BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17809
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IXF0|NPAS3_HUMAN Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3
PE=2 SV=1
Length = 933
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 139/308 (45%), Gaps = 103/308 (33%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 143 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 202
Query: 31 HTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTA---NPDVSSLMSLSSSSSYKGCD 87
H E+AEQLG+ L G GL S G+A E+G+ + ++ P+ S S ++ +
Sbjct: 203 HVEMAEQLGMKLPPGRGLLSQGTA--EDGASSASSSSQSETPEPVESTSPSLLTTDNTLE 260
Query: 88 RSFCIRMKSTLTKRGCHFKSSGYRSL---------------------------------- 113
RSF IRMKSTLTKRG H KSSGY+ +
Sbjct: 261 RSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP 320
Query: 114 ----------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI------------------ 145
F + D +Y +S Y+ L+ ++
Sbjct: 321 PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 380
Query: 146 ------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 381 SHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKD 440
Query: 200 FIMDCCQL 207
MD QL
Sbjct: 441 TPMDIAQL 448
>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain-containing protein 3 OS=Mus musculus GN=Npas3
PE=2 SV=1
Length = 925
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 137/306 (44%), Gaps = 99/306 (32%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
+E+FE H G+HILQ VE+TGSSVFDY+H D
Sbjct: 148 IEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGD 207
Query: 31 HTELAEQLGLGLSQGHGLASPGSA-NSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRS 89
H E+AEQLG+ L G GL S G+ ++ + ++ + P+ S S ++ +RS
Sbjct: 208 HVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS 267
Query: 90 FCIRMKSTLTKRGCHFKSSGYRSL------------------------------------ 113
F IRMKSTLTKRG H KSSGY+ +
Sbjct: 268 FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVPLSHGRTVPSQIMGLVVVAHALPPPT 327
Query: 114 --------DGFAFALGSDGRFLYISETVSIYLGLSQWQVI-------------------- 145
F + D +Y +S Y+ L+ ++
Sbjct: 328 INEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH 387
Query: 146 ----NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFI 201
NKGQ +T YYR M KNGGY W+QS AT+ ++KNA+E+NII VNY++S EY++
Sbjct: 388 LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTP 447
Query: 202 MDCCQL 207
MD QL
Sbjct: 448 MDIAQL 453
>sp|Q24119|TRH_DROME Protein trachealess OS=Drosophila melanogaster GN=trh PE=1 SV=4
Length = 1022
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 86/129 (66%), Gaps = 10/129 (7%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+I KGQVLT YYRLMNK+GGYTW+Q+CATVVCS+KNADEQNIICVNYVIS RE EN I+D
Sbjct: 457 LIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMILD 516
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
CCQLE +K EE ND + SP D NS HLS D++ + + D
Sbjct: 517 CCQLEP--SPDSIKHEEGLGNDKSSGSPGGDASGEGNS-------HLSAGDMKLNSPKTD 567
Query: 264 NSG-DQRGR 271
+ G RGR
Sbjct: 568 SEGHSHRGR 576
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 100/163 (61%), Gaps = 49/163 (30%)
Query: 1 MELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQAD 30
++LFEQHQGTHILQ VEMTGSS+FDYIHQAD
Sbjct: 170 VDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQAD 229
Query: 31 HTELAEQLGLGLSQGHG------------------LASPGSANSEEGSGMNTGTANPDVS 72
H+E+A+QLGL L+ G G +ASP S S++GSG + GT NPDV+
Sbjct: 230 HSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTH-GTNNPDVA 288
Query: 73 SLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDG 115
+ M+ +S+S YKG DRSFC+RMKSTLTKRGCHFKSSGYR+ D
Sbjct: 289 ASMTQASTSGYKGYDRSFCVRMKSTLTKRGCHFKSSGYRASDA 331
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
+SLDGFA A+ +DGRFLYISETVSIYLGLSQ ++
Sbjct: 183 QSLDGFALAVAADGRFLYISETVSIYLGLSQVEM 216
>sp|P97459|NPAS1_MOUSE Neuronal PAS domain-containing protein 1 OS=Mus musculus GN=Npas1
PE=1 SV=1
Length = 594
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 135/308 (43%), Gaps = 93/308 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VE+TGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91
+E+ EQLGL + G +P S +S S ++ P++ + +S +++ +RSF
Sbjct: 192 SEVLEQLGL-RAASIGPPTPPSVSSSSSSSSSSLVDTPEIEA-SPTEASPAFRAQERSFF 249
Query: 92 IRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL-------- 137
+RMKSTLTKRG + K+SGY+ L A L + G L + + L
Sbjct: 250 VRMKSTLTKRGLNVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELPLHGHMIVFR 309
Query: 138 --------------------------GLSQWQVIN----------------KGQVLTHYY 155
G S +Q ++ KGQV+T YY
Sbjct: 310 LSLGLTILACESRVSDHMDMGPSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVVTGYY 369
Query: 156 RLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRG 215
R + + GG+ W+QS ATV + K+ E +++ V++V+S E +D QL + Q
Sbjct: 370 RWLQRAGGFVWLQSVATVAGNGKSTGEHHVLWVSHVLSNAEGSQTPLDAFQLPAIVSQ-- 427
Query: 216 VKREEPSN 223
EEPS
Sbjct: 428 ---EEPSR 432
>sp|Q99742|NPAS1_HUMAN Neuronal PAS domain-containing protein 1 OS=Homo sapiens GN=NPAS1
PE=2 SV=2
Length = 590
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 91/297 (30%)
Query: 2 ELFEQHQGTHILQ------------------------------VEMTGSSVFDYIHQADH 31
E+FEQH G HILQ VEMTGSSVFDYIH DH
Sbjct: 132 EVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDH 191
Query: 32 TELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV-SSLMSLSSSSSYKGCDRSF 90
+E+ EQLGL P ++S S T P++ +SL + SS + +RSF
Sbjct: 192 SEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADT--PEIEASLTKVPPSSLVQ--ERSF 247
Query: 91 CIRMKSTLTKRGCHFKSSGYR------SLDGFAFALGSDGRFLYISETVSIYL------- 137
+RMKSTLTKRG H K+SGY+ L A L + G L + + L
Sbjct: 248 FVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVF 307
Query: 138 ---------------------------GLSQWQVI----------------NKGQVLTHY 154
G S +Q + +KGQV+T Y
Sbjct: 308 RLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGY 367
Query: 155 YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
YR + + GG+ W+QS ATV S K+ E +++ V++V+S E +D QL +
Sbjct: 368 YRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASV 424
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 109/286 (38%), Gaps = 100/286 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL-------GLSQGH-GLASPGSANSEEGSGMNTG 65
QVE+TG+S+F+YIH D E+ L L L+Q H + SP + G
Sbjct: 139 QVELTGNSIFEYIHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRG 198
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------ 113
+ ++ +++F +RMK L KR +SG++ +
Sbjct: 199 SHTIEI---------------EKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYP 243
Query: 114 ---DG-------------------------------FAFALGSDGRFLYISETVSIYLGL 139
DG F F D + ++ VS G
Sbjct: 244 DRGDGQGSLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGY 303
Query: 140 SQWQVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVC 175
+I K GQV T YYR + K GG+ WVQS AT+V
Sbjct: 304 EPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVH 363
Query: 176 SSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEP 221
+S+++ E I+ VNYV+S RE ++ +++ Q GV + EP
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEI-------QTGVVKREP 402
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 96 STLTKRGCHFKSSG---YRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S +RG K G ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 142
>sp|Q98SW2|HIF1A_ONCMY Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss GN=hif1a
PE=2 SV=1
Length = 766
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 101/271 (37%), Gaps = 106/271 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q+++TG SVF+Y H DH EL E L TGT
Sbjct: 124 LAQIDLTGLSVFEYTHPCDHEELREML----------------------VHRTGT----- 156
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL---------------- 113
S S +RSF +RMK TLT RG + KS+ ++ L
Sbjct: 157 ------SKKSKEPNTERSFFLRMKCTLTNRGRTVNVKSATWKVLHCSDHVRVHESPAEQI 210
Query: 114 -------------------------------DGFAFALGSDGRFLYISETVSIYLGLSQW 142
F D +F Y E ++ +G
Sbjct: 211 PGGHKEPSVPYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKFTYCDERITELMGYDPE 270
Query: 143 QVINK------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
++N+ GQV T YR++ K GG+ WV++ ATV+ ++K
Sbjct: 271 DLLNRSVYEYYHALDSDHLMKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNK 330
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLED 209
N+ Q ++CVNYV+SG E E ++ Q ED
Sbjct: 331 NSQPQCVVCVNYVLSGIEEEKMMLSLEQTED 361
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 108 SGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
S ++++GF L DG +Y+SE V+ LGL+Q
Sbjct: 93 SYLKAIEGFLMVLSEDGDMIYLSENVNKCLGLAQ 126
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 101/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +GL ++G NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLV-------KKGKEQNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQS 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY W+++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKKGGYVWIETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1 SV=3
Length = 836
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 102/274 (37%), Gaps = 106/274 (38%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L + +G +G +NT
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGPV-------RKGKELNT------- 163
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 164 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLEDYIQ 212
N+ Q I+CVNYV+SG + I Q E ++
Sbjct: 329 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTESVLK 362
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMVYISDNVNKYMGLTQFEL 127
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=Sim2 PE=1 SV=1
Length = 657
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 99/264 (37%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH +DH E+ L TA+P +
Sbjct: 116 QVELTGNSIYEYIHPSDHDEMTAVL---------------------------TAHPPLHH 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
+ Y+ +RSF +RMK L KR SGY+ +
Sbjct: 149 HL----LQEYE-IERSFFLRMKCVLAKRNAGLTCSGYKVIHCSGYLKIRQYMLDMSLYDS 203
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+ F F D + +++ V+ G +I K
Sbjct: 204 CYQIVGLVAVGQSLPPSAITEIKLHSNMFMFRASLDLKLIFLDSRVTELTGYEPQDLIEK 263
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T YYRL++K GG+ WVQS ATVV +S+++
Sbjct: 264 TLYHHVHGCDTFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTDVEYKELQLSLDQV 347
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1
Length = 826
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 74/254 (29%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L + +GL G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREML----THRNGLVKKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTA--------------------------NPDVSSLMSLSSSSSYKGCDRSFC 91
G MN +A P ++ L+ + + +
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPS-NIEIP 236
Query: 92 IRMKSTLTKRGCHFKSS----------GY-------RSLDGFAFALGSDGRFLYISETVS 134
+ K+ L++ K S GY RS+ + AL SD
Sbjct: 237 LDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSD----------- 285
Query: 135 IYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194
+L + + KGQV T YR++ K GGY WV++ ATV+ ++KN+ Q I+CVNYV+SG
Sbjct: 286 -HLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSG 344
Query: 195 REYENFIMDCCQLE 208
+ I Q E
Sbjct: 345 IIQHDLIFSLQQTE 358
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1-alpha OS=Gallus gallus GN=HIF1A PE=2
SV=2
Length = 811
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 99/270 (36%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q ++TG SVFD+ H DH EL E L + +G G + E
Sbjct: 122 LTQFDLTGHSVFDFTHPCDHEELREML----THRNGPVKKGKEQNTE------------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ----------------RSFFLRMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYDTCNNQT 208
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 209 HCGYKKPPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 268
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 269 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTK 328
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG ++ I Q E
Sbjct: 329 NSQPQCIVCVNYVLSGIVQKDLIFSLGQTE 358
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +Y+SE V+ +GL+Q+ +
Sbjct: 94 KALDGFVMVLSEDGDMIYMSENVNKCMGLTQFDL 127
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=SIM2 PE=1 SV=2
Length = 667
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 95/264 (35%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH +DH E+ L H L
Sbjct: 116 QVELTGNSIYEYIHPSDHDEMTAVLTAHQPLHHHLL------------------------ 151
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL-------------------- 113
Y+ +RSF +RMK L KR SGY+ +
Sbjct: 152 -------QEYE-IERSFFLRMKCVLAKRNAGLTCSGYKVIHCSGYLKIRQYMLDMSLYDS 203
Query: 114 --------------------------DGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+ F F D + +++ V+ G +I K
Sbjct: 204 CYQIVGLVAVGQSLPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEK 263
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T YYRL++K GG+ WVQS ATVV +S+++
Sbjct: 264 TLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTEIEYKELQLSLEQV 347
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF F + SDG+ +YISET S++LGLSQ ++
Sbjct: 86 QTLDGFVFVVASDGKIMYISETASVHLGLSQVEL 119
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A PE=2
SV=1
Length = 819
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 100/270 (37%), Gaps = 106/270 (39%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ Q E+TG SVFD+ H DH E+ E L+ +G ++G NT
Sbjct: 123 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPI-------KKGKEQNT------- 164
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTK--RGCHFKSS--------------------- 108
RSF +RMK TLT R + KS+
Sbjct: 165 ---------------QRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQP 209
Query: 109 --GYRS----------------------LDGFAFAL--GSDGRFLYISETVSIYLGLSQW 142
GY+ LD F D +F Y E ++ +G
Sbjct: 210 QCGYKKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPE 269
Query: 143 QVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178
+++ KGQV T YR++ K GGY WV++ ATV+ ++K
Sbjct: 270 ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTK 329
Query: 179 NADEQNIICVNYVISGREYENFIMDCCQLE 208
N+ Q I+CVNYV+SG + I Q E
Sbjct: 330 NSQPQCIVCVNYVVSGIIQHDLIFSLQQTE 359
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++LDGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 95 KALDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 128
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a PE=2
SV=1
Length = 825
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 48/245 (19%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEE------------- 58
+ Q E+TG SVFD+ H DH E+ E L+ +G G + +
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEEMREM----LTHRNGPVRKGKEQNTQRSFFLRMKCTLTS 177
Query: 59 -GSGMNTGTANPDV----SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL 113
G MN +A V + +SS+ C L S+ L
Sbjct: 178 RGRTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPL 237
Query: 114 DGFAFAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NK 147
D F D +F Y E ++ +G +++ K
Sbjct: 238 DSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK 297
Query: 148 GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQL 207
GQV T YR++ K GGY WV++ ATV+ ++K++ Q I+CVNYV+SG + I Q
Sbjct: 298 GQVTTGQYRMLAKRGGYVWVETQATVIYNTKDSQPQCIVCVNYVVSGIIQHDLIFSLQQT 357
Query: 208 EDYIQ 212
E ++
Sbjct: 358 ESVLK 362
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++ DGF L DG +YIS+ V+ Y+GL+Q+++
Sbjct: 94 KAPDGFVMVLTDDGDMIYISDNVNKYMGLTQFEL 127
>sp|P81133|SIM1_HUMAN Single-minded homolog 1 OS=Homo sapiens GN=SIM1 PE=2 SV=2
Length = 766
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 96/264 (36%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L TA+ S
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVL---------------------------TAHQPYHS 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------DG 115
Y+ +RSF +RMK L KR GY+ + DG
Sbjct: 149 HF----VQEYE-IERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG 203
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVIN- 146
F F D + +++ V+ G +I
Sbjct: 204 CYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEK 263
Query: 147 -----------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
KGQV T YYR + K+GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTDTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 96/264 (36%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L TA+ S
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVL---------------------------TAHQPYHS 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------DG 115
Y+ +RSF +RMK L KR GY+ + DG
Sbjct: 149 HF----VQEYE-IERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG 203
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVIN- 146
F F D + +++ V+ G +I
Sbjct: 204 CYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEK 263
Query: 147 -----------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
KGQV T YYR + K+GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTDTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>sp|A1YFY6|SIM1_PANPA Single-minded homolog 1 OS=Pan paniscus GN=SIM1 PE=3 SV=1
Length = 766
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 96/264 (36%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L TA+ S
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVL---------------------------TAHQPYHS 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSL------------------DG 115
Y+ +RSF +RMK L KR GY+ + DG
Sbjct: 149 HF----VQEYE-IERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG 203
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
F F D + +++ V+ G +I K
Sbjct: 204 CYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEK 263
Query: 148 ------------------------GQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
GQV T YYR + K+GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTDTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 94/264 (35%), Gaps = 102/264 (38%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
QVE+TG+S+++YIH ADH E+ L TA+ S
Sbjct: 116 QVELTGNSIYEYIHPADHDEMTAVL---------------------------TAHQPYHS 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYR------------------SLDG 115
Y+ +RSF +RMK L KR GY+ DG
Sbjct: 149 HF----VQEYE-IERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDG 203
Query: 116 ----------------------------FAFALGSDGRFLYISETVSIYLGLSQWQVIN- 146
F F D + +++ V+ G +I
Sbjct: 204 CYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEK 263
Query: 147 -----------------------KGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQ 183
KGQV T YYR + K GG+ WVQS AT+V +S+++
Sbjct: 264 TLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPH 323
Query: 184 NIICVNYVISGREYENFIMDCCQL 207
I+ VNYV++ EY+ + Q+
Sbjct: 324 CIVSVNYVLTDTEYKGLQLSLDQI 347
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 STLTKRGCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
S L G S ++LDGF F + DG+ +YISET S++LGLSQ ++
Sbjct: 71 SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVEL 119
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1 SV=2
Length = 669
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + ++GGY W Q+ ATVV + ++I+CV+++IS E ++
Sbjct: 293 LLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQVEETGVVLS 352
Query: 204 CCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGD 263
Q E + +R ++R PS D N D ++ R L PP + + D
Sbjct: 353 LEQTEQH-SRRPIQRGAPSQKDTPNPG------DSLDTPGPRILAFLHPPSLSEAALAAD 405
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 87 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 125
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 35/103 (33%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+ G S+FD+IH D EL + L +
Sbjct: 121 QLELIGHSIFDFIHPCDQEELQDAL---------------------------------TP 147
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSLD 114
+LS +R F +RMKSTLT RG + K++ ++ L+
Sbjct: 148 QQTLSRRKVEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLN 190
>sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster GN=sima PE=2 SV=2
Length = 1507
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 104/284 (36%), Gaps = 95/284 (33%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
I +++ G +++Y HQ DH E+ E L L LA ++ SG++T
Sbjct: 205 ITKIDTLGQQIWEYSHQCDHAEIKEALSLK----RELAQKVKDEPQQNSGVSTH------ 254
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL------------DGFA 117
R +R+K TLT RG + KS+ Y+ + +
Sbjct: 255 ---------------HRDLFVRLKCTLTSRGRSINIKSASYKVIHITGHLVVNAKGERLL 299
Query: 118 FALGS-----------------------DGRFLYISETVSIYLGLSQW------------ 142
A+G D RF Y+ + + LG S
Sbjct: 300 MAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQH 359
Query: 143 ------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNY 190
V++KGQ T YR + K GGY W+ S AT+V Q+++CVNY
Sbjct: 360 GADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYD--KLKPQSVVCVNY 417
Query: 191 VISGREYENFIMDCC-------QLEDYIQQRGVKREEPSNNDPE 227
VIS E ++ I Q E + Q ++E DPE
Sbjct: 418 VISNLENKHEIYSLAQQTAASEQKEQHHQAAETEKEPEKAADPE 461
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY 154
+++DGF L +G Y+SE V YLG+++ + GQ + Y
Sbjct: 177 QTMDGFLLVLSHEGDITYVSENVVEYLGITKIDTL--GQQIWEY 218
>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1-alpha OS=Xenopus laevis GN=hif1a PE=2
SV=1
Length = 805
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 136 YLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195
+L + + KGQV T YR++ K GGY WV++ ATV+ +SKN+ Q I+CVNYV+S
Sbjct: 287 HLTKPNYNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSEV 346
Query: 196 EYENFIM 202
++ I+
Sbjct: 347 VEKDLIL 353
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGL 40
+ Q E+TG SVFD+ H DH EL E L
Sbjct: 122 LTQFELTGHSVFDFTHPCDHEELREMLTF 150
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQV 144
++L+GF L +G +Y+SE V+ +GL+Q+++
Sbjct: 94 KALEGFVLVLTEEGDMIYLSENVNKCMGLTQFEL 127
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 134 SIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVIS 193
+ +L + ++ KGQV T YYR + K GG+ WVQS AT+V +S+++ I+ VNYV++
Sbjct: 274 TFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLT 333
Query: 194 GREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHDHLSP- 252
EY+ L+ + Q + + N P N + R ++ LSP
Sbjct: 334 DTEYKG-------LQLSLDQAASTKPSFTYNSPSNPVTENRRVGKSRVSRTKTKTRLSPY 386
Query: 253 ---PDIEDGTSEGDN 264
P SE D
Sbjct: 387 SQYPGFPTDRSESDQ 401
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQ 141
++LDGF F + DG+ LYISET S++LGLSQ
Sbjct: 86 QTLDGFIFVVAPDGKILYISETASVHLGLSQ 116
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQL 38
Q E+TG+S+++YIH ADH E+ L
Sbjct: 116 QEELTGNSIYEYIHPADHDEMTAVL 140
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a PE=1
SV=1
Length = 662
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 93/242 (38%), Gaps = 42/242 (17%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGL--GLSQGHGLASPG--------SANSEEGSGMN 63
Q+E+ G S+FD+IH D EL + L LS+ A+ G S + G +N
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDALTPRPSLSKKKSEAATGRHFSLRMKSTLTSRGRALN 178
Query: 64 TGTANPDV------SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFA 117
A V + +S G RS L +S L A
Sbjct: 179 LKAATWKVLHCSGHMRAYKPPAQTSPAGSPRSEPPLQCLVLICEAIPHPASLEPPLGRGA 238
Query: 118 FAL--GSDGRFLYISETVSIYLGLSQWQVI------------------------NKGQVL 151
F D +F Y E ++ G S +I +KGQ +
Sbjct: 239 FLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAV 298
Query: 152 THYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYI 211
T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++ Q E +
Sbjct: 299 TGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEENGVVLSLEQTEQHT 358
Query: 212 QQ 213
++
Sbjct: 359 RR 360
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 66 TANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAFALGSDGR 125
+A+ D +S+M L+ S Y R + + K G + ++L+GF L ++G
Sbjct: 46 SAHLDKASIMRLTIS--YLRMHRLCAAGEWNQVRKEGEPLDACYLKALEGFVMVLTAEGD 103
Query: 126 FLYISETVSIYLGLSQWQVI 145
Y+SE VS +LGLSQ ++I
Sbjct: 104 MAYLSENVSKHLGLSQLELI 123
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain-containing protein 1 OS=Rattus norvegicus
GN=Epas1 PE=2 SV=1
Length = 874
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TVV + +N Q I+CVNYV+S E + ++
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVVYNPRNLQPQCIMCVNYVLSEIEKNDVVVS 355
Query: 204 CCQLE 208
Q E
Sbjct: 356 MDQTE 360
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G N D
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KTGSGF--GKKNKDR 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
GN=Epas1 PE=1 SV=2
Length = 874
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+ KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E + +
Sbjct: 296 LCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFS 355
Query: 204 CCQLEDYIQ 212
Q E +
Sbjct: 356 MDQTESLFK 364
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + DV
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLTL----------------KNGSGF--GKKSKDV 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1 OS=Homo sapiens
GN=EPAS1 PE=1 SV=3
Length = 870
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 140 SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYEN 199
S + KGQV++ YR++ K+GGY W+++ TV+ + +N Q I+CVNYV+S E +
Sbjct: 292 SHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKND 351
Query: 200 FIMDCCQLEDYIQ 212
+ Q E +
Sbjct: 352 VVFSMDQTESLFK 364
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 33/104 (31%)
Query: 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDV 71
+ QVE+TG S+FD+ H DH E+ E L L + GSG G + D+
Sbjct: 121 LTQVELTGHSIFDFTHPCDHEEIRENLSL----------------KNGSGF--GKKSKDM 162
Query: 72 SSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
S+ +R F +RMK T+T RG + KS+ ++ L
Sbjct: 163 ST-------------ERDFFMRMKCTVTNRGRTVNLKSATWKVL 193
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1 SV=2
Length = 662
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 144 VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMD 203
+++KGQ +T YR + + GGY W Q+ ATVV + ++IICV+++IS E ++
Sbjct: 291 LLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRVEETGVVLS 350
Query: 204 CCQLEDYIQQ 213
Q E + ++
Sbjct: 351 LEQTEQHTRR 360
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 35/102 (34%)
Query: 14 QVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSS 73
Q+E+ G S+FD+IH D EL + L T P+
Sbjct: 119 QLELIGHSIFDFIHPCDQEELQDAL---------------------------TPRPN--- 148
Query: 74 LMSLSSSSSYKGCDRSFCIRMKSTLTKRG--CHFKSSGYRSL 113
LS +R F +RMKSTLT RG + K++ ++ L
Sbjct: 149 ---LSKKKLEAPTERHFSLRMKSTLTSRGRTLNLKAATWKVL 187
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 102 GCHFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVI 145
C+ K+ L+GF L ++G Y+SE VS +LGLSQ ++I
Sbjct: 85 ACYLKA-----LEGFVMVLTAEGDMAYLSENVSKHLGLSQLELI 123
>sp|P90953|HLH34_CAEEL Helix-loop-helix 34 OS=Caenorhabditis elegans GN=hlh-34 PE=2 SV=3
Length = 322
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQV 150
LDGF L G LYISET+SIYLGLSQ ++ V
Sbjct: 93 LDGFFVILDRRGDVLYISETISIYLGLSQVEMTGNAMV 130
>sp|G5EGD2|HIF1_CAEEL Hypoxia-inducible factor 1 OS=Caenorhabditis elegans GN=hif-1 PE=1
SV=1
Length = 719
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 65 GTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLDGFAF-ALGSD 123
GT N + S++ + S R C + ++ + + S ++L G +F L
Sbjct: 216 GTTNANASAMTKYTESPMGAFTTRHTCDMRITFVSDKFNYILKSELKTLMGTSFYELVHP 275
Query: 124 GRFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADE- 182
+ +S+++ ++ KG + T YYRL+ N W+Q+ AT + + +
Sbjct: 276 ADMMIVSKSMK--------ELFAKGHIRTPYYRLIAANDTLAWIQTEATTITHTTKGQKG 327
Query: 183 QNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKRE 219
Q +ICV+YV+ + E ++ C Q +K+E
Sbjct: 328 QYVICVHYVLGIQGAEESLVVCTDSMPAGMQVDIKKE 364
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKG 148
LDGF + SD LY++E+V++YLGL+Q + +
Sbjct: 94 LDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRA 129
>sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa GN=NCOA1 PE=2 SV=1
Length = 1440
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>sp|Q15788|NCOA1_HUMAN Nuclear receptor coactivator 1 OS=Homo sapiens GN=NCOA1 PE=1 SV=3
Length = 1441
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>sp|P70365|NCOA1_MOUSE Nuclear receptor coactivator 1 OS=Mus musculus GN=Ncoa1 PE=1 SV=2
Length = 1447
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +GR +++SE V+ YLG +Q +++N
Sbjct: 119 ALDGFFFVVNCEGRIVFVSENVTSYLGYNQEELMN 153
>sp|Q9Y6Q9|NCOA3_HUMAN Nuclear receptor coactivator 3 OS=Homo sapiens GN=NCOA3 PE=1 SV=1
Length = 1424
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
++LDGF F + DG +++SE V+ YL Q ++N
Sbjct: 119 QALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVN 154
>sp|O09000|NCOA3_MOUSE Nuclear receptor coactivator 3 OS=Mus musculus GN=Ncoa3 PE=1 SV=2
Length = 1398
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
++LDGF F + DG +++SE V+ YL Q ++N
Sbjct: 120 QALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVN 155
>sp|Q9WUI9|NCOA2_RAT Nuclear receptor coactivator 2 OS=Rattus norvegicus GN=Ncoa2 PE=1
SV=1
Length = 1465
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+LDGF F + +G +++SE V+ YL +Q +++NK
Sbjct: 122 ALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNK 157
>sp|Q15596|NCOA2_HUMAN Nuclear receptor coactivator 2 OS=Homo sapiens GN=NCOA2 PE=1 SV=2
Length = 1464
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+LDGF F + +G +++SE V+ YL +Q +++NK
Sbjct: 122 ALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNK 157
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2
Length = 848
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 88 RSFCIRMKSTL--TKRGCHFKSSGYRSLDGFAFA----LGSDGRFLYISETVSIYLGLSQ 141
++F R K L T GC K R + G+ A GS +F++ ++ +Y S
Sbjct: 283 KNFIFRTKHKLDFTPIGCDAKG---RIVLGYTEAELCTRGSGYQFIHAADM--LYCAESH 337
Query: 142 WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
++I G+ +RL+ KN +TWVQS A ++ KN II ++ E
Sbjct: 338 IRMIKTGESGMIVFRLLTKNNRWTWVQSNARLL--YKNGRPDYIIVTQRPLTDEE 390
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 71 VSSLMSLSSSSSYKGCDRSFCIRMKSTLTKRG-----CHFKSSGYR-------------S 112
+ L L S SY F + +KS+ T+R C +++ +R +
Sbjct: 64 LDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNC--RAANFREGLNLQEGEFLLQA 121
Query: 113 LDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
L+GF + +D Y S T+ YLG Q VI++
Sbjct: 122 LNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQ 156
>sp|Q61026|NCOA2_MOUSE Nuclear receptor coactivator 2 OS=Mus musculus GN=Ncoa2 PE=1 SV=3
Length = 1462
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
+LDGF F + +G +++SE V+ YL +Q +++NK
Sbjct: 122 ALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNK 157
>sp|Q9W705|NCOA2_XENLA Nuclear receptor coactivator 2 OS=Xenopus laevis GN=ncoa2 PE=2 SV=1
Length = 1516
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +G +++SE V+ YL +Q +++N
Sbjct: 119 ALDGFFFVVNREGNVVFVSENVTQYLRYNQEELMN 153
>sp|B5DE09|NCOA2_XENTR Nuclear receptor coactivator 2 OS=Xenopus tropicalis GN=ncoa2 PE=2
SV=1
Length = 1440
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +G +++SE V+ YL +Q +++N
Sbjct: 122 ALDGFFFVVNREGNVVFVSENVTQYLRYNQEELMN 156
>sp|Q98TW1|NCOA2_DANRE Nuclear receptor coactivator 2 OS=Danio rerio GN=ncoa2 PE=1 SV=1
Length = 1505
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
+LDGF F + +G +++SE V+ YL +Q +++N
Sbjct: 123 ALDGFFFVVNMEGNIVFVSENVTQYLRYNQEELMN 157
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 154 YYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQ 213
YYR + K + W+Q+ + N+ + I+C + V+S Y +
Sbjct: 338 YYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVS----------------YAEV 381
Query: 214 RGVKREEPSNNDPENDSPDADREDGRNSG 242
R +R E E PDA + G++SG
Sbjct: 382 RAERRRELGI---EESLPDATADKGQDSG 407
>sp|P16497|KINA_BACSU Sporulation kinase A OS=Bacillus subtilis (strain 168) GN=kinA PE=1
SV=2
Length = 606
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 119 ALGSDGRFLYISETVSIYLGLSQWQVI---------------------NKGQVLTHYYRL 157
L S+GR +YIS ++LG Q ++I N+ ++ +R
Sbjct: 20 VLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYNEHHLMPCTFRF 79
Query: 158 MNKNGGYTWVQSCATVVCSSKNADEQNIIC 187
+ K+ WV++ +V + E+ II
Sbjct: 80 IKKDHTIVWVEAAVEIVTTRAERTEREIIL 109
>sp|O57539|NCOA3_XENLA Nuclear receptor coactivator 3 OS=Xenopus laevis GN=ncoa3 PE=1 SV=1
Length = 1391
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 111 RSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVIN 146
++LDGF + + +G +++SE V+ YL Q ++N
Sbjct: 121 QALDGFLYVVNREGSIVFVSENVTQYLQYKQEDLVN 156
>sp|Q75NT5|AHRR_RAT Aryl hydrocarbon receptor repressor OS=Rattus norvegicus GN=Ahrr
PE=2 SV=1
Length = 701
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
SL+GFA + ++G Y S T+ YLG Q V+++
Sbjct: 116 SLNGFALVVSAEGMIFYASATIVDYLGFHQTDVMHQ 151
>sp|O44712|AHR_CAEEL Aryl hydrocarbon receptor protein 1 OS=Caenorhabditis elegans
GN=ahr-1 PE=1 SV=1
Length = 602
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 105 FKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
F+ +SL GF L +G Y SE V YLG Q V+++
Sbjct: 129 FEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQ 171
>sp|A9YTQ3|AHRR_HUMAN Aryl hydrocarbon receptor repressor OS=Homo sapiens GN=AHRR PE=2
SV=3
Length = 701
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
SL+GFA + ++G Y S T+ YLG Q V+++
Sbjct: 122 SLNGFALVVSAEGTIFYASATIVDYLGFHQTDVMHQ 157
>sp|Q3U1U7|AHRR_MOUSE Aryl hydrocarbon receptor repressor OS=Mus musculus GN=Ahrr PE=1
SV=1
Length = 701
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 112 SLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINK 147
SL+GFA + ++G Y S T+ YLG Q V+++
Sbjct: 116 SLNGFALVVSAEGMIFYASATIVDYLGFHQTDVMHQ 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,108,455
Number of Sequences: 539616
Number of extensions: 5325882
Number of successful extensions: 15079
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 14495
Number of HSP's gapped (non-prelim): 602
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)