHY 154
G S +Q ++ KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL 420
>gi|355703698|gb|EHH30189.1| hypothetical protein EGK_10805 [Macaca mulatta]
Length = 627
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 142/348 (40%), Gaps = 116/348 (33%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 164 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 223
Query: 32 TELAEQLGL----------------GLSQGHGLA-SPGSANSEEGSGMNTGTANPDVSSL 74
+E+ EQLGL S LA +P NS+ M + + +SL
Sbjct: 224 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSSLADTPEIGNSKGSQIMKS-----EEASL 278
Query: 75 MSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLY 128
+ SS + +RSF +RMKSTLTKRG H K+SGY+ L A L + G L
Sbjct: 279 TKVPPSSLVQ--ERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLP 336
Query: 129 ISETVSIYL----------------------------------GLSQWQVI--------- 145
+ + L G S +Q +
Sbjct: 337 PAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIR 396
Query: 146 -------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
+KGQV+T YYR + + GG+ W+QS ATV S K+ E +++ V++V+S E
Sbjct: 397 QSHVDLLDKGQVMTGYYRWLRRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGG 456
Query: 199 NFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRN 246
+D QL V EE S+ PE + E G+ + + N
Sbjct: 457 QTPLDAFQLPA-----SVACEEASSPGPEPTELEPPTE-GKQAAPAEN 498
>gi|22027482|ref|NP_002508.2| neuronal PAS domain-containing protein 1 [Homo sapiens]
gi|59803108|sp|Q99742.2|NPAS1_HUMAN RecName: Full=Neuronal PAS domain-containing protein 1;
Short=Neuronal PAS1; AltName:
Full=Basic-helix-loop-helix-PAS protein MOP5; AltName:
Full=Class E basic helix-loop-helix protein 11;
Short=bHLHe11; AltName: Full=Member of PAS protein 5;
AltName: Full=PAS domain-containing protein 5
gi|12313662|dbj|BAB21098.1| neuronal PAS domain protein 1 (NPAS1) [Homo sapiens]
gi|24660361|gb|AAH39016.1| NPAS1 protein [Homo sapiens]
gi|119577858|gb|EAW57454.1| neuronal PAS domain protein 1 [Homo sapiens]
Length = 590
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 91/297 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 424
>gi|332856339|ref|XP_001168597.2| PREDICTED: neuronal PAS domain-containing protein 1 isoform 1 [Pan
troglodytes]
gi|332856341|ref|XP_001168613.2| PREDICTED: neuronal PAS domain-containing protein 1 isoform 2 [Pan
troglodytes]
gi|410215168|gb|JAA04803.1| neuronal PAS domain protein 1 [Pan troglodytes]
gi|410254662|gb|JAA15298.1| neuronal PAS domain protein 1 [Pan troglodytes]
gi|410301982|gb|JAA29591.1| neuronal PAS domain protein 1 [Pan troglodytes]
Length = 590
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 91/297 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 424
>gi|397493270|ref|XP_003817533.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 1 [Pan paniscus]
Length = 590
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 91/297 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 424
>gi|1840056|gb|AAB47248.1| neuronal PAS1 [Homo sapiens]
Length = 590
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 127/297 (42%), Gaps = 91/297 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL + ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTTTPGPPTPSSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 424
>gi|297705266|ref|XP_002829499.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 1
[Pongo abelii]
gi|395751430|ref|XP_003779257.1| PREDICTED: neuronal PAS domain-containing protein 1 isoform 2
[Pongo abelii]
Length = 590
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 126/293 (43%), Gaps = 91/293 (31%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 368 YRWLRRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL 420
>gi|403299442|ref|XP_003940495.1| PREDICTED: neuronal PAS domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 522
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 122/292 (41%), Gaps = 88/292 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 63 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 122
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P ++S S + +SL SS + +RSF
Sbjct: 123 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSSLADTPESEASLTKEPPSSLVQ--ERSFF 180
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 181 VRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFR 240
Query: 138 --------------------------GLSQWQVI----------------NKGQVLTHYY 155
G S +Q + +KGQV+T YY
Sbjct: 241 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYY 300
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
R + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL
Sbjct: 301 RWLQRTGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL 352
>gi|1695805|gb|AAC51214.1| MOP5 [Homo sapiens]
Length = 481
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 117/255 (45%), Gaps = 61/255 (23%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-S 72
QVEMTGSSVFDYIH DH+E+ EQLGL P ++S S T P++ +
Sbjct: 65 QVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEA 122
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRF 126
SL + SS + +RSF +RMKSTLTKRG H K+SGY+ L A L + G
Sbjct: 123 SLTKVPPSSLVQ--ERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHT 180
Query: 127 LYISETVSIYL----------------------------------GLSQWQVI------- 145
L + + L G S +Q +
Sbjct: 181 LPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATR 240
Query: 146 ---------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
+KGQV+T YYR + + GG+ W+QS ATV S K+ E +++ V++V+S E
Sbjct: 241 IRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAE 300
Query: 197 YENFIMDCCQLEDYI 211
+D QL +
Sbjct: 301 GGQTPLDAFQLPASV 315
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H +SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 28 HLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEM 68
>gi|149051228|gb|EDM03401.1| neuronal PAS domain protein 3 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 270
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 69/243 (28%)
Query: 34 LAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCI 92
+AEQLG+ L G GL S G+ ++ + ++ + P+ S ++ +RSF I
Sbjct: 1 MAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPGLLTTDNTLERSFFI 60
Query: 93 RMKSTLTKRGCHFKSSGYRSL--------------------------------------- 113
RMKSTLTKRG H KSSGY+ +
Sbjct: 61 RMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINE 120
Query: 114 -----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK--------------------- 147
F + D +Y ++ Y+ L+ ++ K
Sbjct: 121 VRIDCHMFVTRVNMDLNIIYCENRITDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDL 180
Query: 148 ---GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
GQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++ MD
Sbjct: 181 LNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDI 240
Query: 205 CQL 207
QL
Sbjct: 241 AQL 243
>gi|326920748|ref|XP_003206630.1| PREDICTED: neuronal PAS domain-containing protein 3-like, partial
[Meleagris gallopavo]
Length = 667
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 82/190 (43%), Gaps = 68/190 (35%)
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------------------- 113
+RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 14 LERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHAL 73
Query: 114 ------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI---------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 74 PPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGI 133
Query: 146 --------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA E+NII VNY++S EY
Sbjct: 134 RHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAVNAKNASEKNIIWVNYLLSNPEY 193
Query: 198 ENFIMDCCQL 207
++ MD QL
Sbjct: 194 KDTPMDIAQL 203
>gi|326675477|ref|XP_003200364.1| PREDICTED: neuronal PAS domain-containing protein 3-like [Danio
rerio]
Length = 721
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 87/196 (44%), Gaps = 68/196 (34%)
Query: 86 CDRSFCIRMKSTLTKRGCHFKSSGY------------------RSLDG------------ 115
+RSF IRMKSTLTKRG H KSSGY RS+
Sbjct: 37 LERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRIRMALTHSRSVPNQIMGMVVVAHAL 96
Query: 116 --------------FAFALGSDGRFLYISETVSIYLGL---------------------- 139
F + D +Y +S Y+ L
Sbjct: 97 PPPTINEVRIDCQMFVTRVNMDLNIVYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGI 156
Query: 140 --SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
S ++NKGQ +T YYR + KNGGY W+QS AT+ ++KNA+E+NII VNYV+S EY
Sbjct: 157 RQSHLDLLNKGQCVTKYYRWIQKNGGYIWIQSSATIAINAKNANEKNIIWVNYVLSNPEY 216
Query: 198 ENFIMDCCQLEDYIQQ 213
++ MD QL + ++
Sbjct: 217 KDTPMDIAQLPNLPEK 232
>gi|170040698|ref|XP_001848127.1| trachealess [Culex quinquefasciatus]
gi|167864310|gb|EDS27693.1| trachealess [Culex quinquefasciatus]
Length = 654
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 74/150 (49%), Gaps = 51/150 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H GTHILQ VEMTGSS+FDY+H+ DH
Sbjct: 200 EMFETHLGTHILQSLDGFALSTGVDGRFLYISETVSIYLGLSQVEMTGSSIFDYVHKQDH 259
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSS--------SSSY 83
EL QLG+ + E SG P+ + L SS + SY
Sbjct: 260 AELEHQLGV-------------KKNSEYSGYVYADDPPEKTVLKIASSKDPKPTQFAESY 306
Query: 84 KGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+G DR+FCIRMKSTLTKRGCHFKSSGYR +
Sbjct: 307 EGDDRAFCIRMKSTLTKRGCHFKSSGYRVI 336
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S ++I KGQVLT +YR++NK GY W+Q+C T+VC +KN +Q +ICVNY+I+ E
Sbjct: 437 LRKSHSELIQKGQVLTPFYRILNKTSGYFWIQTCCTMVCQTKNMADQTVICVNYIITRPE 496
Query: 197 YENFIMDCCQLEDYI 211
EN I+D Q+ + +
Sbjct: 497 RENLILDISQMPNVV 511
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H + +SLDGFA + G DGRFLYISETVSIYLGLSQ ++
Sbjct: 205 HLGTHILQSLDGFALSTGVDGRFLYISETVSIYLGLSQVEM 245
>gi|344273381|ref|XP_003408500.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 3-like [Loxodonta africana]
Length = 915
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 79/146 (54%), Gaps = 35/146 (23%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 131 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 190
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 191 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 248
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 249 RSFFIRMKSTLTKRGVHIKSSGYKVI 274
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S ++NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 370 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 429
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 430 TPMDIAQL 437
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 103 CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H S +SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 136 AHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 177
>gi|157128236|ref|XP_001661358.1| neuronal pas domain protein [Aedes aegypti]
gi|108882245|gb|EAT46470.1| AAEL002343-PA [Aedes aegypti]
Length = 599
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 74/145 (51%), Gaps = 45/145 (31%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H GTHILQ VEMTGSS+FDYIH+ DH
Sbjct: 153 EMFETHLGTHILQSLDGFAVSTGVDGRFLYISETVSIYLGLSQVEMTGSSIFDYIHKGDH 212
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSS---SSYKGCDR 88
E+ +QLG+ NS+ SG + V ++ S +Y+G DR
Sbjct: 213 AEVEQQLGV------------KKNSDYYSGYSDEPPEKTVLKIVKDSKPLPGETYEGDDR 260
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSL 113
+FC+RMKSTLTKRGCHFKSSGYR +
Sbjct: 261 AFCVRMKSTLTKRGCHFKSSGYRVI 285
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S ++I KGQVLT +YR++NKN GY W+Q+C T+VC +KN +Q +ICVNY+I+ E
Sbjct: 377 LKKSHSELIQKGQVLTPFYRILNKNSGYFWIQTCCTMVCQTKNMSDQTVICVNYIITRPE 436
Query: 197 YENFIMDCCQL 207
EN I+D Q+
Sbjct: 437 KENLILDISQM 447
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H + +SLDGFA + G DGRFLYISETVSIYLGLSQ ++
Sbjct: 158 HLGTHILQSLDGFAVSTGVDGRFLYISETVSIYLGLSQVEM 198
>gi|157106764|ref|XP_001649472.1| neuronal pas domain protein [Aedes aegypti]
gi|108868781|gb|EAT33006.1| AAEL014740-PA [Aedes aegypti]
Length = 599
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 74/145 (51%), Gaps = 45/145 (31%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H GTHILQ VEMTGSS+FDYIH+ DH
Sbjct: 153 EMFETHLGTHILQSLDGFAVSTGVDGRFLYISETVSIYLGLSQVEMTGSSIFDYIHKGDH 212
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSS---SSYKGCDR 88
E+ +QLG+ NS+ SG + V ++ S +Y+G DR
Sbjct: 213 AEVEQQLGV------------KKNSDYYSGYSDEPPEKTVLKIVKDSKPLPGETYEGDDR 260
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSL 113
+FC+RMKSTLTKRGCHFKSSGYR +
Sbjct: 261 AFCVRMKSTLTKRGCHFKSSGYRVI 285
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 52/71 (73%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S ++I KGQVLT +YR++NKN GY W+Q+C T+VC +K+ +Q +ICVNY+I+ E
Sbjct: 377 LKKSHSELIQKGQVLTPFYRILNKNSGYFWIQTCCTMVCQTKSMSDQTVICVNYIITRPE 436
Query: 197 YENFIMDCCQL 207
EN I+D Q+
Sbjct: 437 KENLILDISQM 447
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H + +SLDGFA + G DGRFLYISETVSIYLGLSQ ++
Sbjct: 158 HLGTHILQSLDGFAVSTGVDGRFLYISETVSIYLGLSQVEM 198
>gi|335289857|ref|XP_003127301.2| PREDICTED: neuronal PAS domain-containing protein 1-like [Sus
scrofa]
Length = 594
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 149/377 (39%), Gaps = 133/377 (35%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN-PDV-SSLMSLSSSSSYKGCDRS 89
+E+ EQLGL P +S S ++ A+ P++ +S +S SS + +RS
Sbjct: 192 SEVLEQLGLRAPTSGPPTPPSVPSSSSSSSSSSSFADTPEIEASPTEMSPSSRVQ--ERS 249
Query: 90 FCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------ 137
F IRMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 250 FFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIV 309
Query: 138 ----------------------------GLSQWQVI---NKGQVLTHYYRLMNK----NG 162
G S +Q + + ++ + L++K G
Sbjct: 310 FRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVMTG 369
Query: 163 GYTW---------VQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL------ 207
Y W +QS ATV S K+ E++++ V+YV+S E +D QL
Sbjct: 370 YYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEAGETPLDAFQLPASLAC 429
Query: 208 ---------------------------EDYIQQRG-VKREEPSNNDPENDSPDADREDGR 239
E+ Q RG + EPS +PE DRED
Sbjct: 430 EDASSPEPEPTEPEPPVEGKQAAPREEEEAPQPRGKAIKMEPSPQEPE------DRED-- 481
Query: 240 NSGDSRNHDHLSPPDIE 256
SGD HL+PP E
Sbjct: 482 -SGDEEPSGHLAPPRPE 497
>gi|431909210|gb|ELK12800.1| Neuronal PAS domain-containing protein 1 [Pteropus alecto]
Length = 594
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 144/358 (40%), Gaps = 95/358 (26%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN-PDVSSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P +S S ++ A+ P++ + +S + +RSF
Sbjct: 192 SEVLEQLGLRARIPGPPTPPSVPSSSSSSSSSSSLADTPEIEA-GPTEVPASARVQERSF 250
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 251 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVF 310
Query: 138 ---------------------------GLSQWQVI---NKGQVLTHYYRLMNKN------ 161
G S +Q + + ++ + L++K
Sbjct: 311 RLSLGLTILACESRVSEHMDLGPSELVGRSCYQFVHGQDAARIRQSHLDLLDKGQVVTGY 370
Query: 162 -------GGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQR 214
GG+ W+QS ATV S K+ E++++ V+YV+S E +D QL
Sbjct: 371 YRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGSQTPLDAFQLPARAACE 430
Query: 215 GVKREEPSNNDPENDSPDAD-REDGRNSGDSRNHDHLSPPDIEDGTSEG---DNSGDQ 268
V EP +P +P + ++ D H +E G E ++SGD+
Sbjct: 431 DVSSPEP---EPAELAPAVEGKQAAPLEKDEAPQSHGKLIKVEPGPGETKDLEDSGDE 485
>gi|194215671|ref|XP_001500949.2| PREDICTED: neuronal PAS domain-containing protein 1 [Equus
caballus]
Length = 479
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 124/294 (42%), Gaps = 90/294 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 15 EIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 74
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN-PDVSSLMSLSSSSSYKGC-DRS 89
+E+ EQLGL P +S S ++ A+ P++ + + S SS G +RS
Sbjct: 75 SEVLEQLGLRAPTPGPPTPPSVPSSSSSSSSSSSLADTPEIEASPAEGSPSS--GVQERS 132
Query: 90 FCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------ 137
F IRMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 133 FFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHTIV 192
Query: 138 ----------------------------GLSQWQVI---NKGQVLTHYYRLMNKN----- 161
G S +Q + + ++ + L++K
Sbjct: 193 FRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAARIRQSHLDLLDKGQVMTG 252
Query: 162 --------GGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GG+ W+QS ATV S K+ E++++ V+YV+S E +D QL
Sbjct: 253 YYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGQTPLDAFQL 306
>gi|390359228|ref|XP_003729433.1| PREDICTED: uncharacterized protein LOC578593 isoform 1
[Strongylocentrotus purpuratus]
Length = 928
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 121/311 (38%), Gaps = 106/311 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E++E H G+HILQ VE+ G SVFDY+H DH
Sbjct: 143 EVYEHHLGSHILQSLDGFLFALYRDGRFLYISETVSIYLGLSQVELMGCSVFDYVHPGDH 202
Query: 32 TELAEQLGLGLSQGHGLA-------SPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYK 84
ELAEQLG+ L + + G++ S G+G + ++L+ ++S
Sbjct: 203 AELAEQLGMKLPPNKTSSSSPSSTNADGNSTSGSGAGSPAAIGPSAIQDDVTLNMTASSD 262
Query: 85 GCDRSFCIRMKSTLTKRGCHFKSSGYR--------------------------------- 111
+RSF IRMKSTLTKRG HFKSSGY+
Sbjct: 263 RIERSFLIRMKSTLTKRGVHFKSSGYKVIHVTGALRPELSLSQYNHHPPNVLGFVAVGYS 322
Query: 112 ---------SLDGFAFALGSDGRF--LYISETVSIYLGLSQWQVINK-----------GQ 149
LD F D F + + +L S VI K
Sbjct: 323 LPPPTISEVRLDPTMFMCKVDLDFTITFCEAKIGDFLDHSADSVIGKSFYSYIHAQDIAN 382
Query: 150 VLTHYYRLMNK----NGGYTW---------VQSCATVVCSSKNADEQNIICVNYVISGRE 196
V T + L+NK Y W VQ+ AT +C +KN+++ + I +N VIS E
Sbjct: 383 VRTSHQDLLNKGQTITKYYRWMLKEGGYIWVQTTAT-LCYAKNSNDSSFIFINQVISHVE 441
Query: 197 YENFIMDCCQL 207
+ MD Q+
Sbjct: 442 HGEVAMDISQI 452
>gi|390359226|ref|XP_783845.2| PREDICTED: uncharacterized protein LOC578593 isoform 2
[Strongylocentrotus purpuratus]
Length = 947
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 121/311 (38%), Gaps = 106/311 (34%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E++E H G+HILQ VE+ G SVFDY+H DH
Sbjct: 162 EVYEHHLGSHILQSLDGFLFALYRDGRFLYISETVSIYLGLSQVELMGCSVFDYVHPGDH 221
Query: 32 TELAEQLGLGLSQGHGLA-------SPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYK 84
ELAEQLG+ L + + G++ S G+G + ++L+ ++S
Sbjct: 222 AELAEQLGMKLPPNKTSSSSPSSTNADGNSTSGSGAGSPAAIGPSAIQDDVTLNMTASSD 281
Query: 85 GCDRSFCIRMKSTLTKRGCHFKSSGYR--------------------------------- 111
+RSF IRMKSTLTKRG HFKSSGY+
Sbjct: 282 RIERSFLIRMKSTLTKRGVHFKSSGYKVIHVTGALRPELSLSQYNHHPPNVLGFVAVGYS 341
Query: 112 ---------SLDGFAFALGSDGRF--LYISETVSIYLGLSQWQVINK-----------GQ 149
LD F D F + + +L S VI K
Sbjct: 342 LPPPTISEVRLDPTMFMCKVDLDFTITFCEAKIGDFLDHSADSVIGKSFYSYIHAQDIAN 401
Query: 150 VLTHYYRLMNK----NGGYTW---------VQSCATVVCSSKNADEQNIICVNYVISGRE 196
V T + L+NK Y W VQ+ AT +C +KN+++ + I +N VIS E
Sbjct: 402 VRTSHQDLLNKGQTITKYYRWMLKEGGYIWVQTTAT-LCYAKNSNDSSFIFINQVISHVE 460
Query: 197 YENFIMDCCQL 207
+ MD Q+
Sbjct: 461 HGEVAMDISQI 471
>gi|426243059|ref|XP_004015382.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 1 [Ovis aries]
Length = 549
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 122/288 (42%), Gaps = 83/288 (28%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 125 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 184
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGLG P S P++ S +S SS + +RSF
Sbjct: 185 SEVLEQLGLGAPAPRPPPPPSPPPPSSLSQDLPLADTPEIEGSPAEISPSSRVQ--ERSF 242
Query: 91 CIRMKSTLTKRGCHFKSSGY-----RSLDGFAFALGSDGR------------------FL 127
IRMKSTLTKRG H K+SGY R+ G AL G L
Sbjct: 243 FIRMKSTLTKRGLHVKASGYKVGHCRARVG---ALSDSGTNPAPFTPSHGHGPLLPSSLL 299
Query: 128 YISETVSIYLGLSQWQVINK-------GQVLTHYYR----LMNK----NGGYTW------ 166
+ VS ++ L +++ + GQ T + L++K G Y W
Sbjct: 300 VPALRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVMTGYYRWLQRAGG 359
Query: 167 ---VQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
+QS ATV S K+ E++++ V+YV+S E E +D QL +
Sbjct: 360 FVWLQSVATVAVSGKSPGERHVLWVSYVLSQGEGEETPLDAFQLPASV 407
>gi|350586876|ref|XP_003356744.2| PREDICTED: neuronal PAS domain-containing protein 3, partial [Sus
scrofa]
Length = 221
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVS 72
+VE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+A + + ++ + P+
Sbjct: 23 EVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPV 82
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
S S ++ +RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 83 ESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVI 123
>gi|291413324|ref|XP_002722928.1| PREDICTED: neuronal PAS domain protein 1-like [Oryctolagus
cuniculus]
Length = 568
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 59/252 (23%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-GLSQGHGLASPGSANSEEGSGMNTGTAN-PDV 71
QVE+TGSSVFDYIH DH+E+ EQLGL + G ++S S ++ A+ PD+
Sbjct: 148 QVELTGSSVFDYIHPGDHSEVLEQLGLRARTPGPPTPPSVPSSSSSSSSSSSSLADTPDI 207
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGR 125
+ + + SS + +RSF +RMKSTLTKRG H K+SGY+ L A L + G
Sbjct: 208 EASPTEAPRSS-RAQERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGH 266
Query: 126 --------------------------FLYISETVSIYLGLSQWQVINK-------GQVLT 152
L VS ++ L +++ + GQ +T
Sbjct: 267 TLPPAPLPELPLHGHMIVFRLSLALTILACESRVSDHMDLGPAELVGRSCYQFVHGQDVT 326
Query: 153 HYYR----LMNKN-------------GGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
++ L++K GG+ W+QS ATV S K+ E++++ V++V+S
Sbjct: 327 RIHQSHLDLLDKGQVVTGYYRWLQRAGGFVWLQSVATVAGSGKSPGERHVLWVSHVLSQA 386
Query: 196 EYENFIMDCCQL 207
E + +D QL
Sbjct: 387 EDDQTPLDAFQL 398
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+SLDGF FAL DG+FLYISETVSIYLGLSQ
Sbjct: 118 QSLDGFVFALNQDGKFLYISETVSIYLGLSQ 148
>gi|312381665|gb|EFR27363.1| hypothetical protein AND_05980 [Anopheles darlingi]
Length = 701
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
L S ++I KGQVLT +YR++NK+ GY W+QSC T+VC +KN +Q +ICVNY+I+ E
Sbjct: 395 LKRSHSELIQKGQVLTPFYRILNKSSGYFWIQSCCTMVCQTKNMSDQTVICVNYIITKPE 454
Query: 197 YENFIMDCCQL 207
EN I+D Q+
Sbjct: 455 KENLILDVSQI 465
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 76/157 (48%), Gaps = 45/157 (28%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FE H GTHILQ VEMTGSS+FDY+H+ DH
Sbjct: 135 EMFETHLGTHILQSLDGFAISTGVDGRFLYISETVSIYLGLSQVEMTGSSIFDYVHKHDH 194
Query: 32 TELAEQLGLGLSQGH-GLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS--------- 81
E+ +QLG+ + + G E+ + A V L + S+
Sbjct: 195 AEVEQQLGIRKTSDYSAYGGYGDEPPEKPVAPSVVAAASTVLKLDNKQDSNGGGGGGLKP 254
Query: 82 -----SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+++G DR+FCIRMKSTLTKRGCHFKSSGYR +
Sbjct: 255 LLPGETFEGDDRAFCIRMKSTLTKRGCHFKSSGYRVI 291
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H + +SLDGFA + G DGRFLYISETVSIYLGLSQ ++
Sbjct: 140 HLGTHILQSLDGFAISTGVDGRFLYISETVSIYLGLSQVEM 180
>gi|345315839|ref|XP_001514446.2| PREDICTED: neuronal PAS domain-containing protein 1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 29/198 (14%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TGSSVFDY+H DH+E+ EQLGLG S L P S + ++ S
Sbjct: 37 QVELTGSSVFDYVHPGDHSEVLEQLGLGSSP---LPRPLGPPSSGSTSSSSSLPEASESP 93
Query: 74 LMSLS--SSSSYKGCDR--SFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYI 129
+L S G +R + S L R C+ +F++
Sbjct: 94 HPALGDGRESQIGGQERVSDYMDLGPSELVGRSCY--------------------QFIHG 133
Query: 130 SETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVN 189
+ I W ++KGQV+T YYR + K GG+ W+Q+CAT+ S+K+ E++ + VN
Sbjct: 134 EDVAGIRRSHLDW--LDKGQVVTGYYRWLQKAGGFVWLQTCATISSSAKDPGERHGVWVN 191
Query: 190 YVISGREYENFIMDCCQL 207
YV+S E + +D QL
Sbjct: 192 YVLSHPEGRHTALDVFQL 209
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+SLDGF FAL +G+FLYISETVSIYLGLSQ
Sbjct: 7 QSLDGFVFALNQEGKFLYISETVSIYLGLSQ 37
>gi|300798547|ref|NP_001179586.1| neuronal PAS domain-containing protein 1 [Bos taurus]
gi|296477577|tpg|DAA19692.1| TPA: neuronal PAS domain protein 1-like [Bos taurus]
Length = 587
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 127/300 (42%), Gaps = 90/300 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 125 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 184
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN-PDV-SSLMSLSSSSSYKGCDRS 89
+E+ EQLGL P +S S ++ A+ P++ +S +S SS + +RS
Sbjct: 185 SEVLEQLGLRAPTPGPPTPPSVPSSSSSSSSSSSLADTPEIEASPTEVSRSSRVQ--ERS 242
Query: 90 FCIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------ 137
F IRMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 243 FFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIV 302
Query: 138 ----------------------------GLSQWQVI---NKGQVLTHYYRLMNK----NG 162
G S +Q + + ++ + L++K G
Sbjct: 303 FRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVMTG 362
Query: 163 GYTW---------VQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQ 213
Y W +QS ATV S K+ E++++ V+YV+S E E +D QL + +
Sbjct: 363 YYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGEQTPLDAFQLPASVAR 422
>gi|350586874|ref|XP_003482293.1| PREDICTED: neuronal PAS domain-containing protein 3-like [Sus
scrofa]
Length = 580
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
V+NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++ MD
Sbjct: 25 VLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMD 84
Query: 204 CCQL 207
QL
Sbjct: 85 IAQL 88
>gi|431917834|gb|ELK17068.1| Neuronal PAS domain-containing protein 3 [Pteropus alecto]
Length = 710
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
V+NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++ MD
Sbjct: 176 VLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMD 235
Query: 204 CCQL 207
QL
Sbjct: 236 IAQL 239
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
V+NKGQ +T YYR M KNGG W+QS AT+ ++KNA+E+NII VNY++
Sbjct: 106 VLNKGQCVTKYYRWMQKNGGEVWIQSSATIAINAKNANEKNIIWVNYLL 154
>gi|47208337|emb|CAF89974.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 51/70 (72%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
V+NKGQ +T YYR + K+GGY W+QS AT+ ++KNA E+NI+ VNYV+S EY++ MD
Sbjct: 1 VMNKGQCVTKYYRWIQKSGGYIWIQSSATIAINAKNASEKNIVWVNYVLSNPEYKDTPMD 60
Query: 204 CCQLEDYIQQ 213
QL + ++
Sbjct: 61 IAQLPNLPEK 70
>gi|73948103|ref|XP_541539.2| PREDICTED: neuronal PAS domain-containing protein 1 [Canis lupus
familiaris]
Length = 594
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 120/292 (41%), Gaps = 87/292 (29%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 133 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 192
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P +S S ++ P++ + + + S + +RSF
Sbjct: 193 SEVLEQLGLRTPTPGPPTPPSVPSSSSSSSSSSLADTPEIEASAAEAPPFS-RVQERSFF 251
Query: 92 IRMKSTLTKRGCHFKSSGY-----------RSLDGFA---------------------FA 119
IRMKSTLTKRG H K+SGY RSL A F
Sbjct: 252 IRMKSTLTKRGLHVKASGYKVIHVTGRLRARSLGLVALGHTLPPAPLAELPLHGHMIVFR 311
Query: 120 LGSDGRFLYISETVSIYLGLSQWQVINK-----------GQVLTHYYRLMNK----NGGY 164
L L VS ++ L +++ + ++ + L++K G Y
Sbjct: 312 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAARIRQSHLDLLDKGQVMTGYY 371
Query: 165 TW---------VQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
W +QS ATV S K+ E++++ V+YV+S E +D QL
Sbjct: 372 RWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGQTPLDAFQL 423
>gi|410982742|ref|XP_003997707.1| PREDICTED: neuronal PAS domain-containing protein 1 [Felis catus]
Length = 599
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 120/296 (40%), Gaps = 87/296 (29%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 138 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 197
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL P +S S ++ P++ + + S + +RSF
Sbjct: 198 SEVLEQLGLRARTPGPPTPPSVPSSSSSSSSSSLADTPEIEASPAEVPHFS-RAQERSFF 256
Query: 92 IRMKSTLTKRGCHFKSSGY-----------RSLDGFA---------------------FA 119
IRMKSTLTKRG H K+SGY RSL A F
Sbjct: 257 IRMKSTLTKRGLHVKASGYKVIHVTGRLRARSLGLVALGHTLPPAPLAELPLHGHMIVFR 316
Query: 120 LGSDGRFLYISETVSIYLGLSQWQVINK-----------GQVLTHYYRLMNK----NGGY 164
L L VS ++ L +++ + ++ + L++K G Y
Sbjct: 317 LSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAARIRQSHLDLLDKGQVMTGYY 376
Query: 165 TW---------VQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
W +QS ATV S K+ E++++ V+YV+S E +D QL +
Sbjct: 377 RWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGQTPLDAFQLPASV 432
>gi|47224749|emb|CAG00343.1| unnamed protein product [Tetraodon nigroviridis]
Length = 593
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QV++TG S+FD+ H DH E+ E L L + G G G S E
Sbjct: 43 LTQVDLTGHSIFDFTHPCDHEEIRENLSLR-TAGKGFDKKGKEMSAERDFFMRMKCTVTT 101
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A+ V L Y GC R C + LT + + S
Sbjct: 102 RGRTVNLKSASWKV--LHCTGQLKMYNGCPPRGLCGFREPPLTCAVLMCEPIPHPSNIDT 159
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------ 145
+D F D +F Y E V+ +G + ++
Sbjct: 160 PMDSRTFLSRHSMDMKFTYCDERVTELMGYTPEDLLGRSVYDFYHALDSENVTKSHQNLC 219
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQ +T YR++ KNGGY WV++ TV+ +S+N+ Q I+C+NY++S E ++ I
Sbjct: 220 TKGQAVTAQYRMLAKNGGYVWVETQGTVIYNSRNSQPQCIVCINYILSDVEEKSTIFSLE 279
Query: 206 QLEDYIQQRGVKR 218
Q+E + R R
Sbjct: 280 QIESLFKPRHASR 292
>gi|426226414|ref|XP_004007338.1| PREDICTED: LOW QUALITY PROTEIN: endothelial PAS domain-containing
protein 1 [Ovis aries]
Length = 853
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 72/238 (30%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 137 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 178
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------D 114
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 179 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVLHCTGQVKVYSNCPPSK 225
Query: 115 GFAFALGSDGRFLY----ISETVSIY----LGLSQWQ----------------VINKGQV 150
F D +F Y I+E V + LG S ++ + KGQV
Sbjct: 226 TFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQV 285
Query: 151 LTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + + Q E
Sbjct: 286 VSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMDQTE 343
>gi|83778886|gb|ABC47310.1| hypoxia-inducible factor 1 alpha [Oryzias melastigma]
Length = 748
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 113/287 (39%), Gaps = 111/287 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG +VFDY H D EL E L + GS ++E +
Sbjct: 123 LAQFDLTGQNVFDYTHPCDQEELREML---------VYRTGSKKAKEPNS---------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKS--------SGYRSLDGFAFALG 121
+RSF +RMK TLT RG + KS SG+ ++G
Sbjct: 164 ---------------ERSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVHVNGVQAEQN 208
Query: 122 SDG---------------------------------------RFLYISETVSIYLGLSQW 142
S+G +F Y E ++ +G
Sbjct: 209 SNGQKEPPVPYLVLICDPIPHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPE 268
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K+GG+ WV++ ATV+ ++K
Sbjct: 269 DLLNRSIYEYYHALDSDHLTKTHHNLFAKGQVCTGRYRMLAKSGGFVWVETQATVIYNNK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNND 225
N+ Q ++CVN+V+SG + E IM Q+ED + VK EEP D
Sbjct: 329 NSQPQCVVCVNFVLSGIQEEKLIMSLDQIEDV---KSVK-EEPQEAD 371
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 99 TKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
T+ F SS ++LDGF L DG +Y+SE V+ LGL+Q+ +
Sbjct: 83 TELDMKFNSSYLKALDGFLMVLSEDGDIIYLSENVNKCLGLAQFDL 128
>gi|326672423|ref|XP_695262.5| PREDICTED: endothelial PAS domain-containing protein 1 [Danio
rerio]
Length = 810
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 104/274 (37%), Gaps = 104/274 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L + +G +G M+T
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSIKSGPVYG---------RKGKEMSTS------ 165
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
R F +RMK T+T RG + KS+ ++ L
Sbjct: 166 ----------------RDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLQVCSSRPPQI 209
Query: 114 -------------------------------DGFAFALGSDGRFLYISETVSIYLGL--- 139
F D +F+Y E VS +G
Sbjct: 210 LCGFSEPPLTCITMLCAPIPHPSNVDTPLDSKTFMSRHSMDMKFIYCDERVSSLIGYRPE 269
Query: 140 ---------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S + NKGQV++ YR++ KNGGY WV++ ATV+ +++
Sbjct: 270 ELLGRSVYEFCHALDSENMTKSHQNLCNKGQVVSGQYRMLAKNGGYVWVETQATVIYNNR 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q IIC+NY++S E ++ I Q E +
Sbjct: 330 NSQPQCIICINYILSSVEEQSVIFSLDQTEALFK 363
>gi|328708224|ref|XP_001944204.2| PREDICTED: single-minded homolog 2-like isoform 1 [Acyrthosiphon
pisum]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 99/257 (38%), Gaps = 92/257 (35%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIHQADH E+ L L Q E MN S+
Sbjct: 122 QVELTGNSIFEYIHQADHDEMISVLSPPLPQN---------LPAENMMMN--------ST 164
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+ L R F +RMK L KR + GY+ +
Sbjct: 165 VFELP---------RVFFLRMKCVLAKRNAGLTTGGYKVIHCSGYLKVRQYPAGMPGVET 215
Query: 114 ----------------------DGFAFALGSDGRFLYISETVSIYLG------------- 138
+ F F D + +++ VS G
Sbjct: 216 VGLVAVGHSLPPHAITEIKLHSNMFMFRASLDLKLIFLDARVSQLTGYEPQDLIEKTLYH 275
Query: 139 -----------LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
LS ++ KGQV T YYRL+ K+GG+ WVQS AT+V +S+++ I+
Sbjct: 276 YIHGNDIHNMKLSHHTLLLKGQVTTKYYRLLAKDGGWVWVQSYATIVHNSRSSRPHCIVS 335
Query: 188 VNYVISGREYENFIMDC 204
VNYV+S E ++ +
Sbjct: 336 VNYVLSESEMKDVCLSV 352
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF F +G DG+ +YISET S++LGLSQ ++
Sbjct: 92 QSLDGFIFVVGGDGKIMYISETASVHLGLSQVEL 125
>gi|328708220|ref|XP_003243627.1| PREDICTED: single-minded homolog 2-like isoform 2 [Acyrthosiphon
pisum]
Length = 556
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 99/257 (38%), Gaps = 92/257 (35%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIHQADH E+ L L Q E MN S+
Sbjct: 117 QVELTGNSIFEYIHQADHDEMISVLSPPLPQN---------LPAENMMMN--------ST 159
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+ L R F +RMK L KR + GY+ +
Sbjct: 160 VFELP---------RVFFLRMKCVLAKRNAGLTTGGYKVIHCSGYLKVRQYPAGMPGVET 210
Query: 114 ----------------------DGFAFALGSDGRFLYISETVSIYLG------------- 138
+ F F D + +++ VS G
Sbjct: 211 VGLVAVGHSLPPHAITEIKLHSNMFMFRASLDLKLIFLDARVSQLTGYEPQDLIEKTLYH 270
Query: 139 -----------LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
LS ++ KGQV T YYRL+ K+GG+ WVQS AT+V +S+++ I+
Sbjct: 271 YIHGNDIHNMKLSHHTLLLKGQVTTKYYRLLAKDGGWVWVQSYATIVHNSRSSRPHCIVS 330
Query: 188 VNYVISGREYENFIMDC 204
VNYV+S E ++ +
Sbjct: 331 VNYVLSESEMKDVCLSV 347
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF F +G DG+ +YISET S++LGLSQ ++
Sbjct: 87 QSLDGFIFVVGGDGKIMYISETASVHLGLSQVEL 120
>gi|125654604|gb|AAZ95453.2| hypoxia-inducible factor [Dicentrarchus labrax]
Length = 754
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 109/281 (38%), Gaps = 110/281 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+IH D EL E L + GS S+E NTG
Sbjct: 124 LAQFDLTGHSVFDFIHPCDQDELREML---------VHRTGSKKSKEP---NTG------ 165
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
RSF +RMK TLT RG + KS+ ++ L
Sbjct: 166 ----------------RSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVHVYDSHTEES 209
Query: 114 ----------------------DGFAFALGS---------DGRFLYISETVSIYLGLSQW 142
L S D +F Y E ++ +G
Sbjct: 210 TNGQKEPPIPYLVLICDPVPHPSNIEVPLDSKTFLSRHTMDMKFTYCDERITELMGYDPE 269
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N+ GQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 270 DLLNRSVYEYYHAQDSDHLTKTHQNLFAKGQVCTGQYRMLAKRGGFVWVETQATVIYNNK 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
N+ Q ++CVN+V+SG + E I+ Q+ED + VK E
Sbjct: 330 NSQPQCVVCVNFVLSGIQEEKLILSLEQIEDV---KPVKAE 367
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
MK T SS ++L+GF L DG +Y+SE ++ LGL+Q+ +
Sbjct: 79 MKDEETDLDLQLNSSYLKALEGFLMVLSEDGDMIYLSENINKCLGLAQFDL 129
>gi|328708222|ref|XP_003243628.1| PREDICTED: single-minded homolog 2-like isoform 3 [Acyrthosiphon
pisum]
Length = 593
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 99/255 (38%), Gaps = 92/255 (36%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIHQADH E+ L L Q E MN S+
Sbjct: 154 QVELTGNSIFEYIHQADHDEMISVLSPPLPQN---------LPAENMMMN--------ST 196
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+ L R F +RMK L KR + GY+ +
Sbjct: 197 VFELP---------RVFFLRMKCVLAKRNAGLTTGGYKVIHCSGYLKVRQYPAGMPGVET 247
Query: 114 ----------------------DGFAFALGSDGRFLYISETVSIYLG------------- 138
+ F F D + +++ VS G
Sbjct: 248 VGLVAVGHSLPPHAITEIKLHSNMFMFRASLDLKLIFLDARVSQLTGYEPQDLIEKTLYH 307
Query: 139 -----------LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
LS ++ KGQV T YYRL+ K+GG+ WVQS AT+V +S+++ I+
Sbjct: 308 YIHGNDIHNMKLSHHTLLLKGQVTTKYYRLLAKDGGWVWVQSYATIVHNSRSSRPHCIVS 367
Query: 188 VNYVISGREYENFIM 202
VNYV+S E ++ +
Sbjct: 368 VNYVLSESEMKDVCL 382
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF F +G DG+ +YISET S++LGLSQ ++
Sbjct: 124 QSLDGFIFVVGGDGKIMYISETASVHLGLSQVEL 157
>gi|348501488|ref|XP_003438301.1| PREDICTED: endothelial PAS domain-containing protein 1 [Oreochromis
niloticus]
Length = 879
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 103/276 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GS ++G ++T
Sbjct: 122 LTQVELTGHSIFDFTHPCDHDEIRENLSLKTT--------GSGFGKKGKELST------- 166
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY-----------------RS 112
+R F +RMK T+T RG + KS+ + R
Sbjct: 167 ---------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGQLRMYNSCPPRV 211
Query: 113 LDGFA---------------------FALGS---------DGRFLYISETVSIYLGL--- 139
L GF L S D +F Y E V+ +G
Sbjct: 212 LCGFKEPPLTCAVLMCEPIPHPSNIDTPLDSKTFLSRHSMDMKFTYCDERVTELMGYTPE 271
Query: 140 ---------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S + KGQ ++ YR++ KNGGY WV++ TV+ +S+
Sbjct: 272 DLLGRSIYDFYHALDSDSVTKSHQNLCTKGQAVSGQYRMLAKNGGYVWVETQGTVIYNSR 331
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQR 214
N+ Q I+C+NYV+S E ++ I+ Q E + R
Sbjct: 332 NSQPQCIVCINYVLSDIEEKSMILSLEQTESLFKPR 367
>gi|442618830|ref|NP_001262527.1| single-minded, isoform C [Drosophila melanogaster]
gi|440217377|gb|AGB95909.1| single-minded, isoform C [Drosophila melanogaster]
Length = 675
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 126 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 185
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 186 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 230
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 231 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 290
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 291 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 350
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 351 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 389
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 78 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 129
>gi|45551885|ref|NP_731771.3| single-minded, isoform B [Drosophila melanogaster]
gi|45446472|gb|AAN14343.3| single-minded, isoform B [Drosophila melanogaster]
Length = 664
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 115 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 174
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 175 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 219
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 220 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 279
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 280 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 339
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 340 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 378
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 67 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 118
>gi|28571685|ref|NP_524340.2| single-minded, isoform A [Drosophila melanogaster]
gi|21744281|gb|AAM76199.1| RE54280p [Drosophila melanogaster]
gi|28381286|gb|AAF54902.3| single-minded, isoform A [Drosophila melanogaster]
Length = 688
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|31077159|sp|P05709.3|SIM_DROME RecName: Full=Protein single-minded
Length = 697
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|195571241|ref|XP_002103612.1| GD18883 [Drosophila simulans]
gi|194199539|gb|EDX13115.1| GD18883 [Drosophila simulans]
Length = 697
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|194901552|ref|XP_001980316.1| GG19445 [Drosophila erecta]
gi|190652019|gb|EDV49274.1| GG19445 [Drosophila erecta]
Length = 698
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|227430297|ref|NP_001153057.1| single-minded homolog 1b [Danio rerio]
gi|226426422|gb|ACO54510.1| Sim1b long isoform [Danio rerio]
Length = 586
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 100/264 (37%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++Y+H ADH E+A L T P S
Sbjct: 124 QVELTGNSIYEYVHPADHDEMAAVL---------------------------TPQPSYHS 156
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR-------------SLDG----- 115
Y+ +RSF +RMK L KR S GY+ SLD
Sbjct: 157 HFV----QEYE-VERSFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLKIRQFSLDASPFDG 211
Query: 116 ----------------------------FAFALGSDGRFLYISETVS------------- 134
F F D + +++ VS
Sbjct: 212 CYQNVGLVAVGHTLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVSDLTGYEPQDLIEK 271
Query: 135 -----------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
+L + ++ KGQV T YYR ++K GG+ WVQS AT+V +S+++
Sbjct: 272 TLYHHVHCCDSFHLRCAHHLLLVKGQVTTKYYRFLSKRGGWVWVQSYATIVHNSRSSRPH 331
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ I+ QL
Sbjct: 332 CIVSVNYVLTDTEYKGLILSLDQL 355
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 107 SSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S ++LDGF F + +DG+ +YISET S++LGLSQ ++
Sbjct: 90 SKMLQTLDGFIFVVAADGKIMYISETASVHLGLSQVEL 127
>gi|195500692|ref|XP_002097482.1| GE26246 [Drosophila yakuba]
gi|194183583|gb|EDW97194.1| GE26246 [Drosophila yakuba]
Length = 699
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 100 KRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+RG K G ++LDGF F + DG+ +YISET S+ LGLSQ ++
Sbjct: 95 QRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVQLGLSQVEL 142
>gi|220942606|gb|ACL83846.1| sim-PA [synthetic construct]
Length = 689
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|291222897|ref|XP_002731454.1| PREDICTED: neuronal PAS domain protein 3-like [Saccoglossus
kowalevskii]
Length = 962
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 10/105 (9%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TGSS FDY+H DH ELAEQLG+ L +S +A+ GSG + + P VSS
Sbjct: 180 QVELTGSSAFDYVHPGDHAELAEQLGMKLPPKSSNSSGEAASGSGGSGSGSTASTPTVSS 239
Query: 74 -------LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
M++S++ Y +RSF +R+KSTLTKRG H KSSGY+
Sbjct: 240 PIPLQGMTMTMSANPRY---ERSFFLRLKSTLTKRGVHIKSSGYK 281
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
VI KGQV+T YY+ + K GGY W+Q+ TV C SKN +++ ++C+NY++S EY+N +MD
Sbjct: 403 VITKGQVVTGYYKWLTKTGGYIWMQTSCTVTC-SKNTNDRVVVCINYILSPVEYKNCVMD 461
Query: 204 CCQLED 209
QL +
Sbjct: 462 ISQLPN 467
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF F L +DGRFLYISETVSIYLGLSQ ++
Sbjct: 150 QSLDGFLFILNNDGRFLYISETVSIYLGLSQVEL 183
>gi|407316772|gb|AFU07568.1| hypoxia-inducible factor 2 alpha subunit [Hypophthalmichthys
molitrix]
Length = 832
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 106/279 (37%), Gaps = 106/279 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G ++G +NT
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKAGMG-----------KKGKELNT------- 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
+R F +RMK T+T RG + KS+ ++
Sbjct: 163 ---------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLKVCNSCPARV 207
Query: 112 ---------------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
LD AF D +F Y + V+ +G S
Sbjct: 208 LCGFKEPPLTCVVMMCEPIPHPSNIDTPLDSKAFLSRHSMDMKFTYCDDRVTELMGYSPE 267
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++ KGQ ++ YR++ KNGGY WV++ TV+ +S+
Sbjct: 268 DLLGRSAYDFYHALDSDNVTKSHQNLCTKGQAVSGQYRMLAKNGGYVWVETQGTVIYNSR 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVK 217
N+ Q I+CVNYV+S E ++ I Q E + +K
Sbjct: 328 NSQPQCIVCVNYVLSDVEEKSMICSMDQTESLFKPHNLK 366
>gi|407316762|gb|AFU07563.1| hypoxia-inducible factor 2 alpha subunit [Hypophthalmichthys
nobilis]
Length = 832
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 106/279 (37%), Gaps = 106/279 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G ++G +NT
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKAGMG-----------KKGKELNT------- 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
+R F +RMK T+T RG + KS+ ++
Sbjct: 163 ---------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLKVCNSCPARV 207
Query: 112 ---------------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
LD AF D +F Y + V+ +G S
Sbjct: 208 LCGFKEPPLTCVVMMCEPIPHPSNIDTPLDSKAFLSRHSMDMKFTYCDDRVTELMGYSPE 267
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++ KGQ ++ YR++ KNGGY WV++ TV+ +S+
Sbjct: 268 DLLGRSAYDFYHALDSDNVTKSHQNLCTKGQAVSGQYRMLAKNGGYVWVETQGTVIYNSR 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVK 217
N+ Q I+CVNYV+S E ++ I Q E + +K
Sbjct: 328 NSQPQCIVCVNYVLSDVEEKSMICSMDQTESLFKPHNLK 366
>gi|380039560|gb|AFD32324.1| hypoxia-inducible factor 2 alpha B, partial [Aspius aspius]
Length = 472
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 101/270 (37%), Gaps = 104/270 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L + G G M+TG
Sbjct: 65 LTQVELTGHSIFDFTHPCDHEEIRENLSV---------KSGPVYGRRGKDMSTG------ 109
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
R F +RMK T+T RG + KS+ ++ L
Sbjct: 110 ----------------RDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLQVCSSRPPQV 153
Query: 114 -------------------------------DGFAFALGSDGRFLYISETVSIYLGL--- 139
F D +F+Y E +S +G
Sbjct: 154 LCGFSEPPLTCVTLLCAPIPHPSTIDTPLDSKTFMSRHSMDMKFIYCDERISSLIGYRPE 213
Query: 140 ---------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S + NKGQV++ YR++ K GGY WV++ ATV+ +++
Sbjct: 214 ELLGRSMYEFCHALDSESMTKSHQNLCNKGQVVSGQYRMLAKQGGYVWVETQATVIYNNR 273
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q IIC+NYV+S E ++ I Q E
Sbjct: 274 NSQPQCIICINYVLSSVEEQSLIFSLDQTE 303
>gi|158465|gb|AAA28900.1| sim nuclear protein, partial [Drosophila melanogaster]
Length = 655
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 97 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 156
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 157 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 201
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 202 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 261
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 262 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 321
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 322 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 360
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 49 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 100
>gi|442618832|ref|NP_001262528.1| single-minded, isoform D [Drosophila melanogaster]
gi|440217378|gb|AGB95910.1| single-minded, isoform D [Drosophila melanogaster]
Length = 672
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 115/287 (40%), Gaps = 94/287 (32%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGS-ANSEEGSGMNTGTANPDVS 72
QVE+TG+S+F+YIH D E+ L L H P + NS + + +T +P+
Sbjct: 115 QVELTGNSIFEYIHNYDQDEMNAILSL---HPHINQHPAAFLNSLQLAQTHTPIGSPN-- 169
Query: 73 SLMSLSSSSSY---KG-----CDRSFCIRMKSTLTKRGCHFKSSGYRSL----------- 113
+ S+Y +G +++F +RMK L KR +SG++ +
Sbjct: 170 ---GVQHPSAYDHDRGSHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIY 226
Query: 114 ----DG-------------------------------FAFALGSDGRFLYISETVSIYLG 138
DG F F D + ++ VS G
Sbjct: 227 PDRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTG 286
Query: 139 LSQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVV 174
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 287 YEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLV 346
Query: 175 CSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 347 HNSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 386
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 67 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 118
>gi|195329352|ref|XP_002031375.1| GM24085 [Drosophila sechellia]
gi|194120318|gb|EDW42361.1| GM24085 [Drosophila sechellia]
Length = 632
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 74 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 133
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 134 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 178
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 179 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 238
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 239 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 298
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 299 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 337
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 26 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 77
>gi|355707720|gb|AES03042.1| neuronal PAS domain protein 1 [Mustela putorius furo]
Length = 440
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 110/251 (43%), Gaps = 59/251 (23%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-S 72
QVE+TGSSVFDYIH DH+E+ EQLGL P +S S ++ P++ +
Sbjct: 34 QVELTGSSVFDYIHPGDHSEVLEQLGLRAPTPGPPTPPSVPSSSSSSSSSSLADTPEIEA 93
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGY-----------RSLDGFA---- 117
S + S + +RSF IRMKSTLTKRG H K+SGY RSL A
Sbjct: 94 SATEVPPFSRVQ--ERSFFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARSLGLVALGHT 151
Query: 118 -----------------FALGSDGRFLYISETVSIYLGLSQWQVINK-----------GQ 149
F L L VS ++ L +++ + +
Sbjct: 152 LPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAAR 211
Query: 150 VLTHYYRLMNK----NGGYTW---------VQSCATVVCSSKNADEQNIICVNYVISGRE 196
+ + L++K G Y W +QS ATV S K+ E++++ V+YV+S E
Sbjct: 212 IRQSHLDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAE 271
Query: 197 YENFIMDCCQL 207
+D QL
Sbjct: 272 GGQTPLDAFQL 282
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 4 QSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 37
>gi|50403829|gb|AAT76668.1| hypoxia-inducible factor 2 alpha [Ctenopharyngodon idella]
Length = 835
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 104/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G ++G +NT
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKAGMG-----------KKGKELNT------- 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
+R F +RMK T+T RG + KS+ ++
Sbjct: 163 ---------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLKVCNGCPARV 207
Query: 112 ---------------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
LD AF D +F Y + V+ +G S
Sbjct: 208 LCGFKEPPLTCVVMMCEPIPHPSNIDTPLDSKAFLSRHSMDMKFTYCDDRVTELMGYSPE 267
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++ KGQ ++ YR++ KNGGY WV++ TV+ +S+
Sbjct: 268 DLLGRSAYDFYHALDSDNVTKSHQNLCTKGQAVSGQYRMLAKNGGYVWVETQGTVIYNSR 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+S E ++ I Q E +
Sbjct: 328 NSQPQCIVCVNYVLSDVEEKSMIFSMDQTESLFK 361
>gi|296240121|gb|ADH01742.1| hypoxia-inducible factor 2 alpha [Callionymus valenciennei]
Length = 782
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 102/273 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QV++TG S+FD+ H DH E+ E L L +S G+A ++G NT
Sbjct: 117 LTQVDLTGHSIFDFTHPCDHEEIRENLNLKMS--------GAAFGKQGKEPNT------- 161
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
DR F +RMK T+T RG + KS+ ++ L
Sbjct: 162 ---------------DRDFFMRMKCTMTNRGRTVNLKSASWKVLHCTGHLKTYNRLSQVL 206
Query: 114 ------------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQ 143
F D +F Y ++V+ +G S
Sbjct: 207 RGPSEPPLTCAVLMCEPIPHPTNIEMPLESKTFLSRHSMDMKFTYCDDSVTELMGYSPED 266
Query: 144 VIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKN 179
+I KGQ ++ YR++ K GGY W+++ TV+ +++N
Sbjct: 267 LIGRSVYDFYHALDSDNVTKSHQNLCMKGQAVSRQYRMLAKTGGYVWMETQGTVIYNNRN 326
Query: 180 ADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
+ Q I+CVNYV+S E ++ ++ Q + Q
Sbjct: 327 SQPQCIVCVNYVLSDVEEKSSVLSLEQTKSLYQ 359
>gi|18859359|ref|NP_571911.1| single-minded homolog 2 [Danio rerio]
gi|18056651|gb|AAL58099.1|AF363019_1 single-minded protein [Danio rerio]
gi|40850960|gb|AAH65360.1| Single-minded homolog 2 (Drosophila) [Danio rerio]
Length = 585
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 95/254 (37%), Gaps = 99/254 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIH +DH E++ L T P +
Sbjct: 116 QVELTGNSIFEYIHPSDHDEMSAVLS--------------------------THQPLHTH 149
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+ +RSF +RMK L KR S GY+ +
Sbjct: 150 FLQ------ELELERSFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLQVRPLVLDVSVCQS 203
Query: 114 -----------------------DGFAFALGSDGRFLYISETVS---------------- 134
+ F F D + +++ VS
Sbjct: 204 CCQLVAVAHSLPPSGLTEIKLHSNMFMFRASLDLKLIFLDSRVSELTGHEPQDLIEKTLY 263
Query: 135 --------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNII 186
+L + ++ KGQV T YYRL++K GG+ WVQSCAT+V +S+++ I+
Sbjct: 264 HHVHGCDVFHLRFAHHLLLVKGQVTTRYYRLLSKRGGWVWVQSCATIVHNSRSSRPHCIV 323
Query: 187 CVNYVISGREYENF 200
VNYV++ EY
Sbjct: 324 SVNYVLTDVEYREL 337
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ LYISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKILYISETASVHLGLSQVEL 119
>gi|288887156|gb|ADC55886.1| hypoxia inducible factor-1alpha [Champsocephalus gunnari]
Length = 666
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 103/271 (38%), Gaps = 107/271 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+IH D EL E L + GS + E NT
Sbjct: 122 LAQFDLTGYSVFDFIHPCDQEELREML---------VHKTGSKKTREP---NTA------ 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY---------RSLDG----- 115
RSF +RMK TLT RG + KS+ + R DG
Sbjct: 164 ----------------RSFFLRMKCTLTSRGRTVNVKSAAWKVLHCSGHVRVYDGCTEET 207
Query: 116 ---------------------------------FAFALGSDGRFLYISETVSIYLGLSQW 142
F D +F Y E ++ +G
Sbjct: 208 PNGHKEPPVPYLVLICDPIQHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPE 267
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 268 DLLNRSVYDYYHAMDSDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLED 209
N+ Q I+CVN+V+SG + E ++ Q+ED
Sbjct: 328 NSQPQCIVCVNFVLSGIQEEKLVLSLEQMED 358
>gi|407316754|gb|AFU07559.1| hypoxia-inducible factor 1 alpha subunit [Protopterus annectens]
Length = 813
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 101/274 (36%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD++H DH EL E L H + ++G G +T
Sbjct: 119 LTQFELTGHSVFDFMHPCDHEELREMLT------HRIGP-----VKKGKGQST------- 160
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----------------------------- 102
+RSF +RMK TLT RG
Sbjct: 161 ---------------ERSFFLRMKCTLTSRGRTVNIKSATWKVLHCSGHIRVYESGSDQT 205
Query: 103 -CHFKSSGYRSL----------DGFAFALGS---------DGRFLYISETVSIYLGLSQW 142
C FK L L S D +F Y E ++ +G
Sbjct: 206 HCGFKEPPLTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYDPE 265
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 266 DLLNHSVYEYYHALDSDNLTKTHHDLFTKGQVTTGQYRMLAKEGGYVWVETQATVIYNTK 325
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q + ++
Sbjct: 326 NSQPQCIVCVNYVLSGIVEKGLIFSVEQTKSLMK 359
>gi|391325150|ref|XP_003737102.1| PREDICTED: single-minded homolog 1-like [Metaseiulus occidentalis]
Length = 496
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 104/278 (37%), Gaps = 106/278 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++Y+HQ DH E+A L +SP GS
Sbjct: 117 QVELTGNSIYEYVHQNDHDEMASVL--------SCSSPPEGGQPRGSQGEL--------- 159
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
DRSF +RMK L KR S GY+ +
Sbjct: 160 -----------EIDRSFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLKVKQYSLESAPYES 208
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLG--------- 138
+ F F D + +++ VS G
Sbjct: 209 CYQNLGLVAVGHSLPPSAVTEIKMHTNMFMFRASLDLKLIFLDSRVSALTGYEPQELIDK 268
Query: 139 ---------------LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
L+ Q++ KGQV T YYRL+ K GGY W+QS AT+V +S+++
Sbjct: 269 SLYQFVHVSDCMHLRLAHHQLLLKGQVTTKYYRLLCKGGGYVWMQSYATIVHNSRSSRPH 328
Query: 184 NIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
++ VNYV+S + +E IQQ GV +EP
Sbjct: 329 CVVSVNYVLSDIHERD-------IEVEIQQ-GVSLKEP 358
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFVFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|407316768|gb|AFU07566.1| hypoxia-inducible factor 2 alpha subunit [Gymnocypris namensis]
Length = 830
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 102/249 (40%), Gaps = 44/249 (17%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHG----------LASPGSANSEEGSG 61
+ QVE+TG S+FD+ H DH E+ E L L G + G
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKAGMGKKGKELRTERDFFMRMKCTVTNRGRT 180
Query: 62 MNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----LDG 115
+N +A+ V L Y GC R C + LT + + S LD
Sbjct: 181 VNLKSASWKV--LHCTGHLKVYDGCPARVLCGFKEPPLTCVVMWCEPIAHPSNIDTPLDS 238
Query: 116 FAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NKGQ 149
F D +F Y + V+ +G S ++ KGQ
Sbjct: 239 KTFLSRHSMDMKFTYCDDRVTELMGYSPEDLLGRSAYDFYHALDSDNVTKSHQNLCTKGQ 298
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
++ YR++ KNGGY WV++ TV+ +S+N+ Q I+CVNYV+S E ++ I Q E
Sbjct: 299 AVSGQYRMLAKNGGYVWVETQGTVIYNSRNSQPQCIVCVNYVLSDVEEKSMIFSMDQTES 358
Query: 210 YIQQRGVKR 218
+ + + R
Sbjct: 359 LFKPQHLNR 367
>gi|326673039|ref|XP_001337610.2| PREDICTED: hypoxia-inducible factor 1-alpha [Danio rerio]
Length = 730
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 96/261 (36%), Gaps = 105/261 (40%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+TG SVF++ H DH EL E L H
Sbjct: 203 QIELTGHSVFEFTHPCDHEELREMLA------HRFG------------------------ 232
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------DG------- 115
LS S + +RSF +RMK TLT RG + KS+ ++ L DG
Sbjct: 233 ---LSKKSKDQNTNRSFLLRMKCTLTSRGRTVNVKSASWKVLRCSGRIHTADGVEKEVCE 289
Query: 116 ------------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVI 145
F D RF Y E ++ LG V+
Sbjct: 290 EKNTCSTYLVLICESIPHPANIEAPLDSRTFLSRHTLDMRFTYCDERITELLGFDPEDVL 349
Query: 146 N------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNAD 181
KGQV T YRL+ K GG+ W ++ ATV+ +SKN+
Sbjct: 350 QHSVYEYYHALDSDHMTKTHHSLFVKGQVCTGQYRLLAKAGGFVWAETQATVIYNSKNSQ 409
Query: 182 EQNIICVNYVISGREYENFIM 202
Q ++CVNY++SG E I+
Sbjct: 410 AQCVVCVNYILSGIEQPKQIL 430
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 56 SEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTL--------TKRGCHFKS 107
S E ++ T+N D +S+M L+ S +R++ L T +
Sbjct: 120 SRELPLPHSVTSNLDKASVMRLALSY----------LRLRKLLNSDVLEKETALDTQWNG 169
Query: 108 SGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S ++LDGF L +DG +Y+SE VS LGL Q ++
Sbjct: 170 SFLKALDGFLLVLSADGDIVYLSENVSKCLGLPQIEL 206
>gi|87204423|gb|ABD32159.1| hypoxia-inducible factor 2 alpha [Micropogonias undulatus]
Length = 847
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGS-ANSEEGSGMNTGTANPD 70
+ QV++TG S+FD+ H DH E+ E L L + G G G ++E M +
Sbjct: 126 LTQVDLTGHSIFDFTHPCDHEEIRENLSLK-TAGTGFGKKGKELSTERDFFMRMKCTVTN 184
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG-CHFKSSGYR-----------------S 112
++L S+S +K + ++M + RG C FK
Sbjct: 185 RGRTVNLKSAS-WKVLHCTGQLKMYDSCPPRGLCGFKEPPLTCAVLMCEPIPHPSNIDTP 243
Query: 113 LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------N 146
+D F D +F Y E V+ +G + ++
Sbjct: 244 MDSKTFLSRHSMDMKFTYCDERVTELMGYTPEDLLGRSIYDFYHALDSDSVTKSHHNLCT 303
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQ ++ YR++ KNGG+ WV++ TV+ +S+N+ Q I+C+NYV+S E ++ I Q
Sbjct: 304 KGQAVSGQYRMLAKNGGFVWVETQGTVIYNSRNSQPQCIVCINYVLSDIEEKSMIFSLEQ 363
Query: 207 LEDYIQQR 214
E + R
Sbjct: 364 TESLFKPR 371
>gi|19716307|gb|AAL95711.1|AF402782_1 hypoxia-inducible factor 2 alpha [Fundulus heteroclitus]
Length = 873
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 44/250 (17%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L S G ++E M +
Sbjct: 126 LTQVELTGHSIFDFTHPCDHEEIRENLSLK-SAGSFRKKGKDVSTERDFFMRMKCTVTNR 184
Query: 72 SSLMSLSSSS-----------SYKGCD-RSFCIRMKSTLTK-----RGCHFKSSGYRSLD 114
++L S+S Y GC R C + LT S+ LD
Sbjct: 185 GRTVNLKSASWKVLHCTGHLKMYDGCPSRVLCGYKEPPLTCAVLMCEPIQHPSNIEAPLD 244
Query: 115 GFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NKG 148
F D +F Y + V+ +G S ++ KG
Sbjct: 245 SRTFLSRHNMDMKFTYCDDKVTELIGYSPEDLMGRSIYEFYHALDSDSVTKSHHNLCTKG 304
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
Q ++ YR++ KNGGY WV++ TV+ +S+N+ Q I+C+NYV+S E ++ I Q E
Sbjct: 305 QAVSGQYRMLAKNGGYVWVETQGTVIYNSRNSQPQCIVCINYVLSDVEEKSVIFSLEQTE 364
Query: 209 DYIQQRGVKR 218
+ + R
Sbjct: 365 ALFKTPHMSR 374
>gi|308197282|gb|ADO17753.1| single-minded protein [Parhyale hawaiensis]
Length = 597
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 99/264 (37%), Gaps = 95/264 (35%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L L H P ++
Sbjct: 97 QVELTGNSIYEYIHPADHDEMLSVLSLPPHYQHLARHPQHYARQD--------------- 141
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKS--------SGYRSL------------ 113
+ +R+F IRMK L KR + SGY +
Sbjct: 142 ----------EEAERTFLIRMKCVLAKRNAGLTTGGYKVIHCSGYLKIKHYTMDMAPYDS 191
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLG--------- 138
+ F F D R +++ V+ G
Sbjct: 192 CYQNVGLVAVGHSLPPSAITEIKMHSNMFMFRASLDLRLIFLDARVTDLTGYQPQDLIEK 251
Query: 139 -LSQW--------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
L Q+ ++ KGQV + YYR + +NGG+ WVQSCAT+V +S+++
Sbjct: 252 TLYQYVHGCDLMHVRGAHTMLLLKGQVTSKYYRFLTQNGGWVWVQSCATIVHNSRSSGPH 311
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
++ VNYV+S E N + QL
Sbjct: 312 CVVAVNYVLSDIEVRNHFLSWEQL 335
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF + + DG+ +YISET S++LGLSQ ++
Sbjct: 67 QTLDGFIYVVAPDGKIMYISETASVHLGLSQVEL 100
>gi|407316774|gb|AFU07569.1| hypoxia-inducible factor 2 alpha subunit [Schizothorax prenanti]
Length = 833
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 108/280 (38%), Gaps = 106/280 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G ++G ++T
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKAGMG-----------KKGKELST------- 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY-----------------RS 112
+R F +RMK T+T RG + KS+ + R
Sbjct: 163 ---------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLKVYNGCPARV 207
Query: 113 LDGFA---------------------FALGS---------DGRFLYISETVSIYLGLSQW 142
L GF L S D +F Y + V+ +G S
Sbjct: 208 LCGFKEPPLACVVLWCEPIAHPSNIDTPLDSKTFLSRHSMDMKFTYCDDRVTELMGYSPE 267
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++ KGQ ++ YR++ KNGGY WV++ TV+ +S+
Sbjct: 268 DLLGRSAYEFYHALDSDNVTKSHQNLCTKGQAVSGQYRMLAKNGGYVWVETQGTVIYNSR 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKR 218
N+ Q I+CVNYV+S E ++ I Q E + + + R
Sbjct: 328 NSQPQCIVCVNYVLSDVEEKSMIFSMDQTESLFKAQHLNR 367
>gi|288887160|gb|ADC55888.1| hypoxia inducible factor-1alpha [Chaenocephalus aceratus]
Length = 530
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 104/271 (38%), Gaps = 107/271 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+IH D EL E L + GS ++E NT
Sbjct: 74 LAQFDLTGYSVFDFIHPCDQEELREML---------VHKTGSKKTKEP---NTA------ 115
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY---------RSLDG----- 115
RSF +RMK TLT RG + KS+ + R DG
Sbjct: 116 ----------------RSFFLRMKCTLTSRGRTVNVKSAAWKVLHCSGHVRVYDGCTEET 159
Query: 116 ---------------------------------FAFALGSDGRFLYISETVSIYLGLSQW 142
F D +F Y E ++ +G
Sbjct: 160 PNGHKEPPVPYLVLICDPIQHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPE 219
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 220 DLLNRSVYDYYHAMDSDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 279
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLED 209
N+ Q I+CVN+V+SG + E ++ Q+ED
Sbjct: 280 NSQPQCIVCVNFVLSGIQEEKLVLSLEQMED 310
>gi|166343757|gb|ABY86629.1| hypoxia-inducible factor 1 alpha [Rana temporaria]
Length = 806
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 102/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH EL E L + S++G T
Sbjct: 119 LTQFELTGHSVFDFTHPCDHEELREMLTFR-----------NGPSKKGKEQIT------- 160
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------DG----- 115
+RSF +RMK TLT RG + KS+ ++ L DG
Sbjct: 161 ---------------ERSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHMRVYDGCNSQN 205
Query: 116 ------------------------FAFALGS---------DGRFLYISETV--------- 133
F L S D +F Y E V
Sbjct: 206 HCGYKKPPMTCMVLICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELAGYEPD 265
Query: 134 -----SIY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S+Y L + + KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 266 ELLGQSVYDYYHALDSDHLTKAHHDMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNTK 325
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+S + I+ Q E
Sbjct: 326 NSQPQCIVCVNYVLSDIVEKELILSLGQTE 355
>gi|11415005|gb|AAG35181.1|AF168769_1 basic-helix-loop-helix-PAS protein [Mus musculus]
Length = 140
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVS 72
QVE+TGSSVFDY+H DH E+AEQLG+ L G GL S G+ ++ + ++ + P+
Sbjct: 51 QVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPV 110
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRG 102
S S ++ +RSF IRMKSTLTKRG
Sbjct: 111 ETTSPSLLTTDNTLERSFFIRMKSTLTKRG 140
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 103 CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H +S +SLDG FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 13 AHLESHILQSLDGLVFALNQEGKFLYISETVSIYLGLSQVEL 54
>gi|288887158|gb|ADC55887.1| hypoxia inducible factor-1alpha [Notothenia coriiceps]
Length = 658
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 104/271 (38%), Gaps = 107/271 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+IH D EL E L + GS ++E NT
Sbjct: 122 LAQFDLTGYSVFDFIHPCDQEELREML---------VHKTGSKKTKEP---NTA------ 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY---------RSLDG----- 115
RSF +RMK TLT RG + KS+ + R DG
Sbjct: 164 ----------------RSFFLRMKCTLTSRGRTVNVKSAAWKVLHCSGHVRVYDGCTEET 207
Query: 116 ---------------------------------FAFALGSDGRFLYISETVSIYLGLSQW 142
F D +F Y E ++ +G
Sbjct: 208 PNGHKEPTVPYLVLICDPIQHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPD 267
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 268 DLLNRSVYEYYHAMDSDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLED 209
N+ Q I+C+N+V+SG + E ++ Q+ED
Sbjct: 328 NSQPQCIVCLNFVLSGIQDEKLVLSLEQMED 358
>gi|395526121|ref|XP_003775338.1| PREDICTED: LOW QUALITY PROTEIN: neuronal PAS domain-containing
protein 1-like [Sarcophilus harrisii]
Length = 568
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 70/146 (47%), Gaps = 38/146 (26%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
+LFEQH G HILQ VE+TGSSVFDY+H DH
Sbjct: 73 DLFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDH 132
Query: 32 TELAEQLGL-GLSQGHGLASPGSANSEEGSGMNTGTANPDVS---SLMSLSSSSSYKGCD 87
+E+ EQLGL S PG E T A ++ +L ++ S +
Sbjct: 133 SEVLEQLGLRATSPDLVXEGPG----REAHCPETRXAPKPLALELALPVITPRSQPGSLE 188
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL 113
RSF +RMKSTLTKRG H K+SGY+ +
Sbjct: 189 RSFFVRMKSTLTKRGLHVKASGYKVI 214
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H +SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 78 HLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 118
>gi|296240119|gb|ADH01741.1| hypoxia-inducible factor 1 alpha [Callionymus valenciennei]
Length = 703
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 101/273 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q+++ G SVF++ H D EL E L A +++ +N+
Sbjct: 123 LAQLDLAGHSVFNFTHPCDQEELRETLQ------------HRAGTKKSRDVNSA------ 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DG-- 115
RSF +RMK TLT RG + KS+ ++ L DG
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHLYDSEPSDGSV 208
Query: 116 ------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVIN----- 146
F D +F Y E ++ +G +++N
Sbjct: 209 PYLVLICDPIPHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPDELLNRSVYE 268
Query: 147 -------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
KGQV+T YR++ K GG+ WV++ ATV+ ++KN+ Q ++C
Sbjct: 269 YYHALDSNHLTKTHHNLFAKGQVITGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVC 328
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREE 220
VN+V+SG + E I+ Q +D + VK E+
Sbjct: 329 VNFVLSGVQEEQTILSLEQTQDV---KSVKEEK 358
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
HF SS ++L+GF L DG +Y+S+ V+ LGL+Q +
Sbjct: 88 HFNSSYLKALEGFLMVLSEDGDMIYVSDNVNKCLGLAQLDL 128
>gi|334328713|ref|XP_001373287.2| PREDICTED: neuronal PAS domain-containing protein 1 [Monodelphis
domestica]
Length = 611
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 73/145 (50%), Gaps = 34/145 (23%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
+LFEQH G HILQ VE+TGSSVFDY+H DH
Sbjct: 126 DLFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDH 185
Query: 32 TELAEQLGL---GLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDR 88
+E+ EQLGL G L P S++S + N+ ++ + L+ + DR
Sbjct: 186 SEVLEQLGLKAPPPGPGAPLYGPSSSSSSSSASSNSEAPETELGPPV-LTPRNQPGLLDR 244
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSL 113
SF IRMKSTLTKRG H K+SGY+ +
Sbjct: 245 SFFIRMKSTLTKRGLHLKASGYKVI 269
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S +++KGQV+T YYR + + GG+ W+QS ATV S K+ E++++ V+Y++S E +
Sbjct: 360 SHLDLLDKGQVVTGYYRWLQRAGGFVWLQSVATVAISGKSPGERHVVWVSYILSQVESSH 419
Query: 200 FIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADRE 236
++D QL R +E+ S+ +PE P A E
Sbjct: 420 VVLDAFQLP-----RTGPQEDLSDPEPEIKEPKAQVE 451
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 138 QSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 171
>gi|294961106|gb|ADF50044.1| hypoxia-inducible factor 2 alpha [Megalobrama amblycephala]
Length = 835
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 48/250 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGS-ANSEEGSGM-------N 63
+ QVE+TG S+FD+ H DH E+ E L L G+ G N+E M N
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKA----GMGKKGKELNTERDFFMRMKCTVTN 176
Query: 64 TG-TANPDVSSLMSLSSSSSYKGCD----RSFCIRMKSTLTKRGCHFKSSGYRS-----L 113
G T N +S L + K C+ R C + LT + + S L
Sbjct: 177 RGRTVNLKSASWKVLHCTGHLKVCNGCPARVLCGYKEPPLTCVVMMCEPIPHPSNIDTPL 236
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D AF D + Y + V+ +G S ++ K
Sbjct: 237 DSKAFLSRHSMDMKSTYCDDRVTELMGYSPEDLLGRSAYDFYHALDSDNVTKSHQNLCTK 296
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQ ++ YR++ KNGGY WV++ TV+ +S+N+ Q I+CVNYV+S E + I Q
Sbjct: 297 GQAVSGQYRMLAKNGGYVWVETQGTVIYNSRNSQPQCIVCVNYVLSDVEERSMIFSMDQT 356
Query: 208 EDYIQQRGVK 217
E + +K
Sbjct: 357 ESLFKPHNLK 366
>gi|102621855|gb|ABF71072.1| hypoxia inducible factor 1 alpha [Xenopus laevis]
Length = 800
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 95/264 (35%), Gaps = 106/264 (40%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH EL E L +G A G E
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELREMLTFR----NGPAKKGKEQITE------------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----------------------------- 102
RSF +RMK TLT RG
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHMRVYDNANNQK 208
Query: 103 -CHFKSSGYRSL----------DGFAFALGS---------DGRFLYISETV--------- 133
C +K + + F L S D +F Y E V
Sbjct: 209 HCGYKKPPMKCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELVGYDPD 268
Query: 134 -----SIY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S+Y L + + KGQV T YR++ K GGY WV++ ATV+ +SK
Sbjct: 269 ELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSK 328
Query: 179 NADEQNIICVNYVISGREYENFIM 202
N+ Q I+CVNYV+S ++ I+
Sbjct: 329 NSQPQCIVCVNYVLSEVVEKDLIL 352
>gi|288887164|gb|ADC55890.1| hypoxia inducible factor-1alpha [Pseudochaenichthys georgianus]
Length = 686
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 103/271 (38%), Gaps = 107/271 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+IH D EL E L + GS ++E NT
Sbjct: 123 LAQFDLTGYSVFDFIHPCDQEELREML---------VHKTGSKKNKEP---NTA------ 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY---------RSLDG----- 115
RSF +RMK TLT RG + KS+ + R DG
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNVKSAAWKVLHCSGHVRVYDGCTEET 208
Query: 116 ---------------------------------FAFALGSDGRFLYISETVSIYLGLSQW 142
F D +F Y E ++ +G
Sbjct: 209 PNGHKEPPVPYLVLXCDPIQHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELMGYDPE 268
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 269 DLLNRSVYDYYHAMDSDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLED 209
N+ Q I+CVN+V+S + E ++ Q+ED
Sbjct: 329 NSQPQCIVCVNFVLSDIQEEKLVLSLEQMED 359
>gi|340708761|ref|XP_003392990.1| PREDICTED: single-minded homolog 1-A-like [Bombus terrestris]
Length = 738
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 98/270 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG+S+F+YI+Q DH E+ L L S + +G AN
Sbjct: 154 MAQVELTGNSIFEYIYQNDHAEMLSVLNLPQSPA------------DLAGFTFPPAN--- 198
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR-------------------- 111
S +R F +RMK L KR + GY+
Sbjct: 199 --------SRGEIELERVFILRMKCNLAKRCAGLVTEGYKVIHCSGYLRCIVEGPVGSEY 250
Query: 112 -------------------SLDG------------FAFALGSDGRFLYISETVSIYLGLS 140
SL G F F D + +++ VS G
Sbjct: 251 EDGAGRHCIRKVGLLAVGHSLPGRCLTEVKLYQNMFMFRASLDLKLIFVDANVSQLTGYD 310
Query: 141 QWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCS 176
+I K GQV+T YYR + K+GG+ W+QS T+V +
Sbjct: 311 PPDLIEKTLYHYVHGCDMMQLRHAHGTLLYKGQVITKYYRFLTKSGGWVWMQSYVTIVHN 370
Query: 177 SKNADEQNIICVNYVISGREYENFIMDCCQ 206
S+++ I+ VNYV++ E + +++C Q
Sbjct: 371 SRSSRPHCIVSVNYVLTKPENTDLLLNCEQ 400
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F L DG+ +YISET S++LG++Q ++
Sbjct: 126 QALDGFVFVLAPDGKIMYISETASVHLGMAQVEL 159
>gi|190337520|gb|AAI63440.1| Epas1 protein [Danio rerio]
Length = 834
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 102/245 (41%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEG--------SGMN 63
+ QVE+TG S+FD+ H DH E+ E L L G+ G S E + N
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKA----GIGKKGKELSTERDFFMRMKCTVTN 176
Query: 64 TG-TANPDVSSLMSLSSSSSYKGCD----RSFCIRMKSTLTKRGCHFKSSGYRS-----L 113
G T N +S L + K C+ R C + LT + + S L
Sbjct: 177 RGRTVNLKSASWKVLHCTGHLKVCNGCPARVLCGFKEPPLTCVVMMCEPIVHPSNIDTPL 236
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVINK 147
D F D ++ Y E V+ +G S + K
Sbjct: 237 DSKTFLSRHSMDMKYTYCDERVTELMGYNPEDLLGRSAYEFYHALDAENVTKSHQNLCTK 296
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQ ++ YR++ KNGGY WV++ TV+ +S+N+ Q I+CVNYV+S E ++ I Q
Sbjct: 297 GQAVSGQYRMLAKNGGYVWVETRGTVIYNSRNSQPQCIVCVNYVLSDVEEKSLIFSMDQT 356
Query: 208 EDYIQ 212
E +
Sbjct: 357 ESLFK 361
>gi|350427755|ref|XP_003494869.1| PREDICTED: single-minded homolog 2-like [Bombus impatiens]
Length = 738
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 98/270 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG+S+F+YI+Q DH E+ L L S + +G AN
Sbjct: 154 MAQVELTGNSIFEYIYQNDHAEMLSVLNLPQSPA------------DLAGFTFPPAN--- 198
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR-------------------- 111
S +R F +RMK L KR + GY+
Sbjct: 199 --------SRGEIELERVFILRMKCNLAKRCAGLVTEGYKVIHCSGYLRCIVEGPVGSEY 250
Query: 112 -------------------SLDG------------FAFALGSDGRFLYISETVSIYLGLS 140
SL G F F D + +++ VS G
Sbjct: 251 EDGAGRHCIRKVGLLAVGHSLPGRCLTEVKLYQNMFMFRASLDLKLIFVDANVSQLTGYD 310
Query: 141 QWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCS 176
+I K GQV+T YYR + K+GG+ W+QS T+V +
Sbjct: 311 PPDLIEKTLYHYVHGCDMMQLRHAHGTLLYKGQVITKYYRFLTKSGGWVWMQSYVTIVHN 370
Query: 177 SKNADEQNIICVNYVISGREYENFIMDCCQ 206
S+++ I+ VNYV++ E + +++C Q
Sbjct: 371 SRSSRPHCIVSVNYVLTKPENTDLLLNCEQ 400
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F L DG+ +YISET S++LG++Q ++
Sbjct: 126 QALDGFVFVLAPDGKIMYISETASVHLGMAQVEL 159
>gi|407316764|gb|AFU07564.1| hypoxia-inducible factor 2 alpha subunit [Acipenser sinensis]
Length = 852
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 104/274 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L +G+ G N D+
Sbjct: 119 LTQVELTGHSIFDFTHPCDHDEMRENLSLR------------------NGLGFGKKNKDL 160
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR-----------------S 112
++ +R F +RMK T+T RG + KS+ ++ +
Sbjct: 161 NT-------------ERDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGQVKVYNSCPPHT 207
Query: 113 LDGFA---------------------FALGS---------DGRFLYISETVSIYLGL--- 139
L GF L S D +F Y E V+ +G
Sbjct: 208 LCGFKEPPLTCVVMMCEPIPHPSNIDMPLDSKTFLSRHSMDMKFTYCDERVTELMGYWPE 267
Query: 140 ---------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S + KGQ ++ YR++ K+GGY WV++ TV+ +++
Sbjct: 268 ELLGRSVYEFYHALDSDRMTKSHQNLCTKGQAVSSQYRMLAKHGGYVWVETQGTVIYNTR 327
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVN+V+S E + I Q E ++
Sbjct: 328 NSHPQCIVCVNFVLSDIEENSVIFSLDQTESLLK 361
>gi|407316760|gb|AFU07562.1| hypoxia-inducible factor 2 alpha subunit [Polypterus senegalus]
Length = 848
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 109/279 (39%), Gaps = 106/279 (37%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPG-SANSEEGSGMNTGTANPD 70
+ QVE+TG S+FD+ H DH E+ E LS HG PG S + E S +
Sbjct: 119 LTQVELTGHSIFDFTHPCDHEEIRE----NLSPKHG---PGFSKKNREASSV-------- 163
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR----------------- 111
R F +RMK T+T RG + KS+ ++
Sbjct: 164 -----------------RDFFMRMKCTVTNRGRTVNLKSASWKVLHCTGHLKMYNSHHPH 206
Query: 112 SLDGFA---------------------FALGS---------DGRFLYISETVSIYLGLSQ 141
+L GF L S D +F Y E ++ +G S
Sbjct: 207 TLCGFKEPPLNCVIMICEPIPHPINIDIPLDSKTYLSRHSMDMKFTYCDERITELMGYSP 266
Query: 142 WQVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177
+++ KGQ ++ YR++ K+GGY W+++ TV+ +S
Sbjct: 267 EELLGRSIYDFYHALDSDSLTKSHHNLCTKGQAVSGQYRMLAKHGGYVWIETQGTVIYNS 326
Query: 178 KNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGV 216
+N+ Q I+C+NYV+S E ++ I Q E + +
Sbjct: 327 RNSQPQCIVCINYVLSEIEEDSIIFSMDQTESLFKPHVI 365
>gi|410900798|ref|XP_003963883.1| PREDICTED: endothelial PAS domain-containing protein 1-like
[Takifugu rubripes]
Length = 864
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 102/249 (40%), Gaps = 49/249 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QV++TG S+FD+ H DH E+ E L L + G+ G S E
Sbjct: 120 LTQVDLTGHSIFDFTHPCDHEEIRENLSLK-TTGNAYDKKGKELSSERDFFMRMKCTVTT 178
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y C R C + LT + + S
Sbjct: 179 RGRTVNLKSAGWKV--LHCTGQLKMYNSCPPRGLCSFREPPLTCAVLMCEPIPHPSNIDT 236
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVI 145
+D F D +F Y E V+ +G S +
Sbjct: 237 PMDTRTFLSRHSMDMKFTYCDERVTELMGYTPEDLLGRSVYDFYHALDSDKVTKSHQNLC 296
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQ +T YR++ KNGG+ WV++ TV+ +S+N+ Q I+C+NYV+S E ++ I
Sbjct: 297 TKGQAVTAQYRMLAKNGGFIWVETQGTVIYNSRNSQPQCIVCINYVLSDIEEKSTIFSLE 356
Query: 206 QLEDYIQQR 214
Q+E + R
Sbjct: 357 QIEALFKPR 365
>gi|430024072|gb|AGA35555.1| hypoxia inducible factor alpha 1, partial [Etroplus suratensis]
Length = 595
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 106/282 (37%), Gaps = 110/282 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+ H D EL E L + GS ++E +
Sbjct: 6 LAQFDLTGHSVFDFTHPCDQEELREML---------IHRTGSKKTKEPNA---------- 46
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
+RSF +RMK TLT RG + KS+ ++
Sbjct: 47 ---------------ERSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVRVYDSQTDES 91
Query: 112 ---------------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
LD F D +F Y E ++ LG
Sbjct: 92 ISGQKEPPVPYLVLICDPIPHPSNIEVPLDTKTFLSRHTMDMKFTYCDERITELLGYDPE 151
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 152 DLLNRSVYEYYHALDSDHLTKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 211
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREE 220
N+ Q ++CVN+V+SG + E I+ LE + VK E+
Sbjct: 212 NSQPQCVVCVNFVLSGIQGEKVIL---SLEQTTDMKPVKEEQ 250
>gi|147900690|ref|NP_001086426.1| hypoxia-inducible factor 1 alpha [Xenopus laevis]
gi|116487674|gb|AAI26006.1| HIF-1a protein [Xenopus laevis]
Length = 800
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 95/268 (35%), Gaps = 106/268 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E TG SVFD+ H DH EL E L +G A G E
Sbjct: 122 LTQFEFTGHSVFDFTHPCDHEELREMLTFR----NGPAKKGKEQITE------------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----------------------------- 102
RSF +RMK TLT RG
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHMRVYDNANNQK 208
Query: 103 -CHFKSSGYRSL----------DGFAFALGS---------DGRFLYISETV--------- 133
C +K + + F L S D +F Y E V
Sbjct: 209 HCGYKKPPMKCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELVGYDPD 268
Query: 134 -----SIY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S+Y L + + KGQV T YR++ K GGY WV++ ATV+ +SK
Sbjct: 269 ELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQ 206
N+ Q I+CVNYV+S ++ I+ Q
Sbjct: 329 NSQPQCIVCVNYVLSEVVEKDLILSLGQ 356
>gi|383856713|ref|XP_003703852.1| PREDICTED: uncharacterized protein LOC100878780 [Megachile
rotundata]
Length = 749
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 103/269 (38%), Gaps = 97/269 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QV++TG+S+F+YI+ DH E+ L L S LA G P
Sbjct: 177 MAQVDLTGNSIFEYIYDHDHNEMQSVLNLPQSPA-DLA---------------GVTFPPP 220
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR-------------------- 111
+S + +R F +RMK L KR + GY+
Sbjct: 221 NSRGEIE-------LERIFILRMKCNLAKRNAGLVTEGYKVIHCSGYLRCIVEGAVGSEY 273
Query: 112 ------------------SLDG------------FAFALGSDGRFLYISETVSIYLGLS- 140
SL G F F D + +++ +VS G +
Sbjct: 274 EDGSGRCIRNIGLLAVGHSLPGRSLTEIKLYQNMFMFRASLDMKLIFVDGSVSQLTGYNP 333
Query: 141 ----------------QWQV-------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177
WQ+ + KGQV+T YYR + K GG+ W+QS T+V +S
Sbjct: 334 TDLIEKTLYHYVHGCDMWQLCHAHYLLLRKGQVITGYYRFLAKCGGWVWMQSYVTIVHNS 393
Query: 178 KNADEQNIICVNYVISGREYENFIMDCCQ 206
+++ I+ VNYV+S E+ +++C Q
Sbjct: 394 RSSRPHCIVSVNYVLSKPEHTELVLNCEQ 422
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++L+GF F L DG+ +YISET S++LG++Q
Sbjct: 149 QALEGFVFVLAPDGKIIYISETASVHLGMAQ 179
>gi|189241710|ref|XP_967930.2| PREDICTED: similar to Single minded [Tribolium castaneum]
Length = 521
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 117/300 (39%), Gaps = 74/300 (24%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGM---------NT 64
QVE+TG+S+++YIH ADH E+ L + LAS SE + N
Sbjct: 117 QVELTGNSIYEYIHPADHDEMTAVLSPTIPP---LASQQDYESERAFFLRMKCVLAKRNA 173
Query: 65 GTANPDVSSL---------MSLSSSSSYKGCDRSFCIRM------KSTLTKRGCHFKSSG 109
G N + +SSS Y+GC ++ + S +T+ H
Sbjct: 174 GLTNGGYKVIHCSGYLKVKQFTASSSPYEGCYQNMGLVAVGHSLPPSAITEIKLH----- 228
Query: 110 YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK---------------------- 147
+ F F D + +++ V+ G +I K
Sbjct: 229 ---ANMFMFRASLDLKLIFLDARVAQLTGYEPQDLIEKTLYHYIHGSDIMPMRFAHHQLL 285
Query: 148 --GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
GQV T YYR ++K GG+ W+QS AT+V +S+++ I+ VNYV+S E ++ +++
Sbjct: 286 CKGQVTTKYYRFLSKGGGWVWMQSYATIVHNSRSSRPHCIVSVNYVLSDLEGKDLLLNSA 345
Query: 206 QLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGDNS 265
Q G REE + + P R + PP I + D S
Sbjct: 346 Q--------GSLREEVPTSPKSSPKPLPKYPPSRATPQ-------QPPIISPSIPDDDFS 390
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|407316744|gb|AFU07554.1| hypoxia-inducible factor 1 alpha subunit [Polypterus senegalus]
Length = 801
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 104/243 (42%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGS-ANSEE------------ 58
+ Q E+TG SVFD+ H DH EL E L+ G A G N+E
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELRE----VLTHRAGAAKKGKEVNTERSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L L +Y+ C+ ++ C K +T + + S
Sbjct: 178 RGRTVNIKSATWKV--LHCLGHIRAYESCEEQNDCGYKKPLVTSLVVICEPIPHPSNIEV 235
Query: 113 -LDGFAFAL--GSDGRFLYISETV--------------SIY----------LGLSQWQVI 145
LD F + +F Y E + S+Y L + +
Sbjct: 236 PLDSKTFLSRHSLEMKFSYCDERITELMGYQPEDLLGRSVYEYYHAMDSDHLTKTHHNLF 295
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQ T YR++ KNGGY WV++ ATV+ +SKN+ Q I+CVNYV+SG ++ I
Sbjct: 296 AKGQATTGQYRMLAKNGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSGVVEKDLIFSLS 355
Query: 206 QLE 208
Q E
Sbjct: 356 QTE 358
>gi|198420580|ref|XP_002119436.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 641
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 97/267 (36%), Gaps = 105/267 (39%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH DH E+ L H P+ +
Sbjct: 117 QVELTGNSIYEYIHPGDHDEMKAVLTAHQPYNHLC--------------------PEYEA 156
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----------------DG-- 115
+R F RMK L KR S GY+ + DG
Sbjct: 157 -------------ERCFFTRMKCVLAKRNAGLTSGGYKVIHCTGYIKIRYFMFDQYDGSG 203
Query: 116 ------------------------------FAFALGSDGRFLYISETVSIYLGL------ 139
F F D + +++ + VS LG
Sbjct: 204 GGCYHNVGVLALGQSLPATSLTDVKLYSNMFMFRASLDFKLIFMDQQVSSLLGFEPQDLI 263
Query: 140 ------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNAD 181
S +++NKGQV T YYR + ++GG+ WVQS T+V +S+++
Sbjct: 264 EKTLYHYVHAGDLFHLKESHQKLLNKGQVKTKYYRFLTRHGGWVWVQSHVTIVHNSRSSR 323
Query: 182 EQNIICVNYVISGREYENFIMDCCQLE 208
I+ VNYVIS E + +M Q+E
Sbjct: 324 PHCIVSVNYVISDVEKRDIVMSQHQIE 350
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+DGF F LG+DG+ +Y+SETVS +LGLSQ ++
Sbjct: 89 MDGFIFVLGADGKIMYMSETVSGHLGLSQVEL 120
>gi|242005711|ref|XP_002423706.1| single-minded, putative [Pediculus humanus corporis]
gi|212506882|gb|EEB10968.1| single-minded, putative [Pediculus humanus corporis]
Length = 558
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 100/264 (37%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH DH E+ L + P + G
Sbjct: 117 QVELTGNSIYEYIHPHDHDEMISVLTMH--------QPPPQMTHLGQEFE---------- 158
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+R+F +RMK L KR S GY+ +
Sbjct: 159 ------------MERAFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLKVKSLPMDTTSYEG 206
Query: 114 --------------------------DGFAFALGSDGRFLYISETVS------------- 134
+ F F D R +++ VS
Sbjct: 207 CYQNAGLVAVGHSLTPSAITEIKLHTNMFMFRASLDLRLIFLDARVSNLTGYEPQDLIEK 266
Query: 135 -----------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
+++ +S ++ KGQV T Y+R + K+GG+ W+QS AT+V +++++
Sbjct: 267 TLYHYIHGCDMLHMRISHHILLFKGQVTTKYFRFLTKDGGWVWMQSYATIVHNTRSSRPH 326
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV+S E ++ +++ QL
Sbjct: 327 CIVSVNYVLSDLEAKDLVINLAQL 350
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QNLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|194385580|dbj|BAG65167.1| unnamed protein product [Homo sapiens]
Length = 769
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 65 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 106
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 107 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 151
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 152 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 211
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 212 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 271
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 272 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 301
>gi|89886285|ref|NP_001034895.1| endothelial PAS domain-containing protein 1 [Danio rerio]
gi|87242613|gb|ABD33838.1| hypoxia inducible factor 2 alpha [Danio rerio]
Length = 832
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 48/235 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEG--------SGMN 63
+ QVE+TG S+FD+ H DH E+ E L L G+ G S E + N
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKA----GIGKKGKELSTERDFFMRMKCTVTN 176
Query: 64 TG-TANPDVSSLMSLSSSSSYKGCD----RSFCIRMKSTLTKRGCHFKSSGYRS-----L 113
G T N +S L + K C+ R C + LT + + S L
Sbjct: 177 RGRTVNLKSASWKVLHCTGHLKVCNGCPARVLCGFKEPPLTCVVMMCEPIVHPSNIDTPL 236
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVINK 147
D F D ++ Y E V+ +G S + K
Sbjct: 237 DSKTFLSRHSMDMKYTYCDERVTELMGYNPEDLLGRSAYEFYHALDAENVTKSHQNLCTK 296
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIM 202
GQ ++ YR++ KNGGY WV++ TV+ +S+N+ Q I+CVNYV+S E ++ I
Sbjct: 297 GQAVSGQYRMLAKNGGYVWVETRGTVIYNSRNSQPQCIVCVNYVLSDVEEKSLIF 351
>gi|359320071|ref|XP_003639249.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Canis lupus
familiaris]
Length = 823
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|254973565|gb|ACT98611.1| hypoxia inducible factor 1 subunit alpha [Cloning vector
pCMV-HIF-1a-FLAG]
Length = 848
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|380039558|gb|AFD32323.1| hypoxia-inducible factor 1 alpha A, partial [Aspius aspius]
Length = 545
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 104/275 (37%), Gaps = 105/275 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+++TG +VF++ H DH EL E L +GL ++ +T
Sbjct: 34 QIDLTGHTVFEFTHPCDHEELREMLA----HRNGLC-------KKAKEFHT--------- 73
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSLDGFAFALGSDG------- 124
+RSF +RMK TLT RG + KS+ ++ L +DG
Sbjct: 74 -------------NRSFLLRMKCTLTSRGRTVNVKSASWKVLRCSGHIHTADGVVKEKNA 120
Query: 125 -----------------------------------RFLYISETVSIYLGL---------- 139
RF Y E ++ LG
Sbjct: 121 CSTYLVLICESIPHPANIEAPLDSRTFLSRHTLHMRFTYCDERITKLLGFDPVDLLQHSV 180
Query: 140 --------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ ++ KGQV T YRL+ K GG+ W ++ ATV+ +SKN+ Q +
Sbjct: 181 YEYYHALDSGHMTKTHHKLFVKGQVCTGQYRLLAKEGGFVWAETQATVIYNSKNSQPQCV 240
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREE 220
+CVNY++SG E I+ Q +KRE+
Sbjct: 241 VCVNYILSGIEQPKQILSLQQ----TNSTKIKREQ 271
>gi|149517086|ref|XP_001515883.1| PREDICTED: hypoxia-inducible factor 3-alpha-like, partial
[Ornithorhynchus anatinus]
Length = 440
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 79 SSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSLDGFAFALG-SDGRFLYISETVSI 135
++S +RSF +RMKSTLT RG + K++ ++ G G + G+ L +
Sbjct: 2 TASGSLATERSFSLRMKSTLTSRGRTLNLKAATWKVSTGEGPGPGWAAGQTLTFRPPPPL 61
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+ V++KGQ +T YR + +NGGY W Q+ ATV+ + ++I+CV++V+S
Sbjct: 62 HSA-----VLSKGQAVTGQYRFLARNGGYLWTQTQATVISGGRGGQAESIVCVHFVLSRV 116
Query: 196 EYENFIMDCCQ 206
+ ++ Q
Sbjct: 117 DETGMVLSLEQ 127
>gi|328792532|ref|XP_394146.4| PREDICTED: hypothetical protein LOC410669 [Apis mellifera]
Length = 738
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 58/249 (23%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSE-------------- 57
+ QVE+TG+S+F+YI+Q DH E+ L L S LAS SANS
Sbjct: 154 MAQVELTGNSIFEYIYQNDHAEMLSVLNLPQSPA-DLASFTSANSRGEIELERVFILRMK 212
Query: 58 ----------EGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----- 102
G + + ++ S Y+ CIR K L G
Sbjct: 213 CNLAKRCAGLVTEGYKVIHCSGYLRCVVEGPVGSEYEDGAGRHCIR-KVGLLAVGHSLPG 271
Query: 103 -CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK-------------- 147
C + Y+++ F F D + +++ VS G +I K
Sbjct: 272 RCLTEVKLYQNM--FMFRASLDLKLIFVDANVSQLTGYDPPDLIEKTLYHYVHGCDMMQL 329
Query: 148 ----------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
GQV+T YYR + K+GG+ W+QS T+V +S+++ I+ VNYV++ E
Sbjct: 330 RHAHGTLLYKGQVITKYYRFLTKSGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTKPEN 389
Query: 198 ENFIMDCCQ 206
+ +++C Q
Sbjct: 390 TDLLLNCEQ 398
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F L DG+ +YISET S++LG++Q ++
Sbjct: 126 QALDGFVFVLAPDGKIMYISETASVHLGMAQVEL 159
>gi|380011376|ref|XP_003689783.1| PREDICTED: single-minded homolog 1-A-like [Apis florea]
Length = 738
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 58/249 (23%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSE-------------- 57
+ QVE+TG+S+F+YI+Q DH E+ L L S LAS SANS
Sbjct: 151 MAQVELTGNSIFEYIYQNDHAEMLSVLNLPQSPA-DLASFTSANSRGEIELERVFILRMK 209
Query: 58 ----------EGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----- 102
G + + ++ S Y+ CIR K L G
Sbjct: 210 CNLAKRCAGLVTEGYKVIHCSGYLRCVVEGPVGSEYEDGAGRHCIR-KVGLLAVGHSLPG 268
Query: 103 -CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK-------------- 147
C + Y+++ F F D + +++ VS G +I K
Sbjct: 269 RCLTEVKLYQNM--FMFRASLDLKLIFVDANVSQLTGYDPPDLIEKTLYHYVHGCDMMQL 326
Query: 148 ----------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREY 197
GQV+T YYR + K+GG+ W+QS T+V +S+++ I+ VNYV++ E
Sbjct: 327 RHAHGTLLYKGQVITKYYRFLTKSGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTKPEN 386
Query: 198 ENFIMDCCQ 206
+ +++C Q
Sbjct: 387 TDLLLNCEQ 395
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F L DG+ +YISET S++LG++Q ++
Sbjct: 123 QALDGFVFVLAPDGKIMYISETASVHLGMAQVEL 156
>gi|351705699|gb|EHB08618.1| Single-minded-like protein 1 [Heterocephalus glaber]
Length = 754
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 90/252 (35%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L TA+ S
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVL---------------------------TAHQPYHS 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------SLDG------------ 115
Y+ +RSF +RMK L KR GY+ DG
Sbjct: 149 HFV----QEYE-IERSFFLRMKCVLAKRNAGLTCGGYKVCLDMSPFDGCYQTVGLVAVGH 203
Query: 116 ----------------FAFALGSDGRFLYISETVS------------------------I 135
F F D + +++ V+
Sbjct: 204 SLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTF 263
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 264 HLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDT 323
Query: 196 EYENFIMDCCQL 207
EY+ + Q+
Sbjct: 324 EYKGLQLSLDQI 335
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|3790535|gb|AAC68568.1| hypoxia-inducible factor 1 alpha subunit [Homo sapiens]
Length = 826
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|340545531|ref|NP_001230013.1| hypoxia-inducible factor 1-alpha isoform 3 [Homo sapiens]
gi|225354050|gb|ACN88547.1| hypoxia-inducible factor 1 alpha isoform I.3 [Homo sapiens]
Length = 850
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 146 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 187
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 188 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 232
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 233 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 292
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 293 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 352
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 353 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 382
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 118 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 151
>gi|114653405|ref|XP_001168972.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 10 [Pan
troglodytes]
gi|410226740|gb|JAA10589.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
gi|410297974|gb|JAA27587.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
gi|410344149|gb|JAA40616.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
Length = 826
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|417404834|gb|JAA49153.1| Putative transcriptional regulator sim1 [Desmodus rotundus]
Length = 823
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNGNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|189065475|dbj|BAG35314.1| unnamed protein product [Homo sapiens]
Length = 826
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|117935055|ref|NP_776764.2| hypoxia-inducible factor 1-alpha [Bos taurus]
gi|47933909|gb|AAT39520.1| hypoxia inducible factor-1a [Bos grunniens]
gi|117306677|gb|AAI26623.1| Hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Bos taurus]
gi|296482937|tpg|DAA25052.1| TPA: hypoxia-inducible factor 1-alpha [Bos taurus]
Length = 823
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|397523307|ref|XP_003831677.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 3 [Pan
paniscus]
Length = 850
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 146 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 187
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 188 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 232
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 233 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 292
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 293 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 352
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 353 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 382
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 118 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 151
>gi|281349362|gb|EFB24946.1| hypothetical protein PANDA_000857 [Ailuropoda melanoleuca]
Length = 812
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 112 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 153
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 154 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 198
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 199 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 258
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 259 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 318
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 319 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 348
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 84 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 117
>gi|195108655|ref|XP_001998908.1| GI23369 [Drosophila mojavensis]
gi|193915502|gb|EDW14369.1| GI23369 [Drosophila mojavensis]
Length = 779
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPSAYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVIKREP 402
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|32469795|sp|Q9XTA5.1|HIF1A_BOVIN RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|5019612|dbj|BAA78675.1| hypoxia-inducible factor-1 alpha [Bos taurus]
Length = 823
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|111143456|gb|ABH06559.1| hypoxia inducible factor isoform 1b [Bos grunniens]
Length = 823
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|440910232|gb|ELR60049.1| Hypoxia-inducible factor 1-alpha, partial [Bos grunniens mutus]
Length = 814
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 113 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 154
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 155 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 199
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 200 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 259
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 260 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 319
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 320 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 349
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 85 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 118
>gi|390350866|ref|XP_783102.3| PREDICTED: endothelial PAS domain-containing protein 1-like
[Strongylocentrotus purpuratus]
Length = 933
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 50/243 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLASPGSANSEEGSGMNTGTA 67
I QV++ G S++DY H DH E+ EQL GL L+ L S S G M
Sbjct: 128 INQVDLMGQSIYDYAHPCDHDEIREQLSDRPGLTLTT---LPSATSKRKHHGFLMRVKCT 184
Query: 68 NPDVSSLMSLSSSSSYKGC-----------DRSFC-IRMKST----LTKRGCHFKSSGYR 111
+++L ++S YK D S RM T L S+
Sbjct: 185 LTPKGKIVNLKAAS-YKAVHCQGHMKLALSDTSVLGYRMPPTPCLVLIASPIPHPSNIEV 243
Query: 112 SLDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVIN----------------------- 146
LD AF D +F Y E + +G +++
Sbjct: 244 PLDCSAFLTRHSMDMKFTYCDERIEQLMGYIPNELVGQSFYVYYHALDGQLIDKSYKDLY 303
Query: 147 -KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQ T YR + KNGGY W+++ AT++ ++K Q I+CVNY ISG E+ + ++
Sbjct: 304 AKGQTSTGRYRFLAKNGGYMWLETQATIIYNNKTNKPQCIVCVNYAISGVEHGDRVLSVG 363
Query: 206 QLE 208
Q E
Sbjct: 364 QQE 366
>gi|116248098|sp|Q0PGG7.1|HIF1A_BOSMU RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|111143453|gb|ABH06558.1| hypoxia inducible factor isoform 1a [Bos grunniens]
Length = 823
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKKGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|195395110|ref|XP_002056179.1| single-minded [Drosophila virilis]
gi|194142888|gb|EDW59291.1| single-minded [Drosophila virilis]
Length = 761
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPAAYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|410962414|ref|XP_003987765.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Felis catus]
Length = 824
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|301754491|ref|XP_002913080.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Ailuropoda
melanoleuca]
Length = 822
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|62632235|gb|AAX89137.1| hypoxia inducible factor-1 alpha [Pantholops hodgsonii]
Length = 823
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|343055703|gb|AEL79603.1| hypoxia-inducible factor 1 alpha subunit [Pantholops hodgsonii]
Length = 823
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|241706697|ref|XP_002413286.1| single-minded, putative [Ixodes scapularis]
gi|215507100|gb|EEC16594.1| single-minded, putative [Ixodes scapularis]
Length = 623
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 90/250 (36%), Gaps = 101/250 (40%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L L H P A E
Sbjct: 15 QVELTGNSIYEYIHPADHDEMTAVLTLQSVLPH----PHGAQELE--------------- 55
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------DG 115
DRSF +RMK L KR + GY+ + DG
Sbjct: 56 ------------VDRSFFVRMKCVLAKRNAGLTTGGYKVIHCSGYVKVKHYSMDVAPYDG 103
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVIN- 146
F F D + +++ V+ G +I
Sbjct: 104 CYQNLGLVAVGHSLPPSAITEIKMYANMFMFRASLDLKLIFLDARVAPLTGYEPQDLIEK 163
Query: 147 -----------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
KGQV T YYR M+K GG+ W+QS AT+V +S+++
Sbjct: 164 TLYHYIHGYDCLHMRYSHHTLLLKGQVTTKYYRFMSKEGGWVWMQSYATIVHNSRSSRPH 223
Query: 184 NIICVNYVIS 193
I+ VNYV+S
Sbjct: 224 CIVSVNYVLS 233
>gi|338719808|ref|XP_001493256.3| PREDICTED: hypoxia-inducible factor 1-alpha-like [Equus caballus]
Length = 764
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 63 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 104
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 105 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNGNQS 149
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 150 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 209
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 210 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 269
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 270 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 299
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 35 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 68
>gi|37779200|gb|AAO72733.1| hypoxia-inducible factor 1 alpha [Xenopus laevis]
Length = 489
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 95/264 (35%), Gaps = 106/264 (40%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH EL E L +G A G E
Sbjct: 107 LTQFELTGHSVFDFTHPCDHEELREMLTFR----NGPAKKGKEQITE------------- 149
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG----------------------------- 102
RSF +RMK T+T RG
Sbjct: 150 ----------------RSFFLRMKCTVTSRGRTVNIKSATWKVLHCTGHMRVYDNANNQK 193
Query: 103 -CHFKSSGYRSL----------DGFAFALGS---------DGRFLYISETV--------- 133
C +K + + F L S D +F Y E V
Sbjct: 194 HCGYKKPPMKCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELVGYDPD 253
Query: 134 -----SIY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S+Y L + + KGQV T YR++ K GGY WV++ ATV+ +SK
Sbjct: 254 ELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSK 313
Query: 179 NADEQNIICVNYVISGREYENFIM 202
N+ Q I+CVNYV+S ++ I+
Sbjct: 314 NSQPQCIVCVNYVLSEVVEKDLIL 337
>gi|426233494|ref|XP_004010752.1| PREDICTED: hypoxia-inducible factor 1-alpha [Ovis aries]
Length = 764
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 63 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 104
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 105 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 149
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 150 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 209
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 210 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 269
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 270 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 299
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 35 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 68
>gi|361095159|gb|AEW10558.1| HIF-1 alpha [Capra hircus]
Length = 823
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLI-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|449278511|gb|EMC86333.1| Hypoxia-inducible factor 1 alpha, partial [Columba livia]
Length = 801
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH EL E L + +G G + E
Sbjct: 112 LTQFELTGHSVFDFTHPCDHEELREML----THRNGPVKKGKEQNTE------------- 154
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 155 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYDTCGNQT 198
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 199 HCGYKKPPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 258
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 259 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTK 318
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG ++ I Q E
Sbjct: 319 NSQPQCIVCVNYVLSGIVQKDLIFSLGQTE 348
>gi|194741162|ref|XP_001953058.1| GF17581 [Drosophila ananassae]
gi|190626117|gb|EDV41641.1| GF17581 [Drosophila ananassae]
Length = 746
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPSAYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|358332012|dbj|GAA50744.1| single-minded protein [Clonorchis sinensis]
Length = 838
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 116/308 (37%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVEMTG+ + +Y+H DH EL + L + S+ LA+ G A
Sbjct: 334 QVEMTGNEMIEYLHPLDHEELKQLLTIHPSE---LATNGGAQDFL--------------- 375
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR-------------SLDGF---- 116
+RSF +R+K L KR ++G++ ++DGF
Sbjct: 376 ------------LERSFVLRIKCVLAKRNAGLTTAGFKVIHCSGHLKVRSVTVDGFPYYQ 423
Query: 117 -----AFALG-------------SDGRFLY--------------------------ISET 132
AFA + G F++ I +T
Sbjct: 424 NLGLIAFAYAIPSPNANNTEIRLTSGMFMFRASLDLKLIFLEGRIASITGFQPQELIDKT 483
Query: 133 V--------SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
+ S+ L + ++ KGQV T YYRLM K GG+ W+QS AT+V +S+++
Sbjct: 484 LYQLVHVVDSVALRRAHETLLIKGQVTTPYYRLMTKTGGWVWMQSYATIVHNSRSSRPNC 543
Query: 185 IICVNYVISGREYEN--FIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSG 242
I+ VNY++S E + I++ C +NN+P ++ + + ++
Sbjct: 544 IVSVNYLLSRPENRDSLLILEQCN---------------TNNNPVAAMKNSQKLNTESTE 588
Query: 243 DSRNHDHL 250
D ++ HL
Sbjct: 589 DQQDQRHL 596
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 110 YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++S+DGF F + +G+ LYISET S+ LGLSQ ++
Sbjct: 303 FKSMDGFIFIISPEGKILYISETASVLLGLSQVEM 337
>gi|325513893|gb|ADZ23995.1| hypoxia-inducible factor 2a [Myxocyprinus asiaticus]
Length = 782
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 98/244 (40%), Gaps = 46/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L G + N+E M +
Sbjct: 121 LAQVELTGHSIFDFTHPCDHEEIRENLSFKTGMGKKVKD---LNTERDFFMRMKCTVTNR 177
Query: 72 SSLMSLSSSS-----------SYKGCDRSFCIRMKS---TLTKRGCH---FKSSGYRSLD 114
++L S+S Y GC K T C S+ LD
Sbjct: 178 GRTVNLKSASWKVLHCTGQLKVYNGCPAHVLCGFKEPPLTCVVMMCEPIPHPSNIDTPLD 237
Query: 115 GFAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVINKG 148
F D +F Y + V+ +G S + KG
Sbjct: 238 SKTFLSRHSMDMKFTYCDDRVTELMGYNPEDLLGRSAYEFYHALDSDSVTKSHQNLCTKG 297
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
Q ++ YR++ K+GGY WV++ TV+ +S+N+ Q I+CVNYV+S E ++ I Q E
Sbjct: 298 QAVSGQYRMLAKHGGYVWVETQGTVIYNSRNSQPQCIVCVNYVLSDIEEKSIIFSLDQTE 357
Query: 209 DYIQ 212
++
Sbjct: 358 SLLK 361
>gi|431912714|gb|ELK14732.1| Endothelial PAS domain-containing protein 1 [Pteropus alecto]
Length = 884
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 110/275 (40%), Gaps = 105/275 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 135 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 176
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
S+ +R F +RMK T+T RG + KS+ ++
Sbjct: 177 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVLHCTGQVKVYNNCPPHS 223
Query: 112 SLDGFAFALGS------------------------------DGRFLY----ISETVSIY- 136
SL G+ L S D +F Y I+E V +
Sbjct: 224 SLCGYKEPLLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRITELVGYHP 283
Query: 137 ---LGLSQWQ----------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177
LG S ++ + KGQV++ YR++ K+GGY W+++ TV+ +
Sbjct: 284 EELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNP 343
Query: 178 KNADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
+N Q I+CVNYV+S E + + Q E +
Sbjct: 344 RNLQPQCIMCVNYVLSEIEKNDVVFSMDQTESLFK 378
>gi|290760624|gb|ADD59897.1| hypoxia-inducible factor 2 alpha [Hemiscyllium ocellatum]
Length = 709
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 50/246 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPGSANSEEGSGMNTGTANP 69
+ QVE+TG S+FD+ H DH E+ E L + G + H N+E M
Sbjct: 75 LTQVELTGHSIFDFTHPCDHEEIRENLTIKNGFGKKHR-----DMNTERDFFMRMKCTVT 129
Query: 70 DVSSLMSLSSSS-----------SYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS----- 112
+ ++L S++ Y C + C + LT + + S
Sbjct: 130 NRGRTVNLKSATWKVLHCTGHIKIYNACQAHTLCGYKEPPLTCLIMMCEPIQHPSNIDIP 189
Query: 113 LDGFAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVIN 146
LD F D +F Y E ++ +G S +
Sbjct: 190 LDSKTFLSRHSMDMKFTYCDERIAALMGYCPEELLGRSVYEFYHALDSDHMIKSHQNLCT 249
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQ +T YR++ K+GGY WV++ TV+ +S+N+ Q I+CVNYV+S E +N + Q
Sbjct: 250 KGQSVTGQYRMLAKHGGYVWVETQGTVIYNSRNSQPQCIVCVNYVLSEIEEKNVVFSMDQ 309
Query: 207 LEDYIQ 212
E +
Sbjct: 310 TESLFK 315
>gi|74219449|dbj|BAE29500.1| unnamed protein product [Mus musculus]
Length = 836
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|194384556|dbj|BAG59438.1| unnamed protein product [Homo sapiens]
Length = 669
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 56 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 111
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 112 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 170
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 171 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 219
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 220 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 278
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 279 IIQHDLIFSLQQTE 292
>gi|226061948|ref|NP_034561.2| hypoxia-inducible factor 1-alpha [Mus musculus]
gi|32470615|sp|Q61221.3|HIF1A_MOUSE RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha; AltName: Full=ARNT-interacting protein
gi|148704553|gb|EDL36500.1| hypoxia inducible factor 1, alpha subunit, isoform CRA_a [Mus
musculus]
Length = 836
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|2821940|emb|CAA70306.1| hypoxia-inducible factor one alpha [Mus musculus]
Length = 822
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|26329679|dbj|BAC28578.1| unnamed protein product [Mus musculus]
Length = 837
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 209
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 210 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 269
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 270 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 330 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 363
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 128
>gi|20070686|gb|AAH26139.1| Hypoxia inducible factor 1, alpha subunit [Mus musculus]
Length = 836
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|2113881|emb|CAA70305.1| hypoxia-inducible factor one alpha [Mus musculus]
Length = 810
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 110 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 151
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 152 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 196
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 197 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 256
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 257 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 316
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 317 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 350
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 115
>gi|395504059|ref|XP_003756377.1| PREDICTED: hypoxia-inducible factor 1-alpha [Sarcophilus harrisii]
Length = 811
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 98/243 (40%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH EL E L +G G + E
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELREML----IHRNGPVKKGKEQNTERSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G MN +A V L Y C+ +S C K +T + + S
Sbjct: 178 RGRTMNIKSATWKV--LHCTGHIRVYDTCNNQSQCGYKKPPMTCLVLICEPIPHPSNIEV 235
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------ 145
LD F D +F Y E ++ +G +++
Sbjct: 236 PLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF 295
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I
Sbjct: 296 TKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIVQHDLIFSLG 355
Query: 206 QLE 208
Q E
Sbjct: 356 QTE 358
>gi|432096666|gb|ELK27249.1| Hypoxia-inducible factor 1-alpha [Myotis davidii]
Length = 840
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 63 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 104
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 105 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNGNQS 149
Query: 109 --GYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 150 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 209
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 210 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 269
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVN+V+SG + I Q E
Sbjct: 270 NSQPQCIVCVNFVVSGIIQHDLIFSLQQTE 299
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 35 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 68
>gi|2197095|gb|AAC53455.1| hypoxia-inducible factor 1 alpha [Mus musculus]
gi|2289249|gb|AAC53461.1| hypoxia-inducible factor 1 alpha [Mus musculus]
Length = 836
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|26345338|dbj|BAC36320.1| unnamed protein product [Mus musculus]
Length = 736
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 22 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 63
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 64 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 108
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 109 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 168
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 169 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 228
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 229 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 262
>gi|345122364|gb|AEN74951.1| hypoxia inducible factor 1 alpha subunit [Capra hircus]
Length = 823
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSISEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY W+++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQRDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|195449946|ref|XP_002072296.1| GK22407 [Drosophila willistoni]
gi|194168381|gb|EDW83282.1| GK22407 [Drosophila willistoni]
Length = 743
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPTTYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|198451724|ref|XP_002137347.1| GA26599 [Drosophila pseudoobscura pseudoobscura]
gi|198131616|gb|EDY67905.1| GA26599 [Drosophila pseudoobscura pseudoobscura]
Length = 767
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPSVYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|48927335|emb|CAG29396.1| hypoxia inducible factor 1 alpha [Spalax judaei]
Length = 824
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +EG NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------KEGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGRIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|166343753|gb|ABY86627.1| hypoxia-inducible factor 1 alpha [Hemiscyllium ocellatum]
Length = 816
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 53/256 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGS-ANSEEGSGMNTGTANPD 70
+ Q E+ G SVFD+ H DH E+ E L S GL G N+E +
Sbjct: 121 LTQFELIGHSVFDFTHPCDHEEMREML----SHRQGLLKKGKDQNTERNFFLRMKCTLTS 176
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRM-KSTLTKRGCHFKSSGYRSL----------DGFAFA 119
+++ S++ +K + IR+ KS+ + C +K L
Sbjct: 177 RGRTVNIKSAT-WKVLHCTGHIRVYKSSNEQTHCGYKEPPMTCLILICEPIPHPSNIEVP 235
Query: 120 LGS---------DGRFLYISETVSIYLGLSQWQVI------------------------N 146
L S D +F Y E ++ +G +++
Sbjct: 236 LDSKTFLSRHSLDMKFSYCDERITELMGYQAEELLGRSVYEFYHALDSDHLTKTHHDLFT 295
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQ T YR++ K GGY WV++ ATV+ +SKN+ Q I+CVNYV+SG + I+ Q
Sbjct: 296 KGQATTGQYRMLGKEGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSGLVEKEVILSLDQ 355
Query: 207 LEDYIQQRGVKREEPS 222
+E + K EEPS
Sbjct: 356 IECVPVE---KPEEPS 368
>gi|256089970|ref|XP_002581006.1| meso-ectoderm gene expression control protein; single-minded
[Schistosoma mansoni]
Length = 673
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 101/271 (37%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVEMTG+ + +Y+H DH EL + L T +P S
Sbjct: 30 QVEMTGNEMTEYLHPLDHDELKQIL---------------------------TVHP---S 59
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR---------------------- 111
++ +S S +RSF +R+K L KR ++G++
Sbjct: 60 EIAANSGQSEFTLERSFFLRVKCVLAKRNAGLTTAGFKVIHCNGHLRVRVIHLDGYQYYQ 119
Query: 112 -----------------------SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI--- 145
S+D F F D + +++ +S G +++
Sbjct: 120 NLGLISFAYAIPSPNTNNTEIRLSMDMFMFRASLDLKLIFLEGRISQITGFQPQELVDKT 179
Query: 146 ---------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
NKGQV T YYRL+NK+GG+ W+QS AT++ +S+++
Sbjct: 180 LYQLVHTADVASLRHSHEILLNKGQVTTPYYRLLNKSGGWVWIQSYATIIHNSRSSRPNC 239
Query: 185 IICVNYVISGREYENFIM--DCCQLEDYIQQ 213
++ VNY++S E + + D ED + Q
Sbjct: 240 VVSVNYLLSEIECREYCLLNDPLVYEDIVNQ 270
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
S+DGF F + +GR LYISET S+ LGLSQ ++ G +T Y
Sbjct: 1 SMDGFIFIVSLEGRILYISETASVLLGLSQVEM--TGNEMTEY 41
>gi|195145848|ref|XP_002013902.1| GL24392 [Drosophila persimilis]
gi|194102845|gb|EDW24888.1| GL24392 [Drosophila persimilis]
Length = 764
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPSVYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLIQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV T YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q GV + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|31077211|ref|NP_851397.1| hypoxia-inducible factor 1-alpha isoform 2 [Homo sapiens]
gi|397523305|ref|XP_003831676.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Pan
paniscus]
gi|16326344|dbj|BAB70608.1| hypoxia-inducible factor 1 alpha variant [Homo sapiens]
gi|119601215|gb|EAW80809.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor), isoform CRA_c [Homo sapiens]
Length = 735
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|360044432|emb|CCD81980.1| meso-ectoderm gene expression control protein [Schistosoma mansoni]
Length = 672
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 101/271 (37%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVEMTG+ + +Y+H DH EL + L T +P S
Sbjct: 29 QVEMTGNEMTEYLHPLDHDELKQIL---------------------------TVHP---S 58
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR---------------------- 111
++ +S S +RSF +R+K L KR ++G++
Sbjct: 59 EIAANSGQSEFTLERSFFLRVKCVLAKRNAGLTTAGFKVIHCNGHLRVRVIHLDGYQYYQ 118
Query: 112 -----------------------SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI--- 145
S+D F F D + +++ +S G +++
Sbjct: 119 NLGLISFAYAIPSPNTNNTEIRLSMDMFMFRASLDLKLIFLEGRISQITGFQPQELVDKT 178
Query: 146 ---------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
NKGQV T YYRL+NK+GG+ W+QS AT++ +S+++
Sbjct: 179 LYQLVHTADVASLRHSHEILLNKGQVTTPYYRLLNKSGGWVWIQSYATIIHNSRSSRPNC 238
Query: 185 IICVNYVISGREYENFIM--DCCQLEDYIQQ 213
++ VNY++S E + + D ED + Q
Sbjct: 239 VVSVNYLLSEIECREYCLLNDPLVYEDIVNQ 269
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
+DGF F + +GR LYISET S+ LGLSQ ++ G +T Y
Sbjct: 1 MDGFIFIVSLEGRILYISETASVLLGLSQVEM--TGNEMTEY 40
>gi|114653413|ref|XP_001168948.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 9 [Pan
troglodytes]
gi|410226738|gb|JAA10588.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
gi|410297972|gb|JAA27586.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
gi|410344151|gb|JAA40617.1| hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Pan troglodytes]
Length = 735
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|410962416|ref|XP_003987766.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Felis catus]
Length = 733
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|318217867|ref|NP_001187163.1| HIF 2 alpha [Ictalurus punctatus]
gi|116829910|gb|ABK27926.1| HIF 2 alpha [Ictalurus punctatus]
Length = 816
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 44/243 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGL---SQGHGLASP-------GSANSEEGSG 61
+ QVE+ G S+FD+ H DH E+ E L + +G L++ + G
Sbjct: 119 LTQVELIGHSIFDFTHPCDHEEIRENLSMKTGVGKKGKDLSTERDFFMRMKCTVTSRGRT 178
Query: 62 MNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----LDG 115
+N +A+ V L Y GC R+ C +S LT + + S D
Sbjct: 179 VNLKSASWKV--LHCTGHLKVYNGCSTRTPCGYKESPLTCVVMLCEPVPHPSNIDTPFDS 236
Query: 116 FAFAL--GSDGRFLYISETVSIYLGL------------------------SQWQVINKGQ 149
F D +F Y E V+ +G S + KGQ
Sbjct: 237 KTFLSRHSMDMKFTYCDERVTQLMGYNPEDLLGRSVYEFYHALDSESVTRSHQNLCTKGQ 296
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
++ +YR++ K+GG+ WV++ TV+ SS+N+ Q I+CVNYV+S E ++ I Q E
Sbjct: 297 AVSGHYRMLAKHGGFVWVETQGTVIYSSRNSQPQCIVCVNYVLSDIEEKSTIFSKDQTES 356
Query: 210 YIQ 212
++
Sbjct: 357 LLK 359
>gi|432904408|ref|XP_004077316.1| PREDICTED: LOW QUALITY PROTEIN: endothelial PAS domain-containing
protein 1-like [Oryzias latipes]
Length = 862
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L + G G G S E
Sbjct: 126 LTQVELTGHSIFDFTHPCDHDEIKENLSLK-TTGSGFGKKGKELSTERDFFMRMKCTVTN 184
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y GC R C + LT + + S
Sbjct: 185 RGRTVNLKSAGWKV--LHCTGHLKMYDGCPSRVLCGYKEPPLTCAVLMCEPIPHPSNIDT 242
Query: 113 -LDGFAFAL--GSDGRFLYISETV----------SIY----------LGLSQWQVINKGQ 149
LD F D +F Y + S+Y + S + +KGQ
Sbjct: 243 PLDSRTFLSRHSMDMKFTYCDDKXAENPQSIXGRSVYDFYHALDSDSVTKSHHNLCSKGQ 302
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
++ YR++ K GGY WV++ TV+ +S+N+ Q I+C+NYV+S E I Q E
Sbjct: 303 AVSGQYRMLAKKGGYVWVETQGTVIYNSRNSQPQCIVCINYVLSDIEDRAVIFSLEQTES 362
Query: 210 YIQ 212
+
Sbjct: 363 LFK 365
>gi|432889669|ref|XP_004075303.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Oryzias latipes]
Length = 650
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 67/287 (23%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPGSAN---------SEEGS 60
I Q+E+ G S++D++H D EL + L GLS+ P N + G
Sbjct: 128 ITQLELLGQSIYDFVHPCDQEELRDLLTPRPGLSKKSLAEQPNEVNFFLRMKSTLTNRGR 187
Query: 61 GMN------------------TGTANPDVSSLMSL-------SSSSSYKGCDRSFCIRMK 95
+N +G+A P + +M+L SS + +F R
Sbjct: 188 TVNIKSATWKVLHCSGHIRPFSGSAAPPGARVMTLLCEPIPHPSSVEFPLDTCTFLTRHS 247
Query: 96 STLTKRGCHFKSS---GYRSLD-------GFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
L C + + GY+ D F AL SD ++ S ++
Sbjct: 248 MDLRFTHCEGRVTELVGYKPEDLVGRSAYEFYHALDSD------------HMKKSLHTLL 295
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
+KGQV T +YR + NGG+ W ++ ATV+ SSK + + I+C+N+++S E + +
Sbjct: 296 SKGQVSTSHYRFLANNGGFVWAETQATVLYSSKTSQPEAIVCLNFILSSVEQPDVVFSVE 355
Query: 206 QLEDYIQQRGVKREEPSNNDPEN----DSPDADREDGRNSGDSRNHD 248
Q + G+ + S N P++ DS ++D E S ++++ D
Sbjct: 356 Q-----TRSGLLSKTESPNTPQDSGFSDSCESDAEPTPGSAEAQDLD 397
>gi|359320073|ref|XP_003639250.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Canis lupus
familiaris]
Length = 732
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|349604849|gb|AEQ00283.1| Hypoxia-inducible factor 1 alpha-like protein, partial [Equus
caballus]
Length = 667
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSAN--------------SE 57
+ Q E+TG SVFD+ H DH E+ E L + +GL G +
Sbjct: 16 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTRRSFFLRMKCTLTS 71
Query: 58 EGSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 72 RGRTMNIKSATWKVLHCTGHIHVYDTNGNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 130
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 131 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 179
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 180 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 238
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 239 IIQHDLIFSLQQTE 252
>gi|431904459|gb|ELK09842.1| Hypoxia-inducible factor 1 alpha, partial [Pteropus alecto]
Length = 873
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 111 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 166
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 167 RGRTMNIKSATWKVLHCTGHIHVYDTNGNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 225
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 226 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 274
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 275 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 333
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 334 IIQHDLIFSLQQTE 347
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 83 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 116
>gi|119601212|gb|EAW80806.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor), isoform CRA_a [Homo sapiens]
Length = 827
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 178
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 179 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 238
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 239 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 298
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 299 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 358
Query: 208 E 208
E
Sbjct: 359 E 359
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|194388958|dbj|BAG61496.1| unnamed protein product [Homo sapiens]
Length = 767
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 63 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 104
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 105 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 149
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 150 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 209
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 210 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 269
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV++G + I Q E
Sbjct: 270 NSQPQCIVCVNYVVNGIIQHDLIFSLQQTE 299
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 35 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 68
>gi|4504385|ref|NP_001521.1| hypoxia-inducible factor 1-alpha isoform 1 [Homo sapiens]
gi|397523303|ref|XP_003831675.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Pan
paniscus]
gi|2498017|sp|Q16665.1|HIF1A_HUMAN RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha; AltName: Full=ARNT-interacting
protein; AltName: Full=Basic-helix-loop-helix-PAS
protein MOP1; AltName: Full=Class E basic
helix-loop-helix protein 78; Short=bHLHe78; AltName:
Full=Member of PAS protein 1; AltName: Full=PAS
domain-containing protein 8
gi|6636317|gb|AAF20139.1|AF207601_1 hypoxia-inducible factor 1 alpha [Homo sapiens]
gi|6636319|gb|AAF20140.1|AF207602_1 hypoxia-inducible factor 1 alpha [Homo sapiens]
gi|6636338|gb|AAF20149.1|AF208487_1 hypoxia-inducible factor 1 alpha [Homo sapiens]
gi|881346|gb|AAC50152.1| hypoxia-inducible factor 1 alpha [Homo sapiens]
gi|1144013|gb|AAC51210.1| MOP1 [Homo sapiens]
gi|11995455|gb|AAG43026.1| hypoxia-inducible factor 1 alpha subunit [Homo sapiens]
gi|15214788|gb|AAH12527.1| Hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Homo sapiens]
gi|32879895|gb|AAP88778.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Homo sapiens]
gi|61362865|gb|AAX42294.1| hypoxia-inducible factor 1 alpha subunit [synthetic construct]
gi|119601213|gb|EAW80807.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor), isoform CRA_b [Homo sapiens]
gi|119601214|gb|EAW80808.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor), isoform CRA_b [Homo sapiens]
gi|168278044|dbj|BAG11000.1| hypoxia-inducible factor 1 alpha [synthetic construct]
gi|264685689|dbj|BAI49183.1| hypoxia-inducible factor 1, alpha subunit, variant K12NR [Homo
sapiens]
gi|1097959|prf||2114407A hypoxia-inducible factor 1
Length = 826
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|348573541|ref|XP_003472549.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Cavia porcellus]
Length = 873
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 167 LTQFELTGHSVFDFTHPCDHEEMKEM----LTHRNGPV-------KKGKEQNT------- 208
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 209 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 253
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 254 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 313
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 314 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 373
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 374 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 403
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 139 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 172
>gi|355694631|gb|AER99736.1| hypoxia inducible factor 1, alpha subunit [Mustela putorius furo]
Length = 823
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|332842389|ref|XP_003339308.1| PREDICTED: hypoxia-inducible factor 1-alpha [Pan troglodytes]
gi|332842391|ref|XP_001169001.2| PREDICTED: hypoxia-inducible factor 1-alpha isoform 11 [Pan
troglodytes]
Length = 850
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 146 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 201
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 202 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 261
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 262 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 321
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 322 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 381
Query: 208 E 208
E
Sbjct: 382 E 382
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 118 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 151
>gi|334310623|ref|XP_001377570.2| PREDICTED: hypoxia-inducible factor 1-alpha-like [Monodelphis
domestica]
Length = 1007
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 98/243 (40%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH EL E L +G G + E
Sbjct: 308 LTQFELTGHSVFDFTHPCDHEELREML----IHRNGPVKKGKEQNTERSFFLRMKCTLTS 363
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G MN +A V L Y C+ +S C K +T + + S
Sbjct: 364 RGRTMNIKSATWKV--LHCTGHIRVYDTCNNQSQCGYKKPPMTCLVLICEPIPHPSNIEV 421
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------ 145
LD F D +F Y E ++ +G +++
Sbjct: 422 PLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF 481
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I
Sbjct: 482 TKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIVQHDLIFSLG 541
Query: 206 QLE 208
Q E
Sbjct: 542 QTE 544
>gi|121484012|gb|ABM54325.1| HIF1A [Pan paniscus]
Length = 583
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 110 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 165
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 166 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 224
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 225 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 273
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 274 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 332
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 333 IIQHDLIFSLQQTE 346
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 115
>gi|395508094|ref|XP_003758350.1| PREDICTED: endothelial PAS domain-containing protein 1 [Sarcophilus
harrisii]
Length = 862
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 44/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G G S ++E M +
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGPGFGKKS-KDVSTERDFFMRMKCTVTNR 179
Query: 72 SSLMSLSSSS-----------SYKGC-DRSFCIRMKSTLTK-----RGCHFKSSGYRSLD 114
++L S++ Y C S C + LT S+ LD
Sbjct: 180 GRTVNLKSATWKVLHCTGQVKVYNSCAPHSLCGYKEPLLTCLIIMCEPIQHPSTMDIPLD 239
Query: 115 GFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINKG 148
F D +F Y I+E + + LG S ++ + KG
Sbjct: 240 SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCTKG 299
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
QV++ YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + + Q E
Sbjct: 300 QVISGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIEKNDVVFSMDQTE 359
Query: 209 DYIQ 212
+
Sbjct: 360 SLFK 363
>gi|178056663|ref|NP_001116596.1| hypoxia-inducible factor 1-alpha [Sus scrofa]
gi|118136505|gb|ABK62873.1| hypoxia-inducible factor 1alpha [Sus scrofa]
Length = 824
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNNNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|130486012|ref|NP_001076251.1| hypoxia-inducible factor 1-alpha [Oryctolagus cuniculus]
gi|31095610|gb|AAP43517.1| hypoxia inducible factor 1 alpha subunit [Oryctolagus cuniculus]
Length = 819
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|326915260|ref|XP_003203937.1| PREDICTED: endothelial PAS domain-containing protein 1-like
[Meleagris gallopavo]
Length = 944
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 46/245 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 197 LTQVELTGHSIFDFTHPCDHEEIRENLSLKTGPGFGKKSKEMSTERDFFMRMKCTVTNRG 256
Query: 60 SGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----L 113
+N +A V L Y C + C + LT + + S L
Sbjct: 257 RTVNLKSATWKV--LHCTGQVKVYNTCPPHTLCGYKEPLLTCLIIMCEPIQHPSNIDIPL 314
Query: 114 DGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINK 147
D F D +F Y I+E + + LG S ++ + K
Sbjct: 315 DSKTFMSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTK 374
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV+T YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + + Q
Sbjct: 375 GQVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIEKNDIVFSMDQT 434
Query: 208 EDYIQ 212
E +
Sbjct: 435 ESLFK 439
>gi|426377113|ref|XP_004055320.1| PREDICTED: hypoxia-inducible factor 1-alpha [Gorilla gorilla
gorilla]
Length = 604
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 237
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 238 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 297
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 298 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 357
Query: 208 E 208
E
Sbjct: 358 E 358
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|297298011|ref|XP_002805105.1| PREDICTED: hypoxia-inducible factor 1-alpha [Macaca mulatta]
Length = 769
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 65 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 106
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 107 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 151
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 152 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 211
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 212 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 271
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 272 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 301
>gi|148229705|ref|NP_001080449.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Xenopus laevis]
gi|27696866|gb|AAH43769.1| Hif1a-prov protein [Xenopus laevis]
Length = 802
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 97/268 (36%), Gaps = 106/268 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH EL E L +G A G E
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELREMLTFR----NGPAKKGKEQITE------------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHMRVYDNANNQN 208
Query: 109 --GYRSLD---------------GFAFALGS---------DGRFLYISETV--------- 133
GY+ F L S D +F Y E V
Sbjct: 209 HCGYKKPPMTCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELVGYEPD 268
Query: 134 -----SIY----------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
S+Y L + + KGQV T YR++ K GGY WV++ ATV+ +SK
Sbjct: 269 ELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQ 206
N+ Q I+CVNYV+S ++ I+ Q
Sbjct: 329 NSQPQCIVCVNYVLSEVVEKDLILSLGQ 356
>gi|111143467|gb|ABH06560.1| hypoxia inducible factor isoform 2 [Bos grunniens]
Length = 864
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 163 LTQFEPTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 218
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C S L S+ L
Sbjct: 219 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCSVLICEPIPHPSNIEIPL 278
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 279 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 338
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY W+++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 339 GQVTTGQYRMLAKRGGYVWIETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 398
Query: 208 E 208
E
Sbjct: 399 E 399
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQ 143
++LDGF L DG +YIS+ V+ Y+GL+Q++
Sbjct: 135 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFE 167
>gi|449504557|ref|XP_002200394.2| PREDICTED: hypoxia-inducible factor 1-alpha [Taeniopygia guttata]
Length = 825
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 100/243 (41%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH EL E L+ +G G + E
Sbjct: 136 LTQFELTGHSVFDFTHPCDHEELREM----LTHRNGPVKKGKEQNTERSFFLRMKCTLTS 191
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGC-DRSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y C +++ C K +T + + S
Sbjct: 192 RGRTVNIKSATWKV--LHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEV 249
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------ 145
LD F D +F Y E ++ +G +++
Sbjct: 250 PLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF 309
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG ++ I
Sbjct: 310 TKGQVTTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLG 369
Query: 206 QLE 208
Q E
Sbjct: 370 QTE 372
>gi|326921175|ref|XP_003206838.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Meleagris
gallopavo]
Length = 837
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+ H DH EL E L + +G G + E
Sbjct: 148 LTQFDLTGHSVFDFTHPCDHEELREML----THRNGPVKKGKEQNTE------------- 190
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 191 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYDTCNNQT 234
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 235 HCGYKKPPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 294
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 295 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTK 354
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG ++ I Q E
Sbjct: 355 NSQPQCIVCVNYVLSGIVQKDLIFSLGQTE 384
>gi|296240117|gb|ADH01740.1| hypoxia-inducible factor 1 alpha [Oratosquilla oratoria]
Length = 1050
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 86/222 (38%), Gaps = 35/222 (15%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLA--SPGSANSEEGSGMNTGTANPDV 71
QVEM G + DY H DH E E L L S H A + +G +N +A V
Sbjct: 140 QVEMMGQLLTDYTHPCDHEEARELLSLKCSTDHRFAFLRLKCTLAAKGRNVNLKSATYKV 199
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFAL--GSDGRFLYI 129
+S S G D F F LD F D +F Y+
Sbjct: 200 VQ-VSGEIVHSDGGVDSWFVALASPVPNPANVEF------PLDKQTFVSRHSLDMKFTYV 252
Query: 130 SETVSIYLGLSQWQVIN------------------------KGQVLTHYYRLMNKNGGYT 165
+++ +LG +++ KGQV T YR + + GGY
Sbjct: 253 DDSICEFLGYGPEELVGQSAYALHHALDAQIVKESFKTLLVKGQVETSRYRFLARGGGYA 312
Query: 166 WVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
WV + AT + K+ Q I+C+NYV+SG E I+ QL
Sbjct: 313 WVVTQATRITGPKDHKPQCIVCLNYVVSGIETPELILSDLQL 354
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 70 DVSSLMSLSSS--SSYKGCDRSFCIRMKSTL--TKRGCHFKSSGYRSLDGFAFALGSDGR 125
D +S+M L+ + + C++ ++K +K SS ++LDGF L +G
Sbjct: 65 DKASVMRLTIAFLKTRALCEKGVLRKVKEMGDGSKIDAEMDSSLLKALDGFVVILSMEGD 124
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHY 154
+Y+S+ VS +LG+SQ +++ GQ+LT Y
Sbjct: 125 IVYLSDNVSTHLGVSQVEMM--GQLLTDY 151
>gi|126697516|gb|ABO26715.1| hypoxia-inducible factor 1 alpha [Esox lucius]
Length = 763
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ W+++ ATV+ ++KN+ Q ++CVNYV+SG E E ++
Sbjct: 300 LFTKGQVSTGQYRMLAKRGGFVWLETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKLVLS 359
Query: 204 CCQLEDYIQQRGVKR 218
Q+ED R VK+
Sbjct: 360 LEQIED---MRPVKK 371
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
F S ++L+GF L DG +Y+SE V+ LGL+Q+ +
Sbjct: 93 QFNGSYLKALEGFVMVLSEDGDMIYLSENVNKCLGLAQFDL 133
>gi|197098558|ref|NP_001126975.1| hypoxia-inducible factor 1-alpha [Pongo abelii]
gi|55733347|emb|CAH93355.1| hypothetical protein [Pongo abelii]
Length = 827
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 209
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 210 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 269
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 270 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 330 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 359
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|410910578|ref|XP_003968767.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Takifugu
rubripes]
Length = 658
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 59/261 (22%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPGSAN---------SEEGS 60
I+Q+E+ G SV+D+IH D EL + L GL++ P N + G
Sbjct: 128 IVQLELLGQSVYDFIHPCDQEELTDLLTPRPGLNKKLMKDLPNDLNFFLRMKSTLTNRGR 187
Query: 61 GMNTGTA-------------------NPDVSSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +A +P + +M L SS + +F R
Sbjct: 188 TVNIKSAEWKVLHCTGHMCPFGGEPSSPAAARVMVLLCEPIPHPSSVEFPLDTYTFLTRH 247
Query: 95 KSTLTKRGCHFKSS---GYRSLD-----GFAF--ALGSDGRFLYISETVSIYLGLSQWQV 144
L C + + GY+ D F F AL SD +IS+++ L
Sbjct: 248 SMDLRFTHCEGRVTELVGYKPDDLIGRSAFEFHHALDSD----HISKSLRTLL------- 296
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + NGG+ W ++ ATV+ S K + + I+C+N+++S E F+
Sbjct: 297 -SKGQVSTRHYRFLANNGGFVWAETQATVLYSGKTSQPEAIVCLNFILSSVEQPEFVFSI 355
Query: 205 CQLEDYIQQRGVKREEPSNND 225
Q+ + V P+++D
Sbjct: 356 EQVHSDPPEANVPALAPADSD 376
>gi|344254779|gb|EGW10883.1| Hypoxia-inducible factor 1 alpha [Cricetulus griseus]
Length = 820
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 110 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 151
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 152 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 196
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 197 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 256
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 257 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 316
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 317 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 346
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 115
>gi|354492579|ref|XP_003508425.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Cricetulus
griseus]
Length = 818
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 110 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 151
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 152 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 196
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 197 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 256
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 257 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 316
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 317 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 346
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 115
>gi|124111265|gb|ABM92027.1| HIF1A [Pan troglodytes]
Length = 436
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 46 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 101
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 102 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 161
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 162 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 221
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 222 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 281
Query: 208 E 208
E
Sbjct: 282 E 282
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 18 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 51
>gi|45383550|ref|NP_989628.1| hypoxia-inducible factor 1-alpha [Gallus gallus]
gi|32469796|sp|Q9YIB9.2|HIF1A_CHICK RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|7594825|dbj|BAA34234.2| hypoxia-inducible factor-1 alpha [Gallus gallus]
Length = 811
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+ H DH EL E L + +G G + E
Sbjct: 122 LTQFDLTGHSVFDFTHPCDHEELREML----THRNGPVKKGKEQNTE------------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYDTCNNQT 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 HCGYKKPPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG ++ I Q E
Sbjct: 329 NSQPQCIVCVNYVLSGIVQKDLIFSLGQTE 358
>gi|405978067|gb|EKC42482.1| Single-minded-like protein 1 [Crassostrea gigas]
Length = 701
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 98/270 (36%), Gaps = 105/270 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+TGSS+F+YIH +DH E+ L T +P S
Sbjct: 114 QIELTGSSIFEYIHPSDHEEMTAVL---------------------------TYSPTYS- 145
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+S +RSF IRMK L KR S GY+ +
Sbjct: 146 ----TSCLPEFEVERSFFIRMKCVLAKRNAGLTSGGYKVIHCGGYLKIKQFNMEMSPYEG 201
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+ F F D + +++ V+ G +I +
Sbjct: 202 CQQNVGLVAIGHSLPPSAITEMKMFSNMFMFRASLDLKLIFLDARVAQLTGYEPQDLIER 261
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T YYR + K+GG+ W+QS AT+V +S+++
Sbjct: 262 TLYQYIHACDIVHMKFAHHTLLLKGQVTTKYYRFLAKDGGWVWIQSYATIVHNSRSSRPH 321
Query: 184 NIICVNYVISGREYENFIMDCCQLEDYIQQ 213
I+ VNYV+S E + QLE +Q+
Sbjct: 322 CIVSVNYVLSDVEARGLQI---QLEQTVQK 348
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 84 QTLDGFIFVVAPDGKIMYISETASVHLGLSQIEL 117
>gi|109083868|ref|XP_001099149.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 7 [Macaca
mulatta]
gi|402876371|ref|XP_003901945.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Papio
anubis]
gi|380787331|gb|AFE65541.1| hypoxia-inducible factor 1-alpha isoform 1 [Macaca mulatta]
gi|383409707|gb|AFH28067.1| hypoxia-inducible factor 1-alpha isoform 1 [Macaca mulatta]
gi|384942934|gb|AFI35072.1| hypoxia-inducible factor 1-alpha isoform 1 [Macaca mulatta]
Length = 826
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|126697522|gb|ABO26718.1| hypoxia-inducible factor 1 alpha [Sander lucioperca]
Length = 749
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I+
Sbjct: 294 LFAKGQVSTGQYRMLAKKGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKQILS 353
Query: 204 CCQLEDYIQQRGVKREE 220
Q+ED R VK EE
Sbjct: 354 LEQIEDV---RPVKEEE 367
>gi|395843414|ref|XP_003794480.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Otolemur
garnettii]
Length = 827
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNNNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|223648522|gb|ACN11019.1| Hypoxia-inducible factor 1 alpha [Salmo salar]
Length = 802
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 107/276 (38%), Gaps = 106/276 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF+Y H DH EL E L H + S++ G NT
Sbjct: 174 LAQFDLTGLSVFEYTHPCDHEELREILV------HR-----TGTSKKSKGPNT------- 215
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
+RSF +RMK TLT RG + KS+ ++
Sbjct: 216 ---------------ERSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVAPAEQNPCGH 260
Query: 112 -----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVIN 146
LD F D +F Y E ++ +G ++N
Sbjct: 261 KEPPVSYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKFTYCDERITELMGYDPEDLLN 320
Query: 147 ------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE 182
KGQV T YR++ K GG+ WV++ ATV+ ++KN+
Sbjct: 321 RSVYEYYHALDSDHLIKTHHNLFVKGQVSTGQYRMLAKIGGFVWVETQATVIYNNKNSQP 380
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKR 218
Q ++ VN+V+SG E E ++ Q ED R VK+
Sbjct: 381 QCVVSVNFVLSGIE-EKMVLSLEQTED---MRSVKK 412
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 108 SGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S ++L+GF L DG +Y+SE V+ YLGL+Q+ +
Sbjct: 143 SYLKALEGFLMVLSEDGDMIYLSENVNKYLGLAQFDL 179
>gi|403264367|ref|XP_003924457.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|63028439|gb|AAY27087.1| hypoxia-inducible factor 1 alpha [Microtus oeconomus]
Length = 828
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|195037447|ref|XP_001990172.1| GH18379 [Drosophila grimshawi]
gi|193894368|gb|EDV93234.1| GH18379 [Drosophila grimshawi]
Length = 774
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 70/271 (25%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP G + G
Sbjct: 139 QVELTGNSIFEYIHSYDQDEMNAILSLHPHMHQHPLAQTHTPIGSPNGVQHPAAYGHDRG 198
Query: 66 TANPDVSSLMSLS------------SSSSYKGCDRSFCIRMKST---------------L 98
+ ++ L ++S +K S ++ + L
Sbjct: 199 SHTIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDCGDGQGSLVQNLGL 258
Query: 99 TKRGCHFKSSGYRSL----DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK------- 147
G SS + + F F D + ++ VS G +I K
Sbjct: 259 VAVGHSLPSSSITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQYIH 318
Query: 148 -----------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
GQV + YYR + K GG+ WVQS AT+V +S+++ E I+ VNY
Sbjct: 319 AADIMPMRCSHQILLYKGQVTSKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNY 378
Query: 191 VISGREYENFIMDCCQLEDYIQQRGVKREEP 221
V+S RE ++ +++ Q G+ + EP
Sbjct: 379 VLSEREVKDLVLNEI-------QTGIIKREP 402
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S + +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPVMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>gi|332237268|ref|XP_003267827.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 1 [Nomascus
leucogenys]
Length = 826
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGREQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|54020803|ref|NP_001005647.1| endothelial PAS domain protein 1 [Xenopus (Silurana) tropicalis]
gi|49250453|gb|AAH74648.1| endothelial PAS domain protein 1 [Xenopus (Silurana) tropicalis]
Length = 862
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 44/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGM-------NT 64
+ QVE+TG S+FD+ H DH E+ E L + G G + AN+E M N
Sbjct: 121 LTQVELTGHSIFDFTHPCDHDEIKENLSMKTGVGSGKKN-KDANTEHDFFMRMKCTVTNR 179
Query: 65 G-TANPDVSSLMSLSSSSSYKGCD----RSFCIRMKSTLTK-----RGCHFKSSGYRSLD 114
G T N ++ L + K + S C + L+ + S+ LD
Sbjct: 180 GRTVNLKSATWKVLHCTGHVKAYNSYYPHSLCGYKEPVLSCLIMMCQPIQHPSNIDIPLD 239
Query: 115 GFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINKG 148
F D +F Y I+E + + LG S ++ + KG
Sbjct: 240 SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCAKG 299
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
QV+T YR++ K+GGY WV++ +TV+ +++N+ Q I+CVNYV+S E + + Q E
Sbjct: 300 QVVTGQYRMLAKHGGYLWVETQSTVIYNTRNSQPQCIVCVNYVLSEIEKNDVVFSMDQTE 359
Query: 209 DYIQ 212
+
Sbjct: 360 SLFK 363
>gi|298104182|gb|ADI54941.1| hypoxia inducible factor 1 alpha subunit [Microtus kikuchii]
Length = 828
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|71911739|gb|AAZ52832.1| hypoxia inducible factor 1 alpha [Zoarces viviparus]
Length = 747
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I+
Sbjct: 292 LFTKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILS 351
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPD 232
Q+ED + +++E N+ E+ PD
Sbjct: 352 LEQIEDVKPVKEEEQQEEENDVVESSQPD 380
>gi|148251122|gb|ABQ53550.1| hypoxia-inducible factor 1 alpha [Eospalax cansus]
Length = 818
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|13242249|ref|NP_077335.1| hypoxia-inducible factor 1-alpha [Rattus norvegicus]
gi|4580533|gb|AAD24413.1|AF057308_1 hypoxia-inducible factor-1 alpha [Rattus norvegicus]
Length = 823
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 97/245 (39%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L+ +G G + +
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPVRKGKEQNTQRSFFLRMKCTLTS 178
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + +SS+ C L S+ L
Sbjct: 179 RGRTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 238
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 239 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 298
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 299 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 358
Query: 208 EDYIQ 212
E ++
Sbjct: 359 ESVLK 363
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|149051449|gb|EDM03622.1| hypoxia inducible factor 1, alpha subunit, isoform CRA_b [Rattus
norvegicus]
Length = 826
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 97/245 (39%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L+ +G G + +
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPVRKGKEQNTQRSFFLRMKCTLTS 178
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + +SS+ C L S+ L
Sbjct: 179 RGRTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 238
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 239 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 298
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 299 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 358
Query: 208 EDYIQ 212
E ++
Sbjct: 359 ESVLK 363
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|4379202|emb|CAA64833.1| hypoxia-inducible factor one alpha [Mus musculus]
Length = 810
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 101/274 (36%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+ G SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 110 LTQFELAGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 151
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 152 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 196
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 197 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 256
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 257 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 316
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 317 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 350
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 115
>gi|327280975|ref|XP_003225226.1| PREDICTED: endothelial PAS domain-containing protein 1-like [Anolis
carolinensis]
Length = 871
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 107/272 (39%), Gaps = 54/272 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G S E
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKNGPGFGKKNKEMSMERDFFMRMKCTVTN 178
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTK------RGCHFKSSGYR 111
G +N +A V L Y C K L S+
Sbjct: 179 RGRTVNLKSATWKV--LHCTGQIKVYNTCPPHALCGYKEPLLSCLVLMCEPIQHPSNTDI 236
Query: 112 SLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VI 145
LD F D +F Y I+E V + LG S ++ +
Sbjct: 237 PLDSKTFLSRHSMDMKFTYCDDRITELVGYHPDELLGRSAYEFYHALDSENMTKSHQNLC 296
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV+T YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + +
Sbjct: 297 AKGQVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIENNDIVFSMD 356
Query: 206 QLEDYIQQRGVKREEPSNNDPENDSPDADRED 237
Q E + R + N+ +N P D+ D
Sbjct: 357 QTESLFKPRMMAM----NSVYDNGIPVTDKSD 384
>gi|156397887|ref|XP_001637921.1| predicted protein [Nematostella vectensis]
gi|156225037|gb|EDO45858.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 94/249 (37%), Gaps = 106/249 (42%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+TG+S++ Y+H DH ELA QLG G +
Sbjct: 127 QIEVTGNSLYKYVHPCDHEELANQLGAGSKR----------------------------- 157
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR-------------------- 111
+ SS YK SF +RMKSTLT RG + ++S YR
Sbjct: 158 ---VDSSDHYK----SFFLRMKSTLTSRGKNVNLRASTYRVVHCTGSMKYKTIINKEGQE 210
Query: 112 -SLDGFAFALGS-----------------------DGRFLYISETVSIYLGLSQ------ 141
+ F A+ D +FL + VS LG ++
Sbjct: 211 QKVPLFLVAIAVPLMFATTFEVPLDRGTFTSRHMLDMKFLQCDDRVSSLLGYTREEMIGK 270
Query: 142 -W-----------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
W ++ KGQ ++ YYR M + GG+ W+Q+ A VV SK Q
Sbjct: 271 SWYSFHHAADLDNVLNTHKMLLTKGQSVSKYYRFMVRGGGWVWLQTKANVVYDSKTCQPQ 330
Query: 184 NIICVNYVI 192
+ C+NYV+
Sbjct: 331 FVFCINYVL 339
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 105 FKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
F ++LDGF + + DG+ LYISE V+ YLGLSQ +V
Sbjct: 91 FDKQLLQALDGFVYVIAQDGQCLYISENVTYYLGLSQIEV 130
>gi|332237272|ref|XP_003267829.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 3 [Nomascus
leucogenys]
Length = 850
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 146 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGREQNT------- 187
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 188 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 232
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 233 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 292
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 293 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 352
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 353 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 382
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 118 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 151
>gi|37594329|gb|AAQ94179.1| Hif3a [Danio rerio]
Length = 626
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 52/263 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGL-----ASPGSANSEEGSGMNT 64
I Q+E+ G SV++++H D EL + L G+S+ + S + G +N
Sbjct: 119 ITQLELLGQSVYEFVHPCDQEELRDILATRPGVSKKKTMEHNFFLRMKSTLTHTGRTVNI 178
Query: 65 GTA--------------------NPDVSSLMSL-------SSSSSYKGCDRSFCIRMKST 97
+A +P S ++L SS + +F R
Sbjct: 179 KSATWKVLHCTGHMQPFSGDDENSPSAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHNLD 238
Query: 98 LTKRGCHFKSS---GYRSLDGF---AFALGSDGRFLYISETVSIYLGLSQWQVINKGQVL 151
LT C + + GY+ D AF F ++S ++ I + +KGQV
Sbjct: 239 LTYTQCDGRVTELVGYQPDDLIGRSAFEFFHALDFDHVSRSLHI--------LFSKGQVC 290
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD----CCQL 207
T YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E ++ + C +
Sbjct: 291 TGQYRFLTKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEQDVVFSLEQTCEKP 350
Query: 208 EDYIQQRGVKREEPSNNDPENDS 230
+ +++ V +EE ++D E S
Sbjct: 351 KPKVERLMVLKEEQEDSDMEESS 373
>gi|432898437|ref|XP_004076501.1| PREDICTED: single-minded homolog 2-like [Oryzias latipes]
Length = 683
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 50/227 (22%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSAN-----------SEEGSGM 62
QVE+TG+S+F+Y+H +DH E+ L LG Q H + ++ +G+
Sbjct: 116 QVELTGNSIFEYVHPSDHDEMTTVLCLGKPQRHHFSHEFEIERSFFLRMKCVLAKRNAGL 175
Query: 63 NTGTANP-DVSSLMSLSS----SSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL---- 113
G S + L + Y+ C ++ L G SG +
Sbjct: 176 TCGGYKVIHCSGYLKLRQYVMDMALYESCYQTV------GLVAVGHSLPPSGITEIKLHS 229
Query: 114 DGFAFALGSDGRFLYISETVS------------------------IYLGLSQWQVINKGQ 149
+ F F D + +++ V+ +L + ++ KGQ
Sbjct: 230 NMFMFRASLDLKLIFLDMKVAELTGYEPQDLIEKTLYHHVHTCDVFHLRYAHHLLLVKGQ 289
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
V T YYRL++K+GG+ WVQS AT+V +S+++ I+ VNYV++ E
Sbjct: 290 VTTKYYRLLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDVE 336
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIIYISETASVHLGLSQVEL 119
>gi|118573327|sp|Q309Z6.1|HIF1A_EOSBA RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|78058356|gb|ABB17537.1| hypoxia inducible factor 1 alpha subunit [Eospalax baileyi]
Length = 819
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPI-------KKGKEQNT------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 209
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 210 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 269
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 270 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 330 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 359
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|334312813|ref|XP_001382184.2| PREDICTED: endothelial PAS domain-containing protein 1 [Monodelphis
domestica]
Length = 1354
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 46/245 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 613 LTQVELTGHSIFDFTHPCDHEEIRENLSLKSGSGFGKKSKDMSTERDFFMRMKCTVTNRG 672
Query: 60 SGMNTGTANPDVSSLMSLSSSSSYKGC-DRSFCIRMKSTLTK-----RGCHFKSSGYRSL 113
+N +A V L Y C S C + LT S+ L
Sbjct: 673 RTVNLKSATWKV--LHCTGQVKVYNSCAPHSLCGYKEPLLTCLIVMCEPIQHPSTMDIPL 730
Query: 114 DGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINK 147
D F D +F Y I+E + + LG S ++ + K
Sbjct: 731 DSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCTK 790
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV++ YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + + Q
Sbjct: 791 GQVISGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIEKNDVVFSMDQT 850
Query: 208 EDYIQ 212
E +
Sbjct: 851 ESLFK 855
>gi|295001556|gb|ADF58783.1| hypoxia-inducible factor 3 alpha subunit isoform 1 [Danio rerio]
Length = 626
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 52/263 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGL-----ASPGSANSEEGSGMNT 64
I Q+E+ G SV++++H D EL + L G+S+ + S + G +N
Sbjct: 119 ITQLELLGQSVYEFVHPCDQEELRDILATRPGVSKKKTMEHNFFLRMKSTLTHTGRTVNI 178
Query: 65 GTA--------------------NPDVSSLMSL-------SSSSSYKGCDRSFCIRMKST 97
+A +P S ++L SS + +F R
Sbjct: 179 KSATWKVLHCTGHMQPFSGDDENSPSAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHNLD 238
Query: 98 LTKRGCHFKSS---GYRSLDGF---AFALGSDGRFLYISETVSIYLGLSQWQVINKGQVL 151
LT C + + GY+ D AF F ++S ++ I + +KGQV
Sbjct: 239 LTYTQCDGRVTELVGYQPDDLIGRSAFEFFHALDFDHVSRSLHI--------LFSKGQVC 290
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD----CCQL 207
T YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E ++ + C +
Sbjct: 291 TGQYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEQDVVFSLEQTCEKP 350
Query: 208 EDYIQQRGVKREEPSNNDPENDS 230
+ +++ V +EE ++D E S
Sbjct: 351 KPKVERLMVLKEEQEDSDMEESS 373
>gi|344273483|ref|XP_003408551.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Loxodonta
africana]
Length = 871
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 99/253 (39%), Gaps = 72/253 (28%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L+ +G G + +
Sbjct: 171 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 226
Query: 59 -GSGMNTGTANPDVSSLM---------SLSSSSSYKG----CDRSFC------------I 92
G MN +A V S S YK C C I
Sbjct: 227 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPSNIEVRI 286
Query: 93 RMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVSI 135
K+ L++ K S GY RS+ + AL SD
Sbjct: 287 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYDYYHALDSD------------ 334
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 335 HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGI 394
Query: 196 EYENFIMDCCQLE 208
+ I Q E
Sbjct: 395 IQHDLIFSLQQTE 407
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 143 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 176
>gi|3769480|gb|AAC64519.1| single-minded protein [Drosophila melanogaster]
Length = 643
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------------GLSQGHGLASPGSANSEEG- 59
QVE+TG+S+F+Y H D E+ L L L LA + + G
Sbjct: 115 QVELTGNSIFEYYHNYDQDEMNAILSLHPHINQHPIEKTFFLRMKCVLAKRNAGLTTSGF 174
Query: 60 -----SGMNTGTANPD--------------VSSLMSLSSS--SSYKGCDRSFCIRMKSTL 98
SG PD V+ SL SS + K F R K L
Sbjct: 175 KVIHCSGYLKARIYPDRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAK--L 232
Query: 99 TKRGCHFKS-----SGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTH 153
+ F + +GY D L + YI + + S ++ KGQV T
Sbjct: 233 DMKLIFFDARVSQLTGYEPQD-----LIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTK 287
Query: 154 YYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQ 213
YYR + K GG+ WVQS AT+V +S+++ E I+ VNYV+S RE ++ +++ Q
Sbjct: 288 YYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEI-------Q 340
Query: 214 RGVKREEP 221
GV + EP
Sbjct: 341 TGVVKREP 348
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLT 152
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++ G +
Sbjct: 67 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL--TGNSIF 124
Query: 153 HYY 155
YY
Sbjct: 125 EYY 127
>gi|41055377|ref|NP_956699.1| hypoxia-inducible factor 3-alpha [Danio rerio]
gi|32451899|gb|AAH54582.1| Hypoxia-inducible factor 1, alpha subunit, like [Danio rerio]
Length = 571
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 52/263 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGL-----ASPGSANSEEGSGMNT 64
I Q+E+ G SV++++H D EL + L G+S+ + S + G +N
Sbjct: 64 ITQLELLGQSVYEFVHPCDQEELRDILATRPGVSKKKTMEHNFFLRMKSTLTHTGRTVNI 123
Query: 65 GTA--------------------NPDVSSLMSL-------SSSSSYKGCDRSFCIRMKST 97
+A +P S ++L SS + +F R
Sbjct: 124 KSATWKVLHCTGHMQPFSGDDENSPSAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHNLD 183
Query: 98 LTKRGCHFKSS---GYRSLDGF---AFALGSDGRFLYISETVSIYLGLSQWQVINKGQVL 151
LT C + + GY+ D AF F ++S ++ I + +KGQV
Sbjct: 184 LTYTQCDGRVTELVGYQPDDLIGRSAFEFFHALDFDHVSRSLHI--------LFSKGQVC 235
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD----CCQL 207
T YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E ++ + C +
Sbjct: 236 TGQYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEQDVVFSLEQTCEKP 295
Query: 208 EDYIQQRGVKREEPSNNDPENDS 230
+ +++ V +EE ++D E S
Sbjct: 296 KPKVERLMVLKEEQEDSDMEESS 318
>gi|449270823|gb|EMC81472.1| Endothelial PAS domain-containing protein 1 [Columba livia]
Length = 874
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 46/245 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 123 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGPGFGKKSKEMSTERDFFMRMKCTVTNRG 182
Query: 60 SGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----L 113
+N +A V L Y C + C + LT + + S L
Sbjct: 183 RTVNLKSATWKV--LHCTGQVKVYNTCPPHTLCGYKEPLLTCLIIMCEPIQHPSNIDIPL 240
Query: 114 DGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINK 147
D F D +F Y I+E + + LG S ++ + K
Sbjct: 241 DSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCTK 300
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV+T YR++ K+GGY W+++ TV+ +++N Q I+CVNYV+S E + + Q
Sbjct: 301 GQVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIVCVNYVLSEIEKNDIVFSMDQT 360
Query: 208 EDYIQ 212
E +
Sbjct: 361 ESLFK 365
>gi|147904360|ref|NP_001085564.1| MGC80468 protein [Xenopus laevis]
gi|49115150|gb|AAH72936.1| MGC80468 protein [Xenopus laevis]
Length = 859
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 44/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGM-------NT 64
+ QVE+TG S+FD+ H DH E+ E L + G G + AN+E M N
Sbjct: 121 LTQVELTGLSIFDFTHPCDHDEIRENLSMKTGLGSGKKN-KEANTEHDFFMRMKCTVTNR 179
Query: 65 G-TANPDVSSLMSLSSSSSYKGCD----RSFCIRMKSTLTK-----RGCHFKSSGYRSLD 114
G T N ++ L + K + S C + L+ + S+ LD
Sbjct: 180 GRTVNLKSATWKVLHCTGHVKAYNSYHPHSLCGYKEPILSCLIMMCQPIQHPSNIDIPLD 239
Query: 115 GFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINKG 148
F D +F Y I+E + + LG S ++ + KG
Sbjct: 240 SKTFLSRHSMDMKFSYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCTKG 299
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
QV+T YR++ K+GGY WV++ TV+ +++N+ Q I+CVNYV+S E + + Q E
Sbjct: 300 QVVTGQYRMLAKHGGYLWVETQGTVIYNTRNSQPQCIVCVNYVLSEIEKNDVVFSMDQTE 359
Query: 209 DYIQ 212
+
Sbjct: 360 SLFK 363
>gi|348541225|ref|XP_003458087.1| PREDICTED: hypothetical protein LOC100710360 [Oreochromis
niloticus]
Length = 1036
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 93/257 (36%), Gaps = 102/257 (39%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIH +DH E+ L L + H P+
Sbjct: 116 QVELTGNSIFEYIHPSDHDEMTAVLSLHQAPQHHFL-------------------PEYE- 155
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+RSF +RMK L KR GY+ +
Sbjct: 156 ------------IERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKVRQYMVDMVLYES 203
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+ F F D + +++ V+ G +I+K
Sbjct: 204 CYQTVGLVAVGHSLPPSGITEIKLHSNMFMFRASLDFKLIFLDMRVAELTGYEPQDLIDK 263
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T YYRL++K+GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHACDIFHLRYAHHLLLVKGQVTTKYYRLLSKHGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENF 200
I+ VNYV++ E +
Sbjct: 324 CIVSVNYVLTDIERKEL 340
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|1389891|gb|AAC52730.1| hypoxia-inducible factor 1 alpha [Mus musculus]
Length = 822
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 101/274 (36%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+ G SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELAGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + + Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLLFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|449496328|ref|XP_002194260.2| PREDICTED: endothelial PAS domain-containing protein 1 [Taeniopygia
guttata]
Length = 878
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 44/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G G S ++E M +
Sbjct: 148 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGPGFGKKS-KEMSTERDFFMRMKCTVTNR 206
Query: 72 SSLMSLSSSS-----------SYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----LD 114
++L S++ Y C + C + LT + + S LD
Sbjct: 207 GRTVNLKSATWKVLHCTGQVKVYNTCPPHTLCGYKEPLLTCLIIMCEPIQHPSNIDIPLD 266
Query: 115 GFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VINKG 148
F D +F Y I+E + + LG S ++ + KG
Sbjct: 267 SKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSESMTKSHQNLCTKG 326
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
QV+T YR++ K+GGY W+++ TV+ +++N Q I+CVNYV+S E + + Q E
Sbjct: 327 QVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIVCVNYVLSEIEKNDVVFSMDQTE 386
Query: 209 DYIQ 212
+
Sbjct: 387 SLFK 390
>gi|46048879|ref|NP_990138.1| endothelial PAS domain-containing protein 1 [Gallus gallus]
gi|5051910|gb|AAD38358.1|AF129813_1 endothelial PAS domain protein 1 [Gallus gallus]
Length = 867
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 101/247 (40%), Gaps = 50/247 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G S E
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKNGPGFGKKNKEMSTERDFFMRMKCTVTN 178
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y C + C + LT + + S
Sbjct: 179 RGRTVNLKSATWKV--LHCTGQVKVYNTCPPHTLCGYKEPLLTCLIIMCEPIQHPSNIDI 236
Query: 113 -LDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------VI 145
LD F D +F Y I+E + + LG S ++ +
Sbjct: 237 PLDSKTFMSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLC 296
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV+T YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + +
Sbjct: 297 TKGQVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIEKNDIVFSMD 356
Query: 206 QLEDYIQ 212
Q E +
Sbjct: 357 QTESLFK 363
>gi|6644408|gb|AAF21052.1|AF212989_1 hypoxia-inducible factor 2 alpha [Coturnix coturnix]
Length = 870
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 100/247 (40%), Gaps = 50/247 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G S E
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKNGPGFGKKNKEMSTERDFFMRMKCTVTN 178
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y C + C + LT + + S
Sbjct: 179 RGRTVNLKSATWKV--LHCTGQVKVYNTCPPHTLCGYKEPLLTCLIIMCEPIQHPSNIDI 236
Query: 113 -LDGFAFAL--GSDGRFLY----ISETV----------SIY----------LGLSQWQVI 145
LD F D +F Y I+E + S+Y + S +
Sbjct: 237 PLDSKTFMSRHSMDMKFTYCDDRITELIGYHPEELLGRSVYEFYHALDSENMTKSHQNLC 296
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV+T YR++ K+GGY W+++ TV+ +++N Q IICVNYV+S E + +
Sbjct: 297 TKGQVVTGQYRMLAKHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEIEKNDVVFSMD 356
Query: 206 QLEDYIQ 212
Q E +
Sbjct: 357 QTESLFK 363
>gi|51921791|gb|AAU14021.1| hypoxia-inducible factor 1 alpha subunit [Spermophilus
tridecemlineatus]
Length = 821
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHGLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|348537940|ref|XP_003456450.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Oreochromis
niloticus]
Length = 677
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 47/252 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQG---------HGLASPGSANSEEGSGM 62
I Q+E+ G S++D++H D EL + L LS+ + S + G +
Sbjct: 134 ITQLELLGQSIYDFVHPCDQEELRDLLTPRLSKKSRTEQTSERNFFVRMKSTLTTRGRTV 193
Query: 63 N-------------------TGTANPDVSSLMSL-------SSSSSYKGCDRSFCIRMKS 96
N +G+A+P +M+L SS + +F R
Sbjct: 194 NIKSATWKVLHCTGQIRPFGSGSASPPAGRVMTLLCEPIPHPSSVEFPLDTCTFLTRHSM 253
Query: 97 TLTKRGCHFKSS---GYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTH 153
L C + + GY+ D +G G F ++ S ++ S +++KGQV T
Sbjct: 254 DLRFTHCEGRVAELVGYKPDD----LIGRSG-FEFLHALDSDHINKSLHTLLSKGQVSTS 308
Query: 154 YYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQ 213
YR + NGGY W ++ ATV+ +SK + I+C+N+++S E + I Q +
Sbjct: 309 QYRFLANNGGYVWAETQATVLYNSKTSQPDAIVCLNFILSSVEQPDVIFSMEQ----TRC 364
Query: 214 RGVKREEPSNND 225
V + EP++ D
Sbjct: 365 SRVPKIEPADED 376
>gi|307198404|gb|EFN79346.1| Single-minded-like protein 1 [Harpegnathos saltator]
Length = 774
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 59/248 (23%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGL-SQGHGLASP-----GSANSEEG-------- 59
QVE+TG+S+F+YI+ D E+ L L S H P G E
Sbjct: 200 QVELTGNSIFEYIYPDDRNEMISMLNLPSNSPDHRFTYPPPNSRGEIELERAFLLRMKCI 259
Query: 60 -SGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----- 113
+ N G VS + S Y C + + +LT+ ++ G ++
Sbjct: 260 LAKRNAGL----VSEGYKVIHCSGYLKCVFDGPVEYEDSLTRNVGLIRTVGLLAVGHSLP 315
Query: 114 -----------DGFAFALGSDGRFLYISETVS------------------------IYLG 138
+ F F D + +++ V+ ++L
Sbjct: 316 TSSITEIKLHQNMFMFRASLDLKLIFLDARVAHLTGYDPPDLIEKTLYHYVHAADVVHLR 375
Query: 139 LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
+ ++ KGQV T YYR + KNGG+ W+QS T+V +S+++ I+ VNYV++ E
Sbjct: 376 QAHRLLLCKGQVTTRYYRFLTKNGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTAAENA 435
Query: 199 NFIMDCCQ 206
I++C Q
Sbjct: 436 GLILNCEQ 443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++S + + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 157 LESAIKELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 203
>gi|126697520|gb|ABO26717.1| hypoxia-inducible factor 1 alpha [Perca fluviatilis]
Length = 749
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I+
Sbjct: 294 LFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKQILS 353
Query: 204 CCQLEDYIQQRGVKREE 220
Q+ED + VK EE
Sbjct: 354 LEQIEDV---KPVKEEE 367
>gi|223648404|gb|ACN10960.1| Hypoxia-inducible factor 1 alpha [Salmo salar]
Length = 752
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ + +A+ SD +L + + KGQV T YR++ K GG+ WV++
Sbjct: 275 RSVYEYYYAMDSD------------HLMKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQ 322
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
ATV+ ++KN+ Q ++CVNYV+S E E ++ Q ED R VK+E
Sbjct: 323 ATVIYNNKNSQPQCVVCVNYVLSDIEEEKMMLSLEQTED---MRPVKKE 368
>gi|395529671|ref|XP_003766932.1| PREDICTED: hypoxia-inducible factor 3-alpha [Sarcophilus harrisii]
Length = 1015
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + +NGGY W Q+ ATV+ + ++++CV++V+S E ++
Sbjct: 618 LLSKGQAVTGQYRFLARNGGYLWTQTQATVISGGRGPQPESVVCVHFVLSRVEETGVVLS 677
Query: 204 CCQLEDYIQQ--RGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSE 261
Q E ++ R +R PS P+ DG ++ R L PP + + T
Sbjct: 678 LEQTEQPTRRPPRPAERGPPSEKSPQGPG------DGFDTPGPRILAFLKPPALSEATLA 731
Query: 262 GD 263
D
Sbjct: 732 AD 733
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 103 CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ LDGF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 413 CYLKA-----LDGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 450
>gi|158299100|ref|XP_319213.4| AGAP010058-PA [Anopheles gambiae str. PEST]
gi|157014206|gb|EAA14581.4| AGAP010058-PA [Anopheles gambiae str. PEST]
Length = 396
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 104/264 (39%), Gaps = 90/264 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVS- 72
QVE+TG+S+++YIH D E+A L L Q H P + ++ N+ T NP S
Sbjct: 137 QVELTGNSIYEYIHAYDQEEMASI--LALQQPH---HPLACSAPHNLSTNSATPNPTNSL 191
Query: 73 --------SLMSLSSSSSY--KGCD--RSFCIRMKSTLTKRGCHFKSSGYRSL------- 113
+ SL++ S Y C+ R+F +RM+ L KR SSGY+ +
Sbjct: 192 GTPWTGTFQVGSLATDSVYNEASCEAPRNFFLRMRCVLAKRNAGLTSSGYKVIHCSGYLK 251
Query: 114 -----------------------------------------DGFAFALGSDGRFLYISET 132
+ F F D + +Y+
Sbjct: 252 ARVFPHESLNTPGYCCVQNLGLVAVGHSLSPSAATEVKLQQNMFMFRASLDMKLIYLDAK 311
Query: 133 VSIYLG----------LSQW-------QVINKGQVL-------THYYRLMNKNGGYTWVQ 168
VS G L Q+ QV Q L T YYR + K GG+ WVQ
Sbjct: 312 VSQLTGYEPQDLIENTLYQYIHALDVVQVRQTHQTLLQKGQATTMYYRFLTKAGGWRWVQ 371
Query: 169 SCATVVCSSKNADEQNIICVNYVI 192
S AT+V +++++ I+ VNYV+
Sbjct: 372 SHATIVHNTRSSRPHCIVSVNYVL 395
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 101 RGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
R + K G ++LDGF F + DG+ YISET S++LGLSQ
Sbjct: 94 RAANIKELGSHLLQTLDGFIFVVAPDGKITYISETASVHLGLSQ 137
>gi|32469606|sp|O35800.1|HIF1A_RAT RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|2632131|emb|CAA70701.1| hypoxia-inducible factor 1 [Rattus norvegicus]
Length = 825
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPVRKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + +SS+ C L S+ L
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 237
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 238 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 297
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++K++ Q I+CVNYV+SG + I Q
Sbjct: 298 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKDSQPQCIVCVNYVVSGIIQHDLIFSLQQT 357
Query: 208 EDYIQ 212
E ++
Sbjct: 358 ESVLK 362
>gi|126697518|gb|ABO26716.1| hypoxia-inducible factor 1 alpha [Gymnocephalus cernuus]
Length = 748
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I+
Sbjct: 294 LFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKQILS 353
Query: 204 CCQLEDYIQQRGVKREE 220
Q+ED + VK EE
Sbjct: 354 LEQIEDV---KPVKDEE 367
>gi|327259020|ref|XP_003214336.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Anolis
carolinensis]
Length = 835
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 99/243 (40%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q ++TG SVFD+ H DH EL E L + +G G + E
Sbjct: 146 LTQFDLTGHSVFDFTHPCDHEELREML----THRNGPVKKGKEQNTERSFFLRMKCTLTS 201
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS---- 112
G +N +A V L Y C+ ++ C K +T + + S
Sbjct: 202 RGRTVNIKSATWKV--LHCTGHIRVYDNCNNQTVCGYKKPPMTCLVLICEPIPHPSNIEV 259
Query: 113 -LDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVIN----------------------- 146
LD F D +F Y E ++ +G +++
Sbjct: 260 PLDSKTFLSRHSLDMKFSYCDERITELIGYDPEELLGRSIYEYYHALDSDHLTKTHHDMF 319
Query: 147 -KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I
Sbjct: 320 AKGQVTTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVQGDLIFSLQ 379
Query: 206 QLE 208
Q E
Sbjct: 380 QTE 382
>gi|126697514|gb|ABO26714.1| hypoxia-inducible factor 1 alpha [Thymallus thymallus]
Length = 745
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ +SKN+ Q ++CVNYV+SG E E ++
Sbjct: 295 LFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNSKNSQPQCVVCVNYVLSGIEEEKMVLS 354
Query: 204 CCQLEDYIQQRGVKRE 219
Q E + VK+E
Sbjct: 355 LEQTEGMM---PVKKE 367
>gi|27807411|ref|NP_777150.1| endothelial PAS domain-containing protein 1 [Bos taurus]
gi|5019614|dbj|BAA78676.1| endothelial PAS domain protein 1/hypoxia-inducible factor-2 alpha
[Bos taurus]
Length = 870
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG 180
Query: 60 SGMNTGTAN-------PDVSSLMSLSSSSSYKGCDRSF--CIRMKSTLTKRGCHFKSSGY 110
+N +A V + SS GC C+ + + H
Sbjct: 181 RTVNLKSATWKVLHCTGQVKVYNNCPPHSSLCGCKEPLLSCLIIMCEPIQHPSHMDIP-- 238
Query: 111 RSLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 239 --LDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNL 296
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 297 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 356
Query: 205 CQLEDYIQ 212
Q E +
Sbjct: 357 DQTESLFK 364
>gi|410931985|ref|XP_003979375.1| PREDICTED: single-minded homolog 2-like [Takifugu rubripes]
Length = 694
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVS- 72
QVE+TG+S+F+YIH +DH E+ L L H + A M A +
Sbjct: 116 QVELTGNSIFEYIHPSDHDEMTAVLSLCQPAQHHVTQEYEAERSFFLRMKCVLAKRNAGL 175
Query: 73 -----SLMSLSSSSSYKGCDRSFCIR----MKSTLTKRGCHFKSSGYRSL----DGFAFA 119
++ S + C + L G SG + + F F
Sbjct: 176 TCGGYKVIHCSGYLKVRQCTLDLALYESCYQTVGLVAVGHSLPPSGVTEIKLFSNMFMFR 235
Query: 120 LGSDGRFLYISETVSIYLGLSQWQVINK------------------------GQVLTHYY 155
D + +++ V+ G +I K GQV T YY
Sbjct: 236 ASLDFKLIFLDTRVAELTGFEPQDLIEKTLYHHVHACDIFHLRYAHHLLLVKGQVTTKYY 295
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
R+++K+GG+ WVQS AT+V +S+++ I+ VNYV+S E
Sbjct: 296 RMLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLSAAE 336
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|348534841|ref|XP_003454910.1| PREDICTED: single-minded homolog 1-A-like [Oreochromis niloticus]
Length = 754
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 102/257 (39%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ + + H P ++ + M
Sbjct: 116 QVELTGNSIYEYIHPADHDEM-----IAVLTAH---QPYHSHFVQEYEM----------- 156
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------------------SLDG 115
+RSF +RMK L KR GY+ DG
Sbjct: 157 -------------ERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG 203
Query: 116 ----------------------------FAFALGSDGRFLYISETVS------------- 134
F F D + +++ VS
Sbjct: 204 CYQNIGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVSELTGYEPQDLIEK 263
Query: 135 -----------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
+L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHSCDCFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENF 200
I+ VNYV++ EY+
Sbjct: 324 CIVSVNYVLTETEYKGL 340
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|148745435|gb|AAI42230.1| Endothelial PAS domain protein 1 [Bos taurus]
gi|296482559|tpg|DAA24674.1| TPA: endothelial PAS domain protein 1 [Bos taurus]
Length = 870
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG 180
Query: 60 SGMNTGTAN-------PDVSSLMSLSSSSSYKGCDRSF--CIRMKSTLTKRGCHFKSSGY 110
+N +A V + SS GC C+ + + H
Sbjct: 181 RTVNLKSATWKVLHCTGQVKVYNNCPPHSSLCGCKEPLLSCLIIMCEPIQHPSHMDIP-- 238
Query: 111 RSLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 239 --LDSKTFLSRHSMDMKFTYCDDRITELVGYHPQELLGRSAYEFYHALDSENMTKSHQNL 296
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 297 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 356
Query: 205 CQLE 208
Q E
Sbjct: 357 DQTE 360
>gi|38374005|gb|AAR19225.1| hypoxia-inducible factor 1 alpha subunit [Canis lupus familiaris]
Length = 786
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 102 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 157
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 158 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 216
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 217 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 265
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I CVNYV+SG
Sbjct: 266 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIGCVNYVVSG 324
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 325 IIQHDLIFSLQQTE 338
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 74 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 107
>gi|440906166|gb|ELR56466.1| Endothelial PAS domain-containing protein 1 [Bos grunniens mutus]
Length = 873
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 124 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG 183
Query: 60 SGMNTGTAN-------PDVSSLMSLSSSSSYKGCDRSF--CIRMKSTLTKRGCHFKSSGY 110
+N +A V + SS GC C+ + + H
Sbjct: 184 RTVNLKSATWKVLHCTGQVKVYNNCPPHSSLCGCKEPLLSCLIIMCEPIQHPSHMDIP-- 241
Query: 111 RSLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 242 --LDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNL 299
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 300 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 359
Query: 205 CQLE 208
Q E
Sbjct: 360 DQTE 363
>gi|355686181|gb|AER97972.1| endothelial PAS domain protein 1 [Mustela putorius furo]
Length = 859
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 47/246 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G G S ++E M
Sbjct: 112 LTQVELTGHSIFDFTHPCDHEEIRENLSLKSGSGFGKKS-KDTSTERDFFMRMKCTVTSR 170
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
++L S++ +K + +++ S+ G C +K L
Sbjct: 171 GRTVNLKSAT-WKVLHCTGQVKVYSSCPPHGGLCSYKEPLLSCLILMCEPIQHPSHMDIP 229
Query: 114 ---DGFAFALGSDGRFLY----ISETVSIY----LGLSQWQ----------------VIN 146
F D +F Y I+E V + LG S ++ +
Sbjct: 230 LDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCT 289
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + + Q
Sbjct: 290 KGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMDQ 349
Query: 207 LEDYIQ 212
E +
Sbjct: 350 TESLFK 355
>gi|345326320|ref|XP_001512322.2| PREDICTED: single-minded homolog 2-like [Ornithorhynchus anatinus]
Length = 849
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ YL + ++ KGQV T YYRL+ K GG+ WVQSCAT+V +S+++ I+ VNYV++
Sbjct: 338 AFYLRYAHHLLLVKGQVTTKYYRLLAKRGGWLWVQSCATIVHNSRSSRPHCIVSVNYVLT 397
Query: 194 GREYENF 200
EY+
Sbjct: 398 DVEYKEL 404
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 150 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 183
>gi|148228022|ref|NP_001090889.1| endothelial PAS domain-containing protein 1 [Sus scrofa]
gi|125634700|gb|ABN48508.1| hypoxia-inducible factor 2 alpha [Sus scrofa]
Length = 871
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG 180
Query: 60 SGMNTGTAN-------PDVSSLMSLSSSSSYKGCDRSF--CIRMKSTLTKRGCHFKSSGY 110
+N +A V + SS GC C+ + + H
Sbjct: 181 RTVNLKSATWKVLHCTGQVKVYNNCPPHSSLCGCKEPLLSCLIIMCEPIQHPSHMDIP-- 238
Query: 111 RSLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E + + LG S ++ +
Sbjct: 239 --LDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNL 296
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 297 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 356
Query: 205 CQLE 208
Q E
Sbjct: 357 DQTE 360
>gi|185134444|ref|NP_001117760.1| hypoxia-inducible factor 1-alpha [Oncorhynchus mykiss]
gi|32469773|sp|Q98SW2.1|HIF1A_ONCMY RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|13561506|gb|AAK30364.1|AF304864_1 hypoxia-inducible factor 1 alpha [Oncorhynchus mykiss]
Length = 766
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVNYV+SG E E ++
Sbjct: 296 LFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKMMLS 355
Query: 204 CCQLED 209
Q ED
Sbjct: 356 LEQTED 361
>gi|407316770|gb|AFU07567.1| hypoxia-inducible factor 2 alpha subunit [Polyodon spathula]
Length = 852
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G + N+E M +
Sbjct: 119 LTQVELTGHSIFDFTHPCDHEEMRENLSLRNGLGKKIKD---LNTERDFFMRMKCTVTNR 175
Query: 72 SSLMSLSSSS-----------SYKGCD-RSFCIRMKSTLTKRGCHFKSSGYRS-----LD 114
++L S+S Y C + C + LT + + S LD
Sbjct: 176 GRTVNLKSASWKVLHCTGQVKVYNSCPPHTLCGFKEPPLTCVVMICEPIPHPSNIDMPLD 235
Query: 115 GFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NKG 148
F D +F Y E ++ +G +++ KG
Sbjct: 236 SKTFLSRHTMDLKFTYCDERITELMGYCPEELLGRSVYEFYHALDSDSMTKSHQNLCTKG 295
Query: 149 QVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
Q ++ YR++ K+GGY W+++ TV+ +++N+ Q I+CVN+V+S E + I Q E
Sbjct: 296 QAVSSQYRMLAKHGGYVWLETQGTVIYNTRNSQPQCIVCVNFVLSDIEENSVIFSLDQTE 355
Query: 209 DYIQ 212
++
Sbjct: 356 SLLK 359
>gi|67970146|dbj|BAE01417.1| unnamed protein product [Macaca fascicularis]
Length = 826
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H H E+ E L+ +G ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCGHEEMREM----LTHRNGPV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHGMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|71911731|gb|AAZ52828.1| hypoxia inducible factor 1 alpha [Pachycara brachycephalum]
Length = 747
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++C+N+V+SG + E I+
Sbjct: 292 LFTKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCLNFVLSGIQEEKLILS 351
Query: 204 CCQLED 209
Q+ED
Sbjct: 352 LEQIED 357
>gi|288887162|gb|ADC55889.1| hypoxia inducible factor-1alpha [Gobionotothen gibberifrons]
Length = 519
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 45/240 (18%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANS----------EEGSG 61
+ Q ++TG SVFD+IH D EL ++ + + P +A S G
Sbjct: 92 LAQFDLTGYSVFDFIHPCDQEEL-REMLVHKTGSKKTKEPNTARSFFLRMKCTLTSRGRT 150
Query: 62 MNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKS------TLTKRGCHFKSSGYRSLDG 115
+N +A V L Y GC K L S+ LD
Sbjct: 151 VNVKSAAWKV--LHCSGHVRVYDGCTEETPNEHKEPPVPYLVLICDPIQHPSNIEVPLDT 208
Query: 116 FAFAL--GSDGRFLYISETVSIYLGLSQWQVIN------------------------KGQ 149
F D +F Y E ++ +G ++N KGQ
Sbjct: 209 KTFLSRHTMDMKFTYCDERITELMGYDPDNLLNRSVYEYYHAMDSDHLTKTHHDLFAKGQ 268
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
V T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E ++ Q+ED
Sbjct: 269 VSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLVLSLEQMED 328
>gi|149051448|gb|EDM03621.1| hypoxia inducible factor 1, alpha subunit, isoform CRA_a [Rattus
norvegicus]
Length = 521
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 123 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTS 178
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + +SS+ C L S+ L
Sbjct: 179 RGRTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 238
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 239 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 298
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 299 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 358
Query: 208 EDYIQ 212
E ++
Sbjct: 359 ESVLK 363
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|350585329|ref|XP_003127298.3| PREDICTED: LOW QUALITY PROTEIN: hypoxia-inducible factor
3-alpha-like [Sus scrofa]
Length = 776
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 384 YIHALDSDAVGQSIHALLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 443
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R ++R PS D N D ++ R
Sbjct: 444 VHFLISQVEETEVVLSLEQTERH-SRRPIQRGTPSQEDAPNPG------DSLDTSGPRIL 496
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 497 AFLHPPTLSEAALAAD 512
>gi|345315439|ref|XP_001510942.2| PREDICTED: hypoxia-inducible factor 1-alpha-like [Ornithorhynchus
anatinus]
Length = 814
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 99/243 (40%), Gaps = 52/243 (21%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+L L+ +G G + E
Sbjct: 134 LTQFELTGHSVFDFTHPCDH----EELREMLTHRNGSVKKGREQNTERSFFLRMKCTLTS 189
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGC-DRSFCIRMKSTLTK-----RGCHFKSSGYR 111
G +N +A V L Y C +++ C K +T S+
Sbjct: 190 RGRTVNIKSAAWKV--LHCTGHIRVYDACSNQAQCGYKKPPMTCLVLICEPILHPSNIEV 247
Query: 112 SLDGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------ 145
LD F D +F Y E ++ +G +++
Sbjct: 248 PLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMF 307
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCC 205
KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG ++ I
Sbjct: 308 TKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLG 367
Query: 206 QLE 208
Q E
Sbjct: 368 QTE 370
>gi|194386742|dbj|BAG61181.1| unnamed protein product [Homo sapiens]
Length = 234
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 17 MTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLM 75
MTGSSVFDYIH DH+E+ EQLGL P ++S S T P++ +SL
Sbjct: 1 MTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLT 58
Query: 76 SLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+ SS + +RSF +RMKSTLTKRG H K+SGY+ +
Sbjct: 59 KVPPSSLVQ--ERSFFVRMKSTLTKRGLHVKASGYKVI 94
>gi|87204421|gb|ABD32158.1| hypoxia-inducible factor 1 alpha [Micropogonias undulatus]
Length = 752
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I+
Sbjct: 294 LFAKGQVCTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILS 353
Query: 204 CCQLED 209
Q ED
Sbjct: 354 LEQTED 359
>gi|301775376|ref|XP_002923099.1| PREDICTED: hypoxia-inducible factor 3-alpha-like [Ailuropoda
melanoleuca]
Length = 670
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 278 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRAPQSESIVC 337
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R ++R PS D N D ++ R
Sbjct: 338 VHFLISRVEETGVVLSLEQTERH-SRRPIQRGTPSQKDAPNSG------DSLDASGPRIL 390
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 391 AFLHPPALSEAALAAD 406
>gi|157502175|ref|NP_001098812.1| hypoxia-inducible factor 3-alpha [Bos taurus]
gi|157279353|gb|AAI53227.1| HIF3A protein [Bos taurus]
gi|296477442|tpg|DAA19557.1| TPA: hypoxia inducible factor 3, alpha subunit [Bos taurus]
Length = 669
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 277 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 336
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R V+R PS D N DR D SG R
Sbjct: 337 VHFLISRVEETEVVLSLEQTERH-SRRHVQRGSPSQKDAPN---PGDRLD--TSG-PRIL 389
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 390 AFLHPPALSEAALAAD 405
>gi|348531168|ref|XP_003453082.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Oreochromis
niloticus]
Length = 766
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG
Sbjct: 286 HLTKTHHNLFAKGQVCTGQYRMLAKKGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGI 345
Query: 196 EYENFIMDCCQLEDYIQQRGVKRE 219
+ E I+ Q D + VK E
Sbjct: 346 QEEKLILSVKQTADV---KPVKEE 366
>gi|148704554|gb|EDL36501.1| hypoxia inducible factor 1, alpha subunit, isoform CRA_b [Mus
musculus]
Length = 904
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I
Sbjct: 362 MFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFS 421
Query: 204 CCQLEDYIQ 212
Q E ++
Sbjct: 422 LQQTESVLK 430
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 162 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 195
>gi|449670512|ref|XP_002167197.2| PREDICTED: hypoxia-inducible factor 1-alpha-like [Hydra
magnipapillata]
Length = 518
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 105/279 (37%), Gaps = 82/279 (29%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q++M G S + Y+ D LAEQ+G + G SE + NP
Sbjct: 113 QLDMMGDSFYKYVQPCDQATLAEQIGGQVPLEDMEIFDGLFCSEAAPCLQ----NPKKKI 168
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL----------------DG 115
L +S RSF +RMKSTLT RG + +S YR + +G
Sbjct: 169 CDELKNSPY-----RSFFLRMKSTLTSRGKNVNINASTYRVVHCTGTIKNYKTKLDLNEG 223
Query: 116 FAFALGSDGRFLYISETVS----------------------------------------- 134
F L + G L S +V
Sbjct: 224 FTQCLLAIGNPLLTSTSVEFPIDRKTFISKHSLDMKIFEMDNITSSILGYSDKEMLGYSW 283
Query: 135 -IYLGLSQWQVIN--------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
IY+ L V+ KGQ ++ YYR+++ NGG+ W+Q+ VV N Q I
Sbjct: 284 YIYIHLCDTDVVKACHETLLKKGQSVSAYYRVLHLNGGWLWLQTIGNVVYLESNGQPQYI 343
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNN 224
C++ V+SG E E ++ QL+ VKR+ NN
Sbjct: 344 FCMHTVVSGLEAEGTVLSTKQLD-----VSVKRKHEINN 377
>gi|350585333|ref|XP_003356031.2| PREDICTED: hypoxia-inducible factor 3-alpha [Sus scrofa]
Length = 385
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 214 YIHALDSDAVGQSIHALLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 273
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R ++R PS D N D ++ R
Sbjct: 274 VHFLISQVEETEVVLSLEQTERH-SRRPIQRGTPSQEDAPNPG------DSLDTSGPRIL 326
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 327 AFLHPPTLSEAALAAD 342
>gi|124054287|gb|ABM89354.1| HIF1A [Pongo pygmaeus]
Length = 439
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ + AL SD +L + + KGQV T YR++ K GGY WV++
Sbjct: 15 RSIYEYYHALDSD------------HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQ 62
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
ATV+ ++KN+ Q I+CVNYV+SG + I Q E
Sbjct: 63 ATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 100
>gi|410954769|ref|XP_003984034.1| PREDICTED: LOW QUALITY PROTEIN: endothelial PAS domain-containing
protein 1 [Felis catus]
Length = 907
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 101/248 (40%), Gaps = 51/248 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G G S E
Sbjct: 161 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKNGSGFGKKGKDMSTERDFFMRMKCTVTN 218
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCDR--SFCIRMKSTLTKRGCHFKSSGYRS--- 112
G +N +A V L Y C S C + L+ + + S
Sbjct: 219 RGRTVNLKSATWKV--LHCTGQVKVYNSCPPHSSLCSFKEPLLSCLIIMCEPIQHPSHMD 276
Query: 113 --LDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E + + LG S ++ +
Sbjct: 277 IPLDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNL 336
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 337 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 396
Query: 205 CQLEDYIQ 212
Q E +
Sbjct: 397 DQTESLFK 404
>gi|120419452|gb|ABM21545.1| endothelial PAS domain protein 1 [Bos taurus]
Length = 462
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------G 59
+ QVE+TG S+FD+ H DH E+ E L L G G S + + G
Sbjct: 122 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTNRG 181
Query: 60 SGMNTGTAN-------PDVSSLMSLSSSSSYKGCDRSF--CIRMKSTLTKRGCHFKSSGY 110
+N +A V + SS GC C+ + + H
Sbjct: 182 RTVNLKSATWKVLHCTGQVKVYNNCPPHSSLCGCKEPLLSCLIIMCEPIQHPSHMDIP-- 239
Query: 111 RSLDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 240 --LDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNL 297
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 298 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 357
Query: 205 CQLE 208
Q E
Sbjct: 358 DQTE 361
>gi|115920139|ref|XP_782984.2| PREDICTED: uncharacterized protein LOC577676 [Strongylocentrotus
purpuratus]
Length = 820
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 102/265 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L H P +
Sbjct: 115 QVELTGNSIYEYIHPADHDEMT-----ALLTAH---------------------QPYHTH 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------DG 115
L++ Y+ +R F +RMK L KR S GY+ + DG
Sbjct: 149 LLT-----DYE-LERQFFLRMKCVLAKRNAGLTSGGYKVIHCHGYLKIKQYTMDIAPYDG 202
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
F F D + +++ V++ G +I K
Sbjct: 203 CYQNVGLVAIGHSLPPSSLTEVKLYNNMFMFRASLDMKLIFLDGKVAVLTGYEPQDLIEK 262
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQ T Y+R ++K+GG+ W+QS AT+V +S+++
Sbjct: 263 TIYHFVHPMDIMHIRYAHHTLLLKGQATTRYFRFLSKHGGWVWMQSAATIVHNSRSSRPH 322
Query: 184 NIICVNYVISGREYENFIMDCCQLE 208
I+ VN V+S E + I+ QL+
Sbjct: 323 CIVSVNTVLSKMEEKELILQFDQLQ 347
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 85 QTLDGFIFVVAPDGKIIYISETASVHLGLSQVEL 118
>gi|410982678|ref|XP_003997675.1| PREDICTED: hypoxia-inducible factor 3-alpha [Felis catus]
Length = 600
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I
Sbjct: 206 YEYIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESI 265
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSR 245
+CV+++IS E ++ Q E + +R +R PS + D+PD D ++ R
Sbjct: 266 VCVHFLISRVEETGVVLSLEQTERH-SRRPAQRGTPS----QKDAPDPG--DSLDASGPR 318
Query: 246 NHDHLSPPDIEDGTSEGD 263
L PP + + T D
Sbjct: 319 ILAFLHPPALSEATLAAD 336
>gi|355755960|gb|EHH59707.1| hypothetical protein EGM_09889, partial [Macaca fascicularis]
Length = 665
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQ +T YR + +NGGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLTKGQAVTGQYRFLARNGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + ++ SR L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------NSLDAPGSRILAFLHPPSLSEAALAAD 405
>gi|109083876|ref|XP_001098939.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 5 [Macaca
mulatta]
gi|402876373|ref|XP_003901946.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Papio
anubis]
gi|383409709|gb|AFH28068.1| hypoxia-inducible factor 1-alpha isoform 2 [Macaca mulatta]
Length = 735
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|440907533|gb|ELR57674.1| Hypoxia-inducible factor 3-alpha, partial [Bos grunniens mutus]
Length = 660
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 268 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 327
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R V+R PS D N DR D SG R
Sbjct: 328 VHFLISRVEETEVVLSLEQTERH-SRRHVQRGSPSQKDAPN---PGDRLD--TSG-PRIL 380
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 381 AFLHPPALSEAALAAD 396
>gi|297277407|ref|XP_001108464.2| PREDICTED: hypoxia-inducible factor 3-alpha-like isoform 1 [Macaca
mulatta]
Length = 669
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + +NGGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARNGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + ++ SR L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------NSLDAPGSRILAFLHPPSLSEAALAAD 405
>gi|74275377|gb|ABA02179.1| hypoxia-inducible factor 1 alpha [Gallus gallus]
Length = 525
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG ++ I
Sbjct: 24 MFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFS 83
Query: 204 CCQLE 208
Q E
Sbjct: 84 LGQTE 88
>gi|395843416|ref|XP_003794481.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Otolemur
garnettii]
Length = 736
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNNNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|126697510|gb|ABO26712.1| hypoxia-inducible factor 1 alpha [Acipenser gueldenstaedtii]
Length = 784
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 14/91 (15%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ +T YR++ K GG+ WV++ ATV+ ++KN+ Q I+CVNYV+SG E+ +
Sbjct: 295 LFAKGQAITGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVGEDLVFS 354
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
Q E+ ++ +SPDAD
Sbjct: 355 LGQTENVLKP--------------VESPDAD 371
>gi|90074851|dbj|BAE87099.1| Single minded [Achaearanea tepidariorum]
Length = 755
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 94/264 (35%), Gaps = 98/264 (37%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG S+++YI DH E+A L L H E
Sbjct: 117 QVELTGDSIYEYIDPTDHDEMAAVLSLQTPPVHPQIPAPQGEFE---------------- 160
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKS--------SGYRSL------------ 113
+R F +RMK L KR S SGY +
Sbjct: 161 ------------LERLFFVRMKCVLAKRNAGLTSGGYKVIHCSGYLKVQRYNVEAPPYDS 208
Query: 114 --------------------------DGFAFALGSDGRFLYISETVS------------- 134
+ F F D R +++ V+
Sbjct: 209 CYQNLGLVAVGHSLPPSAITEIKMYSNMFMFRANMDLRLIFLDARVTNLTGYQPQDLIEK 268
Query: 135 -----------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
+ + S +++KGQV T YYR + K+GG+ W+QS ATVV +++++
Sbjct: 269 TLYHYIHASDCVQMRYSHETLLHKGQVTTKYYRFLTKDGGWIWMQSYATVVHNTRSSRPH 328
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV+ +E E+ ++ Q+
Sbjct: 329 CIVSVNYVLGKQEGESLQLEMEQI 352
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++S + + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 74 LESAIKELGSHL----LQTLDGFVFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|296215222|ref|XP_002754036.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 3 [Callithrix
jacchus]
Length = 735
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|338191512|gb|AEI84585.1| HIF-alpha [Cynoglossus semilaevis]
Length = 735
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG
Sbjct: 285 HLNKTHHSLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGI 344
Query: 196 EYENFIMDCCQLED 209
+ E I+ Q ED
Sbjct: 345 QEEKLILSLEQTED 358
>gi|281353701|gb|EFB29285.1| hypothetical protein PANDA_012188 [Ailuropoda melanoleuca]
Length = 603
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 270 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRAPQSESIVC 329
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R ++R PS D N D ++ R
Sbjct: 330 VHFLISRVEETGVVLSLEQTERH-SRRPIQRGTPSQKDAPNSG------DSLDASGPRIL 382
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + D
Sbjct: 383 AFLHPPALSEAALAAD 398
>gi|403264369|ref|XP_003924458.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 735
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|332237270|ref|XP_003267828.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 2 [Nomascus
leucogenys]
Length = 735
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGREQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|407316792|gb|AFU07578.1| hypoxia-inducible factor 3 alpha subunit, partial [Lepisosteus
platostomus]
Length = 483
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L S +++KGQV T +YR + KNGG+ W ++ ATV+ + K + + ++C+N+++SG
Sbjct: 162 HLTKSLHTLLSKGQVTTSHYRFLAKNGGFVWAETQATVIYNGKTSQPEGVVCLNFILSGV 221
Query: 196 EYENFIMDCCQLEDYIQQRGVKREE 220
E + + Q E +Q + +E
Sbjct: 222 EQPDVVFSVEQTERLLQPKPEPEDE 246
>gi|343055501|gb|AEL79592.1| hypoxia-inducible factor 1 alpha subunit [Ovis ammon]
Length = 452
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ + AL SD +L + + KGQV T YR++ K GGY W+++
Sbjct: 55 RSIYEYYHALDSD------------HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQ 102
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
ATV+ ++KN+ Q I+CVNYV+SG + I+ Q E
Sbjct: 103 ATVIYNTKNSQPQCIVCVNYVVSGIIQHDLILSLQQTE 140
>gi|297277409|ref|XP_002801349.1| PREDICTED: hypoxia-inducible factor 3-alpha-like isoform 2 [Macaca
mulatta]
Length = 667
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + +NGGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARNGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + ++ SR L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPG------NSLDAPGSRILAFLHPPSLSEAALAAD 403
>gi|397493289|ref|XP_003817541.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Pan
paniscus]
Length = 669
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 405
>gi|407316748|gb|AFU07556.1| hypoxia-inducible factor 1 alpha subunit [Acipenser sinensis]
Length = 763
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 14/91 (15%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ +T YR++ K GG+ WV++ ATV+ ++KN+ Q I+CVNYV+SG E+ +
Sbjct: 295 LFAKGQAITGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVGEDLVFS 354
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
Q E+ ++ +SPDAD
Sbjct: 355 LGQTENVLKPV--------------ESPDAD 371
>gi|351713876|gb|EHB16795.1| Hypoxia-inducible factor 1 alpha [Heterocephalus glaber]
Length = 832
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 126 LTQFELTGHSVFDFTHPCDH----EEMKEMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 181
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 182 RGRTMNIKSATWKVLHCTGHIHVYDTNNNQSQCGYKKPPMTCLVLICEPIPHPS-NIEIP 240
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 241 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 289
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 290 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 348
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 349 IIQHDLIFSLQQTE 362
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 98 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 131
>gi|390407703|ref|NP_001254578.1| hypoxia-inducible factor 1 alpha [Gasterosteus aculeatus]
gi|126697524|gb|ABO26719.1| hypoxia-inducible factor 1 alpha [Gasterosteus aculeatus]
Length = 756
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG
Sbjct: 286 HLNKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGI 345
Query: 196 EYENFIMDCCQLE 208
+ E I+ Q+E
Sbjct: 346 QEEKLILSMDQIE 358
>gi|194385768|dbj|BAG65259.1| unnamed protein product [Homo sapiens]
Length = 577
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I
Sbjct: 45 MFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFS 104
Query: 204 CCQLE 208
Q E
Sbjct: 105 LQQTE 109
>gi|56785779|gb|AAW29027.1| hypoxia-inducible factor 1 alpha, partial [Epinephelus coioides]
Length = 699
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++CVN+V+SG + E I
Sbjct: 262 LFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKMIFS 321
Query: 204 CCQLEDYIQQRGVKREE 220
Q ED + VK E+
Sbjct: 322 LEQTEDV---KPVKEEQ 335
>gi|355778653|gb|EHH63689.1| hypothetical protein EGM_16704 [Macaca fascicularis]
Length = 827
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 95/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 123 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 178
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 179 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 238
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 239 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 298
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 299 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 358
Query: 208 E 208
E
Sbjct: 359 E 359
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>gi|355693338|gb|EHH27941.1| hypothetical protein EGK_18259, partial [Macaca mulatta]
Length = 816
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 112 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 167
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 168 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 226
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 227 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 275
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 276 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 334
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 335 IIQHDLIFSLQQTE 348
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 84 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 117
>gi|166343755|gb|ABY86628.1| hypoxia-inducible factor 1 alpha [Mustelus canis]
Length = 819
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 36/164 (21%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ F A+ SD +L + + KGQ T YR++ K GGY WV++
Sbjct: 272 RSVYEFYHAMDSD------------HLTKTHHDLFTKGQATTGQYRMLGKEGGYVWVETQ 319
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIM-----DCCQLEDYIQQRGVKREEPS--- 222
ATV+ +SKN+ Q I+CVNYV+SG + ++ +C + D K EEPS
Sbjct: 320 ATVIYNSKNSQPQCIVCVNYVLSGLVEKEVVLSLDQTECAPVSDE------KSEEPSKSP 373
Query: 223 ----NNDPEN------DSPDADREDGRNSGDSRNHDHLSPPDIE 256
NN +N + P+A + +GD+ SP +++
Sbjct: 374 VSSTNNKADNLFDKLKEEPEALTQLAPAAGDTVVSLDFSPSEMQ 417
>gi|147904258|ref|NP_001079101.1| single-minded homolog 2 [Xenopus laevis]
gi|11993330|gb|AAG42690.1| single-minded [Xenopus laevis]
Length = 760
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + ++ KGQV T YYRL++KNGG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 275 FHLRYAHHLLLVKGQVTTKYYRLLSKNGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSP 252
EY+ +L+ ++Q V + S P S +A + +G ++ +P
Sbjct: 335 VEYK-------ELQLSLEQVTVSKVPFSCRTPMTTSQEARKPIKVKTGKVKSKPRTNP 385
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|126697526|gb|ABO26720.1| hypoxia-inducible factor 1 alpha [Platichthys flesus]
Length = 778
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L S + KGQV T YR++ K GG+ WV++ AT + ++KN+ Q ++CVN+V+SG
Sbjct: 286 HLTKSHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATDIYNNKNSQPQCVVCVNFVLSGI 345
Query: 196 EYENFIMDCCQLEDYIQ-QRGVKREE 220
+ E I+ Q ED I ++ KR+E
Sbjct: 346 QEEKLILSLEQTEDEILVKKEQKRQE 371
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 99 TKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
T+ H SS ++LDGF L DG +Y+SE V+ LGL+Q+ +
Sbjct: 83 TELDIHLNSSYLKALDGFLIVLSEDGDIIYLSENVNKCLGLAQFDL 128
>gi|114677981|ref|XP_001167523.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 4 [Pan
troglodytes]
Length = 667
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 403
>gi|397493291|ref|XP_003817542.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Pan
paniscus]
Length = 667
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 403
>gi|407316750|gb|AFU07557.1| hypoxia-inducible factor 1 alpha subunit [Lepisosteus platostomus]
Length = 803
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ T YR++ K GG+ WV++ ATV+ ++KN+ Q I+CVNYV+SG E+ +
Sbjct: 294 LFAKGQATTGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVQEDLVFS 353
Query: 204 CCQLEDYIQ 212
Q E ++
Sbjct: 354 LGQTESVLK 362
>gi|350592162|ref|XP_003358999.2| PREDICTED: LOW QUALITY PROTEIN: single-minded homolog 2-like [Sus
scrofa]
Length = 626
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQSCATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 238 LLVKGQVTTKYYRLLSKLGGWVWVQSCATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 297
Query: 204 CCQL 207
Q+
Sbjct: 298 LDQV 301
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 40 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 70
>gi|297298013|ref|XP_002805106.1| PREDICTED: hypoxia-inducible factor 1-alpha [Macaca mulatta]
gi|297298015|ref|XP_002805107.1| PREDICTED: hypoxia-inducible factor 1-alpha [Macaca mulatta]
Length = 767
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 95/241 (39%), Gaps = 48/241 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 63 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 118
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + ++S+ C L S+ L
Sbjct: 119 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 178
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 179 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 238
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG + I Q
Sbjct: 239 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQT 298
Query: 208 E 208
E
Sbjct: 299 E 299
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 35 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 68
>gi|395745967|ref|XP_002824869.2| PREDICTED: hypoxia-inducible factor 1-alpha [Pongo abelii]
Length = 668
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 74/241 (30%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 R 195
R
Sbjct: 345 R 345
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|10432879|dbj|BAB13865.1| unnamed protein product [Homo sapiens]
Length = 648
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 237 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 296
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 297 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 349
>gi|328718768|ref|XP_001951675.2| PREDICTED: hypothetical protein LOC100167974 [Acyrthosiphon pisum]
Length = 928
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV T+ YR ++K GGY W+ + AT++ K ++I+C+NYVISG E+ + I
Sbjct: 316 LFEKGQVETNKYRFLSKGGGYVWIITQATILNDHKGLKPESIMCINYVISGVEHGDEIYS 375
Query: 204 CCQLEDYIQQRGVK 217
CQL + + V+
Sbjct: 376 LCQLSPVVNKPAVQ 389
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGY--RSLDGFAFALGSDGRFL 127
D +++M L+ +S +K D + ++ C SG ++LDG +DG +
Sbjct: 53 DKATVMRLTIAS-FKIMDALSSTNIDVKPDEKDCPPNMSGICNKALDGIVLITTADGDII 111
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNK 160
+ISE +S YLGLSQ +I GQ + + L ++
Sbjct: 112 FISENISSYLGLSQIDLI--GQSIYEFAHLCDQ 142
>gi|403264371|ref|XP_003924459.1| PREDICTED: hypoxia-inducible factor 1-alpha isoform 3 [Saimiri
boliviensis boliviensis]
Length = 850
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E++ L+ +G G + +
Sbjct: 146 LTQFELTGHSVFDFTHPCDH----EEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTS 201
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 202 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 260
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 261 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 309
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 310 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 368
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 369 IIQHDLIFSLQQTE 382
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 118 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 151
>gi|73970126|ref|XP_531807.2| PREDICTED: endothelial PAS domain-containing protein 1 [Canis lupus
familiaris]
Length = 975
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G S E
Sbjct: 227 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKSGPGFGKKSKDMSTERDFFMRMKCTVTN 284
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCDR--SFCIRMKSTLTKRGCHFKSSGYRS--- 112
G +N +A V L Y C S C + L+ + + S
Sbjct: 285 RGRTVNLKSATWKV--LHCTGQVKVYNNCPPHSSLCSYKEPLLSCLIIMCEPIQHPSHMD 342
Query: 113 --LDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 343 IPLDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNL 402
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 403 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 462
Query: 205 CQLEDYIQ 212
Q E +
Sbjct: 463 DQTESLFK 470
>gi|355703683|gb|EHH30174.1| hypothetical protein EGK_10787 [Macaca mulatta]
Length = 669
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + +NGGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARNGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPEN 228
Q E + +R ++R PS D N
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPN 376
>gi|119577815|gb|EAW57411.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_d [Homo
sapiens]
Length = 614
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
>gi|345785608|ref|XP_533636.3| PREDICTED: hypoxia-inducible factor 3-alpha [Canis lupus
familiaris]
Length = 639
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 277 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPHSESIVC 336
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E + +R +R PS D N D ++ R
Sbjct: 337 VHFLISRVEETGVVLSLEQTERH-SRRHSQRGTPSQKDTPNPG------DSLDASGPRIL 389
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + T D
Sbjct: 390 AFLHPPALSEATLAAD 405
>gi|74223866|dbj|BAE23829.1| unnamed protein product [Mus musculus]
Length = 441
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 98/254 (38%), Gaps = 66/254 (25%)
Query: 12 ILQVEMTGSSVFDYIHQADH-----------------TELAEQLGLGLSQGHGLASPGSA 54
+ Q E+TG SVFD+ H DH EL Q L L S G
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKELNTQRSFFLRMKCTLTSRGRT 182
Query: 55 NSEEGSGMNT-------------------GTANPDVSSLMSLSSSSSYKGCDRSFCIRMK 95
+ + + G P ++ L+ + + + + K
Sbjct: 183 MNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIPLDSK 241
Query: 96 STLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVSIYLG 138
+ L++ K S GY RS+ + AL SD +L
Sbjct: 242 TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD------------HLT 289
Query: 139 LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198
+ + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 290 KTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQH 349
Query: 199 NFIMDCCQLEDYIQ 212
+ I Q E ++
Sbjct: 350 DLIFSLQQTESVLK 363
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 128
>gi|332257097|ref|XP_003277652.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Nomascus
leucogenys]
Length = 669
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 405
>gi|426243043|ref|XP_004015375.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Ovis aries]
Length = 678
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 277 YIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 336
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDG 238
V+++IS E ++ Q E + +R V+R PS D N DR D
Sbjct: 337 VHFLISRVEETEVVLSLEQTERH-SRRHVQRGSPSQKDAPN---PGDRLDA 383
>gi|343055700|gb|AEL79602.1| hypoxia-inducible factor 1 alpha subunit [Ovis aries]
Length = 452
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ + AL SD +L + + KGQV T YR++ K GGY W+++
Sbjct: 55 RSIYEYYHALDSD------------HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQ 102
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
ATV+ ++KN+ Q I+CVNYV+SG + I Q E
Sbjct: 103 ATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 140
>gi|402906004|ref|XP_003915797.1| PREDICTED: hypoxia-inducible factor 3-alpha [Papio anubis]
Length = 632
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + +NGGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARNGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------NSLDAPGPRILAFLHPPSLSEAALAAD 405
>gi|14042618|dbj|BAB55324.1| unnamed protein product [Homo sapiens]
Length = 632
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
>gi|332856290|ref|XP_003316502.1| PREDICTED: hypoxia-inducible factor 3-alpha [Pan troglodytes]
Length = 450
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|51874048|gb|AAH80551.1| Hypoxia inducible factor 3, alpha subunit [Homo sapiens]
Length = 669
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
>gi|90421311|ref|NP_690008.2| hypoxia-inducible factor 3-alpha isoform c [Homo sapiens]
gi|145558932|sp|Q9Y2N7.2|HIF3A_HUMAN RecName: Full=Hypoxia-inducible factor 3-alpha; Short=HIF-3-alpha;
Short=HIF3-alpha; AltName:
Full=Basic-helix-loop-helix-PAS protein MOP7; AltName:
Full=Class E basic helix-loop-helix protein 17;
Short=bHLHe17; AltName: Full=HIF3-alpha-1; AltName:
Full=Inhibitory PAS domain protein; Short=IPAS; AltName:
Full=Member of PAS protein 7; AltName: Full=PAS
domain-containing protein 7
gi|261858714|dbj|BAI45879.1| hypoxia inducible factor 3, alpha subunit [synthetic construct]
Length = 669
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
>gi|18448895|gb|AAL69947.1|AF463492_1 inhibitory PAS domain protein [Homo sapiens]
gi|119577814|gb|EAW57410.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_c [Homo
sapiens]
gi|167735809|dbj|BAG07185.1| hypoxia-inducible factor-3alpha2 [Homo sapiens]
Length = 632
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
>gi|426389302|ref|XP_004061062.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Gorilla
gorilla gorilla]
Length = 669
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 405
>gi|397493293|ref|XP_003817543.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 3 [Pan
paniscus]
Length = 600
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|332856288|ref|XP_001167499.2| PREDICTED: hypoxia-inducible factor 3-alpha isoform 3 [Pan
troglodytes]
Length = 600
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N + D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPA------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|332257099|ref|XP_003277653.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Nomascus
leucogenys]
Length = 667
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 403
>gi|297265931|ref|XP_001112947.2| PREDICTED: endothelial PAS domain-containing protein 1 isoform 3
[Macaca mulatta]
Length = 832
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 34/222 (15%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLASPGSANSEEGSGMNTGTA 67
+ QVE+TG S+FD+ H DH E+ E L G+ H N+ G
Sbjct: 119 LTQVELTGHSIFDFTHPCDHEEIRENLSLKNGILNCVLHCTGQVKVYNNCPPHNSLCGYK 178
Query: 68 NPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSS----------GY------- 110
P +S L+ + + + K+ L++ K + GY
Sbjct: 179 EPLLSCLIIMCEPIQHPS-HMDIPLDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLG 237
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS F AL S+ + S + KGQV++ YR++ K+GGY W+++
Sbjct: 238 RSAYEFYHALDSEN------------MTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQ 285
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
TV+ + +N Q I+CVNYV+S E + + Q E +
Sbjct: 286 GTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMDQTESLFK 327
>gi|338714031|ref|XP_001498492.3| PREDICTED: endothelial PAS domain-containing protein 1 [Equus
caballus]
Length = 877
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ QVE+TG S+FD+ H DH E+ E L L G G S E
Sbjct: 127 LTQVELTGHSIFDFTHPCDHEEIRE--NLSLKNGSGFGKKSKDMSTERDFFMRMKCTVTN 184
Query: 59 -GSGMNTGTANPDVSSLMSLSSSSSYKGCD--RSFCIRMKSTLTKRGCHFKSSGYRS--- 112
G +N +A V L Y C S C + L+ + + S
Sbjct: 185 RGRTVNLKSATWKV--LHCTGQVKVYNNCPPHNSLCGYKEPLLSCLIIMCEPIQHPSHMD 242
Query: 113 --LDGFAFAL--GSDGRFLY----ISETVSIY----LGLSQWQ----------------V 144
LD F D +F Y I+E V + LG S ++ +
Sbjct: 243 IPLDSKTFLSRHSMDMKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNL 302
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 303 CTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSM 362
Query: 205 CQLEDYIQ 212
Q E +
Sbjct: 363 DQTESLFK 370
>gi|189054460|dbj|BAG37233.1| unnamed protein product [Homo sapiens]
Length = 667
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 403
>gi|23065535|ref|NP_690007.1| hypoxia-inducible factor 3-alpha isoform a [Homo sapiens]
gi|4558637|gb|AAD22668.1|AC007193_2 Putative homolog of hypoxia inducible factor three alpha [Homo
sapiens]
gi|16040975|dbj|BAB69689.1| hypoxia-inducible factor-3 alpha [Homo sapiens]
gi|119577816|gb|EAW57412.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_e [Homo
sapiens]
Length = 667
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 403
>gi|301624571|ref|XP_002941575.1| PREDICTED: single-minded homolog 2-like [Xenopus (Silurana)
tropicalis]
Length = 760
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L S ++ KGQV T YYRL++KNGG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 275 FHLRYSHHLLLVKGQVTTKYYRLLSKNGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQL 207
EY+ + Q+
Sbjct: 335 VEYKELQLSLEQV 347
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|426243045|ref|XP_004015376.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Ovis aries]
Length = 609
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I
Sbjct: 206 YEYIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESI 265
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDG 238
+CV+++IS E ++ Q E + +R V+R PS D N DR D
Sbjct: 266 VCVHFLISRVEETEVVLSLEQTERH-SRRHVQRGSPSQKDAPN---PGDRLDA 314
>gi|426389304|ref|XP_004061063.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Gorilla
gorilla gorilla]
Length = 667
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 351 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 403
>gi|157128070|ref|XP_001661300.1| single-minded [Aedes aegypti]
gi|108872709|gb|EAT36934.1| AAEL011013-PA [Aedes aegypti]
Length = 715
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI + +++ S ++ KGQV T YYR + K GG+TWVQS ATVV +++++ I
Sbjct: 305 YQYIHASDILHMRYSHQILMYKGQVTTKYYRFLTKGGGWTWVQSYATVVHNTRSSRPHCI 364
Query: 186 ICVNYVISGREYENFIMDCCQ 206
+ VNYV+S +E + +++ Q
Sbjct: 365 VSVNYVLSKQEAHDLLLNEIQ 385
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|407316782|gb|AFU07573.1| hypoxia-inducible factor 3 alpha subunit [Gymnocypris namensis]
Length = 594
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 59/238 (24%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL----------GLSQGHGLASPGSANSEEGSG 61
I Q+E+ G SV++ +H D EL + L L++ S + G
Sbjct: 120 ITQLELLGQSVYELVHPCDQEELRDILATRPGVSKKKTEKLTKHSFFLRMKSTLTHTGRT 179
Query: 62 MNTGTAN--------------------PDVSSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +AN P S ++L SS + +F R
Sbjct: 180 VNIKSANWKVLHCTGHMQTFSGDGENEPPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 239
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
K L+ C + + GY RS F AL D +++ ++ I +
Sbjct: 240 KMDLSFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLQI--------L 287
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIM 202
+KGQV T +YR + KNGG+ W ++ ATV+ +SK + + ++C+N+++SG E + +
Sbjct: 288 FSKGQVCTSHYRFLAKNGGFMWTETQATVLYNSKTSQPEAVVCLNFILSGVEEADVVF 345
>gi|296234167|ref|XP_002762300.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Callithrix
jacchus]
Length = 670
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + + ++IICV+++IS E ++
Sbjct: 294 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGSQSESIICVHFLISRVEETGVVLS 353
Query: 204 CCQLEDYIQQRGVKREEPSNNDPEN 228
Q E + +R ++R PS D N
Sbjct: 354 LEQTEQH-SRRPIQRGSPSQKDASN 377
>gi|119577813|gb|EAW57409.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_b [Homo
sapiens]
Length = 580
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 237 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 296
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 297 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 349
>gi|390478207|ref|XP_002807815.2| PREDICTED: LOW QUALITY PROTEIN: single-minded homolog 2 [Callithrix
jacchus]
Length = 651
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADR 235
Q+ Q + ++ + N+ P R
Sbjct: 344 LEQVSTAKSQDSWRTALSTSQESRNNEPKIPR 375
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|296234169|ref|XP_002762301.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Callithrix
jacchus]
Length = 668
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + + ++IICV+++IS E ++
Sbjct: 292 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGSQSESIICVHFLISRVEETGVVLS 351
Query: 204 CCQLEDYIQQRGVKREEPSNNDPEN 228
Q E + +R ++R PS D N
Sbjct: 352 LEQTEQH-SRRPIQRGSPSQKDASN 375
>gi|54650876|gb|AAV37017.1| GH16921p [Drosophila melanogaster]
Length = 776
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 104/284 (36%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLGLSQW------------ 142
A+G D RF Y+ + + LG S
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQH 359
Query: 143 ------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
>gi|347964476|ref|XP_311311.5| AGAP000773-PA [Anopheles gambiae str. PEST]
gi|333467549|gb|EAA06894.5| AGAP000773-PA [Anopheles gambiae str. PEST]
Length = 1045
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ Y+ +++ S ++ KGQV T YYR + K GG+ WVQS ATVV +++++ I
Sbjct: 309 YQYVHAADILHMRYSHQVLMYKGQVTTKYYRFLTKGGGWAWVQSYATVVHNTRSSRPHCI 368
Query: 186 ICVNYVISGREYENFIMDCCQ 206
+ VNYV+S +E ++ +++ Q
Sbjct: 369 VSVNYVLSDQEAQDLLLNEVQ 389
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|328788553|ref|XP_392382.4| PREDICTED: hypothetical protein LOC408852 [Apis mellifera]
Length = 1138
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 24/123 (19%)
Query: 125 RFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNK 160
+F Y E ++ YLG + +++ +KGQ T YR + K
Sbjct: 261 KFTYADEKLAEYLGWNSEELVGQSVFEFYHALDNLALDKSFKSLFSKGQCETVAYRFLGK 320
Query: 161 NGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREE 220
GGY WV + AT++ SK +++CVNY++SG E E+ + QL ++ VK E+
Sbjct: 321 RGGYAWVVTQATLIHCSKQQKPLSVVCVNYILSGVEREDEVYSARQLAARDTEKAVKPEQ 380
Query: 221 PSN 223
P++
Sbjct: 381 PAD 383
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++L+GF L SDG +Y+SE VS YLG+SQ ++ GQ + Y
Sbjct: 97 KALNGFMLVLSSDGNMIYLSENVSDYLGISQMDMM--GQSVYEY 138
>gi|407316778|gb|AFU07571.1| hypoxia-inducible factor 3 alpha subunit [Hypophthalmichthys
nobilis]
Length = 646
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 59/239 (24%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLAS------PGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L G+ + LA S + G
Sbjct: 120 ITQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKLAEHNFFLRMKSTLTHTGRT 179
Query: 62 MNTGTANPDV--------------------SSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +AN V S ++L SS + +F R
Sbjct: 180 VNIKSANWKVLHCTGHMQTFSSDDETSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 239
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
LT C + + GY RS F AL D +++ ++ I +
Sbjct: 240 SMDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLHI--------L 287
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E + +++
Sbjct: 288 FSKGQVCTSHYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVLE 346
>gi|332257103|ref|XP_003277655.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 4 [Nomascus
leucogenys]
Length = 459
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|332257105|ref|XP_003277656.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 5 [Nomascus
leucogenys]
Length = 621
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 242 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 301
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 302 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 354
>gi|300087115|gb|ADJ67806.1| hypoxia-inducible factor-1alpha [Hypophthalmichthys molitrix]
Length = 774
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 93/256 (36%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 121 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 150
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 151 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 206
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 207 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 266
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++NK GQ T YR+M K GG+ WV++ ATV+ + K
Sbjct: 267 DLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMMAKKGGFVWVETQATVIYNPK 326
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 327 NSQPQCIVCVNYVLSG 342
>gi|23065541|ref|NP_690009.1| hypoxia-inducible factor 3-alpha isoform d [Homo sapiens]
gi|119577812|gb|EAW57408.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_a [Homo
sapiens]
Length = 450
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 336
>gi|426389308|ref|XP_004061065.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 4 [Gorilla
gorilla gorilla]
Length = 450
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|332257101|ref|XP_003277654.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 3 [Nomascus
leucogenys]
Length = 600
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|407316746|gb|AFU07555.1| hypoxia-inducible factor 1 alpha subunit [Hypophthalmichthys
nobilis]
Length = 774
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 93/256 (36%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 121 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 150
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 151 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 206
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 207 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 266
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++NK GQ T YR+M K GG+ WV++ ATV+ + K
Sbjct: 267 DLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMMAKKGGFVWVETQATVIYNPK 326
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 327 NSQPQCIVCVNYVLSG 342
>gi|403299069|ref|XP_003940314.1| PREDICTED: hypoxia-inducible factor 3-alpha [Saimiri boliviensis
boliviensis]
Length = 633
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + + ++IICV+++IS E ++
Sbjct: 294 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGSQSESIICVHFLISRVEETGVVLS 353
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R +++ PS D N D ++ R L PP + + D
Sbjct: 354 LEQTEQH-SRRPIRQGGPSQKDASNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 406
Query: 264 N----SGDQRGR--NHLDHVTQLHNISTPP 287
S D R LD + STPP
Sbjct: 407 PRRFCSPDLRRLLGPILDGTSVAATPSTPP 436
>gi|194389168|dbj|BAG61601.1| unnamed protein product [Homo sapiens]
Length = 612
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 242 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 301
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 302 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 354
>gi|426389306|ref|XP_004061064.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 3 [Gorilla
gorilla gorilla]
Length = 600
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDAPGPRILAFLHPPSLSEAALAAD 336
>gi|326807022|ref|NP_071907.4| hypoxia-inducible factor 3-alpha isoform b [Homo sapiens]
gi|194387600|dbj|BAG60164.1| unnamed protein product [Homo sapiens]
Length = 600
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 336
>gi|407316756|gb|AFU07560.1| hypoxia-inducible factor 1 alpha subunit [Polyodon spathula]
Length = 784
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 14/91 (15%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ T YR++ K GG+ WV++ ATV+ ++KN+ Q I+CVNYV+SG E+ +
Sbjct: 295 LFAKGQATTGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVGEDLVFS 354
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
Q E+ ++ +SPDAD
Sbjct: 355 LGQTENILKPV--------------ESPDAD 371
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG S+FD+ H DH EL E L + + ++++G NT
Sbjct: 122 LTQFELTGHSLFDFAHPCDHEELREVL-----------THRTGSTKKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+RSF +RMK TLT RG + KS+ ++ L
Sbjct: 164 ---------------ERSFFLRMKCTLTNRGRTVNIKSATWKVL 192
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 92 IRMKSTLTKRG---------CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQW 142
+RM++ L+ G F + ++LDGF L DG +Y+SE VS +GL+Q+
Sbjct: 66 LRMRNVLSAAGNTKEESELESQFNNFYLKALDGFVMVLSEDGDMVYLSENVSKCMGLTQF 125
Query: 143 QV 144
++
Sbjct: 126 EL 127
>gi|223468713|gb|ACM89953.1| RE63002p [Drosophila melanogaster]
Length = 1507
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 104/284 (36%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLGLSQW------------ 142
A+G D RF Y+ + + LG S
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQH 359
Query: 143 ------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
>gi|24651293|ref|NP_524584.2| similar, isoform A [Drosophila melanogaster]
gi|13124829|sp|Q24167.2|SIMA_DROME RecName: Full=Protein similar
gi|10726861|gb|AAF57008.2| similar, isoform A [Drosophila melanogaster]
Length = 1507
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 104/284 (36%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLGLSQW------------ 142
A+G D RF Y+ + + LG S
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQH 359
Query: 143 ------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
>gi|301775350|ref|XP_002923107.1| PREDICTED: neuronal PAS domain-containing protein 1-like
[Ailuropoda melanoleuca]
Length = 568
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S +++KGQV+T YYR + + GG+ W+QS ATV S K+ E++++ V+YV+S E
Sbjct: 330 SHLDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGQ 389
Query: 200 FIMDCCQL 207
+D QL
Sbjct: 390 TPLDAFQL 397
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+SLDGF FAL +G+FLYISETVSIYLGLSQ
Sbjct: 137 QSLDGFVFALNQEGKFLYISETVSIYLGLSQ 167
>gi|338710541|ref|XP_001500830.3| PREDICTED: hypoxia-inducible factor 3-alpha [Equus caballus]
Length = 588
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I
Sbjct: 195 YEYIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESI 254
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDS- 244
+CV+++IS E ++ Q E + +R V+R PS +DG N GDS
Sbjct: 255 VCVHFLISRVEETEVVLSLEQTERH-SRRPVQRGIPS-------------QDGPNLGDSL 300
Query: 245 -----RNHDHLSPPDIEDGTSEGD 263
R L PP + + D
Sbjct: 301 DASGPRILAFLHPPSLSEAALAAD 324
>gi|426392995|ref|XP_004062819.1| PREDICTED: single-minded homolog 2 [Gorilla gorilla gorilla]
Length = 831
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
V+ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 448 VLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 507
Query: 204 CCQL 207
Q+
Sbjct: 508 LEQV 511
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|297374832|ref|NP_001165655.1| hypoxia-inducible factor 1-alpha [Xenopus laevis]
gi|32469782|sp|Q9I8A9.1|HIF1A_XENLA RecName: Full=Hypoxia-inducible factor 1-alpha; Short=HIF-1-alpha;
Short=HIF1-alpha
gi|8953675|emb|CAB96628.1| hypoxia inducible factor 1 alpha [Xenopus laevis]
Length = 805
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GGY WV++ ATV+ +SKN+ Q I+CVNYV+S
Sbjct: 287 HLTKPNYNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSEV 346
Query: 196 EYENFIM 202
++ I+
Sbjct: 347 VEKDLIL 353
>gi|321117670|gb|ADW54530.1| hypoxia-inducible factor-1alpha [Hypophthalmichthys nobilis]
Length = 719
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 93/256 (36%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 88 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 117
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 118 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 173
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 174 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 233
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++NK GQ T YR+M K GG+ WV++ ATV+ + K
Sbjct: 234 DLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMMAKKGGFVWVETQATVIYNPK 293
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 294 NSQPQCIVCVNYVLSG 309
>gi|119577817|gb|EAW57413.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_f [Homo
sapiens]
Length = 567
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 284 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 336
>gi|281353690|gb|EFB29274.1| hypothetical protein PANDA_012172 [Ailuropoda melanoleuca]
Length = 549
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S +++KGQV+T YYR + + GG+ W+QS ATV S K+ E++++ V+YV+S E
Sbjct: 311 SHLDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEGGQ 370
Query: 200 FIMDCCQLEDYI 211
+D QL +
Sbjct: 371 TPLDAFQLPASV 382
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 29/38 (76%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
H +SLDGF FAL +G+FLYISETVSIYLGLSQ
Sbjct: 87 HLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQ 124
>gi|410898074|ref|XP_003962523.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Takifugu
rubripes]
Length = 755
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GG+ W+++ ATV+ ++KN+ Q ++CVN+V+SG
Sbjct: 286 HLAKTHHNLFAKGQVCTGQYRMLAKRGGFVWLETQATVIYNTKNSQPQCVVCVNFVLSGI 345
Query: 196 EYENFIMDCCQLED 209
+ E ++ Q D
Sbjct: 346 QEEKMVLSLEQTAD 359
>gi|321117666|gb|ADW54528.1| hypoxia-inducible factor-1alpha [Hypophthalmichthys molitrix]
Length = 719
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 103/281 (36%), Gaps = 109/281 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 88 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 117
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 118 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 173
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 174 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 233
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++NK GQ T YR+M K GG+ WV++ ATV+ + K
Sbjct: 234 DLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMMAKKGGFVWVETQATVIYNPK 293
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
N+ Q I+CVNYV+SG + ++ Q + + V++E
Sbjct: 294 NSQPQCIVCVNYVLSGIVEGDIVLSLQQ--TMTEPKAVEKE 332
>gi|126325353|ref|XP_001374323.1| PREDICTED: single-minded homolog 2 [Monodelphis domestica]
Length = 761
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
YL + ++ KGQV T YYRL++K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 275 FYLRYAHHLLLVKGQVTTKYYRLLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQLEDYIQQRGVKREEPSNNDPEN 228
EY+ + Q+ Q + ++ +P
Sbjct: 335 IEYKEIQLSLDQVTSSKSQYSCRSSMSTSQEPRK 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|148671804|gb|EDL03751.1| single-minded homolog 2 (Drosophila) [Mus musculus]
Length = 657
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ Q I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPQCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|327268553|ref|XP_003219061.1| PREDICTED: single-minded homolog 2-like [Anolis carolinensis]
Length = 764
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + ++ KGQV T YYRL++KNGG+ W+QS AT+V +S+++ I+ VNYV++
Sbjct: 275 FHLRYAHHLLLVKGQVTTKYYRLLSKNGGWVWIQSYATIVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQL 207
EY+ + Q+
Sbjct: 335 IEYKELPLSLDQV 347
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|407316786|gb|AFU07575.1| hypoxia-inducible factor 3 alpha subunit [Hypophthalmichthys
molitrix]
Length = 633
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 62/256 (24%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLAS------PGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L G+ + LA S + G
Sbjct: 113 ITQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKLAEHNFFLRMKSTLTHTGRT 172
Query: 62 MNTGTANPDV--------------------SSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +AN V S ++L SS + +F R
Sbjct: 173 VNIKSANWKVLHCTGHMQTFSSDDETSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 232
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
LT C + + GY RS F AL D +++ ++ I +
Sbjct: 233 SMDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLHI--------L 280
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E + +
Sbjct: 281 FSKGQVCTSHYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFS- 339
Query: 205 CQLEDYIQQRGVKREE 220
LE Q+ K E+
Sbjct: 340 --LEQTCQKPKPKAEK 353
>gi|294961104|gb|ADF50043.1| hypoxia-inducible factor 1 alpha [Megalobrama amblycephala]
Length = 774
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 93/256 (36%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 121 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 150
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 151 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 206
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 207 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 266
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQ T YR+M K GG+ WV++ ATV+ + K
Sbjct: 267 DLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMMAKKGGFVWVETQATVIYNPK 326
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 327 NSQPQCIVCVNYVLSG 342
>gi|312378390|gb|EFR24978.1| hypothetical protein AND_10080 [Anopheles darlingi]
Length = 657
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV T YYR + K GG+TWVQS ATVV +++++ I+ VNYV+S +E ++ +++ Q
Sbjct: 3 KGQVTTKYYRFLTKGGGWTWVQSYATVVHNTRSSRPHCIVSVNYVLSNQEAQDLLLNEVQ 62
>gi|259013382|ref|NP_001158398.1| single-minded homolog 1 [Saccoglossus kowalevskii]
gi|90659999|gb|ABD97275.1| single-minded [Saccoglossus kowalevskii]
Length = 783
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 94/265 (35%), Gaps = 102/265 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L + + + + + T
Sbjct: 117 QVELTGNSIYEYIHPADHDEMTALL--------------TVHQQYHTHVITDFE------ 156
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------------------SLDG 115
+RSF +RMK L KR S GY+ DG
Sbjct: 157 ------------IERSFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLKIKQYTMDIAPFDG 204
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
F F D + +++ V+ G +I K
Sbjct: 205 CYQNIGLVAIGHSLPPNSITEIKMHSNMFMFRASLDLKLIFLDARVAALTGYEPQDLIEK 264
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T Y+R + K GG+ W+QS AT+V +S+++
Sbjct: 265 TLYHFVHGMDILHIRYAHHTLLLKGQVTTKYFRFLTKQGGWVWMQSSATIVHNSRSSRPH 324
Query: 184 NIICVNYVISGREYENFIMDCCQLE 208
I+ VN V++ E + + QLE
Sbjct: 325 CIVSVNTVLTNSEDKELYLSMDQLE 349
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVIAPDGKIIYISETASVHLGLSQVEL 120
>gi|322792391|gb|EFZ16375.1| hypothetical protein SINV_10619 [Solenopsis invicta]
Length = 631
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K+GG+ W+QS T+V +S+++ I+ VNYV++G E I
Sbjct: 236 LLRKGQVTTRYYRFLTKSGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTGTENTGLIQS 295
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEG 262
C Q G P + + D D R + PPD E S G
Sbjct: 296 CEQKSLSCSSPGNPPSAPVSTPVTIGTSDLDNHSPSPPSYRRTKE---PPDTEYADSSG 351
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+++T+ + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 16 LETTIKELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 62
>gi|395518589|ref|XP_003763442.1| PREDICTED: single-minded homolog 2 [Sarcophilus harrisii]
Length = 764
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
YL + ++ KGQV T YYRL++K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 275 FYLRYAHHLLLVKGQVTTKYYRLLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQLEDYIQQRGVKREEPSNNDP 226
EY+ + Q+ Q + ++ +P
Sbjct: 335 IEYKEIQLSLDQVTSSKSQYSCRTSMSTSQEP 366
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|325513895|gb|ADZ23996.1| hypoxia-inducible factor 3a [Myxocyprinus asiaticus]
Length = 632
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 59/253 (23%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLG----------LGLSQGHGLASPGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L + L++ + S G
Sbjct: 120 ITQLELLGQSVYEFVHPCDQEELRDILTTRPGLSKKKMVKLTEHNFFLRMKSTLMHTGRT 179
Query: 62 MNTGTANPDV--------------------SSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +A V S ++L SS + +F R
Sbjct: 180 VNIKSATWKVLHCTGHIQTLSSEDESSTPGGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 239
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
LT C + + GY RS F AL D +++ ++ I +
Sbjct: 240 NMDLTFTQCDGRVTELVGYEPDDLIGRSAYEFYHALDFD----HVTSSLHI--------L 287
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E + +
Sbjct: 288 FSKGQVCTSHYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEQADVVFSL 347
Query: 205 CQLEDYIQQRGVK 217
Q D + VK
Sbjct: 348 EQTSDKPLPKAVK 360
>gi|170048706|ref|XP_001870745.1| single-minded [Culex quinquefasciatus]
gi|167870723|gb|EDS34106.1| single-minded [Culex quinquefasciatus]
Length = 802
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI + + S ++ KGQV T YYR + K GG+TWVQS ATVV +++++ I
Sbjct: 405 YQYIHAADILQMRYSHQILMFKGQVTTKYYRFLTKGGGWTWVQSYATVVHNTRSSRPHCI 464
Query: 186 ICVNYVISGREYENFIMDCCQ 206
+ VNYV+S +E + +++ Q
Sbjct: 465 VSVNYVLSDQEARDLLLNEVQ 485
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 116 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 149
>gi|40849967|gb|AAR95698.1| hypoxia-inducible factor-4alpha [Ctenopharyngodon idella]
Length = 643
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 62/256 (24%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLAS------PGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L G+ + LA S + G
Sbjct: 120 ITQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKLAEHNFFLRMKSTLTHTGRT 179
Query: 62 MNTGTANPDV--------------------SSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +AN V S ++L SS + +F R
Sbjct: 180 VNMKSANWKVLHCTGHMQTFSGDDETSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 239
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
LT C + + GY RS F AL D +++ ++ I +
Sbjct: 240 SMDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLHI--------L 287
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E + +
Sbjct: 288 FSKGQVCTSHYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFS- 346
Query: 205 CQLEDYIQQRGVKREE 220
LE Q+ K E+
Sbjct: 347 --LEQTCQKPKPKAEK 360
>gi|307172407|gb|EFN63869.1| Single-minded-like protein 1 [Camponotus floridanus]
Length = 688
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K GG+ W+QS T+V +S+++ I+ VNYV++ E I++
Sbjct: 298 LLRKGQVTTRYYRFLTKTGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTATESTGLILN 357
Query: 204 C-----CQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDG 258
C C V ND +N SP R PPD +
Sbjct: 358 CEQKSSCSSPGNPPSAPVSTPTIGTNDLDNHSPSPPSYRSRTK---------EPPDTDYA 408
Query: 259 TSEG 262
S G
Sbjct: 409 DSSG 412
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+++ + + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 74 LEAAIKELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|195574995|ref|XP_002105468.1| similar [Drosophila simulans]
gi|194201395|gb|EDX14971.1| similar [Drosophila simulans]
Length = 1493
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 107/284 (37%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLG---------------- 138
A+G D RF Y+ + + LG
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYLPKDLLDTSLFSCQH 359
Query: 139 -------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
++ ++ V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
>gi|294961108|gb|ADF50045.1| hypoxia-inducible factor 3 alpha [Megalobrama amblycephala]
Length = 643
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 62/256 (24%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQL----GLGLSQGHGLAS------PGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L G+ + LA S + G
Sbjct: 120 ITQLELLGQSVYEFVHPCDQEELRDILTTRPGISKKKTEKLAEHNFFLRMKSTLTHTGRT 179
Query: 62 MNTGTANPDV--------------------SSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +AN V S ++L SS + +F R
Sbjct: 180 VNIKSANWKVLHCTGHMQTFSGDDESSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRH 239
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
LT C + + GY RS F AL D +++ ++ I +
Sbjct: 240 SMDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLHI--------L 287
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+N+++SG E + +
Sbjct: 288 FSKGQVCTSHYRFLAKNGGFIWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFS- 346
Query: 205 CQLEDYIQQRGVKREE 220
LE Q+ K E+
Sbjct: 347 --LEQTCQKPKPKAEK 360
>gi|318997430|ref|NP_001187230.1| hypoxia induced factor 1 alpha [Ictalurus punctatus]
gi|73426661|gb|AAZ75952.1| hypoxia induced factor 1 alpha [Ictalurus punctatus]
Length = 776
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GY WV++ ATV+ + KN+ Q ++CVNYV+SG
Sbjct: 288 HLSKTHHNLFAKGQVTTGQYRMLAKKAGYVWVETQATVIYNPKNSQPQCVVCVNYVLSGI 347
Query: 196 EYENFIMDCCQ 206
E+ ++ Q
Sbjct: 348 VEEDMVLSLQQ 358
>gi|321117674|gb|ADW54532.1| hypoxia-inducible factor-1alpha [Pseudorasbora parva]
Length = 719
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ T YR+M K GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG + ++
Sbjct: 259 LFTKGQATTGQYRMMAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDVVLS 318
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
Q + + V++E + + E+++P+ D
Sbjct: 319 LQQ--TVKEPKAVEKE---SQEMEDEAPELD 344
>gi|1174074|gb|AAC47303.1| similar [Drosophila melanogaster]
Length = 1505
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 107/284 (37%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLG---------------- 138
A+G D RF Y+ + + LG
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYLPKDLLDTSLFSCQH 359
Query: 139 -------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
++ ++ V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
>gi|402862419|ref|XP_003895560.1| PREDICTED: single-minded homolog 2 [Papio anubis]
Length = 667
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|407316784|gb|AFU07574.1| hypoxia-inducible factor 3 alpha subunit [Polyodon spathula]
Length = 532
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 42/239 (17%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQL------------------GLGLSQGHG 47
QH G + Q+++ G SVFD+IH D EL + L L
Sbjct: 113 QHIG--VPQLDLVGQSVFDFIHPCDQEELRDILTSKQRVGKKQSQDVHTERSFFLRMKST 170
Query: 48 LASPGSANSEEGSGMNT----------GTANPDVSSLMSLSSSSSYKG-----CDRSFCI 92
L S G S + + +A P ++ L L DRS +
Sbjct: 171 LTSKGRTLSSKSAAWKVLQCSGHIHTYSSAEPPLTCLTVLCEPIPNPSHIDFPLDRSVFL 230
Query: 93 RMKSTLTKRGCHFKSSGYRSLDGFAFA---LGSDGRFLYISETVSIYLGLSQWQVINKGQ 149
S HF R + ++ L + Y + ++ S +++KGQ
Sbjct: 231 SRHSM----DLHFVQCDERVTELLGYSPEDLIGHSAYEYYHALDTDHVTKSLQILLSKGQ 286
Query: 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208
V T +YR + K+GG+ W ++ ATV+ SSK+ + ++C+N+++SG + + Q+E
Sbjct: 287 VCTGHYRFLVKHGGFVWAETQATVLYSSKSTLPEAVVCINFILSGVQDSGVVFSVEQME 345
>gi|4827004|ref|NP_005060.1| single-minded homolog 2 long isoform [Homo sapiens]
gi|2851630|sp|Q14190.2|SIM2_HUMAN RecName: Full=Single-minded homolog 2; AltName: Full=Class E basic
helix-loop-helix protein 15; Short=bHLHe15
gi|2062417|gb|AAB62396.1| transcription factor SIM2 long form [Homo sapiens]
gi|6712195|dbj|BAA89433.1| single-minded 2 protein [Homo sapiens]
gi|119630143|gb|EAX09738.1| single-minded homolog 2 (Drosophila), isoform CRA_b [Homo sapiens]
Length = 667
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|114684078|ref|XP_001169453.1| PREDICTED: single-minded homolog 2 isoform 2 [Pan troglodytes]
Length = 667
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|351697932|gb|EHB00851.1| Hypoxia-inducible factor 3 alpha, partial [Heterocephalus glaber]
Length = 658
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 113/331 (34%), Gaps = 127/331 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+ G S+FD++H D EL + L T P
Sbjct: 113 QLELIGHSIFDFVHPCDQEELQDAL---------------------------TPRP---- 141
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTL------------TKRGCH-------FKSSGYRSLD 114
SLS R F +RMKSTL T + H +KSSG +L
Sbjct: 142 --SLSKKKPEAPTQRCFSLRMKSTLTSRGRTLNLKAATWKVLHCSGHMRAYKSSGQPALA 199
Query: 115 G--------------------------------FAFALGSDGRFLYISETVSIYLGLSQW 142
G F D +F Y E ++ G S
Sbjct: 200 GNPSSEPPLQCLVLICEAIPHPGNLEPPLGRGAFLTRHSLDMKFTYCDERIAEVAGYSPD 259
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+I +KGQ +T YR + ++GGY W Q+ ATVV +
Sbjct: 260 DLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGR 319
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDG 238
++IICV+++IS E ++ Q E + +R ++R S +DG
Sbjct: 320 GPQSESIICVHFLISRVEETGVVLSLEQTERH-SRRPLQRGTSSQ------------KDG 366
Query: 239 RNSGDSRNHD------HLSPPDIEDGTSEGD 263
N GD + L PP + + T D
Sbjct: 367 PNPGDRLDTPGPWILAFLHPPALSEATLAAD 397
>gi|321117678|gb|ADW54534.1| hypoxia-inducible factor-1alpha [Carassius auratus]
Length = 725
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 93/254 (36%), Gaps = 107/254 (42%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q ++TG S+F++ H DH EL E L + GS ++E
Sbjct: 96 QFDLTGHSIFEFSHPCDHEELREML---------VYRTGSKKTKE--------------- 131
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS-----------------------S 108
+ +RSF +RMK TLT R + KS S
Sbjct: 132 ----------QNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHVRVQECDEGSGDS 181
Query: 109 GYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQWQV 144
G++ LD F D +F Y E ++ +G +
Sbjct: 182 GFKEPPLTYLVLICEPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPDDL 241
Query: 145 INK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNA 180
+NK GQ T YR++ K GG+ WV++ ATV+ + KN+
Sbjct: 242 LNKSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNS 301
Query: 181 DEQNIICVNYVISG 194
Q I+CVNYV+SG
Sbjct: 302 QPQCIVCVNYVLSG 315
>gi|297705238|ref|XP_002829488.1| PREDICTED: hypoxia-inducible factor 3-alpha, partial [Pongo abelii]
Length = 412
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 36 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETEVVLS 95
Query: 204 CCQLEDYIQQRGVKREEPSNNDPEN--DSPDA 233
Q E + +R +++ PS D N DS DA
Sbjct: 96 LEQTEQH-SRRPIQQGAPSQKDTPNPGDSLDA 126
>gi|30089690|ref|NP_835740.1| single-minded homolog 1-A [Danio rerio]
gi|82111460|sp|Q98SJ5.1|SIM1A_DANRE RecName: Full=Single-minded homolog 1-A
gi|13506717|gb|AAK27261.1| single-minded 1 [Danio rerio]
Length = 745
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSP- 252
EY+ L+ + Q + + N P N + R ++ LSP
Sbjct: 334 DTEYKG-------LQLSLDQAASTKPSFTYNSPSNPVTENRRVGKSRVSRTKTKTRLSPY 386
Query: 253 ---PDIEDGTSEGDN 264
P SE D
Sbjct: 387 SQYPGFPTDRSESDQ 401
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + DG+ LYISET S++LGLSQ
Sbjct: 86 QTLDGFIFVVAPDGKILYISETASVHLGLSQ 116
>gi|109065407|ref|XP_001085660.1| PREDICTED: single-minded homolog 2 [Macaca mulatta]
Length = 634
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|432090566|gb|ELK23982.1| Hypoxia-inducible factor 3-alpha [Myotis davidii]
Length = 523
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C
Sbjct: 141 YIHALDSDAVGRSIHTLLSKGQAVTGRYRFLARSGGYLWTQTQATVVSGGRGPQSESIVC 200
Query: 188 VNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNH 247
V+++IS E ++ Q E +R ++ PS D N D SG R
Sbjct: 201 VHFLISRVEETGVVLSLQQTERR-SRRPLQPATPSQKDTPNPRASLD-----VSG-PRIL 253
Query: 248 DHLSPPDIEDGTSEGD 263
L PP + + T D
Sbjct: 254 AFLHPPALSEATLAAD 269
>gi|344294716|ref|XP_003419062.1| PREDICTED: LOW QUALITY PROTEIN: single-minded homolog 2-like
[Loxodonta africana]
Length = 677
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L S ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 275 FHLRYSHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTD 334
Query: 195 REYENFIMDCCQL 207
EY+ + Q+
Sbjct: 335 IEYKQLQLSLDQV 347
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|403271535|ref|XP_003927678.1| PREDICTED: single-minded homolog 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403271537|ref|XP_003927679.1| PREDICTED: single-minded homolog 2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 563
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|348556425|ref|XP_003464022.1| PREDICTED: single-minded homolog 2-like [Cavia porcellus]
Length = 662
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENF 200
EY++
Sbjct: 334 DVEYKDL 340
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|444730767|gb|ELW71141.1| Hypoxia-inducible factor 3-alpha [Tupaia chinensis]
Length = 669
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 297 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQAESIVCVHFLISRVEETGVVLS 356
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R +R P+ D D ++ R L PP + + T D
Sbjct: 357 LEQTERH-SRRPTRRGAPAQKDALKPG------DSLDAPGPRILAFLHPPALSEATLAAD 409
Query: 264 N----SGDQRG--RNHLDHVTQLHNISTPP 287
S D R LD + + STPP
Sbjct: 410 PRRFCSPDLRRLLAPILDGTSVAASPSTPP 439
>gi|397507000|ref|XP_003824000.1| PREDICTED: single-minded homolog 2 [Pan paniscus]
Length = 570
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|270001213|gb|EEZ97660.1| hypothetical protein TcasGA2_TC016205 [Tribolium castaneum]
Length = 314
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 143 QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIM 202
Q++ KGQV T YYR ++K GG+ W+QS AT+V +S+++ I+ VNYV+S E ++ ++
Sbjct: 76 QLLCKGQVTTKYYRFLSKGGGWVWMQSYATIVHNSRSSRPHCIVSVNYVLSDLEGKDLLL 135
Query: 203 DCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEG 262
+ Q G REE + + P R + PP I +
Sbjct: 136 NSAQ--------GSLREEVPTSPKSSPKPLPKYPPSRATPQ-------QPPIISPSIPDD 180
Query: 263 DNS 265
D S
Sbjct: 181 DFS 183
>gi|332229288|ref|XP_003263823.1| PREDICTED: single-minded homolog 2 [Nomascus leucogenys]
Length = 538
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
M S + G H ++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 73 MDSVAKELGSHL----LQTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|444727378|gb|ELW67876.1| Single-minded like protein 2 [Tupaia chinensis]
Length = 908
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 551 FHLRFAHHLLLVKGQVTTKYYRLLSKMGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTD 610
Query: 195 REYENFIMDCCQL 207
EY+ + Q+
Sbjct: 611 IEYKELQLSLDQV 623
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV-INKGQVLTHYYRLMNKNGGYT 165
++LDGF F + SDG+ +YISET S++LGLSQ + I + L L +N G T
Sbjct: 397 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEYEIERSFFLRMKCVLAKRNAGLT 452
>gi|194239684|ref|NP_033664.2| single-minded homolog 2 short isoform [Homo sapiens]
gi|83405489|gb|AAI10445.1| Single-minded homolog 2 (Drosophila) [Homo sapiens]
gi|119630142|gb|EAX09737.1| single-minded homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
Length = 570
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|2062419|gb|AAB62397.1| transcription factor SIM2 short form [Homo sapiens]
Length = 570
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|297471440|ref|XP_002685213.1| PREDICTED: single-minded homolog 2 [Bos taurus]
gi|296490868|tpg|DAA32981.1| TPA: single-minded homolog 2 long-like [Bos taurus]
Length = 805
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 443 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 502
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
Q+ Q + P++ +
Sbjct: 503 LDQVSTSKSQDSWRTALPTSQE 524
>gi|332023709|gb|EGI63933.1| Single-minded-like protein 1 [Acromyrmex echinatior]
Length = 688
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K GG+ W+QS T+V +S+++ I+ VNYV++ E +++
Sbjct: 295 LLRKGQVTTRYYRFLTKTGGWVWMQSYVTIVHNSRSSRPHCIVSVNYVLTATENTGLVLN 354
Query: 204 CCQ 206
C Q
Sbjct: 355 CEQ 357
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++T+ + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 72 ETTIKELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 117
>gi|355560292|gb|EHH16978.1| Class E basic helix-loop-helix protein 15, partial [Macaca mulatta]
Length = 525
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|355747376|gb|EHH51873.1| Class E basic helix-loop-helix protein 15, partial [Macaca
fascicularis]
Length = 525
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LEQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|2599383|gb|AAB84099.1| single-minded 2 protein [Mus musculus]
Length = 657
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|1389638|dbj|BAA09700.1| mSim [Mus musculus]
gi|1586925|prf||2205234A Ah receptor nuclear translocator
Length = 657
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|119226237|ref|NP_035507.2| single-minded homolog 2 [Mus musculus]
gi|2498016|sp|Q61079.1|SIM2_MOUSE RecName: Full=Single-minded homolog 2; AltName: Full=SIM
transcription factor; Short=mSIM
gi|1377818|gb|AAB19098.1| sim transcription factor [Mus musculus]
gi|1754613|dbj|BAA11013.1| Sim2 [Mus musculus]
Length = 657
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|407316776|gb|AFU07570.1| hypoxia-inducible factor 3 alpha subunit [Polypterus senegalus]
Length = 627
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ+ T +YR + KNGG+ W ++CATV+ + K++ + +IC+ +++SG E +
Sbjct: 284 LLSKGQMSTGHYRFLAKNGGFAWAETCATVLYNRKSSQPEGVICLTFILSGLEETEIVF- 342
Query: 204 CCQLEDYIQQRGVKREEPSNNDPEN 228
+E ++ +K+E S ++ EN
Sbjct: 343 --SVEQTLRIMKLKKEPGSLDEDEN 365
>gi|157819625|ref|NP_001100578.1| single-minded homolog 2 [Rattus norvegicus]
gi|149017724|gb|EDL76725.1| single-minded 2 (predicted) [Rattus norvegicus]
Length = 656
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 EVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|195505070|ref|XP_002099350.1| GE10859 [Drosophila yakuba]
gi|194185451|gb|EDW99062.1| GE10859 [Drosophila yakuba]
Length = 1517
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 90/262 (34%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG 65
+H G I +++ G +++Y HQ DH E+ E L L +A ++ SG++T
Sbjct: 199 EHLG--ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----REIAQKVKDEPQQDSGVSTH 252
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 253 ---------------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNA 291
Query: 114 --DGFAFALGS-----------------------DGRFLYISETVSIYLG---------- 138
+ A+G D RF Y+ + + LG
Sbjct: 292 KGERLLMAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMQDLLGYLPKDLLDTS 351
Query: 139 -------------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
++ ++ V++KGQ T YR + K GGY W+ S AT+V Q+
Sbjct: 352 LFLCQHGADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIV--YDKLKPQS 409
Query: 185 IICVNYVISGREYENFIMDCCQ 206
++CVNYVIS E ++ I Q
Sbjct: 410 VVCVNYVISNLENKHEIYSLAQ 431
>gi|440892235|gb|ELR45515.1| Single-minded-like protein 2, partial [Bos grunniens mutus]
Length = 538
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
Q+ Q + P++ +
Sbjct: 344 LDQVSTSKSQDSWRTALPTSQE 365
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|194663812|ref|XP_001789154.1| PREDICTED: single-minded homolog 2 [Bos taurus]
Length = 660
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 285 LVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLSL 344
Query: 205 CQLEDYIQQRGVKREEPSNND 225
Q+ Q + P++ +
Sbjct: 345 DQVSTSKSQDSWRTALPTSQE 365
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|426234631|ref|XP_004011296.1| PREDICTED: single-minded homolog 1 [Ovis aries]
Length = 769
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 277 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 336
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 337 DTEYKGLQLSLDQI 350
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|2969893|emb|CAA05055.1| human SIM2 [Homo sapiens]
Length = 463
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 221 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELQLS 280
Query: 204 CCQL 207
Q+
Sbjct: 281 LEQV 284
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 23 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 53
>gi|50261639|gb|AAT72404.1| hypoxia-inducible factor 1 alpha [Palaemonetes pugio]
Length = 1057
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 14 QVEMTGSSVFDYIHQADHTE---LAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPD 70
QV++ G +++Y H DH E L G H + +G +N +A+
Sbjct: 137 QVDVMGQCLYEYTHPCDHEEARALVSAKGPPQEPRHAFLRLKCTLTAKGRSVNLKSASYK 196
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFAL--GSDGRFLY 128
V + S KG D S+ + + + + S+ LD F D +F Y
Sbjct: 197 VVRV----SGELVKGEDESWLVALGTPVPH-----PSNIEFPLDKQTFVSKHSLDMKFTY 247
Query: 129 ISETVSIYLGLSQWQVIN------------------------KGQVLTHYYRLMNKNGGY 164
+ + VS + G + +++ KGQV T YR + + GGY
Sbjct: 248 VDDNVSEFCGHASSELLGRSLYEMHHALDSELIKDAYKTLRIKGQVETGRYRFLAREGGY 307
Query: 165 TWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
WV + AT++ K+ Q ++C+NYV+SG E
Sbjct: 308 VWVVTQATLIHGPKDHKPQYVVCLNYVVSGVE 339
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 91 CIRMKSTL---TKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
C+ KS + K S ++LDGF L ++G +Y SE ++ +LGL Q V+
Sbjct: 84 CLTKKSDMGEGKKLDLEMDSLFMKALDGFLLVLSTEGDIIYSSENIATFLGLPQVDVM-- 141
Query: 148 GQVLTHY 154
GQ L Y
Sbjct: 142 GQCLYEY 148
>gi|296484106|tpg|DAA26221.1| TPA: single-minded homolog 1 [Bos taurus]
Length = 766
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|300794523|ref|NP_001179901.1| single-minded homolog 1 [Bos taurus]
Length = 766
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|431901494|gb|ELK08516.1| Single-minded like protein 2 [Pteropus alecto]
Length = 633
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|45602851|gb|AAR95697.2| hypoxia-inducible factor-1alpha [Ctenopharyngodon idella]
Length = 774
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 92/256 (35%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVF++ H DH EL E L H
Sbjct: 121 LTQFDLTGHSVFEFSHPCDHEELREMLV------HR------------------------ 150
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
++S + + +RSF +RMK TLT R + KS
Sbjct: 151 ----TVSKKTKEQNTERSFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQERSEGSG 206
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 207 DSGFKEPPLTYLVLICDPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 266
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQ T Y +M K GG+ WV++ ATV+ + K
Sbjct: 267 DLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYHMMAKKGGFVWVETQATVIYNPK 326
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 327 NSQPQCIVCVNYVLSG 342
>gi|444725314|gb|ELW65884.1| Single-minded like protein 1 [Tupaia chinensis]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS ATVV +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|395851422|ref|XP_003798255.1| PREDICTED: single-minded homolog 1 [Otolemur garnettii]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|410970001|ref|XP_003991479.1| PREDICTED: single-minded homolog 2 [Felis catus]
Length = 548
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|410959734|ref|XP_003986456.1| PREDICTED: LOW QUALITY PROTEIN: single-minded homolog 1 [Felis
catus]
Length = 760
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|224042489|ref|XP_002189239.1| PREDICTED: single-minded homolog 2 [Taeniopygia guttata]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + ++ KGQV T YYRL++K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 281 FHLRYAHHLLLVKGQVTTKYYRLLSKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTD 340
Query: 195 REYENFIMDCCQLEDYIQQRGVKREEPSNND 225
EY+ + Q+ Q + P++ +
Sbjct: 341 IEYKELQLSLDQVTISKSQFSCRNSVPTSQE 371
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 94 MKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+ + L HF S +++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 77 VAAFLASYPVHF--SLFQTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 125
>gi|149722832|ref|XP_001503954.1| PREDICTED: single-minded homolog 1 [Equus caballus]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|157821739|ref|NP_001101111.1| single-minded homolog 1 [Rattus norvegicus]
gi|149046904|gb|EDL99652.1| single-minded 1 (predicted) [Rattus norvegicus]
Length = 765
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|380749785|gb|AFE48635.1| single-minded protein, partial [Strigamia maritima]
Length = 184
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI + +++ S ++ KGQV T YYR + K+GG+ W+QS AT+V +S+++ I
Sbjct: 15 YHYIHGSDMLHMRFSHHTLLFKGQVTTKYYRFLAKDGGWVWMQSYATIVHNSRSSRPHCI 74
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADR----EDGRNS 241
+ VNYV+S E + L+ Y+ Q K P DS D R + R
Sbjct: 75 VSVNYVLSESEARD-------LQLYVDQTLTKPSSPF------DSSDKSRMVKLKPNRTR 121
Query: 242 GDSRNHDHLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQLHNISTPPEQ 289
R+ + SP I D ++ DQ N +++I+ P +Q
Sbjct: 122 YQRRSAPYPSPTPITDYSTP-----DQTDFNAQTQQYDINSINNPAQQ 164
>gi|347968906|ref|XP_311959.5| AGAP002942-PA [Anopheles gambiae str. PEST]
gi|333467787|gb|EAA07597.6| AGAP002942-PA [Anopheles gambiae str. PEST]
Length = 1726
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 89/244 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I Q+++ G ++DY HQ DH EL E L + S + G AN D
Sbjct: 266 ISQIDIMGQPIWDYSHQCDHDELREAL--------------NGRHHSPSELLNGVANSDC 311
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
+ +R F +R+K TLT RG + KS+ Y+ L
Sbjct: 312 RPME-----------NRDFFLRLKCTLTSRGRSVNIKSASYKVLHVTGHIACKDKEGQRQ 360
Query: 114 -----------DGFAFALGSDG---------RFLYISETVSIYLG--------------- 138
LGS +F Y+ + + LG
Sbjct: 361 LVAIARPLPHPANIEVPLGSSTFLTQHTLGMKFSYVDDIMLSLLGYKPSDLLGKSLYDCH 420
Query: 139 --------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVN 189
+S ++ VI+KGQ T YR + K GGY WV + ATV+ + +++CVN
Sbjct: 421 HGTDAEHLMSTFKHVISKGQSETSRYRFLAKTGGYAWVVTQATVIYDKQK--PHSVVCVN 478
Query: 190 YVIS 193
YV+S
Sbjct: 479 YVLS 482
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
K +L G ++ ++LDGF L +DG Y+SE V+ YLG+SQ ++ GQ + Y
Sbjct: 222 KLSLKSLGLDPETIALQTLDGFLIILSADGDVTYVSENVNEYLGISQIDIM--GQPIWDY 279
>gi|426219555|ref|XP_004003986.1| PREDICTED: single-minded homolog 2 [Ovis aries]
Length = 524
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 294 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 353
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
Q+ Q + P++ +
Sbjct: 354 LDQVSTSKSQDSWRTTLPTSQE 375
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|440900235|gb|ELR51420.1| Single-minded-like protein 1 [Bos grunniens mutus]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|395534668|ref|XP_003769362.1| PREDICTED: single-minded homolog 1 [Sarcophilus harrisii]
Length = 765
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|348560534|ref|XP_003466068.1| PREDICTED: single-minded homolog 1-like [Cavia porcellus]
Length = 767
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|297747308|ref|NP_001166056.2| single-minded homolog 1 [Sus scrofa]
gi|297655327|gb|ADC53306.2| single-minded 1 protein [Sus scrofa]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|291396685|ref|XP_002714792.1| PREDICTED: single-minded homolog 1-like [Oryctolagus cuniculus]
Length = 766
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|348557855|ref|XP_003464734.1| PREDICTED: hypoxia-inducible factor 3-alpha-like [Cavia porcellus]
Length = 667
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R +R S D N DR D R L PP + + T D
Sbjct: 353 LEQTERH-SRRPFQRGTSSPKDAPN---PGDRLDAPG---PRILAFLYPPALSEATLAAD 405
>gi|260837027|ref|XP_002613507.1| hypothetical protein BRAFLDRAFT_208408 [Branchiostoma floridae]
gi|229298892|gb|EEN69516.1| hypothetical protein BRAFLDRAFT_208408 [Branchiostoma floridae]
Length = 336
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 93/251 (37%), Gaps = 108/251 (43%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q+E+TG S+FD+ H DH E+ + L ++ G N
Sbjct: 124 LTQLELTGHSIFDFTHPCDHEEIRDVLC----------------TKNGYTKN-------- 159
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL--DGFA---------- 117
K C SF +RMK TLT +G + KS+ Y+ + G+
Sbjct: 160 ------------KAC--SFFMRMKCTLTSKGRNVNLKSATYKVIHCQGYLRSYNNSQVNS 205
Query: 118 -----------FALGS-----------------------DGRFLYISETVSIY------- 136
A+G D +F Y E+V IY
Sbjct: 206 LGCKEPPLLCLVAIGEPIPHPSNIEFPLDCKTFLSRHSMDMKFTYCDESVKIYMLSDKEG 265
Query: 137 ---------------LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNAD 181
L S + V KGQV T YRL+ + GY WV++ AT++ +++
Sbjct: 266 VNLVINYTCNHILTDLFTSFFTVYQKGQVTTGQYRLLARRSGYAWVETQATIIYNNRTEK 325
Query: 182 EQNIICVNYVI 192
Q I+CVNYVI
Sbjct: 326 PQCIVCVNYVI 336
>gi|126310365|ref|XP_001367899.1| PREDICTED: single-minded homolog 1 [Monodelphis domestica]
Length = 765
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|402867751|ref|XP_003897999.1| PREDICTED: single-minded homolog 1 [Papio anubis]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|348541611|ref|XP_003458280.1| PREDICTED: single-minded homolog 1-like [Oreochromis niloticus]
Length = 761
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGMQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQM 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|354504925|ref|XP_003514523.1| PREDICTED: single-minded homolog 1 [Cricetulus griseus]
gi|344258879|gb|EGW14983.1| Single-minded-like 1 [Cricetulus griseus]
Length = 765
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|73973608|ref|XP_539058.2| PREDICTED: single-minded homolog 1 isoform 1 [Canis lupus
familiaris]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|332218557|ref|XP_003258422.1| PREDICTED: single-minded homolog 1 [Nomascus leucogenys]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|297678768|ref|XP_002817234.1| PREDICTED: single-minded homolog 1 [Pongo abelii]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|355561927|gb|EHH18559.1| hypothetical protein EGK_15194 [Macaca mulatta]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|296198859|ref|XP_002746908.1| PREDICTED: single-minded homolog 1 [Callithrix jacchus]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|301773192|ref|XP_002922016.1| PREDICTED: single-minded homolog 1-like [Ailuropoda melanoleuca]
gi|281347050|gb|EFB22634.1| hypothetical protein PANDA_010941 [Ailuropoda melanoleuca]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|2245352|gb|AAB62395.1| hSIM1 [Homo sapiens]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|403261071|ref|XP_003922958.1| PREDICTED: single-minded homolog 1 [Saimiri boliviensis
boliviensis]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|355748775|gb|EHH53258.1| hypothetical protein EGM_13864 [Macaca fascicularis]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|5102588|emb|CAB45154.1| hypothetical protein, similar to (U77968) neuronal PAS domain
protein 1 [Homo sapiens]
Length = 199
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 30/84 (35%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 85 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 144
Query: 31 HTELAEQLGLGLSQGHGLASPGSA 54
H E+AEQLG+ L G GL S G+A
Sbjct: 145 HVEMAEQLGMKLPPGRGLLSQGTA 168
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 103 CHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H S +SLDGF FAL +G+FLYISETVSIYLGLSQ ++
Sbjct: 90 AHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL 131
>gi|21614542|ref|NP_005059.2| single-minded homolog 1 [Homo sapiens]
gi|426354083|ref|XP_004044499.1| PREDICTED: single-minded homolog 1 [Gorilla gorilla gorilla]
gi|109940166|sp|P81133.2|SIM1_HUMAN RecName: Full=Single-minded homolog 1; AltName: Full=Class E basic
helix-loop-helix protein 14; Short=bHLHe14
gi|108752102|gb|AAI11932.1| SIM1 protein [synthetic construct]
gi|110645561|gb|AAI18501.1| SIM1 protein [synthetic construct]
gi|119568836|gb|EAW48451.1| single-minded homolog 1 (Drosophila) [Homo sapiens]
gi|307684428|dbj|BAJ20254.1| single-minded homolog 1 [synthetic construct]
Length = 766
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|397507866|ref|XP_003824402.1| PREDICTED: single-minded homolog 1 [Pan paniscus]
Length = 766
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|344264587|ref|XP_003404373.1| PREDICTED: single-minded homolog 1 [Loxodonta africana]
Length = 765
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|125490345|ref|NP_001074957.1| single-minded homolog 1 [Pan troglodytes]
gi|146325729|sp|A2T6X9.1|SIM1_PANTR RecName: Full=Single-minded homolog 1
gi|124111115|gb|ABM91934.1| SIM1 [Pan troglodytes]
Length = 766
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|120974098|gb|ABM46638.1| SIM1 [Gorilla gorilla]
Length = 680
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 188 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 247
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 248 DTEYKGLQLSLDQI 261
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 1 TLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 33
>gi|427930992|pdb|4H6J|A Chain A, Identification Of Cys 255 In Hif-1 As A Novel Site For
Development Of Covalent Inhibitors Of Hif-1 ARNT PASB
DOMAIN PROTEIN-Protein Interaction
Length = 113
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ + AL SD +L + + KGQV T YR++ K GGY WV++
Sbjct: 38 RSIYEYYHALDSD------------HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQ 85
Query: 171 ATVVCSSKNADEQNIICVNYVISG 194
ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 86 ATVIYNTKNSQPQCIVCVNYVVSG 109
>gi|198449612|ref|XP_001357647.2| GA20714 [Drosophila pseudoobscura pseudoobscura]
gi|198130685|gb|EAL26781.2| GA20714 [Drosophila pseudoobscura pseudoobscura]
Length = 1559
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 96/262 (36%), Gaps = 91/262 (34%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG 65
+H G I +++ G +++Y HQ DH E+ E L L + HG A E G +
Sbjct: 192 EHLG--ITKIDTLGQPIWEYSHQCDHAEIKEALSL---KRHGTAVKDEQQLESGVSTH-- 244
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 245 ---------------------HRDLFVRLKCTLTSRGRSINIKSATYKVIHITGHLVVNG 283
Query: 114 ----------------DGFAFALGS---------DGRFLYISETVSIYLGLSQ------- 141
LG+ D RF Y+ + + LG +
Sbjct: 284 KGERVLIAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMLGLLGYAPNDLLDTS 343
Query: 142 -----------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
V++KGQ T YR + K GGY W+ S AT+V + Q+
Sbjct: 344 LFVCQHGADSERLMATFKSVLSKGQGETCRYRFLGKCGGYCWIVSQATIVYDKQKP--QS 401
Query: 185 IICVNYVISGREYENFIMDCCQ 206
++CVNYVIS E ++ I Q
Sbjct: 402 VVCVNYVISNLENKHEIYSLAQ 423
>gi|195159266|ref|XP_002020503.1| GL14029 [Drosophila persimilis]
gi|194117272|gb|EDW39315.1| GL14029 [Drosophila persimilis]
Length = 1525
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 96/262 (36%), Gaps = 91/262 (34%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG 65
+H G I +++ G +++Y HQ DH E+ E L L + HG A E G +
Sbjct: 192 EHLG--ITKIDTLGQPIWEYSHQCDHAEIKEALSL---KRHGTAVKDEQQLESGVSTH-- 244
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 245 ---------------------HRDLFVRLKCTLTSRGRSINIKSATYKVIHITGHLVVNG 283
Query: 114 ----------------DGFAFALGS---------DGRFLYISETVSIYLGLSQ------- 141
LG+ D RF Y+ + + LG +
Sbjct: 284 KGERVLIAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMLGLLGYAPNDLLDTS 343
Query: 142 -----------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
V++KGQ T YR + K GGY W+ S AT+V + Q+
Sbjct: 344 LFVCQHGADSERLMATFKSVLSKGQGETCRYRFLGKCGGYCWIVSQATIVYDKQKP--QS 401
Query: 185 IICVNYVISGREYENFIMDCCQ 206
++CVNYVIS E ++ I Q
Sbjct: 402 VVCVNYVISNLENKHEIYSLAQ 423
>gi|109072171|ref|XP_001086054.1| PREDICTED: single-minded homolog 1 [Macaca mulatta]
Length = 766
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|1213281|gb|AAA91201.1| SIM1 [Mus musculus]
Length = 695
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 273 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRRHCIVSVNYVLT 332
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 333 DTEYKGLQLSLDQI 346
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|449283789|gb|EMC90383.1| Single-minded like protein 2 [Columba livia]
Length = 677
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K+GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVESDGKIMYISETASVHLGLSQVEL 119
>gi|2952266|gb|AAC05481.1| single-minded protein 1 [Mus musculus]
Length = 765
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRRHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|118083884|ref|XP_416724.2| PREDICTED: single-minded homolog 2 [Gallus gallus]
Length = 764
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|47224666|emb|CAG03650.1| unnamed protein product [Tetraodon nigroviridis]
Length = 695
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++ EY +
Sbjct: 219 LLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYRGMQLS 278
Query: 204 CCQL 207
Q+
Sbjct: 279 LDQM 282
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + DG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQ 116
>gi|146325728|sp|A1YFY6.1|SIM1_PANPA RecName: Full=Single-minded homolog 1
gi|121483834|gb|ABM54211.1| SIM1 [Pan paniscus]
Length = 766
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|407316790|gb|AFU07577.1| hypoxia-inducible factor 2 alpha subunit, partial [Protopterus
annectens]
Length = 727
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ +S+N+ Q IIC+NYV+S E N +
Sbjct: 290 LCTKGQVISGQYRMLAKHGGYVWIETHGTVIYNSRNSQPQCIICINYVLSTIEENNTVFS 349
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 350 VDQTESVFK 358
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G+G ++ MN+
Sbjct: 118 LTQVELTGHSIFDFTHPCDHEEIKE--NLCLKNGYG---------KKNREMNS------- 159
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+R F +RMK T+T RG + KS+ ++ L
Sbjct: 160 ---------------ERDFFMRMKCTVTSRGRTVNLKSATWKVL 188
>gi|350421186|ref|XP_003492763.1| PREDICTED: hypothetical protein LOC100746032 [Bombus impatiens]
Length = 1132
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 24/120 (20%)
Query: 125 RFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNK 160
+F Y E ++ YLG + +++ +KGQ T YR + K
Sbjct: 261 KFTYTDEKLAEYLGWNSEELVGQSVFEFYHALDNLALDKCFKSLFSKGQCETVAYRFLGK 320
Query: 161 NGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREE 220
GGY WV + AT++ +K +++CVNYV+SG E E+ + QL + VK EE
Sbjct: 321 RGGYAWVVTQATLIHCTKQQKPLSVVCVNYVLSGVEREDEVYSARQLAARDSEEAVKPEE 380
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 88 RSFCIRMKSTLTKRGC--HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
RS TLTK H ++L+GF L +DG +Y+SE VS YLG+SQ ++
Sbjct: 72 RSVVDSFPGTLTKSETLNHMDELFSKALNGFMLVLSNDGNMIYLSENVSDYLGVSQMDMM 131
Query: 146 NKGQVLTHY 154
GQ + Y
Sbjct: 132 --GQSVYEY 138
>gi|55730495|emb|CAH91969.1| hypothetical protein [Pongo abelii]
Length = 576
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|357611544|gb|EHJ67534.1| putative Single minded [Danaus plexippus]
Length = 256
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIHQADH E++ L L H A P + G GT +P+V
Sbjct: 117 QVELTGNSIYEYIHQADHEEMSAV--LSLQHPHTYAGPPAVGYPVG-----GTWSPNVDV 169
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
C+R+F IRMK L KR +SGY+ +
Sbjct: 170 -----------ECERAFFIRMKCVLAKRNAGLTTSGYKVI 198
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVVSPDGKIMYISETASVHLGLSQVEL 120
>gi|11968112|ref|NP_071973.1| hypoxia-inducible factor 3-alpha [Rattus norvegicus]
gi|81917470|sp|Q9JHS2.1|HIF3A_RAT RecName: Full=Hypoxia-inducible factor 3-alpha; Short=HIF-3-alpha;
Short=HIF3-alpha; AltName: Full=HIF3-alpha-1
gi|8953575|emb|CAB96611.1| hypoxia inducible factor 3 alpha [Rattus norvegicus]
Length = 662
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 93/242 (38%), Gaps = 42/242 (17%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPG--------SANSEEGSGMN 63
Q+E+ G S+FD+IH D EL + L LS+ A+ G S + G +N
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDALTPRPSLSKKKSEAATGRHFSLRMKSTLTSRGRALN 178
Query: 64 TGTANPDV------SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFA 117
A V + +S G RS L +S L A
Sbjct: 179 LKAATWKVLHCSGHMRAYKPPAQTSPAGSPRSEPPLQCLVLICEAIPHPASLEPPLGRGA 238
Query: 118 FAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NKGQVL 151
F D +F Y E ++ G S +I +KGQ +
Sbjct: 239 FLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAV 298
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++ Q E +
Sbjct: 299 TGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLSLEQTEQHT 358
Query: 212 QQ 213
++
Sbjct: 359 RR 360
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGR 125
+A+ D +S+M L+ S Y R + + K G + ++L+GF L ++G
Sbjct: 46 SAHLDKASIMRLTIS--YLRMHRLCAAGEWNQVRKEGEPLDACYLKALEGFVMVLTAEGD 103
Query: 126 FLYISETVSIYLGLSQWQVI 145
Y+SE VS +LGLSQ ++I
Sbjct: 104 MAYLSENVSKHLGLSQLELI 123
>gi|153945860|ref|NP_035506.2| single-minded homolog 1 [Mus musculus]
gi|6175033|sp|Q61045.3|SIM1_MOUSE RecName: Full=Single-minded homolog 1; Short=mSIM1
gi|1651193|dbj|BAA11467.1| mSim1 [Mus musculus]
gi|3138809|dbj|BAA28270.1| mSim1 [Mus musculus]
gi|148673108|gb|EDL05055.1| single-minded homolog 1 (Drosophila) [Mus musculus]
gi|182887925|gb|AAI60194.1| Single-minded homolog 1 (Drosophila) [synthetic construct]
Length = 765
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|395856625|ref|XP_003800723.1| PREDICTED: single-minded homolog 2 [Otolemur garnettii]
Length = 614
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL+++ GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSRRGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTEIEYKELHLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|301605109|ref|XP_002932187.1| PREDICTED: single-minded homolog 1-like [Xenopus (Silurana)
tropicalis]
Length = 763
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
STL G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 STLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|213511440|ref|NP_001133494.1| Hypoxia-inducible factor 1 alpha [Salmo salar]
gi|209154226|gb|ACI33345.1| Hypoxia-inducible factor 1 alpha [Salmo salar]
Length = 628
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSE-------- 57
+H G I Q+E+ G SV+D++H D EL + L G P ++E
Sbjct: 119 KHLG--IPQLELLGQSVYDFVHPCDQEELRDLLAP--RPGVSKKKPAQQHTEMNFFLRMK 174
Query: 58 -----EGSGMNTGTA--------------------NPDVSSLMSL-------SSSSSYKG 85
G +N +A +P S M++ SS +
Sbjct: 175 STLTSRGRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPL 234
Query: 86 CDRSFCIRMKSTLTKRGCHFKSS---GYRSLD-------GFAFALGSDGRFLYISETVSI 135
+F R L C + S GY D F AL SD ++++++ I
Sbjct: 235 DQSTFLTRHSMDLRFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSD----HVTKSLHI 290
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
L +KGQV T YR + K+GG+ W ++ ATV+ ++K + + ++C+N+++S
Sbjct: 291 LL--------SKGQVCTSLYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVV 342
Query: 196 EYENFIM 202
E + +
Sbjct: 343 EQADVVF 349
>gi|149640516|ref|XP_001506044.1| PREDICTED: single-minded homolog 1 [Ornithorhynchus anatinus]
Length = 764
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|449271560|gb|EMC81866.1| Single-minded like protein 1 [Columba livia]
Length = 766
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|281338859|gb|EFB14443.1| hypothetical protein PANDA_005294 [Ailuropoda melanoleuca]
Length = 525
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|410916801|ref|XP_003971875.1| PREDICTED: single-minded homolog 1-like [Takifugu rubripes]
Length = 760
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGMQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQM 347
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|195341439|ref|XP_002037317.1| GM12862 [Drosophila sechellia]
gi|194131433|gb|EDW53476.1| GM12862 [Drosophila sechellia]
Length = 1276
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 106/284 (37%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ + L L LA ++ SG++T
Sbjct: 207 ITKIDTLGQQIWEYSHQCDHAEIKDALSLK----RELAQKVKDEPQQNSGVSTH------ 256
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 257 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 301
Query: 118 FALGS-----------------------DGRFLYISETVSIYLG---------------- 138
A+G D F Y+ + + LG
Sbjct: 302 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMHFTYVDDKMHDLLGYLPKDLLDTSLFSCQH 361
Query: 139 -------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
++ ++ V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 362 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 419
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q K+E DPE
Sbjct: 420 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETKKEPEKGTDPE 463
>gi|124054141|gb|ABM89259.1| SIM1 [Pongo pygmaeus]
Length = 613
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 121 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 180
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 181 DTEYKGLQLSLDQI 194
>gi|224048380|ref|XP_002196673.1| PREDICTED: single-minded homolog 1 [Taeniopygia guttata]
Length = 766
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|47204586|emb|CAG13943.1| unnamed protein product [Tetraodon nigroviridis]
Length = 340
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
S++L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ ++ VNYV++
Sbjct: 19 SLHLRSAHHMLLVKGQVTTRYYRFLAKPGGWVWVQSYATIVHNSRSSRPHCVVSVNYVLT 78
Query: 194 GREYENFIM 202
EY +
Sbjct: 79 ETEYRGMRL 87
>gi|225904228|gb|ACO35259.1| hypoxia-inducible factor-1-alpha [Pseudorasbora parva]
Length = 774
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ T YR+M + GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG + ++
Sbjct: 292 LFTKGQATTGQYRMMAEKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDVVLS 351
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
Q + + V++E + + E+ +P+ D
Sbjct: 352 LQQ--TVKEPKAVEKE---SQEMEDQAPELD 377
>gi|118088683|ref|XP_419817.2| PREDICTED: single-minded homolog 1 [Gallus gallus]
Length = 766
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|432945494|ref|XP_004083626.1| PREDICTED: single-minded homolog 1-like [Oryzias latipes]
Length = 711
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ +
Sbjct: 237 LLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGMQLS 296
Query: 204 CCQL 207
Q+
Sbjct: 297 LDQM 300
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 97 TLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
TL G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 25 TLDNIGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 72
>gi|83583630|gb|ABC24677.1| hypoxia inducible factor 1 alpha [Carassius carassius]
Length = 776
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 94/256 (36%), Gaps = 107/256 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG S+F++ H DH EL E L + GS ++E
Sbjct: 121 LTQFDLTGHSIFEFSHPCDHEELREML---------VHKTGSKKTKE------------- 158
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKS---------------------- 107
+ +R+F +RMK TLT R + KS
Sbjct: 159 ------------QNTERNFFLRMKCTLTSRGRTVNIKSATWKVLHCAGHVRVQESSEDSG 206
Query: 108 -SGYR----------------------SLDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
SG++ LD F D +F Y E ++ +G
Sbjct: 207 DSGFKEPPLTYLVVICEPIPHPSNIEVPLDSKTFLSRHTLDMKFSYCDERITELMGYEPD 266
Query: 143 QVIN------------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N KGQ T YR++ K GG+ W+++ ATV+ + K
Sbjct: 267 DLLNRSVYEYYHALDSDHLTKTHNNLFAKGQATTGQYRMLAKKGGFVWLETQATVIYNPK 326
Query: 179 NADEQNIICVNYVISG 194
N+ Q I+CVNYV+SG
Sbjct: 327 NSQPQCIVCVNYVLSG 342
>gi|224587377|gb|ACN58653.1| Hypoxia-inducible factor 1 alpha [Salmo salar]
Length = 498
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV T YR++ K GG+ WV++ ATV+ ++KN+ Q ++ VN+V+SG E E ++ Q
Sbjct: 41 KGQVSTGQYRMLAKIGGFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIE-EKMVLSLEQ 99
Query: 207 LEDYIQQRGVKR 218
ED R VK+
Sbjct: 100 TED---MRSVKK 108
>gi|326916149|ref|XP_003204373.1| PREDICTED: single-minded homolog 1-like, partial [Meleagris
gallopavo]
Length = 592
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 100 TFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 159
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 160 DTEYKGLQLSLDQV 173
>gi|327261480|ref|XP_003215558.1| PREDICTED: single-minded homolog 1-like [Anolis carolinensis]
Length = 769
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQL 207
EY+ + Q+
Sbjct: 334 DTEYKGLQLSLDQV 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|189237669|ref|XP_967427.2| PREDICTED: similar to hypoxia-inducible factor 1 alpha [Tribolium
castaneum]
Length = 795
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ +KGQ T+ YR + K GGY WV + AT++ +K Q+++CVNYVISG E ++ I
Sbjct: 291 LFSKGQCETNRYRFLAKTGGYVWVLTQATLINDNKTMKPQSVVCVNYVISGVECKDEIYS 350
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
QL VK E NN+
Sbjct: 351 SSQLA------SVKTENLCNNE 366
>gi|148227427|ref|NP_001085718.1| endothelial PAS domain protein 1 [Xenopus laevis]
gi|49118238|gb|AAH73244.1| MGC80589 protein [Xenopus laevis]
Length = 862
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV+T +YR++ K+GGY WV++ TV+ +++N+ Q I+CVNYV+S E + + Q
Sbjct: 298 KGQVVTGHYRMLAKHGGYLWVETQGTVIYNTRNSQPQCIVCVNYVLSEIEKNDVVFSMDQ 357
Query: 207 LEDYIQ 212
E +
Sbjct: 358 TESLFK 363
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L + +G+ +G N D
Sbjct: 121 LTQVELTGHSIFDFTHPCDHDEIRENLSM------------------KTGVGSGKKNRDA 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
++ + F +RMK T+T RG + KS+ ++ L
Sbjct: 163 NT-------------EHDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|157114229|ref|XP_001657997.1| hypoxia-inducible factor [Aedes aegypti]
gi|108883603|gb|EAT47828.1| AAEL001097-PA [Aedes aegypti]
Length = 357
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 90/240 (37%), Gaps = 88/240 (36%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q++M G ++DY HQ DH EL E L + H SP S + G AN D
Sbjct: 144 QIDMMGQPIWDYSHQCDHEELREALN---GRHH---SP--------SELLKGVANSDCKP 189
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGY----------------RSLDG 115
+ +R F +R+K TLT RG + KS+ Y R L
Sbjct: 190 ME-----------NRDFFLRLKCTLTSRGRSVNIKSASYKVIHVTGHIACKENGQRQLVA 238
Query: 116 FAFAL-------------------GSDGRFLYISETVSIYLGLSQW-------------- 142
A L D +F Y+ + + LG +
Sbjct: 239 VARPLPHPSNIEVPLDSSTFLSKHSLDMKFSYVDDKMYALLGYNPADLMGKSLYECHHGI 298
Query: 143 ----------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
VI+KGQ T YR + + GGY WV + AT++ + +I+CVNYVI
Sbjct: 299 DSDHLMGTFKNVISKGQSETARYRFLARTGGYAWVVTQATLIYDKQKP--HSIVCVNYVI 356
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
K L + + SLDGF L +DG YISE VS YLGLSQ ++ GQ + Y
Sbjct: 98 KPALNELALEKEKLALLSLDGFLLVLSADGDITYISENVSDYLGLSQIDMM--GQPIWDY 155
>gi|345795277|ref|XP_849519.2| PREDICTED: single-minded homolog 2 isoform 1 [Canis lupus
familiaris]
Length = 559
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
++ KGQV T YYRL++K GG+ WVQS AT+V +S+++ I+ VNYV++ EY+
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDIEYKEL 340
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|30172458|gb|AAO17044.1| neuronal PAS3 transcript variant 2 [Homo sapiens]
Length = 153
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 30/84 (35%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 39 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 98
Query: 31 HTELAEQLGLGLSQGHGLASPGSA 54
H E+AEQLG+ L G GL S G+A
Sbjct: 99 HVEMAEQLGMKLPPGRGLLSQGTA 122
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 81 SSYKGCDRSFCIRMKSTLTKR--GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLG 138
+S KG R R S L H S +SLDGF FAL +G+FLYISETVSIYLG
Sbjct: 23 TSVKGAQRR---RSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLG 79
Query: 139 LSQWQV 144
LSQ ++
Sbjct: 80 LSQVEL 85
>gi|37499124|gb|AAQ91619.1| hypoxia inducible factor 1 alpha [Danio rerio]
Length = 777
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG
Sbjct: 286 HLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSG 344
>gi|407316752|gb|AFU07558.1| hypoxia-inducible factor 1 alpha subunit [Gymnocypris namensis]
Length = 774
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG
Sbjct: 285 HLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSG 343
>gi|195451485|ref|XP_002072943.1| GK13872 [Drosophila willistoni]
gi|194169028|gb|EDW83929.1| GK13872 [Drosophila willistoni]
Length = 1563
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 87/256 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L + +G+A SG+ T
Sbjct: 196 ITKIDALGQQIWEYTHQCDHAEIKEALNL---KRNGIADKIKDEHLLESGITTH------ 246
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +RMK TLT RG + KS+ Y+ + +
Sbjct: 247 ---------------HRDLFVRMKCTLTSRGRSINIKSASYKVIHITGHLTVNAKGERLL 291
Query: 118 FALGS-----------------------DGRFLYISETVSIYLG---------------- 138
A+G D +F Y+ + + LG
Sbjct: 292 VAIGRPIPHPSNIETPLGTSTFLTKHSLDMKFTYVDDKMLGLLGYKPNDLLDTSLFGCQH 351
Query: 139 -------LSQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
++ ++ V++KGQ T YR + K GGY W+ + ATVV Q+++CVNY
Sbjct: 352 GADSERLMATFKSVLSKGQGETCRYRFLGKYGGYCWIVTQATVVLD--KLKPQSVVCVNY 409
Query: 191 VISGREYENFIMDCCQ 206
VIS E ++ I Q
Sbjct: 410 VISNLENKHEIYSLAQ 425
>gi|407316758|gb|AFU07561.1| hypoxia-inducible factor 1 alpha subunit [Schizothorax prenanti]
Length = 770
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q ++CVNYV+SG
Sbjct: 284 HLNKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCVVCVNYVLSGI 343
Query: 196 EYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDAD 234
+ ++ L+ + + K EE N + E+++ + D
Sbjct: 344 VEGDVVL---SLQQTVTEP--KAEEKENQEMEDEASEVD 377
>gi|443702124|gb|ELU00285.1| hypothetical protein CAPTEDRAFT_165634, partial [Capitella teleta]
Length = 487
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 91/265 (34%), Gaps = 105/265 (39%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L + GH P E
Sbjct: 114 QVELTGNSIYEYIHPADHDEMTALLTVQQHLGH----PHLLQDYE--------------- 154
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+RSF +RMK L KR S GY+ +
Sbjct: 155 ------------IERSFFLRMKCVLAKRNAGLCSGGYKVIHCSGYLKVRQYTVDMAPFEG 202
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
F F D + +++ V+ G +I K
Sbjct: 203 CYQNVGLVALGHSLPSSAVTEVKLYSSMFMFRASLDLKLIFLDARVAQLTGYEPQDLIEK 262
Query: 148 GQVLTHY--------------------------YRLMNKNGGYTWVQSCATVVCSSKNAD 181
L HY YR + K+GG+ WVQS AT+V +S+++
Sbjct: 263 --TLYHYIHACDILHMRYSHHMLLLKGQVTTKYYRFLAKDGGWVWVQSYATIVHNSRSSR 320
Query: 182 EQNIICVNYVISGREYENFIMDCCQ 206
I+ VNYV+S E ++ + Q
Sbjct: 321 PHCIVSVNYVLSDVEAKDLQLQLEQ 345
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 84 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 117
>gi|58272373|gb|AAW69834.1| hypoxia-inducible factor 1 alpha [Gymnocypris przewalskii]
Length = 773
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG
Sbjct: 284 HLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSG 342
>gi|194905710|ref|XP_001981242.1| GG11733 [Drosophila erecta]
gi|190655880|gb|EDV53112.1| GG11733 [Drosophila erecta]
Length = 1493
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 90/262 (34%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG 65
+H G I +++ G +++Y HQ DH E+ E L L +A ++ G++T
Sbjct: 196 EHLG--ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----REIAQKVKDEPQQDLGVSTH 249
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 250 ---------------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNA 288
Query: 114 --DGFAFALGS-----------------------DGRFLYISETVSIYLGLSQW------ 142
+ A+G D RF Y+ + + LG S
Sbjct: 289 KGERLLMAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTS 348
Query: 143 ------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
V++KGQ T YR + K GGY W+ S AT+V Q+
Sbjct: 349 LFLCQHGADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQS 406
Query: 185 IICVNYVISGREYENFIMDCCQ 206
++CVNYVIS E ++ I Q
Sbjct: 407 VVCVNYVISNLENKHEIYSLAQ 428
>gi|270008138|gb|EFA04586.1| hypoxia inducible factor 1, alpha subunit [Tribolium castaneum]
Length = 879
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ +KGQ T+ YR + K GGY WV + AT++ +K Q+++CVNYVISG E ++ I
Sbjct: 375 LFSKGQCETNRYRFLAKTGGYVWVLTQATLINDNKTMKPQSVVCVNYVISGVECKDEIYS 434
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
QL VK E NN+
Sbjct: 435 SSQLA------SVKTENLCNNE 450
>gi|354491783|ref|XP_003508034.1| PREDICTED: single-minded homolog 2 [Cricetulus griseus]
gi|344256479|gb|EGW12583.1| Single-minded-like 2 [Cricetulus griseus]
Length = 538
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWGWVQSYATVVHNSRSSRPHCIVSVNYVLTDIEYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|345494448|ref|XP_001601655.2| PREDICTED: hypothetical protein LOC100117407 [Nasonia vitripennis]
Length = 815
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 128 YISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
Y+ + +++L + ++ KGQV T YYR + + GG+ W+QS AT+V +S+++ I+
Sbjct: 428 YVHVSDAVHLQQAHQILLCKGQVTTRYYRFLTRTGGWVWMQSYATIVHNSRSSRPHCIVS 487
Query: 188 VNYVISGREYENFIMDCCQ 206
VNYV+S E ++ ++ Q
Sbjct: 488 VNYVLSQIEGKDLVLSSDQ 506
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++T+ + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 216 EATIKELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 261
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 29/101 (28%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGT-ANPDVS 72
QVE+TG+S+++YIHQ DH E+A L GS + +G+ P+
Sbjct: 258 QVELTGNSIYEYIHQYDHEEMASVLS-------------------GSCLPSGSLPQPNAQ 298
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+ + +R+F +RMK L KR S+G++ +
Sbjct: 299 GDIEI---------ERAFFLRMKCVLAKRNAGLTSAGFKVI 330
>gi|331687645|gb|AED87588.1| hypoxia-inducible factor 1 alpha [Crassostrea virginica]
Length = 701
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 95/260 (36%), Gaps = 103/260 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I QV++ G S+++++H DH ++ E +G + + D
Sbjct: 116 IQQVDLVGQSIYEFVHPCDHEDITEIF-------------------HSNGRDKKKKSSD- 155
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
C +F +RMK TLT +G + KS+ Y+ +
Sbjct: 156 --------------CYHTFFVRMKCTLTNKGKNVNLKSATYKVIKFSGKLVKDEVKREAG 201
Query: 114 -DGFAFAL--------------------------GSDGRFLYISETVSIYLGLSQWQVIN 146
DG A L D +F Y + V LG + +IN
Sbjct: 202 GDGSAPYLLLIGEPIPHPSNIEVPLDRMTFLSRHNMDMKFTYCDDRVKDLLGYNCSDLIN 261
Query: 147 K------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE 182
K GQV+T YR + K GG+ W+ + TV+ +S+
Sbjct: 262 KSLFDYHHATDSEVIDHSYRNLVAKGQVMTGQYRFLAKTGGHVWMITQGTVIYNSRTQKP 321
Query: 183 QNIICVNYVISGREYENFIM 202
Q I+CV+YV+SG E + I+
Sbjct: 322 QCIVCVHYVLSGIENPSLIL 341
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 24/114 (21%)
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+ELAEQ+ S HG ++ S M ++ +S +M ++ + C+
Sbjct: 33 SELAEQIP-QYSGSHG-------QLDKASIMRLAISHLKISKIMETQRNNRHAPCE---- 80
Query: 92 IRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
F R+LDGF L ++G ++ISE+VS YLG+ Q ++
Sbjct: 81 ------------EFDPLYSRALDGFVLILSNEGDLIFISESVSKYLGIQQVDLV 122
>gi|431909193|gb|ELK12783.1| Hypoxia-inducible factor 3 alpha [Pteropus alecto]
Length = 678
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 126 FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
+ YI S +G S +++KGQ +T YR + ++GGY W Q+ ATVV + ++I
Sbjct: 275 YKYIHALDSDAVGQSIHTLLSKGQAVTGRYRFLARSGGYLWTQTQATVVSGGRGPQSESI 334
Query: 186 ICVNYVISGREYENFIMDCCQLEDY---IQQRGVKREEPSNN 224
+CV+++IS E ++ Q E + + QRG ++ + N
Sbjct: 335 VCVHFLISLVEETGVVLSLEQTERHSRRLTQRGALSQKEAPN 376
>gi|345489461|ref|XP_001605010.2| PREDICTED: hypothetical protein LOC100121394 [Nasonia vitripennis]
Length = 989
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ +KGQ T YR +NK GGY WV + AT++ S+ +++CVNY++SG E E+ +
Sbjct: 297 LFHKGQCETMAYRFLNKKGGYAWVVTQATLIHCSRLQKPLSVVCVNYLLSGVECEDEVYS 356
Query: 204 CCQLEDYIQQRGVKREEP 221
QLE Q +EEP
Sbjct: 357 VRQLEARADQL---KEEP 371
>gi|321476879|gb|EFX87839.1| hypothetical protein DAPPUDRAFT_311851 [Daphnia pulex]
Length = 839
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+++ + ++ KGQV T YYR + ++GG+ W+QS AT+V +S+++ I+ VNYV+S
Sbjct: 292 LHMRFAHHTLLFKGQVTTKYYRFLTRDGGWVWMQSYATIVHNSRSSRPHCIVAVNYVLSD 351
Query: 195 REYENFIMDCCQL 207
E ++ + QL
Sbjct: 352 VEAQSLQLSTEQL 364
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 10/57 (17%)
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
R CI+ + G H ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 74 RETCIK------ELGSHL----LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|321473894|gb|EFX84860.1| putative hypoxia inducible factor-1 alpha [Daphnia pulex]
Length = 846
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 62/254 (24%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLG----LSQGHGLASPGSANSEEGSGMNTGTANP 69
QV++ G S++DY H DH EL E L L L++ L + ++ S N A+
Sbjct: 126 QVDLIGQSIYDYCHPCDHDELREVLSLRPDGELARSFFLRLKSTLTAKGRSNNNLKAASY 185
Query: 70 DV---SSLMSLSSSSSYKGCDRSFC----------------IRMKSTLTKRGCHF----- 105
V S + L+++SS + SF + ++ + HF
Sbjct: 186 KVMNCSGRIVLATASSVRN---SFSQEGAFNEDDDLATEDDLEVEKAVKSPTSHFLVMVG 242
Query: 106 -----KSSGYRSLDGFAFALGS--DGRFLYISETVSIYLGL--------SQWQV------ 144
S+ LD + F D ++ Y+ E + +LG S +Q+
Sbjct: 243 DPIPHPSNIEMPLDSYTFLTKHTLDMKYTYVDEKIYEFLGYMPEDLEGHSAYQLHHAQDN 302
Query: 145 ----------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
KGQ+ T YR + ++GGY WVQ+ AT+V ++++ Q ++CV+ +S
Sbjct: 303 ESILKSYKTMFTKGQIQTPPYRFLARHGGYAWVQTQATLVYGNRDSRPQAVVCVHTCLSE 362
Query: 195 REYENFIMDCCQLE 208
E + I+ Q E
Sbjct: 363 IEDGDQILFVSQAE 376
>gi|225581189|gb|ACN94757.1| GA20714 [Drosophila miranda]
Length = 1575
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 91/262 (34%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTG 65
+H G I +++ G +++Y HQ DH E+ E L + HG +P + SG++T
Sbjct: 196 EHLG--ITKIDTLGQPIWEYSHQCDHAEIKEALSW---KRHG--TPVKDEQQLESGVSTH 248
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 249 ---------------------HRDLFVRLKCTLTSRGRSINIKSATYKVIHITGHLVVNG 287
Query: 114 ----------------DGFAFALGS---------DGRFLYISETVSIYLGLSQ------- 141
LG+ D RF Y+ + + LG +
Sbjct: 288 KGERVLIAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMLGLLGYAPNDLLDTS 347
Query: 142 -----------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
V++KGQ T YR + K GGY W+ S AT+V + Q+
Sbjct: 348 LFVCQHGADSERLMATFKSVLSKGQGETCRYRFLGKCGGYCWIVSQATIVYDKQKP--QS 405
Query: 185 IICVNYVISGREYENFIMDCCQ 206
++CVNYVIS E ++ I Q
Sbjct: 406 VVCVNYVISNLENKHEIYSLAQ 427
>gi|195037395|ref|XP_001990146.1| GH19178 [Drosophila grimshawi]
gi|193894342|gb|EDV93208.1| GH19178 [Drosophila grimshawi]
Length = 1566
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 93/256 (36%), Gaps = 90/256 (35%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G ++DY HQ DH E+ E L L + ++ + +G
Sbjct: 197 ITKIDTLGQQIWDYAHQCDHAEIKEALNLK----------RNVKIKDEQLLESGV----- 241
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
S+Y R +RMK TLT RG + KS+ Y+ +
Sbjct: 242 ---------STYH---RDLFVRMKCTLTSRGRSINIKSASYKVIHITGHLSVNSKGERVL 289
Query: 114 -------------------DGFAFALGSDGRFLYISETVSIYLGLSQ------------- 141
F G D +F Y+ + + LG S
Sbjct: 290 IAIGRPIPHPSNIEIPLGTSTFLTKHGLDMKFTYVDDKMHSLLGYSPGDLLETSLFECQH 349
Query: 142 -----------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ + AT+V Q+++CVNY
Sbjct: 350 GADSERLMATFKSVLSKGQGETSRYRFLGKCGGYCWIVTQATIVYD--KLKPQSVVCVNY 407
Query: 191 VISGREYENFIMDCCQ 206
VIS E ++ I Q
Sbjct: 408 VISNLENKHEIYSLAQ 423
>gi|215415905|dbj|BAG85183.1| hypoxia-inducible factor 1 alpha [Crassostrea gigas]
Length = 698
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQV+T YR + K GG+ W+ + TV+ +S+ Q I+CV+YV+SG E + I+
Sbjct: 284 LIAKGQVMTRQYRFLAKTGGHVWMITQGTVIYNSRTQKPQCIVCVHYVLSGIENPSLILS 343
Query: 204 CCQ 206
Q
Sbjct: 344 TAQ 346
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 105 FKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
F S ++LDGF L ++G +YISE+VS YLG+ Q ++
Sbjct: 82 FDSLYSKALDGFVVILSNEGDLIYISESVSKYLGIQQVDLV 122
>gi|41053885|ref|NP_956527.1| hypoxia-inducible factor 1-alpha [Danio rerio]
gi|28422764|gb|AAH46875.1| Hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) b [Danio rerio]
gi|182892028|gb|AAI65712.1| Hif1ab protein [Danio rerio]
Length = 533
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVNYV+SG
Sbjct: 286 HLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSG 344
>gi|47223798|emb|CAF98568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 710
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
++ KGQV T YYR+++K+GG+ WVQS AT+V +S+++ I+ VNYV+S E
Sbjct: 316 LLVKGQVTTKYYRMLSKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLSATE 368
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 32/103 (31%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+F+YIH +DH E+ L L P
Sbjct: 116 QVELTGNSIFEYIHPSDHDEMTAVLSL--------------------------CQPAHQH 149
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGF 116
L S Y+ +RSF +RMK L KR GY+ G+
Sbjct: 150 L-----SQEYEA-ERSFFLRMKCVLAKRNAGLTCGGYKVSGGY 186
>gi|407316766|gb|AFU07565.1| hypoxia-inducible factor 2 alpha subunit [Lepisosteus platostomus]
Length = 851
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ F AL SD + S + KGQ ++ YR++ K+GGY WV+S
Sbjct: 271 RSVYEFYHALDSDS------------MTKSHQNLCTKGQAISGQYRMLAKHGGYVWVESQ 318
Query: 171 ATVVCSSKNADEQNIICVNYVISGREYENFIM 202
TV+ +S+N+ Q I+CVNYV+S E E+ ++
Sbjct: 319 GTVIYNSRNSQPQCIVCVNYVLSEIE-ESLVL 349
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L QG G ++ +NT
Sbjct: 118 LTQVELTGHSIFDFTHPCDHDEIRENLSFKPGQGFG---------KKNKDLNT------- 161
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+R F +RMK T+T RG + KS+ ++ L
Sbjct: 162 ---------------ERDFFMRMKCTVTSRGRTVNLKSASWKVL 190
>gi|321117672|gb|ADW54531.1| hypoxia-inducible factor-1alpha [Cyprinus carpio]
Length = 719
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+ KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVN+V+SG
Sbjct: 259 LFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNFVLSG 309
>gi|221460588|ref|NP_001138129.1| similar, isoform B [Drosophila melanogaster]
gi|220903258|gb|ACL83585.1| similar, isoform B [Drosophila melanogaster]
Length = 426
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 88/242 (36%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLGLSQW------------ 142
A+G D RF Y+ + + LG S
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQH 359
Query: 143 ------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VI 192
VI
Sbjct: 418 VI 419
>gi|126697512|gb|ABO26713.1| hypoxia-inducible factor 1 alpha [Aspius aspius]
Length = 773
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQ T YR+M K GG+ WV++ ATV+ + KN+ Q I+CVN V+SG
Sbjct: 284 HLTKTHQNLFAKGQATTSQYRMMAKKGGFVWVETQATVIYNPKNSQPQCIVCVNSVLSG 342
>gi|157649153|gb|ABV59209.1| hypoxia-inducible factor 1 alpha [Cyprinus carpio]
Length = 774
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+ KGQ T YR++ K GG+ WV++ ATV+ + KN+ Q I+CVN+V+SG
Sbjct: 292 LFAKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNFVLSG 342
>gi|121503165|gb|ABM55131.1| SIM1 [Macaca mulatta]
Length = 105
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++ EY+ + Q
Sbjct: 3 KGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQ 62
Query: 207 L 207
+
Sbjct: 63 I 63
>gi|1213283|gb|AAA91202.1| SIM2 [Mus musculus]
Length = 742
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ Y+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDVGYKELQLS 343
Query: 204 CCQL 207
Q+
Sbjct: 344 LDQV 347
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|407316788|gb|AFU07576.1| hypoxia-inducible factor 3 alpha subunit [Schizothorax prenanti]
Length = 628
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 59/257 (22%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL----------GLSQGHGLASPGSANSEEGSG 61
I Q+E+ G SV++++H D EL + L L++ + S + G
Sbjct: 118 ITQLELLGQSVYEFVHPCDQEELRDILATRPGVSKKKTEKLTKHNFFLRMKSTLTHTGRT 177
Query: 62 MNTGTAN--------------------PDVSSLMSL-------SSSSSYKGCDRSFCIRM 94
+N +A P S ++L SS + +F R
Sbjct: 178 VNLKSATWKVLHCTGHMQTFSGDGENEPPAGSFLTLLCEPIPHPSSVEFLLDSSTFLTRH 237
Query: 95 KSTLTKRGCHFKSS---GY-------RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
L+ C + + GY RS F AL D +++ ++ I +
Sbjct: 238 NMDLSFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFD----HVTRSLHI--------L 285
Query: 145 INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDC 204
+KGQV T +YR + KNGG+ W ++ ATV+ +S+ + + ++C+ +++SG E + +
Sbjct: 286 FSKGQVCTSHYRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLYFILSGVEEADVVFSL 345
Query: 205 CQLEDYIQQRGVKREEP 221
Q + + R K P
Sbjct: 346 EQTCEKPKPRAEKLSVP 362
>gi|407316780|gb|AFU07572.1| hypoxia-inducible factor 3 alpha subunit [Acipenser sinensis]
Length = 530
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQL------------------GLGLSQGHG 47
QH G + Q+++ G VFD+IH D EL + L L
Sbjct: 113 QHIG--VPQLDLVGQRVFDFIHPCDQEELRDILTPRQRVGKKQSQDVHTERSFFLRMKST 170
Query: 48 LASPGSANSEEGSGMNT----------GTANPDVSSLMSLSSSSSYKG-----CDRS-FC 91
L S G S + + +A P ++ L L DRS F
Sbjct: 171 LTSRGRTLSSKSAAWKVLLCSGHIHTYSSAEPPLTCLTVLCEPIPDPSHIDFPLDRSAFL 230
Query: 92 IRMKSTLTKRGCHFKSS---GYRSLD-------GFAFALGSDGRFLYISETVSIYLGLSQ 141
R L C + + GY D + AL +D ++++++ I L
Sbjct: 231 SRHSMDLCFTQCDERVTELLGYSPEDLIGHSAYEYHHALDTD----HVTKSLQILL---- 282
Query: 142 WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
+KGQV T +YR + K+GG+ W ++ ATV+ +SK+ + ++C+N+++SG + +
Sbjct: 283 ----SKGQVCTGHYRFLVKHGGFVWAETQATVLYNSKSTLPEAVVCINFILSGVQDSGVV 338
Query: 202 MDCCQLE 208
Q+E
Sbjct: 339 FSVEQME 345
>gi|149056849|gb|EDM08280.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_b [Rattus
norvegicus]
Length = 382
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 46 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLS 105
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 106 LEQTEQHTRR 115
>gi|124013528|gb|ABM88009.1| SIM1 [Macaca nemestrina]
Length = 141
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
++ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++ EY+
Sbjct: 36 LLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGL 92
>gi|56785781|gb|AAW29028.1| hypoxia-inducible factor 4 alpha [Epinephelus coioides]
Length = 674
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQV T +YR + +GG+ W ++ ATV+ SSK + + ++C+N+V+S E + +
Sbjct: 291 LLSKGQVSTRHYRFLANSGGFVWAETQATVLYSSKMSKPKAVVCLNFVLSAVEQADVVFS 350
Query: 204 CCQLEDYIQQRGVKREEPSNNDP 226
Q V+R +P+ +P
Sbjct: 351 MEQ---------VRRGQPAEAEP 364
>gi|443732750|gb|ELU17358.1| hypothetical protein CAPTEDRAFT_72408, partial [Capitella teleta]
Length = 370
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ +KGQ +T YR + K+GGY WV++ ATV+ ++ Q ++CVN+V+SG E + ++
Sbjct: 291 LFSKGQTVTGKYRFLAKDGGYAWVETQATVIYDTRTEKPQCVVCVNFVLSGIEEKGVVLS 350
Query: 204 CCQ 206
Q
Sbjct: 351 KVQ 353
>gi|395854188|ref|XP_003799580.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 1 [Otolemur
garnettii]
Length = 666
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 290 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGMVLS 349
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++ S D N D ++ R L PP + + D
Sbjct: 350 LEQTERH-SRRPIQWGASSQKDAPNSG------DSLDASGPRILAFLHPPALSEAILAAD 402
>gi|383863621|ref|XP_003707278.1| PREDICTED: uncharacterized protein LOC100880842 [Megachile
rotundata]
Length = 1095
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ +KGQ T YR + K GGY WV + AT++ SK +++CVNY++SG E E+ +
Sbjct: 304 LFSKGQCETVAYRFLGKRGGYAWVVTQATLIHCSKQQKPLSVVCVNYILSGVEREDEVYS 363
Query: 204 CCQLEDYIQQRGVKREE 220
QL + VK E+
Sbjct: 364 ARQLAARDTETVVKPEK 380
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++L+GF L DG +Y+SE VS YLG+SQ ++ GQ + Y
Sbjct: 97 KALNGFMLVLSRDGNMIYLSENVSDYLGVSQMDMM--GQSVYEY 138
>gi|325513897|gb|ADZ23997.1| hypoxia-inducible factor 1a [Myxocyprinus asiaticus]
Length = 780
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQ T YR++ K GGY WV++ ATV+ + KN+ Q I+CVNYV+
Sbjct: 285 HLTKTHHDLFAKGQATTGQYRMLAKKGGYVWVETQATVIYNPKNSQPQCIVCVNYVLCDI 344
Query: 196 EYENFIMDCCQLEDYIQQRGVKRE------EPSNND 225
N ++ Q + + V +E EPS D
Sbjct: 345 VEGNIVLSLQQ--TMTEPKAVVKESQEMEDEPSEVD 378
>gi|12831205|ref|NP_075578.1| endothelial PAS domain-containing protein 1 [Rattus norvegicus]
gi|32469610|sp|Q9JHS1.1|EPAS1_RAT RecName: Full=Endothelial PAS domain-containing protein 1;
Short=EPAS-1; AltName: Full=Hypoxia-inducible factor
2-alpha; Short=HIF-2-alpha; Short=HIF2-alpha
gi|8953577|emb|CAB96612.1| hypoxia inducible factor 2 alpha [Rattus norvegicus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TVV + +N Q I+CVNYV+S E + ++
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVVYNPRNLQPQCIMCVNYVLSEIEKNDVVVS 355
Query: 204 CCQLE 208
Q E
Sbjct: 356 MDQTE 360
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G N D
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KTGSGF--GKKNKDR 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|260835180|ref|XP_002612587.1| hypothetical protein BRAFLDRAFT_265033 [Branchiostoma floridae]
gi|229297965|gb|EEN68596.1| hypothetical protein BRAFLDRAFT_265033 [Branchiostoma floridae]
Length = 333
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+L S ++ KGQV T YYR M KNGG+ W+QS AT+V +S+++ I+ VNYV+
Sbjct: 276 FHLRYSHHLLLMKGQVTTKYYRFMAKNGGWVWIQSYATIVHNSRSSRPHCIVSVNYVL 333
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFLFVVAPDGKIMYISETASVHLGLSQVEL 120
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 32/100 (32%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+A L + P +
Sbjct: 117 QVELTGNSIYEYIHPADHEEMAAILTVH--------------------------QPIHTH 150
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+M+ +RSF IR+K L KR GY+ +
Sbjct: 151 IMTDFE------LERSFFIRLKCVLAKRNAGLTCGGYKVI 184
>gi|74190472|dbj|BAE25907.1| unnamed protein product [Mus musculus]
Length = 470
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 99 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLS 158
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 159 LEQTEQHTRR 168
>gi|197313456|dbj|BAG69568.1| hypoxia-inducible factor 1 alpha [Daphnia magna]
Length = 842
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 64/284 (22%)
Query: 8 QGTHILQVEMTGSSVFDYIHQADHTELAEQLGL----GLSQGHGLASPGSANSEEGSGMN 63
Q + Q+++ G S++DY H DH EL E L L L++ L + ++ S N
Sbjct: 120 QQLGLPQMDLIGQSIYDYCHPCDHDELREVLSLRPDGDLTRSFFLRLKSTITAKGRSNNN 179
Query: 64 TGTANPDVSS-----LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRS------ 112
A+ V + +++ +S+ + +R+F LT+ ++ S
Sbjct: 180 LKAASYKVMNCSGRIVLATASARNTYSQERAF-DEEDDLLTEDDLELEAKAPTSHFLVMV 238
Query: 113 -------------LDGFAFALGS--DGRFLYISETVSIYLGL--------SQWQV----- 144
LD + F D ++ Y+ E + +LG S +Q+
Sbjct: 239 GDPIPHPSNIEMPLDSYTFLTKHTLDMKYTYVDEKIYEFLGYTSEDLEGQSAYQLHHAQD 298
Query: 145 -----------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
KGQ+ T YR + ++GGY WVQ+ AT+V ++++ Q ++CV+ +S
Sbjct: 299 NESILKSYKTMFTKGQIQTPPYRFLARHGGYAWVQTQATLVYGNRDSRPQAVVCVHTCLS 358
Query: 194 GREYENFIMDCCQLE---------DYIQQRGVKREEPSNNDPEN 228
E + I+ Q E G R+ P++ P+N
Sbjct: 359 EIEDGDQILFASQAESSPISLAHRPLAAAPGPSRKPPTDWVPQN 402
>gi|332227348|ref|XP_003262854.1| PREDICTED: endothelial PAS domain-containing protein 1 [Nomascus
leucogenys]
Length = 877
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 300 SHQNLCTKGQVISGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 359
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 360 VVFSMDQTESLFK 372
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 129 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 170
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 171 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 201
>gi|2117020|dbj|BAA20130.1| mHLF [Mus musculus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 355
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 356 MDQTESLFK 364
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|178057356|ref|NP_034267.3| endothelial PAS domain-containing protein 1 [Mus musculus]
gi|3914285|sp|P97481.2|EPAS1_MOUSE RecName: Full=Endothelial PAS domain-containing protein 1;
Short=EPAS-1; AltName: Full=HIF-1-alpha-like factor;
Short=HLF; Short=mHLF; AltName: Full=HIF-related factor;
Short=HRF; AltName: Full=Hypoxia-inducible factor
2-alpha; Short=HIF-2-alpha; Short=HIF2-alpha
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 355
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 356 MDQTESLFK 364
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|34785558|gb|AAH57870.1| Endothelial PAS domain protein 1 [Mus musculus]
gi|74153020|dbj|BAE34506.1| unnamed protein product [Mus musculus]
gi|148706668|gb|EDL38615.1| endothelial PAS domain protein 1 [Mus musculus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 355
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 356 MDQTESLFK 364
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|2895756|gb|AAC12871.1| hypoxia-inducible factor 1 alpha related factor [Mus musculus]
Length = 874
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 355
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 356 MDQTESLFK 364
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|281352631|gb|EFB28215.1| hypothetical protein PANDA_000205 [Ailuropoda melanoleuca]
Length = 860
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 284 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 343
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 344 VVFSMDQTESLFK 356
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 113 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KTGSGF--GKKSKDL 154
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 155 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 185
>gi|1805270|gb|AAB41496.1| endothelial PAS domain protein 1 [Mus musculus]
Length = 875
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 297 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 356
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 357 MDQTESLFK 365
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++S+
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKSV 193
>gi|354503088|ref|XP_003513613.1| PREDICTED: endothelial PAS domain-containing protein 1 [Cricetulus
griseus]
gi|344258028|gb|EGW14132.1| Endothelial PAS domain-containing protein 1 [Cricetulus griseus]
Length = 878
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 296 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 355
Query: 200 FIMDCCQLEDYIQQRGV 216
+ Q E + V
Sbjct: 356 VVFSMDQTESLFKPHLV 372
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G N D+
Sbjct: 125 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKNKDM 166
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 167 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 197
>gi|301753236|ref|XP_002912483.1| PREDICTED: endothelial PAS domain-containing protein 1-like
[Ailuropoda melanoleuca]
Length = 1022
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 450 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 509
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 510 MDQTESLFK 518
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 275 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KTGSGF--GKKSKDL 316
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 317 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 347
>gi|149056848|gb|EDM08279.1| hypoxia inducible factor 3, alpha subunit, isoform CRA_a [Rattus
norvegicus]
Length = 627
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 35/102 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+ G S+FD+IH D EL + L T P
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDAL---------------------------TPRP---- 147
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
SLS S R F +RMKSTLT RG + K++ ++ L
Sbjct: 148 --SLSKKKSEAATGRHFSLRMKSTLTSRGRTLNLKAATWKVL 187
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 100 KRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
K G + ++L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 78 KEGEPLDACYLKALEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>gi|194746128|ref|XP_001955536.1| GF18823 [Drosophila ananassae]
gi|190628573|gb|EDV44097.1| GF18823 [Drosophila ananassae]
Length = 1505
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 92/256 (35%), Gaps = 88/256 (34%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L +A SG++T
Sbjct: 197 ISKIDALGQQIWEYSHQCDHAEIKEALSLK----RDIADKVKDEQRLESGVSTH------ 246
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 247 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKDERVL 291
Query: 114 ----------DGFAFALGS---------DGRFLYISETVSIYLGLSQ------------- 141
LG+ D RF Y+ + + LG S
Sbjct: 292 IAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHGLLGYSPSDLLDTSLFVCQH 351
Query: 142 -----------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 352 GADSERLMATFKSVLSKGQGETCRYRFLGKYGGYCWIVSQATIV--YDKLKPQSVVCVNY 409
Query: 191 VISGREYENFIMDCCQ 206
VIS E ++ I Q
Sbjct: 410 VISNLENKHEIYSLAQ 425
>gi|1695801|gb|AAC51212.1| MOP2 [Homo sapiens]
Length = 870
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|390358832|ref|XP_003729347.1| PREDICTED: uncharacterized protein LOC100891430 [Strongylocentrotus
purpuratus]
Length = 1248
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 87/267 (32%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLS-----QGHGLA----SPGSANSEEGSGM 62
I Q +M G+S+ D+IH D ELA+Q + +G+G+ SP + N
Sbjct: 127 IHQYDMIGNSIMDFIHPDDQKELAKQFVVQFPGHQTFKGYGMERPDDSPTAMNINFFDEA 186
Query: 63 NTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTK------------RGCHF----- 105
+P V+ + DR F +RMKS +++ R +F
Sbjct: 187 KRKEESPVVTDFIQ----------DRHFFLRMKSVVSRRSIGGKGKVVGYRVVNFSGRLK 236
Query: 106 -----KSSGYR-------------------SLDGFAFAL--GSDGRFLYISETVSIYLGL 139
S GY +DG F G D F + + +G
Sbjct: 237 LKGSSNSKGYSVEGLICLCRPIQPQPILEIRMDGNMFMSRHGLDMSFTFCDPRIITLVGY 296
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+VI K G ++ YYR + K G + W+Q+ AT++
Sbjct: 297 EPHEVIGKTAYQFHNPLDARKVSDCHSKLIVKGSSMSKYYRFLGKLGAWVWMQTKATIIY 356
Query: 176 SSKNADEQNIICVNYVISGREYENFIM 202
++ N Q ++C+NYVI E E ++
Sbjct: 357 NTNNV-AQYVVCMNYVIGKDEGERHLL 382
>gi|1805268|gb|AAB41495.1| endothelial PAS domain protein 1 [Homo sapiens]
Length = 870
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|395854190|ref|XP_003799581.1| PREDICTED: hypoxia-inducible factor 3-alpha isoform 2 [Otolemur
garnettii]
Length = 600
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 224 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGMVLS 283
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++ S D N D ++ R L PP + + D
Sbjct: 284 LEQTERH-SRRPIQWGASSQKDAPNSG------DSLDASGPRILAFLHPPALSEAILAAD 336
>gi|358422363|ref|XP_003585341.1| PREDICTED: single-minded homolog 2, partial [Bos taurus]
Length = 303
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNYV++ +E
Sbjct: 168 LLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTLVVWEVLNDF 227
Query: 204 CCQLE 208
C +E
Sbjct: 228 CVSIE 232
>gi|62822155|gb|AAY14704.1| unknown [Homo sapiens]
Length = 861
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 283 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 342
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 343 VVFSMDQTESLFK 355
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 112 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 153
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 154 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 184
>gi|380810424|gb|AFE77087.1| endothelial PAS domain-containing protein 1 [Macaca mulatta]
Length = 869
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|40254439|ref|NP_001421.2| endothelial PAS domain-containing protein 1 [Homo sapiens]
gi|32470617|sp|Q99814.3|EPAS1_HUMAN RecName: Full=Endothelial PAS domain-containing protein 1;
Short=EPAS-1; AltName: Full=Basic-helix-loop-helix-PAS
protein MOP2; AltName: Full=Class E basic
helix-loop-helix protein 73; Short=bHLHe73; AltName:
Full=HIF-1-alpha-like factor; Short=HLF; AltName:
Full=Hypoxia-inducible factor 2-alpha;
Short=HIF-2-alpha; Short=HIF2-alpha; AltName:
Full=Member of PAS protein 2; AltName: Full=PAS
domain-containing protein 2
gi|30410995|gb|AAH51338.1| Endothelial PAS domain protein 1 [Homo sapiens]
gi|119620660|gb|EAX00255.1| endothelial PAS domain protein 1 [Homo sapiens]
gi|168277630|dbj|BAG10793.1| endothelial PAS domain-containing protein 1 [synthetic construct]
Length = 870
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|114577233|ref|XP_001147219.1| PREDICTED: endothelial PAS domain-containing protein 1 isoform 4
[Pan troglodytes]
gi|410265254|gb|JAA20593.1| endothelial PAS domain protein 1 [Pan troglodytes]
gi|410350683|gb|JAA41945.1| endothelial PAS domain protein 1 [Pan troglodytes]
Length = 870
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|397504232|ref|XP_003822706.1| PREDICTED: endothelial PAS domain-containing protein 1 [Pan
paniscus]
Length = 870
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|355565669|gb|EHH22098.1| hypothetical protein EGK_05296 [Macaca mulatta]
gi|355751289|gb|EHH55544.1| hypothetical protein EGM_04774 [Macaca fascicularis]
gi|384945768|gb|AFI36489.1| endothelial PAS domain-containing protein 1 [Macaca mulatta]
gi|384945770|gb|AFI36490.1| endothelial PAS domain-containing protein 1 [Macaca mulatta]
Length = 869
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|251823727|ref|NP_001156422.1| hypoxia-inducible factor 3-alpha isoform 1 [Mus musculus]
Length = 664
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 353 LEQTEQHTRR 362
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 87 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 125
>gi|297667706|ref|XP_002812111.1| PREDICTED: endothelial PAS domain-containing protein 1 [Pongo
abelii]
Length = 869
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|403269576|ref|XP_003926799.1| PREDICTED: endothelial PAS domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 867
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|255693991|gb|ACU30154.1| hypoxia inducible factor 1 alpha [Litopenaeus vannamei]
Length = 1050
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQ--GHGLASPGSANSEEGSGMNTGTANPDV 71
QV++ G S+++Y H DH E+ + + Q H + +G +N +A+ V
Sbjct: 158 QVDVMGQSLYEYTHPCDHEEVRDLVSAKGPQEPRHAFLRLKCTLTAKGRSVNLKSASYKV 217
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFAL--GSDGRFLYI 129
+ +S D+++ + + + + S+ LD F D +F Y+
Sbjct: 218 ---VQVSGEVVQHEEDQAWLVALGTPVPH-----PSNIEFPLDKQTFVSKHSLDMKFTYV 269
Query: 130 SETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNKNGGYT 165
+ V + G +++ +KGQV T YR + + GGY
Sbjct: 270 DDNVGEFCGYGPKELVGRSLYEMHHALDSELVKEAYKTLRSKGQVETGQYRFLARGGGYV 329
Query: 166 WVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
W+ + AT++ K+ Q ++C+NYV+SG E I+ QL
Sbjct: 330 WLVTQATLIHGPKDHKPQYVVCLNYVVSGVESPGEIVSELQL 371
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++LDGF L +DG +Y SE + I+LGLSQ V+ GQ L Y
Sbjct: 128 KALDGFLLVLSTDGDVVYTSENIVIFLGLSQVDVM--GQSLYEY 169
>gi|357616292|gb|EHJ70114.1| putative hypoxia-inducible factor 1 alpha [Danaus plexippus]
Length = 794
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 41/253 (16%)
Query: 6 QHQGTHILQVEMTGSSVFDYIHQADHTELAEQL--------GLGLSQGHGLASPGS---- 53
+H G + Q+E+ G SVF++ H DH E+ E L L L L S G
Sbjct: 93 EHLG--VSQMEVMGQSVFEFSHPCDHEEVREALRSSKDGKRDLLLRLKCTLTSKGRNVHL 150
Query: 54 --------------ANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLT 99
E + + T S+L+++ + + M + LT
Sbjct: 151 KSASYKVIHVTGHMLTEENQTDGDKDTKKIGKSALVAVGRPIPHPSNIETPLNNM-TFLT 209
Query: 100 KRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIY-------LGLSQWQ-VINKGQVL 151
K K + S +G ALG D L + T+ Y + L Q++ + +KGQ
Sbjct: 210 KHSLDMKFT--YSDEGLQNALGYDSNDL-VGHTLYDYHHAGDSAVLLQQFKSLFSKGQCE 266
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
T YR + K GGY WVQ+ ATV+ + K ++ICVNYVISG E ++ + Q++
Sbjct: 267 TGQYRFLAKKGGYAWVQTQATVI-TDKQQKPISVICVNYVISGIECKDEVFAAHQVQHAD 325
Query: 212 QQRGVKREEPSNN 224
+ V P N
Sbjct: 326 LKPAVAPTIPEAN 338
>gi|121581812|dbj|BAF44519.1| hypoxia inducible factor 3 alpha [Mus musculus]
Length = 664
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 352
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 353 LEQTEQHTRR 362
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 87 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 125
>gi|296223954|ref|XP_002757844.1| PREDICTED: endothelial PAS domain-containing protein 1 [Callithrix
jacchus]
Length = 867
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|291386847|ref|XP_002709777.1| PREDICTED: endothelial PAS domain protein 1 [Oryctolagus cuniculus]
Length = 1006
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 436 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 495
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 496 MDQTESLFK 504
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 261 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KSGSGF--GKKSKDM 302
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 303 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 333
>gi|170295859|ref|NP_058564.2| hypoxia-inducible factor 3-alpha isoform 2 [Mus musculus]
gi|341940802|sp|Q0VBL6.2|HIF3A_MOUSE RecName: Full=Hypoxia-inducible factor 3-alpha; Short=HIF-3-alpha;
Short=HIF3-alpha; AltName:
Full=Basic-helix-loop-helix-PAS protein MOP7; AltName:
Full=HIF3-alpha-1; AltName: Full=Inhibitory PAS domain
protein; Short=IPAS; AltName: Full=Member of PAS protein
7
Length = 662
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 85 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>gi|47230124|emb|CAG10538.1| unnamed protein product [Tetraodon nigroviridis]
Length = 854
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
+ KGQV T YR++ K GG+ W+++ ATV+ ++KN+ Q ++CVN+V+ R + +
Sbjct: 776 LFAKGQVCTGQYRMLAKRGGFVWLETQATVIYNTKNSQPQCVVCVNFVLRCRPSSSLL 833
>gi|351715378|gb|EHB18297.1| Endothelial PAS domain-containing protein 1, partial
[Heterocephalus glaber]
Length = 862
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 284 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 343
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 344 VVFSMDQTESLFK 356
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L G G ++ M+T
Sbjct: 113 LTQVELTGHSIFDFTHPCDHEEIRENLTLKNGSGFG---------KKVKEMST------- 156
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+R F +RMK T+T RG + KS+ ++ L
Sbjct: 157 ---------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 185
>gi|111306675|gb|AAI20588.1| Hypoxia inducible factor 3, alpha subunit [Mus musculus]
Length = 662
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 85 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>gi|3859464|gb|AAC72734.1| hypoxia inducible factor three alpha [Mus musculus]
Length = 662
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 85 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>gi|417405041|gb|JAA49246.1| Putative transcriptional regulator sim1 [Desmodus rotundus]
Length = 870
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L + ++GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSI----------------KDGSGF--GKKSKDL 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|344269355|ref|XP_003406518.1| PREDICTED: hypoxia-inducible factor 3-alpha [Loxodonta africana]
Length = 670
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+C++++IS E ++
Sbjct: 339 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRAPQSESIVCIHFLISRVEETGVVLS 398
Query: 204 CCQLEDYIQQRGVKREEPSNND 225
Q E + R +R S D
Sbjct: 399 LEQTERH-SHRPAQRATTSQKD 419
>gi|6650272|gb|AAF21782.1| hypoxia-inducible factor 3 alpha [Mus musculus]
Length = 630
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 85 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>gi|405952229|gb|EKC20066.1| Endothelial PAS domain-containing protein 1 [Crassostrea gigas]
Length = 746
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 128/351 (36%), Gaps = 101/351 (28%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I QV++ G V IH +D EL +Q L + H NS++ P +
Sbjct: 31 IDQVQLLGKKVTTLIHPSDIPELKKQFNLKPCEMHCSCPVNMDNSDKHV--------PHL 82
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGY--------------------R 111
+R F +RMK L K G K SG+
Sbjct: 83 DD-------------NRVFYLRMKCVLKKNGIRTKQSGFVLMQCSGRLKMRATASRANSY 129
Query: 112 SLDGF-----------AFALGSDG-----------RFLYISETVSIYLGLSQWQVINK-- 147
S+DG + DG +F + ++ +G +VI K
Sbjct: 130 SVDGLICICRPMQTNSVMEIRLDGSMFISRHDLGMKFTFCDPRIATLIGYDPEEVIGKTA 189
Query: 148 ----------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNI 185
G +++YYR + KN + W+Q+ AT++ ++ N Q I
Sbjct: 190 YQFHNPLDAKLVGDCHQKLIVKGSSVSNYYRFIGKNCQWVWMQTRATIIYNTSNV-PQYI 248
Query: 186 ICVNYVISGREYENFIMDCCQLEDYIQQR--GVKREEPSNNDPENDSPDADREDGRNSGD 243
+C+NY+IS E E F+ + +I Q G + EP + + S D ++G S +
Sbjct: 249 VCMNYIISEEEGEQFLR---MQQGHILQSLDGAQAIEPVKS---SKSEDQHSDNGYWSSN 302
Query: 244 SRNHDHLSPPDIEDGTSEGDNSGDQRGRNHLDHVTQ-----LHNISTPPEQ 289
S H P DG + G G V Q +++ S+PPE+
Sbjct: 303 SPYSSHHPSPGSTDGPTTGSTENLSTGNEFPTGVFQQVVDTINSHSSPPEE 353
>gi|395829787|ref|XP_003788024.1| PREDICTED: endothelial PAS domain-containing protein 1 [Otolemur
garnettii]
Length = 912
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q ++CVNYV+S E +
Sbjct: 340 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCVMCVNYVLSEIEKND 399
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 400 VVFSMDQTESLFK 412
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 169 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 210
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 211 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 241
>gi|395752789|ref|XP_002830715.2| PREDICTED: LOW QUALITY PROTEIN: single-minded homolog 2 [Pongo
abelii]
Length = 679
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KGQV T YYRL++K GG+ WVQS ATVV +S+++ I+ VNY + EY+ +
Sbjct: 284 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVSVNYC-THIEYKELQLS 342
Query: 204 CCQL 207
Q+
Sbjct: 343 LVQV 346
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|380039562|gb|AFD32325.1| hypoxia-inducible factor 1 alpha, partial [Huso huso]
Length = 134
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ KGQ +T YR++ K GG+ WV++ ATV+ ++KN+ Q I+CVNYV+S
Sbjct: 85 LFAKGQAITGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLS 134
>gi|290760626|gb|ADD59898.1| hypoxia-inducible factor 3 alpha [Mustelus canis]
Length = 468
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIM 202
+++KGQV T YR + KNGG+ W ++ ATV+ +SK + + ++C+N+++S E + +
Sbjct: 288 LLSKGQVCTSRYRFLAKNGGFVWTETQATVLYNSKTSQPEAVVCLNFILSAVEEADVVF 346
>gi|431838120|gb|ELK00052.1| Single-minded like protein 1 [Pteropus alecto]
Length = 355
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
V+ KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 306 VLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 355
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>gi|59933250|ref|NP_001012371.1| hypoxia-inducible factor 1, alpha subunit, like 2 [Danio rerio]
gi|57164638|gb|AAW34262.1| hypoxia inducible factor alpha-like protein [Danio rerio]
Length = 523
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 41/57 (71%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
+++KGQV T YRL+++ GGY W ++ A++VC+S+ ++++C+NY++S E N
Sbjct: 296 LLSKGQVSTGKYRLLHRYGGYVWAETDASLVCNSQTGVPESVVCINYILSEVEQPNL 352
>gi|107051811|gb|ABF83561.1| hypoxia-inducible factor alpha [Metacarcinus magister]
Length = 1047
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++NKGQV T YR + + GGY W+ + AT++ + Q+++C+NYV+S E + I+
Sbjct: 287 LLNKGQVETSRYRFLARAGGYVWLVTQATLIHGPRENKPQHVVCLNYVVSEIESRDEILS 346
Query: 204 CCQL 207
QL
Sbjct: 347 EFQL 350
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSG------------YRSLDGFA 117
D +S+M L+ + + RS C ++ LTKR K SG ++LDGF
Sbjct: 63 DKASIMRLTIAILHL---RSVC---ETGLTKR---IKGSGGSKLDLEMDEFHMKALDGFL 113
Query: 118 FALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMN 159
+ +DGR +Y SE + YLG Q +V+ G L HY +++
Sbjct: 114 LVVSTDGRVIYTSENIVTYLGHHQEEVM--GSYLYHYTNMVD 153
>gi|344291845|ref|XP_003417640.1| PREDICTED: endothelial PAS domain-containing protein 1 [Loxodonta
africana]
Length = 891
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I CVNYV+S E +
Sbjct: 314 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCITCVNYVLSDIEKND 373
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 374 VVFSMDQTESLFK 386
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 143 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 184
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 185 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 215
>gi|62203558|gb|AAH93209.1| Hif1al2 protein [Danio rerio]
Length = 660
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 41/57 (71%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200
+++KGQV T YRL+++ GGY W ++ A++VC+S+ ++++C+NY++S E N
Sbjct: 293 LLSKGQVSTGKYRLLHRYGGYVWAETDASLVCNSQTGVPESVVCINYILSEVEQPNL 349
>gi|344258908|gb|EGW15012.1| Neuronal PAS domain-containing protein 1 [Cricetulus griseus]
Length = 275
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 78 SSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYL 137
SS+ + R + + S + ++ H +SLDGF FAL +G+FLYISETVSIYL
Sbjct: 20 PPSSAVRAPARRGPVALVSEVFEQ--HLGGHILQSLDGFVFALNQEGKFLYISETVSIYL 77
Query: 138 GLSQ 141
GLSQ
Sbjct: 78 GLSQ 81
>gi|345309562|ref|XP_001520546.2| PREDICTED: endothelial PAS domain-containing protein 1-like,
partial [Ornithorhynchus anatinus]
Length = 511
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQ 206
KGQV++ YR++ K GGY W+++ TV+ +++N Q I CVNYV+S + + + Q
Sbjct: 39 KGQVVSGQYRMLAKLGGYVWLETQGTVIYNTRNLQPQCIFCVNYVLSEIQKNDVVFSMDQ 98
Query: 207 LEDYIQ 212
E +
Sbjct: 99 TESLFK 104
>gi|449331544|gb|AGE97172.1| hypoxia inducible factor-1alpha [Haliotis diversicolor]
Length = 711
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQ +T YR + KNGGY WV + T++ +++ Q ++CV+YV+S + +N I+
Sbjct: 289 LFAKGQTMTGQYRFLAKNGGYAWVITQGTIIYNNRTQKPQWVVCVHYVLSAIQEKNMILS 348
Query: 204 CCQ 206
Q
Sbjct: 349 EVQ 351
>gi|47204219|emb|CAG14179.1| unnamed protein product [Tetraodon nigroviridis]
Length = 36
Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+SLDGF FAL +GRFLYISETVSIYLGLSQ
Sbjct: 1 QSLDGFVFALNKEGRFLYISETVSIYLGLSQ 31
>gi|118343818|ref|NP_001071731.1| transcription factor protein [Ciona intestinalis]
gi|70569828|dbj|BAE06484.1| transcription factor protein [Ciona intestinalis]
Length = 735
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 63/172 (36%)
Query: 84 KGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL-------------DGFAFAL-------- 120
K +SF +RMKSTLT G + KS+ Y+ L D AF
Sbjct: 177 KSLRKSFFLRMKSTLTPNGKTTNLKSASYKVLRCTGMITPSQAQSDTSAFVAHVQPIPHP 236
Query: 121 ----------------GSDGRFLYISETVSIYL-----GL-------------------S 140
D +F Y E +S L GL S
Sbjct: 237 SNIQHVLDSRTFLSRHSPDMKFTYWDERMSEILDYDAEGLMGKSFYDYVHVMDAKAIANS 296
Query: 141 QWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
++ GQ+ T YR +NKNGGY WV + ATV+ +KN Q ++C++YVI
Sbjct: 297 FQKLYRLGQIETERYRFLNKNGGYHWVITQATVITGNKNQKAQCVVCIHYVI 348
>gi|291227639|ref|XP_002733787.1| PREDICTED: hypoxia inducible factor, partial [Saccoglossus
kowalevskii]
Length = 777
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI-SGREYENFIMDCC 205
KGQ T YR + K GGY WVQ+ ATV+ +++ + Q I+ VNYV+ SG E E+ ++
Sbjct: 228 KGQTSTGQYRFLAKKGGYVWVQTQATVIYNNRTSKPQCIVSVNYVLSSGVEKEDLVLSTE 287
Query: 206 QLEDYIQQRGVKREE 220
Q Q +G+ + +
Sbjct: 288 Q-----QMKGLPKSK 297
>gi|149050487|gb|EDM02660.1| endothelial PAS domain protein 1 [Rattus norvegicus]
Length = 873
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+ KGQV++ YR++ K+GGY W+++ TVV + +N Q I+CVNYV+
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVVYNPRNLQPQCIMCVNYVL 344
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G N D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KTGSGF--GKKNKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>gi|374279662|gb|AEZ04012.1| hypoxia-inducible factor alpha, partial [Callinectes sapidus]
Length = 1026
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++NKGQV T YR + + GGY W+ + AT++ + Q ++C+NYV+S E I+
Sbjct: 267 LLNKGQVETSRYRFLARGGGYVWLVTQATLIHGPRENKPQYVVCLNYVVSEVESSGEILS 326
Query: 204 CCQL 207
QL
Sbjct: 327 EFQL 330
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 70 DVSSLMSLSSSSSY--KGCDRSFCIRMK-STLTKRGCHFKSSGYRSLDGFAFALGSDGRF 126
D +S+M L+ ++ + C+ R+K S +K ++LDGF + +DGR
Sbjct: 43 DKASIMRLTIANLHFRSVCETGLTKRIKGSGGSKLDLEMDEHHLKALDGFLLVVSTDGRV 102
Query: 127 LYISETVSIYLGLSQWQVINKGQVLTHYYRLMN 159
+Y SE + +LG Q +V+ G L HY +++
Sbjct: 103 IYTSENIVSFLGHHQEEVM--GSSLYHYTNMVD 133
>gi|47230125|emb|CAG10539.1| unnamed protein product [Tetraodon nigroviridis]
Length = 385
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+ KGQV T YR++ K GG+ W+++ ATV+ ++KN+ Q ++CVN+V+
Sbjct: 337 LFAKGQVCTGQYRMLAKRGGFVWLETQATVIYNTKNSQPQCVVCVNFVL 385
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
GC+ K+ LDGF L DG +Y+SE +S LGL+Q+ +
Sbjct: 91 GCYLKA-----LDGFLMVLSEDGDMIYLSENISKCLGLAQFDL 128
>gi|354503394|ref|XP_003513766.1| PREDICTED: neuronal PAS domain-containing protein 1-like
[Cricetulus griseus]
Length = 421
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 29/38 (76%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
H +SLDGF FAL +G+FLYISETVSIYLGLSQ
Sbjct: 92 HLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQ 129
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 30/69 (43%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE GS VFDYIH DH
Sbjct: 87 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEAGGSXVFDYIHPGDH 146
Query: 32 TELAEQLGL 40
+E+ EQLGL
Sbjct: 147 SEVLEQLGL 155
>gi|119865943|gb|ABG34269.2| single-minded 1 [Sus scrofa]
Length = 55
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
KGQV T YYR + K+GG+ WVQS AT+V +S+++ I+ VNYV+
Sbjct: 10 KGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVL 55
>gi|156392022|ref|XP_001635848.1| predicted protein [Nematostella vectensis]
gi|156222946|gb|EDO43785.1| predicted protein [Nematostella vectensis]
Length = 332
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 143 QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+ + KGQ++T YYR MNKNGG+ W+Q+ +++ N + + ++C+NY++
Sbjct: 283 KFLAKGQIMTKYYRWMNKNGGWVWMQTKCSLIPHPSNPELKQMLCLNYIL 332
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++DGF L +G+ LYISETVS+ LGLSQ ++ G + HY
Sbjct: 84 AMDGFLMVLSQEGKILYISETVSVNLGLSQVEL--TGNNVYHY 124
>gi|124054321|gb|ABM89374.1| EPAS1 [Pongo pygmaeus]
Length = 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 135 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 194
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 195 VVFSMDQTESLFK 207
>gi|444705900|gb|ELW47278.1| Endothelial PAS domain-containing protein 1 [Tupaia chinensis]
Length = 833
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+
Sbjct: 236 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVL 288
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 65 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDV 106
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 107 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 137
>gi|47210062|emb|CAF96125.1| unnamed protein product [Tetraodon nigroviridis]
Length = 410
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 57/224 (25%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPGSAN---------SEEGS 60
I+Q+E+ G S++D++H D EL + L GL++ P N + G
Sbjct: 123 IVQLELLGQSIYDFVHPCDQEELTDLLAPRPGLNKKQVKEMPSDINFFLRMKSTLTARGR 182
Query: 61 GMNTGTA--------------NPDVSS---LMSL-------SSSSSYKGCDRSFCIRMKS 96
+N +A + +VSS +M L SS + +F R
Sbjct: 183 TVNIKSAEWKVLHCTGHMCPFDAEVSSAARVMVLLCEPIPHPSSVEFPLDTYTFLTRHSM 242
Query: 97 TLTKRGCHFKSS---GYRSLD-----GFAF--ALGSDGRFLYISETVSIYLGLSQWQVIN 146
L C + + GY+ D F F AL SD +IS ++ L +
Sbjct: 243 DLRFTHCEGRVTELVGYKPDDLIGRSAFEFHHALDSD----HISRSLRTLL--------S 290
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
KGQV T YR + +GG+ W ++ ATV+ + K + + I+C+N+
Sbjct: 291 KGQVSTSRYRFLANHGGFVWAETQATVLYNGKTSQPEAIVCLNF 334
>gi|118344038|ref|NP_001071842.1| transcription factor protein [Ciona intestinalis]
gi|70571397|dbj|BAE06738.1| transcription factor protein [Ciona intestinalis]
Length = 753
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
+SLDGF F L DGRFL++S+TVSIYLGL+Q +I
Sbjct: 157 QSLDGFIFVLNKDGRFLFVSDTVSIYLGLAQVDLI 191
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 20/100 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QV++ G+S+F+Y H ADH EL + L S H + +S++ + T+
Sbjct: 185 LAQVDLIGTSIFNYTHPADHPELVDHLK-NRSNSHHNITRNFHSSDKNEELEADTS---- 239
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
C SF IRMKSTLT+RG + KS GY+
Sbjct: 240 -------------SC--SFFIRMKSTLTRRGSNVKSIGYK 264
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK-NADEQNIICVNYVI 192
+++KGQV+T YYR + K+G + W+QSC T+V ++D+ I ++YV+
Sbjct: 375 ILSKGQVVTPYYRWLLKSGKHLWLQSCVTIVVDKHLSSDDDMFIWISYVL 424
>gi|148372331|gb|ABQ63087.1| hypoxia-inducible factor-1alpha [Callinectes sapidus]
Length = 497
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++NKGQV T YR + + GGY W+ + AT++ + Q ++C+NYV+S E I+
Sbjct: 257 LLNKGQVETSRYRFLARGGGYVWLVTQATLIHGPRENKPQYVVCLNYVVSEVESSGEILS 316
Query: 204 CCQL 207
QL
Sbjct: 317 EFQL 320
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 23/102 (22%)
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSG------------YRSLDGFA 117
D +S+M L+ ++ + RS C ++ LTKR K SG ++LDGF
Sbjct: 33 DKASIMRLTIANLHF---RSVC---ETGLTKR---IKGSGGSKLDLEMDEHHLKALDGFL 83
Query: 118 FALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMN 159
+ +DGR +Y SE + +LG Q +V+ G L HY +++
Sbjct: 84 LVVSTDGRVIYTSENIVSFLGHHQEEVM--GSSLYHYTNMVD 123
>gi|242022671|ref|XP_002431762.1| Hypoxia-inducible factor 1 alpha, putative [Pediculus humanus
corporis]
gi|212517087|gb|EEB19024.1| Hypoxia-inducible factor 1 alpha, putative [Pediculus humanus
corporis]
Length = 368
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 89/241 (36%), Gaps = 98/241 (40%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I QV+M G+S++++ H DH E+ E L + SP T + P
Sbjct: 165 ISQVDMMGNSIYEFSHPCDHEEIREVLSI--------KSP------------TESIIP-- 202
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL-----------DGFAF 118
RSF +R+K TLT +G + KS+ Y+ + F
Sbjct: 203 ----------------RSFFVRLKCTLTSKGRNVNLKSATYKVIHYVDDAASNAPQHFLI 246
Query: 119 ALGS-----------------------DGRFLYISETVSIYLGLSQWQVI---------- 145
A+G D +F Y + + +LG + +I
Sbjct: 247 AIGEPIPHPSNIEIPLDKQTFLSKHSLDMKFTYADDKMVEFLGYNPEDLIGKSIFDFYHA 306
Query: 146 --------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191
+KGQ T YR + K GG WV + ATV+ SK +++CVN+V
Sbjct: 307 MDSEAVDRGFKTLFSKGQCETGRYRFLAKGGGCVWVLTQATVIYDSKGQKPNSVVCVNFV 366
Query: 192 I 192
I
Sbjct: 367 I 367
>gi|221046761|pdb|3F1N|A Chain A, Crystal Structure Of A High Affinity Heterodimer Of Hif2
Alpha And Arnt C-Terminal Pas Domains, With Internally
Bound Ethylene Glycol.
gi|221046763|pdb|3F1O|A Chain A, Crystal Structure Of The High Affinity Heterodimer Of Hif2
Alpha And Arnt C-Terminal Pas Domains, With An
Internally- Bound Artificial Ligand
gi|221046765|pdb|3F1P|A Chain A, Crystal Structure Of A High Affinity Heterodimer Of Hif2
Alpha And Arnt C-Terminal Pas Domains
gi|283806888|pdb|3H7W|A Chain A, Crystal Structure Of The High Affinity Heterodimer Of Hif2
Alpha And Arnt C-Terminal Pas Domains With The
Artificial Ligand Ths017
gi|283806891|pdb|3H82|A Chain A, Crystal Structure Of The High Affinity Heterodimer Of Hif2
Alpha And Arnt C-Terminal Pas Domains With The
Artificial Ligand Ths020
gi|453056112|pdb|4GHI|A Chain A, Crystal Structure Of The High Affinity Heterodimer Of Hif2
Alpha And Arnt C-terminal Pas Domains In Complex With A
Benzoxadiazole Antagonist
Length = 117
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E
Sbjct: 59 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIE 115
>gi|159162817|pdb|1P97|A Chain A, Nmr Structure Of The C-Terminal Pas Domain Of Hif2a
Length = 114
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E
Sbjct: 56 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIE 112
>gi|114793377|pdb|2A24|A Chain A, Haddock Structure Of Hif-2aARNT PAS-B Heterodimer
Length = 107
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E
Sbjct: 55 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIE 107
>gi|321453024|gb|EFX64305.1| hypothetical protein DAPPUDRAFT_13455 [Daphnia pulex]
Length = 323
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 59/224 (26%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLG-----------------LSQGHGLASPGSA 54
+LQ+++ G S +DY H DH EL E L L +++ +P
Sbjct: 109 LLQMDLIGQSFYDYCHPCDHDELREMLALRPDGDPARSFCLRFKSALMAKKRSKINPKFV 168
Query: 55 NSEE-GSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+ G ++T T N + +L LSSS+++ F + + + C G
Sbjct: 169 PYKVYGQMLDTTTTNCILIAL--LSSSTNH------FLVLIVDPIPHPSCTKTPLG---- 216
Query: 114 DGFAFALGS--DGRFLYISETVSIYLG-----------------------LSQWQ-VINK 147
G++F D ++ Y+ E + +LG L ++ + K
Sbjct: 217 -GYSFLTKHTLDMKYTYVDEKIYTFLGYTPEDLKGRSAYELHHAQDNETVLKNYKAMFAK 275
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNA--DEQNIICVN 189
GQ+ YR + K GGY WVQ+ AT+V +N + ++CV+
Sbjct: 276 GQMQVPAYRFLAKQGGYAWVQTQATLVVYGQNRHFRTEAVVCVH 319
>gi|410910012|ref|XP_003968484.1| PREDICTED: neutral amino acid transporter B(0)-like [Takifugu
rubripes]
Length = 277
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGF F + +GRFLYISETVSIYLGLSQ V
Sbjct: 8 QSLDGFVFVVSHEGRFLYISETVSIYLGLSQAMV 41
>gi|380039564|gb|AFD32326.1| hypoxia-inducible factor 2 alpha, partial [Acipenser persicus]
Length = 183
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSC 170
RS+ F AL SD + S + KGQ ++ YR++ K+GGY W+ +
Sbjct: 111 RSVYEFYHALDSDS------------MTKSHQNLCTKGQAVSSQYRMLAKHGGYVWLVAQ 158
Query: 171 ATVVCSSKNADEQNIICVNYVIS 193
TV+ +++N+ Q I+CVNYV+S
Sbjct: 159 GTVIYNTRNSHPQCIVCVNYVLS 181
>gi|194388242|dbj|BAG65505.1| unnamed protein product [Homo sapiens]
Length = 339
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++I + E
Sbjct: 237 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLIRWKRPEW---- 292
Query: 204 CC 205
CC
Sbjct: 293 CC 294
>gi|357612627|gb|EHJ68091.1| hypothetical protein KGM_02224 [Danaus plexippus]
Length = 62
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 139 LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
L W++ GQ T YR + K GGY WVQ+ ATV+ + K ++ICVNYVI
Sbjct: 9 LPVWRIATFGQCETGQYRFLAKKGGYAWVQTQATVI-TDKQQKPISVICVNYVI 61
>gi|283462262|gb|ADB22425.1| hypoxia inducible factor [Saccoglossus kowalevskii]
Length = 544
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI-SGREYENFIMDCCQLEDYIQQ 213
YR + K GGY WVQ+ ATV+ +++ + Q I+ VNYV+ SG E E+ ++ Q Q
Sbjct: 3 YRFLAKKGGYVWVQTQATVIYNNRTSKPQCIVSVNYVLSSGVEKEDLVLSTEQ-----QM 57
Query: 214 RGVKREE 220
+G+ + +
Sbjct: 58 KGLPKSK 64
>gi|122892549|gb|ABM67323.1| EPAS1 [Hylobates klossii]
Length = 81
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 147 KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+
Sbjct: 36 KGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVL 81
>gi|427795919|gb|JAA63411.1| Putative hypoxia-inducible factor 1 alpha subunit basic
helix-loop-helix transcription factor b, partial
[Rhipicephalus pulchellus]
Length = 575
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC-SSKNADEQNIICVNYVISGREYENFIM 202
V KGQ T YR + K+GG WV + AT++ +S + Q ++CVNYV+SG ++ ++
Sbjct: 21 VFAKGQCETGQYRFLAKHGGCVWVLTQATLIYENSSCSKPQCVVCVNYVLSGASGKHEVL 80
Query: 203 DCCQLEDYIQQRGVKREEP 221
E + VK +EP
Sbjct: 81 ----AEQQLTSTAVKPKEP 95
>gi|318037285|ref|NP_001187141.1| hypoxia induced factor-like factor [Ictalurus punctatus]
gi|73426664|gb|AAZ75953.1| hypoxia induced factor-like factor [Ictalurus punctatus]
Length = 627
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQV T++YR NGG+ W ++ V+ +S+ + + ++C+N+++S E + +
Sbjct: 286 LLSKGQVCTYHYRFWLVNGGFVWTETHVHVLYNSRTSQPEAVVCLNFILSAVEEADTVFS 345
Query: 204 CCQLEDYIQQ 213
Q + Q
Sbjct: 346 VEQTRSEVNQ 355
>gi|427795917|gb|JAA63410.1| Putative hypoxia-inducible factor 1 alpha subunit basic
helix-loop-helix transcription factor b, partial
[Rhipicephalus pulchellus]
Length = 575
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC-SSKNADEQNIICVNYVISGREYENFIM 202
V KGQ T YR + K+GG WV + AT++ +S + Q ++CVNYV+SG ++ ++
Sbjct: 21 VFAKGQCETGQYRFLAKHGGCVWVLTQATLIYENSSCSKPQCVVCVNYVLSGASGKHEVL 80
Query: 203 DCCQLEDYIQQRGVKREEP 221
E + VK +EP
Sbjct: 81 ----AEQQLTSTAVKPKEP 95
>gi|143347245|gb|ABO93219.1| Sim [Platynereis dumerilii]
Length = 224
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 81/229 (35%), Gaps = 97/229 (42%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L + P S
Sbjct: 23 QVELTGNSIYEYIHPADHDEMTALLTVH--------------------------QPYHSH 56
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKS--------SGYRSL----------DG 115
++ + Y+ +RSF +RMK L KR S SGY + DG
Sbjct: 57 MLQGNMPQEYE-LERSFFLRMKCVLAKRNAGLTSGGYKVIHCSGYLKIKQFTMDMAPFDG 115
Query: 116 ----------------------------FAFALGSDGRFLYISETVS------------- 134
F F D + +++ V+
Sbjct: 116 CYQNVGMVAVGHSLPPSAITEIKMYSNMFMFRASLDLKLIFLDARVAQVTGYEPQDIIEK 175
Query: 135 -----------IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCAT 172
+++ + ++ KGQV T YYR + K+GG+ WVQS AT
Sbjct: 176 TLYHYIHACDILHMRYAHHTLLIKGQVTTKYYRFLAKDGGWVWVQSYAT 224
>gi|380025288|ref|XP_003696409.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Apis florea]
Length = 580
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 24/92 (26%)
Query: 125 RFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNK 160
+F Y E ++ YLG S +++ +KGQ T YR + K
Sbjct: 488 KFTYADEKLAEYLGWSSEELVGQSVFEFYHALDNLALDKSFKSLFSKGQCETVAYRFLGK 547
Query: 161 NGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
GGY WV + AT++ SK +++CVNYV+
Sbjct: 548 RGGYAWVVTQATLIHCSKQQKPLSVVCVNYVL 579
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++L+GF L SDG +Y+SE VS YLG+SQ ++ GQ + Y
Sbjct: 323 KALNGFMLVLSSDGNMIYLSENVSDYLGISQMDMM--GQSVYEY 364
>gi|351698817|gb|EHB01736.1| Single-minded-like protein 2 [Heterocephalus glaber]
Length = 689
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN------------------- 184
++ KGQV T YYRL++K GG+ WVQS ATVV ++++
Sbjct: 379 LLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNNRSXXXXXXXXXXXXXXXXXXXXXXXS 438
Query: 185 -----IICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 439 SRPHCIVSVNYVLTDIEYKELQLSLEQV 466
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 181 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 211
>gi|307192541|gb|EFN75729.1| Hypoxia-inducible factor 1 alpha [Harpegnathos saltator]
Length = 765
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+ +KGQ T YR + K GGY WV + AT++ SK +++CVNY++
Sbjct: 716 LFSKGQCETVAYRFLGKRGGYAWVVTQATLIHCSKQQKPISVVCVNYIL 764
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++L+GF L SDG +Y+SE VS YLG+SQ ++ GQ + Y
Sbjct: 509 KALNGFMLVLSSDGNMVYLSENVSDYLGVSQMDMM--GQSVYEY 550
>gi|332023564|gb|EGI63800.1| Hypoxia-inducible factor 1 alpha [Acromyrmex echinatior]
Length = 730
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 24/92 (26%)
Query: 125 RFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNK 160
+F Y E ++ YLG S +++ +KGQ T YR + K
Sbjct: 638 KFTYADEKLAEYLGWSSEELMGRSVFEFYHALDNLALDKCFKCLFSKGQCETVAYRFLGK 697
Query: 161 NGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
GGY WV + AT++ SK +++CVNY++
Sbjct: 698 RGGYAWVITQATLIHCSKQQKPISVVCVNYIL 729
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
++L+GF L SDG +Y+SE V YLG+SQ ++ GQ + Y
Sbjct: 474 KALNGFMLVLSSDGNMVYLSENVRDYLGVSQMDMM--GQSVYEY 515
>gi|170575332|ref|XP_001893196.1| PAS domain containing protein [Brugia malayi]
gi|158600927|gb|EDP37971.1| PAS domain containing protein [Brugia malayi]
Length = 373
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 86/247 (34%), Gaps = 87/247 (35%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+ GSS+FD++H+ D EL L NT SS
Sbjct: 100 QVELIGSSIFDFLHRDDEPELRYILS-----------------------NTDFNCTTTSS 136
Query: 74 LMSLSSSSSYKG-CDRSFCIRMKSTLTKRGCHFKSSGYRSL----------DG------- 115
S +S+ SY +R F IR+K L KR +GY+++ DG
Sbjct: 137 QFSTNSNQSYNDEIERMFFIRLKCVLPKRNAGIIYNGYKTISCWGYSKICHDGERITNMG 196
Query: 116 ----------------------FAFALGSDGRFLYISETVSIYLGL--------SQWQVI 145
F F D +++ V+ G S +Q++
Sbjct: 197 LLAVGYMLTRSGITELKLSSSTFMFRARLDLNIIFVDSRVTALTGFGASSLLDTSLYQMV 256
Query: 146 ----------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVN 189
+K Q T YYRL+++ GY W QS +V + I+ V
Sbjct: 257 LLEDAHTIEKAHKILLHKNQSTTGYYRLLHRIRGYVWAQSQFCIVPMLRATITHCIVAVT 316
Query: 190 YVISGRE 196
+ S RE
Sbjct: 317 EIFSKRE 323
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
++LDGF L + G+ +Y+S T S++LGLSQ ++I
Sbjct: 70 QTLDGFVLILDATGKMMYVSXTASVHLGLSQVELI 104
>gi|260822401|ref|XP_002606590.1| hypothetical protein BRAFLDRAFT_72659 [Branchiostoma floridae]
gi|229291934|gb|EEN62600.1| hypothetical protein BRAFLDRAFT_72659 [Branchiostoma floridae]
Length = 351
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 132 TVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191
T + S Q+I+ GQ + YYR M K G + W+Q+ AT++ + Q ++C+NYV
Sbjct: 40 TAQMCTQASLLQMIHAGQSTSKYYRFMGKLGDWIWMQTRATII-YNTGGSAQYVVCMNYV 98
Query: 192 ISGREYENFIMD 203
+S E ++
Sbjct: 99 VSENEARRATVE 110
>gi|427794751|gb|JAA62827.1| Putative hypoxia-inducible factor 1 alpha subunit basic
helix-loop-helix transcription factor b, partial
[Rhipicephalus pulchellus]
Length = 988
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC-SSKNADEQNIICVNYVISGREYENFIM 202
+ KGQ T YR + K+GG WV + AT++ +S + Q ++CVNYV+SG ++ ++
Sbjct: 434 LFAKGQCETGQYRFLAKHGGCVWVLTQATLIYENSSCSKPQCVVCVNYVLSGASGKHEVL 493
Query: 203 DCCQLEDYIQQRGVKREEP 221
E + VK +EP
Sbjct: 494 ----AEQQLTSTAVKPKEP 508
>gi|47185405|emb|CAF92900.1| unnamed protein product [Tetraodon nigroviridis]
Length = 111
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTH 153
++LDGF F + DG+ +YISET S++LGLSQ ++ ++ H
Sbjct: 57 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVPLLRSARLFLH 99
>gi|326913304|ref|XP_003202979.1| PREDICTED: single-minded homolog 2-like [Meleagris gallopavo]
Length = 747
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 93 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 126
>gi|326670907|ref|XP_003199315.1| PREDICTED: single-minded homolog 2-like, partial [Danio rerio]
Length = 116
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ LYISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKILYISETASVHLGLSQ 116
>gi|359062832|ref|XP_003585756.1| PREDICTED: single-minded homolog 2-like [Bos taurus]
Length = 228
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQ 116
>gi|312385359|gb|EFR29881.1| hypothetical protein AND_00864 [Anopheles darlingi]
Length = 333
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+I+KGQ T YR + K GGY WV + ATV+ + +I+CVNYVI
Sbjct: 286 IISKGQSETCRYRFLAKTGGYAWVVTQATVIYDKQK--PHSIVCVNYVI 332
>gi|194226235|ref|XP_001916348.1| PREDICTED: single-minded homolog 2 [Equus caballus]
Length = 488
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|443692247|gb|ELT93887.1| hypothetical protein CAPTEDRAFT_107169 [Capitella teleta]
Length = 106
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+I+KG ++ YYR + K G + W+Q+ AT++ S+ N Q ++C+NYVI
Sbjct: 58 LIHKGTSVSKYYRFLGKTGEWVWMQTRATIIFSAGNR-PQYVVCMNYVI 105
>gi|1408537|dbj|BAA12919.1| Sim [Homo sapiens]
Length = 247
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>gi|47210693|emb|CAF93762.1| unnamed protein product [Tetraodon nigroviridis]
Length = 186
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 47/168 (27%)
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSG-------------YRSLDGFA 117
+S L+ L +S + DR IR+ + + K +G L+GF
Sbjct: 19 LSHLLPLQASVR-QSLDRPSVIRLTLSYIRAHALLKGAGEVQGEVQEETRLFLSVLEGFL 77
Query: 118 FALGSDGRFLYISETVSIYLGLSQWQVI-----------NKGQVLTHY------------ 154
L + G +++SE VS ++GL+Q +++ + ++ TH
Sbjct: 78 MVLSTGGDVVFVSENVSQHMGLTQAELMGHNVFEFTHPCDHEEIRTHLRLTAVCLKSLSV 137
Query: 155 ---YRLMNKNGGYTWVQSCATVV-----CSSKNADEQN--IICVNYVI 192
YR++ K GGY WV++ VV S+ A Q ++CV YV+
Sbjct: 138 SGRYRVLAKGGGYVWVETHGAVVPGVQPSRSRPAAPQRLCVLCVTYVL 185
>gi|170035204|ref|XP_001845461.1| hypoxia-inducible factor [Culex quinquefasciatus]
gi|167877013|gb|EDS40396.1| hypoxia-inducible factor [Culex quinquefasciatus]
Length = 376
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVI 192
+I+KGQ T YR + + GGY WV + AT++ + +I+CVNYVI
Sbjct: 329 LISKGQSETARYRFLARTGGYAWVVTQATLIYDKQKP--HSIVCVNYVI 375
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 27/104 (25%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I Q++M G ++DY HQ DH EL E L + S + G AN D
Sbjct: 133 IAQIDMMGQPIWDYSHQCDHEELREAL--------------NGRHHSPSELVKGVANSDC 178
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+ R F +R+K TLT RG + KS+ Y+ +
Sbjct: 179 KPQET-----------RDFFLRLKCTLTSRGRSVNIKSASYKVI 211
>gi|380749783|gb|AFE48634.1| single-minded protein, partial [Euperipatoides kanangrensis]
Length = 199
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L + H S ++ +GS + +P
Sbjct: 82 QVELTGNSIYEYIHPADHDEMTAILTMHQPCHH------SHHALQGSILPEEAYSPRALD 135
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+RSF +RMK L KR S GY+ +
Sbjct: 136 F----------EIERSFFLRMKCVLAKRNAGLTSGGYKVI 165
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 101 RGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
R C K G ++LDGF F + DG+ +YISET ++LGLSQ ++
Sbjct: 39 RECSIKELGSHLLQTLDGFIFVVAPDGKIMYISETAPVHLGLSQVEL 85
>gi|971470|emb|CAA59261.1| unnamed protein product [Homo sapiens]
gi|1088453|dbj|BAA07907.1| Sim protein [Homo sapiens]
Length = 30
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+LDGF F + SDG+ +YISET S++LGLSQ
Sbjct: 1 TLDGFVFVVASDGKIMYISETASVHLGLSQ 30
>gi|47204443|emb|CAG13520.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 108 SGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
S +LDGF F + DG+ +YISET S++LGLSQ
Sbjct: 90 SNVHTLDGFVFVVAPDGKIMYISETASVHLGLSQ 123
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 32/100 (32%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG+S+++Y+H ADH ELA L TA+P
Sbjct: 144 VPQVELTGNSIYEYVHPADHEELAAVL---------------------------TAHPPC 176
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR 111
S Y+ +RSF +RMK L KR GY+
Sbjct: 177 HSHF----FHEYEA-ERSFFLRMKCVLAKRNAGLTCGGYK 211
>gi|170581956|ref|XP_001895915.1| hypothetical protein [Brugia malayi]
gi|158596999|gb|EDP35241.1| conserved hypothetical protein [Brugia malayi]
Length = 759
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 12 ILQVEMTGSSVFDYIHQADHTE-LAEQLGLGLSQGHGLASP---GSANSEEGSGMNTGTA 67
+ Q ++TG S+ ++IH D+ E ++ +G + +G+G S S G +N A
Sbjct: 118 LTQTDLTGRSLKEFIHTNDYEEYISCDIGGAIDRGNGQVRTLRMKSVISPRGRNLNLKNA 177
Query: 68 --NPDVSSLMSL----------SSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-- 113
P V + SL +S+ G S ++T + G + Y
Sbjct: 178 LFKPVVCYIRSLCADNGRVRVIQASAQPAGQGSSVFTTSRTTDVQSGTYMTRHTYDMKFS 237
Query: 114 ---DGFAFALGSDGR---------FLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKN 161
+ F + L + R +Y ++ ++ + + + ++ KG T YYRL+ N
Sbjct: 238 YVSESFNYILRHEARSLMGTSFYNLVYPADLNAVVVSIRE--MLTKGHTRTPYYRLIGLN 295
Query: 162 GGYTWVQSCATVVC-SSKNADEQNIICVNYVI-SGREYENFI 201
WVQ+ AT+V ++K Q IICV+ +I + E ++FI
Sbjct: 296 KSVLWVQTEATIVNHTAKGQKGQYIICVHQLIGTQSERDSFI 337
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 94 MKSTLTK--RGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+K+ LT+ R +++ LDGF + DG LY+SE+VSIYLGL+Q
Sbjct: 71 LKTNLTEEHRCLWSETTLLECLDGFLAIVDLDGIILYVSESVSIYLGLTQ 120
>gi|312378389|gb|EFR24977.1| hypothetical protein AND_10079 [Anopheles darlingi]
Length = 478
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 87 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 120
>gi|20146638|gb|AAM12473.1|AF433668_1 hypoxia-inducible factor alpha-like protein [Fundulus heteroclitus]
Length = 235
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIM 202
+V T YR + GG+ W ++ ATV+ ++K + + ++C+N+++S E + +
Sbjct: 1 ARVNTSRYRFLANGGGFVWAETQATVLYNNKTSQPEAVVCLNFILSAVEQPDVVF 55
>gi|47203046|emb|CAG14839.1| unnamed protein product [Tetraodon nigroviridis]
Length = 141
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGYRSL 113
+RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 16 ERSFFIRMKSTLTKRGVHIKSSGYKVI 42
>gi|270001312|gb|EEZ97759.1| hypothetical protein TcasGA2_TC016204 [Tribolium castaneum]
Length = 438
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 284 QTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 317
>gi|333610041|gb|AEF59497.1| hypoxia-inducible factor 2 alpha [Lepisosteus oculatus]
Length = 315
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L QG G ++ +NT
Sbjct: 112 LTQVELTGHSIFDFTHPCDHDEIRENLSFKPGQGFG---------KKNKDLNT------- 155
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+R F +RMK T+T RG + KS+ ++ L
Sbjct: 156 ---------------ERDFFMRMKCTVTSRGRTVNLKSASWKVL 184
>gi|241832198|ref|XP_002414891.1| hypoxia-inducible factor 1 alpha, hif-1 alpha, putative [Ixodes
scapularis]
gi|215509103|gb|EEC18556.1| hypoxia-inducible factor 1 alpha, hif-1 alpha, putative [Ixodes
scapularis]
Length = 72
Score = 45.8 bits (107), Expect = 0.022, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 146 NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE-QNIICVNYVISGREYE 198
+KGQ T YR ++K+GGY WV + AT++ + + Q ++CVNYV+S +E+E
Sbjct: 2 SKGQCETGQYRFLSKHGGYVWVLTQATLIYENNSCSRPQCVVCVNYVLS-QEHE 54
>gi|121222040|gb|ABM47604.1| SIM1 [Saguinus labiatus]
gi|122053840|gb|ABM65900.1| SIM1 [Ateles geoffroyi]
gi|122934874|gb|ABM68178.1| SIM1 [Lagothrix lagotricha]
gi|124054140|gb|ABM89258.1| SIM1 [Pongo pygmaeus]
Length = 30
Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+LDGF F + DG+ +YISET S++LGLSQ
Sbjct: 1 TLDGFIFVVAPDGKIMYISETASVHLGLSQ 30
>gi|58332032|ref|NP_001011165.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Xenopus (Silurana) tropicalis]
gi|54648070|gb|AAH84989.1| hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix
transcription factor) [Xenopus (Silurana) tropicalis]
Length = 328
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 81/218 (37%), Gaps = 71/218 (32%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH EL E L +G A G E
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELREMLTFR----NGPAKKGKEQITERSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDV---SSLMSLSSSSSYKGC---------------------DRSFCIR 93
G +N +A V + M + ++++ C + F +
Sbjct: 178 RGRTVNIKSATWKVLHCTGHMRVYDANNHNHCGYKKPPMTCMVIICEPIPHPSNIEFPLD 237
Query: 94 MKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVSIY 136
K+ L++ K S GY RS+ + AL SD +
Sbjct: 238 SKTFLSRHSLDMKFSYCDERVTELVGYEPDELLGRSVYEYYHALDSD------------H 285
Query: 137 LGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174
L + + KGQV T YR++ K GGY WV++ AT +
Sbjct: 286 LTKAHHNMFTKGQVTTGQYRMLAKKGGYVWVETQATPI 323
>gi|324504444|gb|ADY41921.1| Hypoxia-inducible factor 1-alpha [Ascaris suum]
Length = 832
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
SLDGF + SDG LYI+E+VSIYLGL+Q + +
Sbjct: 102 SLDGFMAIIDSDGVILYITESVSIYLGLTQTDLTGR 137
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 22/149 (14%)
Query: 98 LTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIY-------LGLSQWQVINKGQV 150
+T+ C K S Y S + F + L + R L + S+ + S ++++KG
Sbjct: 235 MTRHTCDMKFS-YVS-ESFNYILRHEARSLMGTSFYSLVHPADINAVAASMREMLSKGHT 292
Query: 151 LTHYYRLMNKNGGYTWVQSCATVVC-SSKNADEQNIICVNYVI-SGREYENFIM--DCCQ 206
T YYRL+ WVQ+ AT V +SK Q +ICV+ ++ + E E+F++ D C
Sbjct: 293 RTPYYRLIGAGRTVVWVQTEATTVNHTSKGHKGQYVICVHELLGTQNELESFMVGRDSCL 352
Query: 207 LEDYIQQRGVKREEPSNNDPENDSPDADR 235
Q VK+E +DSPD+ +
Sbjct: 353 TSGSSVQ--VKKE-------LDDSPDSRK 372
>gi|306518490|dbj|BAJ17131.1| hypoxia inducible factor 1, alpha subunit [Ascaris suum]
Length = 832
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
SLDGF + SDG LYI+E+VSIYLGL+Q + +
Sbjct: 102 SLDGFMAIIDSDGVILYITESVSIYLGLTQTDLTGR 137
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 22/149 (14%)
Query: 98 LTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIY-------LGLSQWQVINKGQV 150
+T+ C K S Y S + F + L + R L + S+ + S ++++KG
Sbjct: 235 MTRHTCDMKFS-YVS-ESFNYILRHEARSLMGTSFYSLVHPADINAVAASMREMLSKGHT 292
Query: 151 LTHYYRLMNKNGGYTWVQSCATVVC-SSKNADEQNIICVNYVI-SGREYENFIM--DCCQ 206
T YYRL+ WVQ+ AT V +SK Q +ICV+ ++ + E E+F++ D C
Sbjct: 293 RTPYYRLIGAGRTVVWVQTEATTVNHTSKGHKGQYVICVHELLGTQNELESFMVGRDSCL 352
Query: 207 LEDYIQQRGVKREEPSNNDPENDSPDADR 235
Q VK+E +DSPD+ +
Sbjct: 353 TSGSSVQ--VKKE-------LDDSPDSRK 372
>gi|308486301|ref|XP_003105348.1| CRE-HIF-1 protein [Caenorhabditis remanei]
gi|308256856|gb|EFP00809.1| CRE-HIF-1 protein [Caenorhabditis remanei]
Length = 732
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDG 124
GT N + S++ + S R C + ++ + + S ++L G +F
Sbjct: 216 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSF------ 269
Query: 125 RFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE-Q 183
+ + +G S ++ KG + T YYRL+ N W+Q+ AT + + + Q
Sbjct: 270 -YDLVHPADMTIVGKSMKELFTKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKGQ 328
Query: 184 NIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
+ICV+YV+ + E ++ C Q +K+E
Sbjct: 329 YVICVHYVLGIQGAEESLVVCTDAMPAGMQVDIKKE 364
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF + SD LY++E+V++YLGL+Q
Sbjct: 94 LDGFVMIVDSDSSILYVTESVALYLGLTQ 122
>gi|124013527|gb|ABM88008.1| SIM1 [Macaca nemestrina]
Length = 95
Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+LDGF F + DG+ +YISET S++LGLSQ
Sbjct: 1 TLDGFIFVVAPDGKIMYISETASVHLGLSQ 30
>gi|393905996|gb|EJD74135.1| Sim1b long isoform [Loa loa]
Length = 374
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 87/246 (35%), Gaps = 84/246 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+ GSS+FD++H+ D EL L S + + N S+
Sbjct: 100 QVELIGSSIFDFLHRDDEPELRYIL---------------------SSTDFNSINQITSN 138
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----------DG-------- 115
+ ++ S +R F IR+K L KR +GY+++ DG
Sbjct: 139 NTNNNNQSFNDEIERMFFIRLKCVLPKRNAGIIYNGYKTISCWGYSKICRDGERITNMGL 198
Query: 116 ---------------------FAFALGSDGRFLYISETVSIYLGL--------SQWQVI- 145
F F D +++ V+ G S +Q++
Sbjct: 199 LAVGYMLTRSGITELKLSSSTFMFRARLDLNIIFVDSRVTALTGFGASSLLDTSLYQMVL 258
Query: 146 ---------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
+K Q T YYRL+++ GY W QS +V + I+ V
Sbjct: 259 LEDVHTIEKAHKILLHKNQSTTGYYRLLHRIRGYVWAQSQFCIVPMLRATVTHCIVAVTE 318
Query: 191 VISGRE 196
++S RE
Sbjct: 319 ILSKRE 324
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
++LDGF L + G+ +Y+SET S++LGLSQ ++I
Sbjct: 70 QTLDGFVLILDATGKMMYVSETASVHLGLSQVELI 104
>gi|157112802|ref|XP_001657624.1| hypoxia-inducible factor [Aedes aegypti]
gi|108868294|gb|EAT32521.1| AAEL015383-PA [Aedes aegypti]
Length = 317
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
K L + + SLDGF L +DG YISE VS YLGLSQ ++ GQ + Y
Sbjct: 97 KPALNELALEKEKLALLSLDGFLLVLSADGDITYISENVSDYLGLSQIDMM--GQPIWDY 154
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 27/102 (26%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q++M G ++DY HQ DH EL E L + H SP S + G AN D
Sbjct: 143 QIDMMGQPIWDYSHQCDHEELREALN---GRHH---SP--------SELLKGVANSDCKP 188
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+ +R F +R+K TLT RG + KS+ Y+ +
Sbjct: 189 ME-----------NRDFFLRLKCTLTSRGRSVNIKSASYKVI 219
>gi|341886645|gb|EGT42580.1| CBN-HLH-34 protein [Caenorhabditis brenneri]
Length = 322
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
H+ S+ LDGF L G LYISET+SIYLGLSQ ++
Sbjct: 84 HWTSNHLDLLDGFFVILDRRGDVLYISETISIYLGLSQVEM 124
>gi|164600781|gb|ABY61821.1| hypoxia-inducible factor 1 alpha subunit [Ovis aries]
Length = 148
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 52 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQ------------- 94
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
RSF +RMK TLT RG + KS+ ++ L
Sbjct: 95 ----------------RSFFVRMKCTLTSRGRTMNIKSATWKVL 122
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 24 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 57
>gi|402590032|gb|EJW83963.1| hypothetical protein WUBG_05126, partial [Wuchereria bancrofti]
Length = 321
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 33/210 (15%)
Query: 14 QVEMTGSSVFDYIHQADHTE-LAEQLGLGLSQGHGLASP---GSANSEEGSGMNTGTA-- 67
Q ++TG S+ ++IH D+ E ++ G + +G G S S G +N A
Sbjct: 114 QTDLTGRSLKEFIHTNDYEEYISCDTGGAIDRGSGRVHTLRMKSVISPRGRNLNLKNALF 173
Query: 68 NPDVSSLMSLSSS-----------------SSYKGCDRSFCIRMKSTLTKRGCHFKSSGY 110
P V + SL + SS RS +R + +T+ K S Y
Sbjct: 174 KPVVCYIRSLCADNGRVRVIQASAQPAGQGSSVFTTSRSTDVRNGTYMTRHTYDMKFS-Y 232
Query: 111 RSLDGFAFALGSDGRFLYISETVSIY-------LGLSQWQVINKGQVLTHYYRLMNKNGG 163
S + F + L + R L + ++ + +S +++ KG T YYRL+ N
Sbjct: 233 VS-ESFNYILRHEARSLMGTSFYNLVYPADLNVVVVSIREMLTKGHTRTPYYRLIGLNKS 291
Query: 164 YTWVQSCATVVC-SSKNADEQNIICVNYVI 192
WVQ+ AT+V ++K Q IICV+ +I
Sbjct: 292 VLWVQTEATIVNHTAKGQKGQYIICVHQLI 321
>gi|25150916|ref|NP_506391.2| Protein HLH-34 [Caenorhabditis elegans]
gi|33112438|sp|P90953.3|HLH34_CAEEL RecName: Full=Helix-loop-helix 34
gi|14028833|gb|AAK52515.1|AF370362_1 putative transcription factor T01D3.2 [Caenorhabditis elegans]
gi|20338943|emb|CAB03258.2| Protein HLH-34 [Caenorhabditis elegans]
Length = 322
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQV 150
LDGF L G LYISET+SIYLGLSQ ++ V
Sbjct: 93 LDGFFVILDRRGDVLYISETISIYLGLSQVEMTGNAMV 130
>gi|170595254|ref|XP_001902308.1| hypoxia-induced factor 1 [Brugia malayi]
gi|158590086|gb|EDP28843.1| hypoxia-induced factor 1, putative [Brugia malayi]
Length = 97
Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 70 DVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----DGFAFALGSDGR 125
D+ ++ + ++ DR +R+ TL C + +SL DGF + DG
Sbjct: 26 DLKVVIPIVDEATVTHVDRIAILRVALTL----CRLRKVATKSLLECLDGFLAIVDLDGI 81
Query: 126 FLYISETVSIYLGLSQ 141
LY+SE+VSIYLGL+Q
Sbjct: 82 ILYVSESVSIYLGLTQ 97
>gi|193207991|ref|NP_508008.4| Protein HIF-1, isoform a [Caenorhabditis elegans]
gi|385178639|sp|G5EGD2.1|HIF1_CAEEL RecName: Full=Hypoxia-inducible factor 1; AltName:
Full=Hypoxia-induced factor 1
gi|14475858|gb|AAK62778.1| hypoxia-induced factor 1 [Caenorhabditis elegans]
gi|169402799|emb|CAB07380.2| Protein HIF-1, isoform a [Caenorhabditis elegans]
Length = 719
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAF-ALGSD 123
GT N + S++ + S R C + ++ + + S ++L G +F L
Sbjct: 216 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHP 275
Query: 124 GRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE- 182
+ +S+++ ++ KG + T YYRL+ N W+Q+ AT + + +
Sbjct: 276 ADMMIVSKSMK--------ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKG 327
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
Q +ICV+YV+ + E ++ C Q +K+E
Sbjct: 328 QYVICVHYVLGIQGAEESLVVCTDSMPAGMQVDIKKE 364
>gi|317419554|emb|CBN81591.1| Endothelial PAS domain-containing protein [Dicentrarchus labrax]
Length = 361
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 104/248 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+ G ++F++ H DH E+ L
Sbjct: 145 LTQTELMGHNIFEFTHPGDHDEIRSNL--------------------------------- 171
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYR------------------ 111
L++ + G R F +R+KS LT RG + KS+ ++
Sbjct: 172 ----RLTAEEIWWGAKRDFVLRIKSALTHRGRSANLKSATWKVLHCQGRAKVCLTPSSVS 227
Query: 112 ----------------SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN--------- 146
S+ F D +F Y + V+ LG +++
Sbjct: 228 CLVLTCQPLPLSHMLLSIHTFTSQHSMDMKFTYCDQRVTSLLGYRPEELLGRSIYNLCHT 287
Query: 147 ---------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ-------N 184
K Q ++ YR++ KNGGY WV+S + V+ S + + +
Sbjct: 288 LDTKCLTKNHLNLCCKSQSVSGQYRMLVKNGGYVWVESHSAVIPSVRPSKSRFSGNQPLC 347
Query: 185 IICVNYVI 192
I+CV YV+
Sbjct: 348 ILCVTYVL 355
>gi|40037190|gb|AAR37392.1| hypoxia-inducible factor 1 alpha [Sus scrofa]
Length = 189
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 93 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQ------------- 135
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
RSF +RMK TLT RG + KS+ ++ L
Sbjct: 136 ----------------RSFFLRMKCTLTSRGRTMNIKSATWKVL 163
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 65 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 98
>gi|193207993|ref|NP_001023891.2| Protein HIF-1, isoform b [Caenorhabditis elegans]
gi|169402798|emb|CAB07381.2| Protein HIF-1, isoform b [Caenorhabditis elegans]
Length = 721
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAF-ALGSD 123
GT N + S++ + S R C + ++ + + S ++L G +F L
Sbjct: 216 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHP 275
Query: 124 GRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE- 182
+ +S+++ ++ KG + T YYRL+ N W+Q+ AT + + +
Sbjct: 276 ADMMIVSKSMK--------ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKG 327
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
Q +ICV+YV+ + E ++ C Q +K+E
Sbjct: 328 QYVICVHYVLGIQGAEESLVVCTDSMPAGMQVDIKKE 364
>gi|392923313|ref|NP_001023894.2| Protein HIF-1, isoform e [Caenorhabditis elegans]
gi|345107443|emb|CCD31074.1| Protein HIF-1, isoform e [Caenorhabditis elegans]
Length = 711
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAF-ALGSD 123
GT N + S++ + S R C + ++ + + S ++L G +F L
Sbjct: 208 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHP 267
Query: 124 GRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQ-SCATVVCSSKNADE 182
+ +S+++ ++ KG + T YYRL+ N W+Q T+ ++K
Sbjct: 268 ADMMIVSKSMK--------ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKG 319
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
Q +ICV+YV+ + E ++ C Q +K+E
Sbjct: 320 QYVICVHYVLGIQGAEESLVVCTDSMPAGMQVDIKKE 356
>gi|268562168|ref|XP_002638515.1| C. briggsae CBR-HIF-1 protein [Caenorhabditis briggsae]
Length = 711
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSAN---------SEEGSGM 62
+ Q ++TG ++ D++H AD+ E +Q L + P N S G +
Sbjct: 114 LTQTDLTGRALRDFLHPADYDEFDKQTKLLHKPKDEESDPNGVNIVLRMKTVISPRGRCL 173
Query: 63 NT----------------------------------GTANPDVSSLMSLSSSSSYKGCDR 88
N GT N + S++ + S R
Sbjct: 174 NLKSALYKSVSFLVHSKVSTGGHVSFMQGITIPAGQGTTNANASAMTKYTESPMGAFTTR 233
Query: 89 SFCIRMKSTLTKRGCHFKSSGYRSLDGFAFA-LGSDGRFLYISETVSIYLGLSQWQVINK 147
C + ++ + + S +SL G +F L G +S+ + ++ K
Sbjct: 234 HTCDMRITFVSDKFNYILKSELKSLMGTSFYDLVHPGDMEIVSKAMK--------ELFAK 285
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE-QNIICVNYVISGREYENFIMDCCQ 206
G T YYRL+ N WVQ+ AT + + + Q +ICV+YV+ + E ++ C
Sbjct: 286 GHNRTPYYRLIAANDTLAWVQTEATTITHTTKGQKGQYVICVHYVLGIQGSEESLVVCTD 345
Query: 207 LEDYIQQRGVKRE 219
Q +K+E
Sbjct: 346 TMPAGMQVDIKKE 358
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF + SD LY++E+V++YLGL+Q
Sbjct: 88 LDGFVLIVDSDSSILYVTESVALYLGLTQ 116
>gi|40037197|gb|AAR37393.1| hypoxia-inducible factor 1 alpha [Ovis aries]
Length = 189
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 93 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQ------------- 135
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
RSF +RMK TLT RG + KS+ ++ L
Sbjct: 136 ----------------RSFFLRMKCTLTSRGRTMNIKSATWKVL 163
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 65 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 98
>gi|71993297|ref|NP_001023893.1| Protein HIF-1, isoform d [Caenorhabditis elegans]
gi|61856186|emb|CAD54141.2| Protein HIF-1, isoform d [Caenorhabditis elegans]
Length = 665
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAF-ALGSD 123
GT N + S++ + S R C + ++ + + S ++L G +F L
Sbjct: 216 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHP 275
Query: 124 GRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE- 182
+ +S+++ ++ KG + T YYRL+ N W+Q+ AT + + +
Sbjct: 276 ADMMIVSKSMK--------ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKG 327
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNND 225
Q +ICV+YV+ + E ++ C Q +K+E D
Sbjct: 328 QYVICVHYVLGIQGAEESLVVCTDSMPAGMQVDIKKEVDDTRD 370
>gi|432939126|ref|XP_004082594.1| PREDICTED: hypoxia-inducible factor 1-alpha-like [Oryzias latipes]
Length = 628
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 99 TKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
T+ F SS ++LDGF L DG +Y+SE V+ LGL+Q+ +
Sbjct: 83 TELDMKFNSSYMKALDGFLMVLSEDGDMIYLSENVNKCLGLAQFDL 128
>gi|393908533|gb|EJD75096.1| CBR-HIF-1 protein [Loa loa]
Length = 762
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 108/259 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG S+ ++IH +D+ EE +TG+A
Sbjct: 115 LTQTDLTGRSLKEFIHTSDY-------------------------EEYVSCDTGSA---- 145
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--------------CHFKSSG-----YRS 112
+ +GC R + +RMKS ++ RG CH +S R
Sbjct: 146 ----------TDRGCGRVYTLRMKSVISPRGRNLNLKNAVFKPIICHIRSLSAENGRVRI 195
Query: 113 LDGFAFALGS------------------------DGRFLYISETVSIYLG---------- 138
+ A G D +F Y+SE+ + L
Sbjct: 196 IQASAQPAGQGNGVFAASRNAEVQNGTYLTRHTYDMKFSYVSESFNYILRHESRSLMGTS 255
Query: 139 --------------LSQWQVINKGQVLTHYYRLMNKNGGYTWVQS-CATVVCSSKNADEQ 183
+S +++ KG T YYRL+ N WVQ+ ATV ++K Q
Sbjct: 256 FYNLIHPADLDVVVVSIREMLTKGHTRTPYYRLIGLNKSVLWVQTEAATVNHTTKGQKGQ 315
Query: 184 NIICVNYVISGR-EYENFI 201
IIC++ +I + E ++FI
Sbjct: 316 YIICLHQLIGTQSERDSFI 334
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF + DG LY+SE+VSIYLGL+Q
Sbjct: 89 LDGFLAIVDLDGIILYVSESVSIYLGLTQ 117
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 24/98 (24%)
Query: 123 DGRFLYISETVSIYLGLSQWQVIN------------KGQVLTHY------------YRLM 158
DG LY S I LG ++IN V H+ YR+
Sbjct: 387 DGIILYASPACRILLGYEPEELINCTAAEFLHPRDLNALVKAHFFVLRQNVTYTITYRIR 446
Query: 159 NKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
+KNG Y W ++ ++ + +S+N D Q II V+ IS R+
Sbjct: 447 HKNGNYIWFETTSSAIRTSENEDSQEIIGVSRDISDRK 484
>gi|312082490|ref|XP_003143466.1| hypothetical protein LOAG_07886 [Loa loa]
Length = 695
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 93/259 (35%), Gaps = 108/259 (41%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG S+ ++IH +D+ EE +TG+A
Sbjct: 48 LTQTDLTGRSLKEFIHTSDY-------------------------EEYVSCDTGSA---- 78
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--------------CHFKSSG-----YRS 112
+ +GC R + +RMKS ++ RG CH +S R
Sbjct: 79 ----------TDRGCGRVYTLRMKSVISPRGRNLNLKNAVFKPIICHIRSLSAENGRVRI 128
Query: 113 LDGFAFALGS------------------------DGRFLYISETVSIYL--------GLS 140
+ A G D +F Y+SE+ + L G S
Sbjct: 129 IQASAQPAGQGNGVFAASRNAEVQNGTYLTRHTYDMKFSYVSESFNYILRHESRSLMGTS 188
Query: 141 QWQVI----------------NKGQVLTHYYRLMNKNGGYTWVQS-CATVVCSSKNADEQ 183
+ +I KG T YYRL+ N WVQ+ ATV ++K Q
Sbjct: 189 FYNLIHPADLDVVVVSIREMLTKGHTRTPYYRLIGLNKSVLWVQTEAATVNHTTKGQKGQ 248
Query: 184 NIICVNYVISGR-EYENFI 201
IIC++ +I + E ++FI
Sbjct: 249 YIICLHQLIGTQSERDSFI 267
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF + DG LY+SE+VSIYLGL+Q
Sbjct: 22 LDGFLAIVDLDGIILYVSESVSIYLGLTQ 50
>gi|405968902|gb|EKC33928.1| Hypoxia-inducible factor 1 alpha [Crassostrea gigas]
Length = 668
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 105 FKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
F S ++LDGF L ++G +YISE+VS YLG+ Q ++
Sbjct: 91 FDSLYSKALDGFVVILSNEGDLIYISESVSKYLGIQQVDLV 131
>gi|355563055|gb|EHH19617.1| Nuclear receptor coactivator 3 [Macaca mulatta]
Length = 1484
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 85 GCDRSFCIRMKSTLTKRGCHFKSS-----GYRS-----LDGFAFALGSDGRFLYISETVS 134
G D F + + S C F S GYRS LDGF F + DG +++SE V+
Sbjct: 141 GLDSPFLVTVFSHGLFSACTFLVSFSPLIGYRSYWIRALDGFLFVVNRDGNIVFVSENVT 200
Query: 135 IYLGLSQWQVIN 146
YL Q ++N
Sbjct: 201 QYLQYKQEDLVN 212
>gi|355784414|gb|EHH65265.1| Nuclear receptor coactivator 3 [Macaca fascicularis]
Length = 1469
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 85 GCDRSFCIRMKSTLTKRGCHFKSS-----GYRS-----LDGFAFALGSDGRFLYISETVS 134
G D F + + S C F S GYRS LDGF F + DG +++SE V+
Sbjct: 141 GLDSPFLVTVFSHGLFSACTFLVSFSPLIGYRSYWIRALDGFLFVVNRDGNIVFVSENVT 200
Query: 135 IYLGLSQWQVIN 146
YL Q ++N
Sbjct: 201 QYLQYKQEDLVN 212
>gi|78145949|gb|ABB22767.1| endothelial PAS domain protein 1, partial [Chanos chanos]
Length = 131
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 35/104 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L GL G S E
Sbjct: 43 LTQVELTGHSIFDFTHPCDHDEIRENLSL----KSGLGKKGRELSTE------------- 85
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
R F +RMK T+T RG + KS+ ++ L
Sbjct: 86 ----------------RDFFMRMKCTVTNRGRTVNLKSASWKVL 113
>gi|308496965|ref|XP_003110670.1| CRE-HLH-34 protein [Caenorhabditis remanei]
gi|308244011|gb|EFO87963.1| CRE-HLH-34 protein [Caenorhabditis remanei]
Length = 351
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF L G LYISET+SIYLGLSQ
Sbjct: 122 LDGFFVILDRRGDVLYISETISIYLGLSQ 150
>gi|122054003|gb|ABM66006.1| EPAS1 [Ateles geoffroyi]
Length = 77
Score = 41.6 bits (96), Expect = 0.45, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 33/100 (33%)
Query: 16 EMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLM 75
E+TG S+FD+ H DH E+ E L L + GSG G + DVS+
Sbjct: 1 ELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDVST-- 40
Query: 76 SLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
+R F +RMK T+T RG + KS+ ++ L
Sbjct: 41 -----------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 69
>gi|268554548|ref|XP_002635261.1| Hypothetical protein CBG11505 [Caenorhabditis briggsae]
Length = 332
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF L G LYISET+SIYLGLSQ
Sbjct: 103 LDGFFVILDRRGDVLYISETISIYLGLSQ 131
>gi|17226620|gb|AAL37875.1|AF443296_1 steroid receptor coactivator-1 [Coturnix japonica]
Length = 1508
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 117 ALDGFFFVVNREGRIVFVSENVTSYLGYNQEELMN 151
>gi|61097961|ref|NP_001012900.1| nuclear receptor coactivator 1 [Gallus gallus]
gi|60099121|emb|CAH65391.1| hypothetical protein RCJMB04_27h20 [Gallus gallus]
Length = 1510
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 117 ALDGFFFVVNREGRIVFVSENVTSYLGYNQEELMN 151
>gi|395507046|ref|XP_003757839.1| PREDICTED: nuclear receptor coactivator 1 [Sarcophilus harrisii]
Length = 1442
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNREGRIVFVSENVTSYLGYNQEELMN 153
>gi|426223216|ref|XP_004005773.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Ovis aries]
Length = 1440
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|410955730|ref|XP_003984504.1| PREDICTED: nuclear receptor coactivator 1 [Felis catus]
Length = 1382
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|440906090|gb|ELR56395.1| Nuclear receptor coactivator 1 [Bos grunniens mutus]
Length = 1441
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|432096834|gb|ELK27412.1| Nuclear receptor coactivator 1 [Myotis davidii]
Length = 1422
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 149 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 183
>gi|402890246|ref|XP_003908400.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor coactivator 1
[Papio anubis]
Length = 1386
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|354469281|ref|XP_003497058.1| PREDICTED: nuclear receptor coactivator 1 [Cricetulus griseus]
Length = 1402
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|345781963|ref|XP_532891.3| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Canis lupus
familiaris]
Length = 1440
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|426223214|ref|XP_004005772.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Ovis aries]
Length = 1399
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|164523392|gb|ABY60786.1| steroid receptor coactivator 1 isoform 2 [Sus scrofa]
Length = 1399
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|149727728|ref|XP_001503156.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Equus
caballus]
Length = 1442
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|329664314|ref|NP_001193144.1| nuclear receptor coactivator 1 [Bos taurus]
gi|296482347|tpg|DAA24462.1| TPA: nuclear receptor coactivator 1-like [Bos taurus]
Length = 1441
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|338713802|ref|XP_003362956.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Equus
caballus]
Length = 1400
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|164523390|gb|ABY60785.1| steroid receptor coactivator 1 isoform 1 [Sus scrofa]
Length = 1441
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|68534998|ref|NP_001020399.1| nuclear receptor coactivator 1 [Sus scrofa]
gi|75075065|sp|Q4PJW2.1|NCOA1_PIG RecName: Full=Nuclear receptor coactivator 1; Short=NCoA-1;
AltName: Full=Steroid receptor coactivator 1;
Short=SRC-1
gi|67866953|gb|AAY82453.1| nuclear receptor coactivator-1 [Sus scrofa]
Length = 1440
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|431911885|gb|ELK14029.1| Nuclear receptor coactivator 1 [Pteropus alecto]
Length = 1441
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|395828882|ref|XP_003787591.1| PREDICTED: nuclear receptor coactivator 1 [Otolemur garnettii]
Length = 1409
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|301756044|ref|XP_002913840.1| PREDICTED: nuclear receptor coactivator 1-like [Ailuropoda
melanoleuca]
gi|281344987|gb|EFB20571.1| hypothetical protein PANDA_001701 [Ailuropoda melanoleuca]
Length = 1441
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|444726506|gb|ELW67036.1| Nuclear receptor coactivator 1 [Tupaia chinensis]
Length = 1441
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|22538459|ref|NP_671766.1| nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
gi|1480646|gb|AAC50631.1| steroid receptor coactivator-1 F-SRC-1 [Homo sapiens]
Length = 1440
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|417406410|gb|JAA49865.1| Putative aryl-hydrocarbon receptor nuclear translocator [Desmodus
rotundus]
Length = 1398
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|22538455|ref|NP_003734.3| nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
gi|158518533|sp|Q15788.3|NCOA1_HUMAN RecName: Full=Nuclear receptor coactivator 1; Short=NCoA-1;
AltName: Full=Class E basic helix-loop-helix protein 74;
Short=bHLHe74; AltName: Full=Protein Hin-2; AltName:
Full=RIP160; AltName: Full=Renal carcinoma antigen
NY-REN-52; AltName: Full=Steroid receptor coactivator 1;
Short=SRC-1
gi|2924309|emb|CAA04371.1| steroid receptor coactivator [Homo sapiens]
gi|62702258|gb|AAX93184.1| unknown [Homo sapiens]
gi|84105530|gb|AAI11534.1| Nuclear receptor coactivator 1 [Homo sapiens]
gi|119621151|gb|EAX00746.1| nuclear receptor coactivator 1, isoform CRA_a [Homo sapiens]
gi|152112968|gb|ABS29266.1| nuclear receptor coactivator 1 [Homo sapiens]
Length = 1441
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|344239721|gb|EGV95824.1| Nuclear receptor coactivator 1 [Cricetulus griseus]
Length = 1444
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|426334900|ref|XP_004028974.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Gorilla
gorilla gorilla]
Length = 1399
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|383422425|gb|AFH34426.1| nuclear receptor coactivator 1 isoform 3 [Macaca mulatta]
Length = 1440
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|380817520|gb|AFE80634.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
gi|383422427|gb|AFH34427.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
gi|384950036|gb|AFI38623.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
Length = 1399
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|380817518|gb|AFE80633.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
gi|383422423|gb|AFH34425.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
gi|384950034|gb|AFI38622.1| nuclear receptor coactivator 1 isoform 1 [Macaca mulatta]
Length = 1441
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|355751157|gb|EHH55412.1| hypothetical protein EGM_04620 [Macaca fascicularis]
Length = 1442
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|355565510|gb|EHH21939.1| hypothetical protein EGK_05113 [Macaca mulatta]
Length = 1442
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|344280383|ref|XP_003411963.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Loxodonta
africana]
Length = 1441
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|332812919|ref|XP_003309007.1| PREDICTED: nuclear receptor coactivator 1 [Pan troglodytes]
Length = 1399
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|114576432|ref|XP_001145713.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Pan
troglodytes]
gi|397513551|ref|XP_003827075.1| PREDICTED: nuclear receptor coactivator 1 [Pan paniscus]
gi|410221242|gb|JAA07840.1| nuclear receptor coactivator 1 [Pan troglodytes]
gi|410300906|gb|JAA29053.1| nuclear receptor coactivator 1 [Pan troglodytes]
gi|410331487|gb|JAA34690.1| nuclear receptor coactivator 1 [Pan troglodytes]
Length = 1441
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|426334902|ref|XP_004028975.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 1441
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|1906028|gb|AAB50242.1| steroid receptor coactivator-1 [Homo sapiens]
Length = 1441
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|344280385|ref|XP_003411964.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Loxodonta
africana]
Length = 1399
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|334312419|ref|XP_003339744.1| PREDICTED: nuclear receptor coactivator 1 [Monodelphis domestica]
Length = 1326
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNREGRIVFVSENVTSYLGYNQEELMN 153
>gi|291387174|ref|XP_002710111.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Oryctolagus
cuniculus]
Length = 1440
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|441660082|ref|XP_004091402.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor coactivator 1
[Nomascus leucogenys]
Length = 1441
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|51593639|gb|AAH80866.1| Ncoa1 protein [Mus musculus]
Length = 1330
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|54036169|sp|P70365.2|NCOA1_MOUSE RecName: Full=Nuclear receptor coactivator 1; Short=NCoA-1;
AltName: Full=Nuclear receptor coactivator protein 1;
Short=mNRC-1; AltName: Full=Steroid receptor coactivator
1; Short=SRC-1
Length = 1447
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|403288208|ref|XP_003935304.1| PREDICTED: nuclear receptor coactivator 1 [Saimiri boliviensis
boliviensis]
Length = 1441
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|148669420|gb|EDL01367.1| nuclear receptor coactivator 1, isoform CRA_a [Mus musculus]
Length = 1436
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 124 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 158
>gi|22538457|ref|NP_671756.1| nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
gi|2924311|emb|CAA04372.1| steroid receptor coactivator 1e [Homo sapiens]
gi|84105441|gb|AAI11535.1| Nuclear receptor coactivator 1 [Homo sapiens]
gi|119621152|gb|EAX00747.1| nuclear receptor coactivator 1, isoform CRA_b [Homo sapiens]
Length = 1399
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|6754800|ref|NP_035011.1| nuclear receptor coactivator 1 [Mus musculus]
gi|1490876|gb|AAB38841.1| steroid receptor coactivator-1 [Mus musculus]
gi|45829689|gb|AAH68177.1| Nuclear receptor coactivator 1 [Mus musculus]
gi|148669421|gb|EDL01368.1| nuclear receptor coactivator 1, isoform CRA_b [Mus musculus]
Length = 1405
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|390474717|ref|XP_003734831.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Callithrix
jacchus]
Length = 1399
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|351713082|gb|EHB16001.1| Nuclear receptor coactivator 1 [Heterocephalus glaber]
Length = 1442
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|296224369|ref|XP_002758036.1| PREDICTED: nuclear receptor coactivator 1 isoform 1 [Callithrix
jacchus]
Length = 1441
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|291387176|ref|XP_002710112.1| PREDICTED: nuclear receptor coactivator 1 isoform 2 [Oryctolagus
cuniculus]
Length = 1398
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|158261061|dbj|BAF82708.1| unnamed protein product [Homo sapiens]
Length = 1399
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|119621153|gb|EAX00748.1| nuclear receptor coactivator 1, isoform CRA_c [Homo sapiens]
Length = 1369
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|1490872|gb|AAB06177.1| nuclear receptor co-activator [Mus musculus]
Length = 1447
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|1336160|gb|AAB01228.1| steroid receptor coactivator 1a [Mus musculus]
Length = 1405
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|355706624|gb|AES02699.1| nuclear receptor coactivator 1 [Mustela putorius furo]
Length = 1304
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 35 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 69
>gi|297265553|ref|XP_002799201.1| PREDICTED: nuclear receptor coactivator 1-like [Macaca mulatta]
Length = 1303
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|157819661|ref|NP_001101482.1| nuclear receptor coactivator 1 [Rattus norvegicus]
gi|149050859|gb|EDM03032.1| nuclear receptor coactivator 1 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 1417
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|149050860|gb|EDM03033.1| nuclear receptor coactivator 1 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 1401
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|395732073|ref|XP_003780548.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor coactivator 1,
partial [Pongo abelii]
Length = 1287
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>gi|402581177|gb|EJW75125.1| hypothetical protein WUBG_13968, partial [Wuchereria bancrofti]
Length = 100
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF L + G+ +Y+SET S++LGLSQ
Sbjct: 70 QTLDGFVLILDATGKMMYVSETASVHLGLSQ 100
>gi|312106054|ref|XP_003150634.1| hypothetical protein LOAG_15094 [Loa loa]
Length = 101
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF L + G+ +Y+SET S++LGLSQ
Sbjct: 70 QTLDGFVLILDATGKMMYVSETASVHLGLSQ 100
>gi|291228817|ref|XP_002734373.1| PREDICTED: spineless-like [Saccoglossus kowalevskii]
Length = 798
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
++LDGF F L SDG LY SE ++ +LG +Q ++++
Sbjct: 155 QALDGFLFILTSDGTILYTSENIATHLGFNQVDLVHR 191
>gi|170594892|ref|XP_001902166.1| hypoxia-induced factor 1 [Brugia malayi]
gi|158590308|gb|EDP28986.1| hypoxia-induced factor 1, putative [Brugia malayi]
Length = 116
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 94 MKSTLTK--RGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
+K+ LT+ R +++ LDGF + DG LY+SE+VSIYLGL+Q
Sbjct: 67 LKTNLTEEHRCLWSETTLLECLDGFLAIVDLDGIILYVSESVSIYLGLTQ 116
>gi|444519553|gb|ELV12868.1| Aryl hydrocarbon receptor [Tupaia chinensis]
Length = 657
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q ++ SV++ IH D E QL H +P ++ G G++ P S
Sbjct: 149 QSDVIHQSVYELIHTEDRAEFQRQL-------HWALNPPQC-TDSGQGIDATPLQP--PS 198
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTL--TKRGCHFKSS---GYRSLDGFAFALGSDGRFLY 128
++ + + ++F R K L T C K GY + GS +FL+
Sbjct: 199 ILEIRT--------KNFIFRTKHKLDFTPTACDAKGKIVLGYTEAE--LCTSGSGYQFLH 248
Query: 129 ISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICV 188
++ +Y S ++I G+ +RL+ K +TWVQS A +V KN II
Sbjct: 249 AADM--LYCAESHIRMIKTGESGMIVFRLLTKGNRWTWVQSNARLVY--KNGRPDYIIAT 304
Query: 189 NYVISGRE 196
++ E
Sbjct: 305 QRPLTEEE 312
>gi|327282477|ref|XP_003225969.1| PREDICTED: nuclear receptor coactivator 1-like isoform 1 [Anolis
carolinensis]
Length = 1506
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 118 ALDGFFFVVNREGRIVFVSENVTSYLGYNQDELMN 152
>gi|124013692|gb|ABM88117.1| HIF1A [Macaca nemestrina]
Length = 140
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 82 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 115
>gi|71993291|ref|NP_001023892.1| Protein HIF-1, isoform c [Caenorhabditis elegans]
gi|24817585|emb|CAD54167.1| Protein HIF-1, isoform c [Caenorhabditis elegans]
Length = 503
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE-QNIICVNYVISGREYE 198
S ++ KG + T YYRL+ N W+Q+ AT + + + Q +ICV+YV+ + E
Sbjct: 68 SMKELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKGQYVICVHYVLGIQGAE 127
Query: 199 NFIMDCCQLEDYIQQRGVKRE 219
++ C Q +K+E
Sbjct: 128 ESLVVCTDSMPAGMQVDIKKE 148
>gi|47207806|emb|CAF89986.1| unnamed protein product [Tetraodon nigroviridis]
Length = 441
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 15 VEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTAN------ 68
+E+TG S+FD+IH D T++ EQL H L S + S AN
Sbjct: 114 LELTGQSLFDFIHPKDITKVKEQLASSELHNHRLIDAASESGPRASRSRQTAANLTCLCA 173
Query: 69 --PDVSSLMSLSSSSSYKGCDRSFCIRMK 95
V + + +S G R+F RMK
Sbjct: 174 AGVPVQAEAPVRASVLTTGARRAFFCRMK 202
>gi|327282479|ref|XP_003225970.1| PREDICTED: nuclear receptor coactivator 1-like isoform 2 [Anolis
carolinensis]
Length = 1445
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 118 ALDGFFFVVNREGRIVFVSENVTSYLGYNQDELMN 152
>gi|312087762|ref|XP_003145599.1| hypothetical protein LOAG_10024 [Loa loa]
Length = 274
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 86/245 (35%), Gaps = 84/245 (34%)
Query: 15 VEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSL 74
VE+ GSS+FD++H+ D EL L S + + N S+
Sbjct: 1 VELIGSSIFDFLHRDDEPELRYIL---------------------SSTDFNSINQITSNN 39
Query: 75 MSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL----------DG--------- 115
+ ++ S +R F IR+K L KR +GY+++ DG
Sbjct: 40 TNNNNQSFNDEIERMFFIRLKCVLPKRNAGIIYNGYKTISCWGYSKICRDGERITNMGLL 99
Query: 116 --------------------FAFALGSDGRFLYISETVSIYLGL--------SQWQVI-- 145
F F D +++ V+ G S +Q++
Sbjct: 100 AVGYMLTRSGITELKLSSSTFMFRARLDLNIIFVDSRVTALTGFGASSLLDTSLYQMVLL 159
Query: 146 --------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191
+K Q T YYRL+++ GY W QS +V + I+ V +
Sbjct: 160 EDVHTIEKAHKILLHKNQSTTGYYRLLHRIRGYVWAQSQFCIVPMLRATVTHCIVAVTEI 219
Query: 192 ISGRE 196
+S RE
Sbjct: 220 LSKRE 224
>gi|432952284|ref|XP_004085039.1| PREDICTED: nuclear receptor coactivator 1-like, partial [Oryzias
latipes]
Length = 488
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG SQ +++
Sbjct: 120 ALDGFFFVVNREGRIIFVSENVTSYLGYSQEELMT 154
>gi|12857320|dbj|BAB30975.1| unnamed protein product [Mus musculus]
Length = 258
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>gi|7331119|gb|AAF60282.1| hypoxia-inducible factor 1 alpha [Ovis aries]
Length = 103
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 54 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 87
>gi|313229375|emb|CBY23962.1| unnamed protein product [Oikopleura dioica]
Length = 778
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 143 QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
Q + K Q T YYR + +N G+ W C + + + + + I+ +N VIS R
Sbjct: 244 QFLQKSQGATRYYRWLQRNNGFVW---CKSTLLLVQKKERELILWINQVISDR 293
>gi|315259619|gb|ADT92124.1| hypoxia-inducible factor 1 alpha [Capra hircus]
Length = 103
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 51 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 84
>gi|312385360|gb|EFR29882.1| hypothetical protein AND_00865 [Anopheles darlingi]
Length = 274
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 95 KSTLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
K L G + ++LDGF L DG Y+SE VS YLG++Q ++ GQ + Y
Sbjct: 97 KLDLKALGLEPEMVPLQALDGFLLVLSVDGDVTYVSENVSDYLGIAQIDIM--GQPIWEY 154
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 27/104 (25%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I Q+++ G +++Y HQ DH EL E L + H SP S + G AN +
Sbjct: 141 IAQIDIMGQPIWEYSHQCDHDELREALN---GRHH---SP--------SELLNGVANSEC 186
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
L +R F +R+K TLT RG + +S+ Y+ L
Sbjct: 187 RPLE-----------NRDFFLRLKCTLTSRGRSVNIRSASYKVL 219
>gi|313223816|emb|CBY42102.1| unnamed protein product [Oikopleura dioica]
Length = 626
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 143 QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
Q + K Q T YYR + +N G+ W C + + + + + I+ +N VIS R
Sbjct: 92 QFLQKSQGATRYYRWLQRNNGFVW---CKSTLLLVQKKERELILWINQVISDR 141
>gi|350579150|ref|XP_003121901.3| PREDICTED: hypoxia-inducible factor 1-alpha-like [Sus scrofa]
Length = 283
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>gi|341877110|gb|EGT33045.1| CBN-HIF-1 protein [Caenorhabditis brenneri]
Length = 732
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE-QNIICVNYVISGREYENFI 201
++ KG + T YYRL+ N W+Q+ AT + + + Q +ICV+YV+ + E +
Sbjct: 287 ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKGQYVICVHYVLGIQGAEESL 346
Query: 202 MDCCQLEDYIQQRGVKRE 219
+ C Q +K+E
Sbjct: 347 VVCTDAMPAGMQVDIKKE 364
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQ 141
LDGF + SD LY++E+V++YLGL+Q
Sbjct: 94 LDGFVMIVDSDSSILYVTESVALYLGLTQ 122
>gi|196016918|ref|XP_002118308.1| hypothetical protein TRIADDRAFT_62354 [Trichoplax adhaerens]
gi|190579084|gb|EDV19188.1| hypothetical protein TRIADDRAFT_62354 [Trichoplax adhaerens]
Length = 340
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
Query: 104 HFKSS-GY---RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
+FKS+ G+ ++LDGF + +D + LY+SE +S++LGLSQ +I
Sbjct: 88 YFKSNIGWYLLQALDGFLLLISNDCQLLYVSERISVHLGLSQVDLI 133
>gi|344247445|gb|EGW03549.1| Hypoxia-inducible factor 3 alpha [Cricetulus griseus]
Length = 272
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174
+++KGQ +T YR + + GGY W Q+ ATVV
Sbjct: 229 LLSKGQAVTGQYRFLARTGGYLWTQTQATVV 259
>gi|156394393|ref|XP_001636810.1| predicted protein [Nematostella vectensis]
gi|156223917|gb|EDO44747.1| predicted protein [Nematostella vectensis]
Length = 240
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 87 DRSFCIRMKSTLTKRGCHFKSSGY--RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
D+ +R+ ++ + FK + +LDGF L D Y SET+ YLGLSQ V
Sbjct: 25 DKLSILRLSASYLRAKNFFKVLMHPLLALDGFVIVLTQDFELFYASETIQTYLGLSQASV 84
Query: 145 INK 147
I++
Sbjct: 85 IHQ 87
>gi|6118506|gb|AAF04124.1|AF193574_1 HIF1-alpha protein [Cavia porcellus]
Length = 108
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 65 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 98
>gi|156361155|ref|XP_001625385.1| predicted protein [Nematostella vectensis]
gi|156212216|gb|EDO33285.1| predicted protein [Nematostella vectensis]
Length = 143
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 102 GCHFKSSGY--RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
GC+ + + ++LDGF + DG+ Y+SE V +LG SQ VI++
Sbjct: 76 GCYLRPFTFFVQALDGFIVVITQDGQLFYVSENVRDFLGYSQAAVIHQ 123
>gi|325989311|gb|ADZ48669.1| hypoxia-inducible factor 1 alpha [Paralichthys olivaceus]
Length = 278
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 99 TKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
T+ SS ++LDGF L DG +Y+SE V+ LGL+Q+ +
Sbjct: 46 TELDIQLNSSYLKALDGFLIVLSEDGDIIYLSENVNKCLGLAQFDL 91
>gi|449273277|gb|EMC82821.1| Aryl hydrocarbon receptor, partial [Columba livia]
Length = 733
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 121 GSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNA 180
GS +FL++ + +Y S +++ G+ +RL+ K G + WVQS A +V
Sbjct: 284 GSGYQFLHVGDL--MYCAESHVRMMKTGETGVMSFRLLTKKGNWVWVQSNAWLVYKGGKP 341
Query: 181 DEQNIICVNYVISGREYENFI 201
D II N V+S E E +
Sbjct: 342 D--CIIAQNRVLSNEEGEEHL 360
>gi|15147217|gb|AAK12621.1| brain-muscle-ARNT-like protein 2c [Rattus norvegicus]
Length = 534
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
IL+ + G ++FD++H D ++ EQL +S E+ G T +P V
Sbjct: 120 ILKASLMGQNLFDFLHPKDVAKVKEQLSCDVSL-----------REKPIGTKT---SPQV 165
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLT 99
S + S + G RSF RMKS+ T
Sbjct: 166 HSHSHIGRSRVHSGSRRSFFFRMKSSCT 193
>gi|339283906|gb|AEJ38222.1| clock [Spodoptera exigua]
Length = 411
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
++ KG++ + YYR + K + W+Q+ + N+ + ++C V+S + +
Sbjct: 296 LMQKGELTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTRRVVSYADIAKSMKQ 355
Query: 204 CCQLEDYIQQ----RGVKREEPSNNDPENDSPDADREDGRNSGDS 244
D + + RGV +E PS++ + SP E G+S
Sbjct: 356 EGAEADTVSEAEVNRGVMKEAPSDDAMVSMSPSYMSEASDAFGNS 400
>gi|156402728|ref|XP_001639742.1| predicted protein [Nematostella vectensis]
gi|156226872|gb|EDO47679.1| predicted protein [Nematostella vectensis]
Length = 671
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
++ KG+V T YYR + K Y W++SC + + N+ + II + S E
Sbjct: 308 LVYKGRVNTCYYRFLTKGQAYLWIRSCCYISYNQWNSRPEFIIATSTTASQAE 360
>gi|61652852|gb|AAX48002.1| hypoxia-inducible factor 1alpha [Pusa hispida]
Length = 97
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 47 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 80
>gi|429506456|ref|YP_007187640.1| hypothetical protein B938_14800 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429488046|gb|AFZ91970.1| hypothetical protein B938_14800 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 1041
Score = 38.1 bits (87), Expect = 4.9, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 219 EEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPD---IEDGTSEG----DNSGDQRGR 271
+EP +P + P +DG NSGD+ ++ +P + EDGT E DN+GDQ +
Sbjct: 424 KEPEKENPAPEKP-GQGDDGENSGDTDPNNGTNPGEDGKTEDGTKEEQPASDNTGDQEPK 482
Query: 272 NHLDHVTQLHNISTPPEQSA 291
+ T N++ P ++ A
Sbjct: 483 T-VQTATAAKNVTPPADEPA 501
>gi|345310655|ref|XP_003428999.1| PREDICTED: nuclear receptor coactivator 1-like, partial
[Ornithorhynchus anatinus]
Length = 1010
Score = 38.1 bits (87), Expect = 5.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
++LDGF F + +GR +++SE V+ YLG Q +++N
Sbjct: 4 QALDGFFFVVNREGRIVFVSENVTGYLGYKQEELMN 39
>gi|120974842|gb|ABM46741.1| HIF1A [Gorilla gorilla]
gi|124054286|gb|ABM89353.1| HIF1A [Pongo pygmaeus]
Length = 76
Score = 37.7 bits (86), Expect = 5.5, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 18 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 51
>gi|365877753|ref|ZP_09417248.1| LuxR family transcriptional regulator [Elizabethkingia anophelis
Ag1]
gi|442589478|ref|ZP_21008286.1| LuxR family transcriptional regulator [Elizabethkingia anophelis
R26]
gi|365754466|gb|EHM96410.1| LuxR family transcriptional regulator [Elizabethkingia anophelis
Ag1]
gi|442561088|gb|ELR78315.1| LuxR family transcriptional regulator [Elizabethkingia anophelis
R26]
Length = 265
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 114 DGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQ-VLTHYYRLMNKNGGYTWVQSCAT 172
D FA L D R +S + IY + + INK V Y R +NK Y WV
Sbjct: 82 DFFADQLHPDDRDYVLSAFIFIYKTYADIKTINKDNFVFNIYTRFLNKKNEYRWVVMQIA 141
Query: 173 VVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
+ ++ ++I+C+ Y +S + +N M L D
Sbjct: 142 KIYMNEFKQVESILCIVYDLSHLQIKN--MPLLSLVD 176
>gi|383865803|ref|XP_003708362.1| PREDICTED: uncharacterized protein LOC100878984 [Megachile
rotundata]
Length = 724
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS--------GR 195
++ KG+ + YYR + K + W+Q+ + + N+ + I+C +YV+S +
Sbjct: 315 LMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYNQWNSKPEFIVCTHYVVSYIDVIKELRK 374
Query: 196 EYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDS--PDADREDGRNSGDSRNHDHL 250
E ENF + Q D + VK+++ + + P + + P + R S ++R+ H+
Sbjct: 375 ESENFNKEHSQ--DVL--IPVKQQQVTTSCPVSPTQWPKSSRTPKSVSSNTRSRHHV 427
>gi|164600783|gb|ABY61822.1| endothelial PAS domain protein 1 [Ovis aries]
Length = 142
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKN 179
S + KGQV++ YR++ K+GGY W+++ TV+ + +N
Sbjct: 100 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRN 139
>gi|374619438|ref|ZP_09691972.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [gamma
proteobacterium HIMB55]
gi|374302665|gb|EHQ56849.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [gamma
proteobacterium HIMB55]
Length = 654
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 116 FAFALGSDGRFLYISETV---SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCAT 172
FA AL DGR+L ++ETV S YL L V R + +GG+ W T
Sbjct: 200 FARALSPDGRYLVVTETVGEDSDYLYLLDTDTREMKVVSQPESRANHGDGGFAWSSDGGT 259
Query: 173 VVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209
+ SS NA+ + V Y I +++ + L D
Sbjct: 260 LFLSS-NANREFAAVVAYDIGSARFDSLVESEFDLAD 295
>gi|27525075|emb|CAD44626.1| single-minded protein [Branchiostoma floridae]
Length = 202
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQL 38
QVE+TG+S+++YIH ADH E+A L
Sbjct: 14 QVELTGNSIYEYIHPADHEEMAAIL 38
>gi|432936018|ref|XP_004082080.1| PREDICTED: aryl hydrocarbon receptor-like, partial [Oryzias
latipes]
Length = 632
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+SLDGF + SDG Y+S T+ YLG +Q V+++
Sbjct: 166 QSLDGFVMVVTSDGLVFYVSPTIKDYLGFNQSDVVHQ 202
>gi|21483612|gb|AAM52781.1| SD25933p [Drosophila melanogaster]
Length = 403
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 27/104 (25%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSL----KRELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
R +R+K TLT RG + KS+ Y+ +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVI 283
>gi|385266066|ref|ZP_10044153.1| YueB [Bacillus sp. 5B6]
gi|385150562|gb|EIF14499.1| YueB [Bacillus sp. 5B6]
Length = 1038
Score = 37.0 bits (84), Expect = 9.3, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 215 GVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPD---IEDGTSEG----DNSGD 267
G+K E N PEN +DG NSGD+ ++ +P + EDGT E DN+ D
Sbjct: 422 GLKEPEKENPAPENP---GQGDDGENSGDTDPNNGTNPEEDGKTEDGTKEEQPASDNTSD 478
Query: 268 QRGRNHLDHVTQLHNISTPPEQSA 291
Q + + T N++ P ++ A
Sbjct: 479 QEPKT-VQTATAAKNVTPPADEPA 501
>gi|440682437|ref|YP_007157232.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428679556|gb|AFZ58322.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1445
Score = 37.0 bits (84), Expect = 9.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 139 LSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKN 179
++ W++ G++LT YR+ +KNG + W++S V +N
Sbjct: 643 IAHWKIARDGEILTTEYRMRHKNGSWCWLRSRDVVFARDEN 683
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,068,797,353
Number of Sequences: 23463169
Number of extensions: 224840817
Number of successful extensions: 611264
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 607050
Number of HSP's gapped (non-prelim): 3844
length of query: 294
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 153
effective length of database: 9,050,888,538
effective search space: 1384785946314
effective search space used: 1384785946314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)