Query psy17809
Match_columns 294
No_of_seqs 160 out of 440
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 23:35:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3558|consensus 100.0 2.8E-59 6.2E-64 470.2 13.1 213 2-253 146-431 (768)
2 KOG3560|consensus 100.0 4.3E-37 9.4E-42 303.6 6.3 187 2-200 138-391 (712)
3 KOG3559|consensus 100.0 9.4E-37 2E-41 293.8 3.3 169 2-209 106-344 (598)
4 PF14598 PAS_11: PAS domain; P 99.9 2.3E-23 5E-28 170.1 5.5 76 122-197 10-111 (111)
5 KOG3561|consensus 99.8 1.1E-19 2.3E-24 189.3 2.5 189 2-196 122-479 (803)
6 KOG3753|consensus 99.0 3.9E-10 8.4E-15 117.9 4.6 166 12-202 217-446 (1114)
7 PF08447 PAS_3: PAS fold; Int 98.2 1.6E-06 3.5E-11 65.3 3.5 63 126-189 1-91 (91)
8 PF14598 PAS_11: PAS domain; P 96.9 0.00053 1.1E-08 56.0 1.8 34 4-39 22-56 (111)
9 KOG3561|consensus 96.7 0.00063 1.4E-08 72.5 1.8 74 122-195 249-347 (803)
10 PF13426 PAS_9: PAS domain; PD 95.0 0.029 6.3E-07 41.8 3.7 66 122-188 9-98 (104)
11 PF00989 PAS: PAS fold; Inter 93.6 0.043 9.3E-07 41.6 1.9 36 3-40 29-64 (113)
12 smart00086 PAC Motif C-termina 93.6 0.55 1.2E-05 25.9 6.3 37 154-191 3-39 (43)
13 PF00989 PAS: PAS fold; Inter 92.8 0.093 2E-06 39.7 2.7 66 122-188 19-109 (113)
14 PF08447 PAS_3: PAS fold; Int 91.7 0.069 1.5E-06 39.8 0.8 36 2-40 6-45 (91)
15 PRK09776 putative diguanylate 90.2 0.53 1.1E-05 50.8 6.0 71 122-194 428-523 (1092)
16 cd00130 PAS PAS domain; PAS mo 90.2 0.54 1.2E-05 30.6 4.0 65 122-187 10-98 (103)
17 KOG3558|consensus 87.4 0.17 3.8E-06 53.4 -0.0 35 2-38 291-325 (768)
18 PF08448 PAS_4: PAS fold; Int 85.8 1.6 3.4E-05 32.7 4.5 71 122-194 13-107 (110)
19 cd00130 PAS PAS domain; PAS mo 80.1 0.78 1.7E-05 29.8 0.8 36 3-40 20-55 (103)
20 PRK13559 hypothetical protein; 79.1 3.4 7.3E-05 38.7 5.0 70 123-193 65-158 (361)
21 PF13426 PAS_9: PAS domain; PD 78.3 1 2.2E-05 33.3 1.0 37 2-40 18-54 (104)
22 KOG3753|consensus 77.2 1 2.2E-05 49.1 0.9 28 7-36 353-380 (1114)
23 TIGR00229 sensory_box PAS doma 75.3 5.2 0.00011 27.4 3.9 66 122-189 21-111 (124)
24 PRK13558 bacterio-opsin activa 73.0 5.1 0.00011 41.3 4.8 71 122-193 169-263 (665)
25 PRK11359 cyclic-di-GMP phospho 68.6 5.7 0.00012 41.3 4.0 72 121-193 153-249 (799)
26 PRK13557 histidine kinase; Pro 66.1 6.1 0.00013 38.5 3.5 66 122-188 51-140 (540)
27 PRK09776 putative diguanylate 64.6 5.9 0.00013 42.9 3.3 67 121-188 300-391 (1092)
28 TIGR02040 PpsR-CrtJ transcript 63.5 3.7 7.9E-05 40.2 1.4 35 3-39 24-58 (442)
29 TIGR02040 PpsR-CrtJ transcript 63.0 10 0.00022 37.1 4.3 171 3-194 162-363 (442)
30 smart00091 PAS PAS domain. PAS 60.7 4.6 9.9E-05 24.1 1.0 34 4-39 30-63 (67)
31 PF08448 PAS_4: PAS fold; Int 59.5 4.3 9.3E-05 30.2 0.8 36 4-41 24-59 (110)
32 TIGR02938 nifL_nitrog nitrogen 58.7 6.8 0.00015 37.3 2.3 68 122-190 22-113 (494)
33 PRK13560 hypothetical protein; 56.3 16 0.00035 37.6 4.7 72 122-193 222-318 (807)
34 PRK10060 RNase II stability mo 48.4 23 0.00049 37.2 4.3 71 122-193 129-224 (663)
35 TIGR00229 sensory_box PAS doma 43.3 13 0.00029 25.2 1.2 35 3-39 31-65 (124)
36 PRK11091 aerobic respiration c 41.7 33 0.00071 36.1 4.3 74 120-194 171-268 (779)
37 PF12860 PAS_7: PAS fold 26.0 1.2E+02 0.0026 23.5 4.2 18 122-139 13-30 (115)
38 PRK11359 cyclic-di-GMP phospho 25.5 1E+02 0.0023 32.0 4.8 53 122-174 30-110 (799)
39 COG2202 AtoS FOG: PAS/PAC doma 23.1 2.4E+02 0.0053 20.8 5.3 54 122-175 130-210 (232)
40 PRK13560 hypothetical protein; 22.1 1.1E+02 0.0023 31.7 4.0 41 153-194 550-590 (807)
41 KOG3559|consensus 21.9 85 0.0019 32.1 3.1 27 113-139 88-114 (598)
No 1
>KOG3558|consensus
Probab=100.00 E-value=2.8e-59 Score=470.22 Aligned_cols=213 Identities=44% Similarity=0.666 Sum_probs=179.5
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
|.|+.||| ++||||||+||||||||+||+||+|||++.+.. |....+ +
T Consensus 146 EtVS~yLG--LSQvELTG~SvFDfiHP~DheE~~eqL~l~~~~------p~~~es------------------~------ 193 (768)
T KOG3558|consen 146 ETVSIYLG--LSQVELTGSSVFDFIHPCDHEEIAEQLGLRLTT------PEVKES------------------T------ 193 (768)
T ss_pred chhHhhhC--ccceeeecchhhhccCccCHHHHHHHhccccCC------Cccccc------------------c------
Confidence 78999999 889999999999999999999999999987531 211100 0
Q ss_pred CCCCCCcceeeeccccccCCcc--cccCCCceeee--e------------------------e--EEeec----------
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGC--HFKSSGYRSLD--G------------------------F--AFALG---------- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~--~lkssgyKViH--G------------------------~--aialP---------- 121 (294)
....+|+||+|||||||+||+ |||+++||||| | | |+++|
T Consensus 194 -~~~teRsFflRMKsTLT~RGRtlnlKSa~yKvlh~tgh~rv~~~~sh~s~~~g~~~Pl~~lV~~a~alp~ps~~EipL~ 272 (768)
T KOG3558|consen 194 -DTSTERSFFLRMKSTLTKRGRTLNLKSAGYKVLHCTGHLRVYNNPSHNSPLCGYKEPLLGLVALAEALPPPSYTEIPLD 272 (768)
T ss_pred -cCccceeEEEEeeeeeccCCceeeeeccceeEEEEeeeeeeccCCCCCCcccCccccchheeeeeccCCCCcccccccC
Confidence 013489999999999999994 99999999999 1 2 33444
Q ss_pred ---------cCceEEeeccccceeecc------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEE
Q psy17809 122 ---------SDGRFLYISETVSIYLGL------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQ 168 (294)
Q Consensus 122 ---------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlq 168 (294)
|||||+|||+||+++||| +|++||.|||++|+|||||+|+|||||+|
T Consensus 273 ~~~FvtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQ 352 (768)
T KOG3558|consen 273 CHMFVTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQ 352 (768)
T ss_pred CceeEEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEE
Confidence 999999999999999999 79999999999999999999999999999
Q ss_pred EEEEEeecCCCCCcCcEEEEeEEecCccccceecccccccccccccCccccCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q psy17809 169 SCATVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLEDYIQQRGVKREEPSNNDPENDSPDADREDGRNSGDSRNHD 248 (294)
Q Consensus 169 T~~~vv~n~kn~~~e~IVcvn~vlS~~E~~~~~l~~~Q~~~~~~~~~~k~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 248 (294)
|+|||+||+||.++++|||||||||.+|+++++|+++|+|+.+. +||.|....+|.-...|+. -....|++|.+
T Consensus 353 TqATVi~~tkn~q~q~IicVnYVlS~~e~~~~vl~~~Q~e~~~~--~i~~~~~~~~dk~~~eP~~----~~~t~g~~ii~ 426 (768)
T KOG3558|consen 353 TQATVIYNTKNPQEQNIICVNYVLSNIEEEDLVLDLDQLPASVK--PIKEESSDGSDKSKPEPEI----LAPTPGTPIIS 426 (768)
T ss_pred eeeEEEecCCCCCcceEEEEEeeeccccccCceeeHhhCccccc--cccccccCcccccCCCccc----cCCCCCCcccc
Confidence 99999999999999999999999999999999999999999876 5777777677776666643 33445555555
Q ss_pred CCCCC
Q psy17809 249 HLSPP 253 (294)
Q Consensus 249 ~~~~~ 253 (294)
...+.
T Consensus 427 ~~~~~ 431 (768)
T KOG3558|consen 427 LENGD 431 (768)
T ss_pred ccCCc
Confidence 44444
No 2
>KOG3560|consensus
Probab=100.00 E-value=4.3e-37 Score=303.56 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=151.6
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCccccccccC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLA--SPGSANSEEGSGMNTGTANPDVSSLMSLSS 79 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~--~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~ 79 (294)
+.||+||||| |+|+|+||||||||.+|++||++||.|+..+++-.. .+.....+++- +..-.. +...+
T Consensus 138 ~tIedYLGFh--QSDV~HQsVYdlIHseDR~dfqrQLhwa~~ppq~~~s~q~~~e~~~~~~--~~~~~~------~d~~p 207 (712)
T KOG3560|consen 138 ATIEDYLGFH--QSDVMHQSVYDLIHSEDRQDFQRQLHWAMDPPQVVFSQQPPLETGDDAI--LRAQEW------GDGTP 207 (712)
T ss_pred hhHHhhhccc--ccchhhhhHHHHhhhhhHHHHHHHHhhccCCchhhccCCCccccccccc--eeeecc------CccCC
Confidence 4689999988 999999999999999999999999999986653211 11111111110 000111 12234
Q ss_pred CCCCCCCCcceeeeccccccCC-cc-cccC-CCceeeee-----------------eEEeec------------------
Q psy17809 80 SSSYKGCDRSFCIRMKSTLTKR-GC-HFKS-SGYRSLDG-----------------FAFALG------------------ 121 (294)
Q Consensus 80 ~~~~~~~~RsF~cRMKc~Lt~R-g~-~lks-sgyKViHG-----------------~aialP------------------ 121 (294)
+.++..++|+|+||+||+|++. |+ .++. +..|++|| ||||.|
T Consensus 208 pens~yleRcficR~RCLLDnTsGFLamdfqGklk~LhGqkkk~~~g~~lpP~LaLf~iatP~~pPS~lEi~~k~~i~rt 287 (712)
T KOG3560|consen 208 PENSAYLERCFICRFRCLLDNTSGFLAMDFQGKLKFLHGQKKKAPSGAMLPPRLALFCIATPFLPPSALEIKMKSAILRT 287 (712)
T ss_pred cccchHHhhhheeeEEEeecCCcceeeeecccceeeecCCcccCCCCccCCCceeEEEEecCCCCchhhhhhhhhhhhhc
Confidence 5567789999999999999997 55 5554 45899996 789876
Q ss_pred ---cCceEEeeccccceeecc------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEe
Q psy17809 122 ---SDGRFLYISETVSIYLGL------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 122 ---lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv 174 (294)
+|+..+.||+++..+||| +|.++|+.|.+++.+||.++|+|.|.|||+.+.++
T Consensus 288 KhklDfa~vs~Dak~k~~lgy~eaEL~~m~gY~lvH~~D~~y~Aeah~e~iktgeSGmlvyR~qtk~grw~wvqssarll 367 (712)
T KOG3560|consen 288 KHKLDFALVSMDAKVKATLGYCEAELHGMPGYNLVHVEDKVYMAEAHSEGIKTGESGMLVYREQTKAGRWAWVQSSARLL 367 (712)
T ss_pred ccccccceeccchhhhhhhccchhhccCCCccceeehhhhhhhhHHHHHHhhcCCcceEEEEEeecCCcEEEeeccceee
Confidence 999999999999999999 68889999999999999999999999999999999
Q ss_pred ecCCCCCcCcEEEEeEEecCccccce
Q psy17809 175 CSSKNADEQNIICVNYVISGREYENF 200 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS~~E~~~~ 200 (294)
| ||+++++|||+++.+.++|+.++
T Consensus 368 y--kngkPD~vi~thr~l~DeEgh~l 391 (712)
T KOG3560|consen 368 Y--KNGKPDLVIDTHRGLGDEEGHRL 391 (712)
T ss_pred e--ecCCCCEEEecCCCccchHHHHH
Confidence 9 99999999999999999998775
No 3
>KOG3559|consensus
Probab=100.00 E-value=9.4e-37 Score=293.77 Aligned_cols=169 Identities=37% Similarity=0.619 Sum_probs=150.8
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
|..+.||| +.||||+|.||||||||.||+||...|..-. . +
T Consensus 106 ETaSvhLG--LSQVElTGNsi~eYIH~~D~demna~L~~h~--H-------------------------~---------- 146 (598)
T KOG3559|consen 106 ETASVHLG--LSQVELTGNSIYEYIHPQDHDEMNAVLTAHQ--H-------------------------L---------- 146 (598)
T ss_pred cceeeeec--ceeeEeecchhhhhhcccchHHHHHHHhhhh--h-------------------------h----------
Confidence 56788999 8899999999999999999999999987531 0 0
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee--e-----------------------eEE--eec-------------
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD--G-----------------------FAF--ALG------------- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH--G-----------------------~ai--alP------------- 121 (294)
..-..||+||.||||.|.+|+..++.+|||||| | ||+ .+|
T Consensus 147 qeyeIErsfflrmkCvlakrnaglt~sg~kvihcSgylKir~y~~~m~p~dscyqn~glvAvG~slP~saiteikl~sNm 226 (598)
T KOG3559|consen 147 QEYEIERSFFLRMKCVLAKRNAGLTCSGYKVIHCSGYLKIRQYELDMSPNDSCYQNVGLVAVGHSLPPSAITEIKLHSNM 226 (598)
T ss_pred hhhhhhhhhhhhhhhhheeccccccccCcceEeecCcceEEEEeeccCCccchhheeeeEEecCCCCcccceEEEeccce
Confidence 012478999999999999999999999999999 1 333 233
Q ss_pred ------cCceEEeeccccceeecc------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEEEEE
Q psy17809 122 ------SDGRFLYISETVSIYLGL------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCA 171 (294)
Q Consensus 122 ------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~ 171 (294)
+|||++|.|.|+..++|| .|..|+.|||+.|+||||+.|.|||||+|+.+
T Consensus 227 FmfraslDlkliF~D~rv~qltgYepqdliektLY~~ih~~D~~~lr~~H~~ll~kGqvtTkYYR~l~k~ggwvwvqsya 306 (598)
T KOG3559|consen 227 FMFRASLDLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIHGCDSFHLRCAHHLLLVKGQVTTKYYRFLLKQGGWVWVQSYA 306 (598)
T ss_pred EEEEeecceEEEeehhhHHHhhCCCchhhhhHHHHHHhhhhhHHHHHHHHHHHHhccccccHHHHHHHcCCceEEEEEee
Confidence 999999999999999999 68889999999999999999999999999999
Q ss_pred EEeecCCCCCcCcEEEEeEEecCccccceecccccccc
Q psy17809 172 TVVCSSKNADEQNIICVNYVISGREYENFIMDCCQLED 209 (294)
Q Consensus 172 ~vv~n~kn~~~e~IVcvn~vlS~~E~~~~~l~~~Q~~~ 209 (294)
+++.|.++++++|||.+|||+++.|++++.|+..|...
T Consensus 307 t~vHnSrSSR~~fivSvnyVls~~EyK~LqLsl~Q~s~ 344 (598)
T KOG3559|consen 307 TFVHNSRSSRPHFIVSVNYVLSELEYKELQLSLEQVST 344 (598)
T ss_pred EEEeccccCCcceEEeeeeeeehhhhhhheechhhhcc
Confidence 99999999999999999999999999999999999854
No 4
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=99.88 E-value=2.3e-23 Score=170.13 Aligned_cols=76 Identities=39% Similarity=0.708 Sum_probs=71.4
Q ss_pred cCceEEeeccc-cceeecc-------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SDGRFLYISET-VSIYLGL-------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD~kf~~~D~R-vs~~LGy-------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
+||||+|||+| ++.+||| +|++|+.+||..+.+|||++|+|+||||||+|++++
T Consensus 10 ~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~ 89 (111)
T PF14598_consen 10 LDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFY 89 (111)
T ss_dssp TTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEE
T ss_pred CCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEE
Confidence 89999999999 8999999 577888999999999999999999999999999999
Q ss_pred cCCCCCcCcEEEEeEEecCccc
Q psy17809 176 SSKNADEQNIICVNYVISGREY 197 (294)
Q Consensus 176 n~kn~~~e~IVcvn~vlS~~E~ 197 (294)
||||+++++|||+|+||++.|+
T Consensus 90 n~~~~~~~~Iv~~n~vlse~e~ 111 (111)
T PF14598_consen 90 NPWTSKPEFIVCTNTVLSEEEA 111 (111)
T ss_dssp ETTTTCEEEEEEEEEEESCEB-
T ss_pred CCCCCCccEEEEEEEEeccCCC
Confidence 9999999999999999999885
No 5
>KOG3561|consensus
Probab=99.76 E-value=1.1e-19 Score=189.30 Aligned_cols=189 Identities=26% Similarity=0.354 Sum_probs=132.6
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC-------------------
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGM------------------- 62 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~------------------- 62 (294)
|.|++||| +.|.||+|+||||+|||+|.+++++||..+.+.. ....+..+...+.
T Consensus 122 eSVT~~L~--y~QsDL~~qSly~ilhp~d~~~~~~ql~~r~~e~----~f~~r~l~~~~~~~~~E~~~~~~~~~~~~~~~ 195 (803)
T KOG3561|consen 122 ESVTSVLG--YLQSDLMGQSLYDILHPLDNDKPREQLSPRSNEH----TFNCRLLDGKTGPPPEEAVKFYGNFQCFTNSQ 195 (803)
T ss_pred cchHHhhC--cCHHHHhcchHHHhcCccccCccccccccccccc----ccchhhhccCCCCchHHhhhhhhhcccccccC
Confidence 67999999 8899999999999999999999999999433211 1111111111000
Q ss_pred --------------------------CCCCCCCCccccccccCCCCCCCCCcceeeeccccccC------------Ccc-
Q psy17809 63 --------------------------NTGTANPDVSSLMSLSSSSSYKGCDRSFCIRMKSTLTK------------RGC- 103 (294)
Q Consensus 63 --------------------------~~~t~~p~v~a~~~~~~~~~~~~~~RsF~cRMKc~Lt~------------Rg~- 103 (294)
.+-+.+|+.-..|.....+++.+.||+|+||||+...+ +|+
T Consensus 196 ~~s~e~~~~~i~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~id~~~~~~aRrsfe~r~r~~~~r~~p~~gy~~~~~~g~~ 275 (803)
T KOG3561|consen 196 PKSIEGFQSTICRQRRKAEGDRVCFGVSRLTTPQLIGEMCIIDTRLCEGARRSFECRMRFCDHRAPPIIGYEPFEVLGTS 275 (803)
T ss_pred ccccccccccceeeccccccCccccccccccchhhccceeccccccccccccchhhhhhhccccCCccccccceeecccc
Confidence 01122333333333345567778899999999997422 221
Q ss_pred ------ccc-CCCceeee--e----------------------------------------eEEe----------ec---
Q psy17809 104 ------HFK-SSGYRSLD--G----------------------------------------FAFA----------LG--- 121 (294)
Q Consensus 104 ------~lk-ssgyKViH--G----------------------------------------~aia----------lP--- 121 (294)
+.. ...|.++| | +|++ .|
T Consensus 276 ~~~~~~~~~~~~~y~~~h~~g~~~s~~~~c~~~~~t~~~q~~~~~~d~~i~~~~~~s~p~~v~~~~~~vs~~~~~~p~~~ 355 (803)
T KOG3561|consen 276 RNYDYYHKDDLPNYRVIHCTGYIKSAGPSCKYRFLTKGQQWIWLPQDDYISYHQWNSKPCLVAIGRLVVSYAEVRVPSRA 355 (803)
T ss_pred ccccccccCcccceEEEeeeeeEeccCCcceeccccccccccccCccccccccccCCCcceeEecccccchhhccCcccc
Confidence 111 12377887 1 1111 01
Q ss_pred ------------------------cCceEEeeccccceeecc------------------------ceeeEe-eecceee
Q psy17809 122 ------------------------SDGRFLYISETVSIYLGL------------------------SQWQVI-NKGQVLT 152 (294)
Q Consensus 122 ------------------------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL-~KGQ~~t 152 (294)
.|++|++||+|+..++|| +++.+. -+++..+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~sr~~~~g~~~~~dqr~~~i~~~~~~~~~g~ss~~s~h~~d~~~~~~s~~~~~~~s~~~~~ 435 (803)
T KOG3561|consen 356 DMSIEGPRQQPSSPQSSEFISRSSSDGSFTFVDQRASAILGYQPQELLGRSSYESSHPADSSPLSESLKQVQALSEQRST 435 (803)
T ss_pred cCccccccccccCcccchhhcccCcCCceeccccccccccccCchhhcCcccccccCccccchhhchHHHHHHhcccccc
Confidence 799999999999999999 222333 3566778
Q ss_pred eEEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecCcc
Q psy17809 153 HYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196 (294)
Q Consensus 153 ~~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~~E 196 (294)
..||++.|+|.|+|+++.|+.+.|+|+++.++|||+|.++....
T Consensus 436 ~~yr~~~~n~~~~~~~~~~~~~~n~~s~~~~~~~~~ns~~~~~s 479 (803)
T KOG3561|consen 436 LLYRFRSKNGSSIPNKSSAYLFSNPGSDEVEYIVCTNSNVPTPS 479 (803)
T ss_pred cccccccCCCCccccccccccccCCCccccceeeeccccccccc
Confidence 88999999999999999999999999999999999999988544
No 6
>KOG3753|consensus
Probab=98.97 E-value=3.9e-10 Score=117.89 Aligned_cols=166 Identities=14% Similarity=0.174 Sum_probs=113.9
Q ss_pred ceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCccee
Q psy17809 12 ILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSSYKGCDRSFC 91 (294)
Q Consensus 12 ~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~~~~~~~RsF~ 91 (294)
...--|.|.++-||+||.|+.-|..++.....+.++.- ++ ..+. ...| ..+|+||
T Consensus 217 ~krDv~s~a~FvdflapqD~~vF~sfta~~~lp~ws~~----------s~--~ds~------------~~~c-~~~ks~f 271 (1114)
T KOG3753|consen 217 CKRDVLSSAKFVDFLAPQDVGVFYSFTARYKLPLWSMG----------SS--ADSF------------TQEC-AEEKSFF 271 (1114)
T ss_pred CchhhhccchhhhhcchhhhhhhhhccccccCcccccc----------cc--ccch------------hhhh-hhhccee
Confidence 34556778899999999999999999886543322110 00 0000 0112 4679999
Q ss_pred eeccccccCCc-c---cccC---------------------------CCceeee------eeEEeeccCceEEeeccccc
Q psy17809 92 IRMKSTLTKRG-C---HFKS---------------------------SGYRSLD------GFAFALGSDGRFLYISETVS 134 (294)
Q Consensus 92 cRMKc~Lt~Rg-~---~lks---------------------------sgyKViH------G~aialPlD~kf~~~D~Rvs 134 (294)
||..-..+.-. . .|.. ++|++-| =|++.-.-..-|.+||.+..
T Consensus 272 cRisgr~~~~~~~~y~PFRl~pyl~ev~~~~~~~s~~ccLllaerihSgYeAPrIps~KriFtT~HTptClf~hVDeaAV 351 (1114)
T KOG3753|consen 272 CRISGRKDRENEIRYHPFRLTPYLVEVRDQQGAESQPCCLLLAERIHSGYEAPRIPSNKRIFTTTHTPTCLFQHVDEAAV 351 (1114)
T ss_pred eeeecccCCcCccccCcccccceeEEeccccccCcCcceeehhhhhhcccccCcCCcccceeEeccCCcceeeecchhhh
Confidence 99887654321 0 1111 1122111 02222225678999999999
Q ss_pred eeecc------------------------ceeeEeeec-ce--eeeEEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEE
Q psy17809 135 IYLGL------------------------SQWQVINKG-QV--LTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIIC 187 (294)
Q Consensus 135 ~~LGy------------------------sH~~LL~KG-Q~--~t~~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVc 187 (294)
-+||| .|+.|++++ +. ...-|||.+.||.||-++|.|..|.|||+.|.+|||.
T Consensus 352 p~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~yv~ldTeWSsFVNPWSRKieFVvG 431 (1114)
T KOG3753|consen 352 PLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSYVRLDTEWSSFVNPWSRKIEFVVG 431 (1114)
T ss_pred hhhccCchhhhccchhhhhcCCchHHHHHHHHHHHHhCCCCcccccceeeeecCCcEEEEechhhhccChhhhheeeeee
Confidence 99999 567788664 44 2345999999999999999999999999999999999
Q ss_pred EeEEecCccccceec
Q psy17809 188 VNYVISGREYENFIM 202 (294)
Q Consensus 188 vn~vlS~~E~~~~~l 202 (294)
-|+|.+..-..|++-
T Consensus 432 RHrVrt~PlneDVFa 446 (1114)
T KOG3753|consen 432 RHRVRTGPLNEDVFA 446 (1114)
T ss_pred eceeeccCccccccc
Confidence 999998777666543
No 7
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=98.17 E-value=1.6e-06 Score=65.33 Aligned_cols=63 Identities=24% Similarity=0.456 Sum_probs=49.6
Q ss_pred EEeeccccceeecc---------------------------ceee-EeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 126 FLYISETVSIYLGL---------------------------SQWQ-VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 126 f~~~D~Rvs~~LGy---------------------------sH~~-LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
++|+++++..++|| .... .+.++.....-||++.|+|.|+|++..+.+++ .
T Consensus 1 ~i~~s~~~~~i~G~~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~~~~~-d 79 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEIGKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRGRPIF-D 79 (91)
T ss_dssp -EEE-THHHHHHTS-HHHHTCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEEEEEE-T
T ss_pred CEEEeHHHHHHhCCCHHHhccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEEEEEE-C
Confidence 57899999999999 1223 44567778888999999999999999999999 5
Q ss_pred CCCCcCcEEEEe
Q psy17809 178 KNADEQNIICVN 189 (294)
Q Consensus 178 kn~~~e~IVcvn 189 (294)
.++++..+++|+
T Consensus 80 ~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 80 ENGKPIRIIGVI 91 (91)
T ss_dssp TTS-EEEEEEEE
T ss_pred CCCCEEEEEEEC
Confidence 778889999985
No 8
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=96.86 E-value=0.00053 Score=55.96 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=28.8
Q ss_pred hhhhhCCcceeeeecCCccccccCcccHHH-HHHHhc
Q psy17809 4 FEQHQGTHILQVEMTGSSVFDYIHQADHTE-LAEQLG 39 (294)
Q Consensus 4 ~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E-~reQL~ 39 (294)
|..+|| +.--||+|.|+|||+||+|... +++.+.
T Consensus 22 v~~~lg--y~~~eLvG~s~y~~~H~~D~~~~~~~~~~ 56 (111)
T PF14598_consen 22 VSSLLG--YLPEELVGRSIYDFVHPDDLQRVLKQHHR 56 (111)
T ss_dssp HHHHHS--S-HHHHTTSBGGGGBSCCTHHHHHHHHHH
T ss_pred ChhhcC--CCcHHHcCCchHHhCCHhhhhhHHHHHHH
Confidence 678899 6699999999999999999998 766554
No 9
>KOG3561|consensus
Probab=96.75 E-value=0.00063 Score=72.48 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=64.2
Q ss_pred cCceEEeeccccceeecc-------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGL-------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGy-------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
+-.+|.+|+.|+-.+-|| +|.+++.++.--.++|||++|+-.|||+++..++-+.
T Consensus 249 fe~r~r~~~~r~~p~~gy~~~~~~g~~~~~~~~~~~~~~~y~~~h~~g~~~s~~~~c~~~~~t~~~q~~~~~~d~~i~~~ 328 (803)
T KOG3561|consen 249 FECRMRFCDHRAPPIIGYEPFEVLGTSRNYDYYHKDDLPNYRVIHCTGYIKSAGPSCKYRFLTKGQQWIWLPQDDYISYH 328 (803)
T ss_pred hhhhhhhccccCCccccccceeeccccccccccccCcccceEEEeeeeeEeccCCcceeccccccccccccCcccccccc
Confidence 557888999997777677 6777888887778899999999999999999998899
Q ss_pred CCCCCcCcEEEEeEEecCc
Q psy17809 177 SKNADEQNIICVNYVISGR 195 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~~ 195 (294)
.||.++.+|||+..+++-.
T Consensus 329 ~~~s~p~~v~~~~~~vs~~ 347 (803)
T KOG3561|consen 329 QWNSKPCLVAIGRLVVSYA 347 (803)
T ss_pred ccCCCcceeEecccccchh
Confidence 9999999999999987644
No 10
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=95.04 E-value=0.029 Score=41.75 Aligned_cols=66 Identities=26% Similarity=0.470 Sum_probs=48.6
Q ss_pred cCceEEeeccccceeeccce------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQ------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|+++++|.+....++||.. ...+.++.....-.++..++|..+|++..+..+++.
T Consensus 9 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~ 88 (104)
T PF13426_consen 9 PDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWVEVSASPIRDE 88 (104)
T ss_dssp TTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEEEEEEEEEEET
T ss_pred CcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEEEEEEEEEECC
Confidence 58999999999999999911 113334555555688899999999999999999875
Q ss_pred CCCCcCcEEEE
Q psy17809 178 KNADEQNIICV 188 (294)
Q Consensus 178 kn~~~e~IVcv 188 (294)
. ++..+++++
T Consensus 89 ~-g~~~~~i~~ 98 (104)
T PF13426_consen 89 D-GEITGIIGI 98 (104)
T ss_dssp T-SSEEEEEEE
T ss_pred C-CCEEEEEEE
Confidence 4 444565555
No 11
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=93.58 E-value=0.043 Score=41.61 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=30.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.+++.|| +..-|++|++++|++|++|..++++.+..
T Consensus 29 a~~~l~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (113)
T PF00989_consen 29 AAEELLG--YSREELIGKSLFDLIHPEDRRELRERLRQ 64 (113)
T ss_dssp HHHHHHS--S-HHHHTTSBGGGGCSGGGHHHHHHHHHH
T ss_pred HHHHHHc--cCHHHHcCCcHHHhcCchhhHHHHHHHHH
Confidence 4688999 77999999999999999988777777653
No 12
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.58 E-value=0.55 Score=25.90 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=26.6
Q ss_pred EEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEE
Q psy17809 154 YYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYV 191 (294)
Q Consensus 154 ~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~v 191 (294)
.+++..++|.++|+++....+.+ .+.+...++++..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 39 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRD-EDGEVEGILGVVRD 39 (43)
T ss_pred EEEEEecCCCEEEEEEEeEEEEC-CCCCEEEEEEEEEe
Confidence 46788899999999999888876 33444555665443
No 13
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=92.84 E-value=0.093 Score=39.71 Aligned_cols=66 Identities=26% Similarity=0.448 Sum_probs=45.9
Q ss_pred cCceEEeeccccceeeccc-------------e-----------eeEeeec-ceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLS-------------Q-----------WQVINKG-QVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys-------------H-----------~~LL~KG-Q~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++|+||.+.+..++||. | .+.+..+ ......+++..++|+.+|++..+..+++
T Consensus 19 ~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 98 (113)
T PF00989_consen 19 EDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRFRLRDGRPRWVEVRASPVRD 98 (113)
T ss_dssp TTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEEEETTSCEEEEEEEEEEEEE
T ss_pred CcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEEEecCCcEEEEEEEEEEEEe
Confidence 7999999999999999991 1 0112222 2344456677789999999999999987
Q ss_pred CCCCCcCcEEEE
Q psy17809 177 SKNADEQNIICV 188 (294)
Q Consensus 177 ~kn~~~e~IVcv 188 (294)
.. .+..+++|+
T Consensus 99 ~~-~~~~~~~~~ 109 (113)
T PF00989_consen 99 ED-GQIIGILVI 109 (113)
T ss_dssp TT-EEEEEEEEE
T ss_pred CC-CCEEEEEEE
Confidence 43 233366665
No 14
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=91.73 E-value=0.069 Score=39.80 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred chhhhhhCCcceeeeecCCc----cccccCcccHHHHHHHhcC
Q psy17809 2 ELFEQHQGTHILQVEMTGSS----VFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqS----VfD~IHP~Dh~E~reQL~~ 40 (294)
+.|...|| +...|+ |.. ++++|||+|++.+.+.+..
T Consensus 6 ~~~~~i~G--~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~ 45 (91)
T PF08447_consen 6 DNFYEIFG--YSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQ 45 (91)
T ss_dssp THHHHHHT--S-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHH
T ss_pred HHHHHHhC--CCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHH
Confidence 45778899 668888 777 9999999999999998874
No 15
>PRK09776 putative diguanylate cyclase; Provisional
Probab=90.19 E-value=0.53 Score=50.80 Aligned_cols=71 Identities=8% Similarity=0.179 Sum_probs=52.5
Q ss_pred cCceEEeeccccceeeccceee-------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ-------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~-------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.++++++++.+...++||...+ .+..++....-||+..++| +.|+......+++
T Consensus 428 ~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG-~~w~~~~~~~~~d 506 (1092)
T PRK09776 428 LKPNIISWDKRMFELYEIPPHIKPTWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRIVVKDG-VRHIRALANRVLN 506 (1092)
T ss_pred cCCCeEeeCHHHHHHhCCCcccCCCHHHHHHhcCHhHHHHHHHHHHHHHhcCCCeeEEEEEEcCCc-eEEEEEeeEEEEC
Confidence 7899999999999999993221 1223444456699999999 9999999988886
Q ss_pred CCCCCcCcEEEEeEEecC
Q psy17809 177 SKNADEQNIICVNYVISG 194 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~ 194 (294)
. ++++..++++..=|++
T Consensus 507 ~-~G~~~~~ig~~~DITe 523 (1092)
T PRK09776 507 K-DGEVERLLGINMDMTE 523 (1092)
T ss_pred C-CCCEEEEEeeeeehhH
Confidence 4 3556667777665553
No 16
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=90.18 E-value=0.54 Score=30.59 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=41.7
Q ss_pred cCceEEeeccccceeeccceeeE------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.+++++++......++||...++ +..+......+++..++|.++|+......+.+.
T Consensus 10 ~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (103)
T cd00130 10 LDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSLTPIRDE 89 (103)
T ss_pred CCCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEEEEEEEccCCCEEEEEEEEEEEecC
Confidence 57888889888888888821111 111223345578888899999998888777654
Q ss_pred CCCCcCcEEE
Q psy17809 178 KNADEQNIIC 187 (294)
Q Consensus 178 kn~~~e~IVc 187 (294)
. .+...+++
T Consensus 90 ~-~~~~~~~~ 98 (103)
T cd00130 90 G-GEVIGLLG 98 (103)
T ss_pred C-CCEEEEEE
Confidence 3 23334444
No 17
>KOG3558|consensus
Probab=87.39 E-value=0.17 Score=53.39 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=30.7
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
+-|.+++| +.-.||+|.|+|+|||+.|-+-|+.--
T Consensus 291 dRisdlm~--y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh 325 (768)
T KOG3558|consen 291 DRISDLMD--YEPEELVGRSCYEFVHALDSDRVRKSH 325 (768)
T ss_pred hhHHHHhc--CCHHHhhchhHHHhhhHhhhhHHHHHH
Confidence 45889999 559999999999999999999998753
No 18
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=85.75 E-value=1.6 Score=32.68 Aligned_cols=71 Identities=15% Similarity=0.339 Sum_probs=49.1
Q ss_pred cCceEEeeccccceeeccc------------------------eeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLS------------------------QWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys------------------------H~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++++++......++|+. .+.++..+......+.+.. +|+..|++...+-+++.
T Consensus 13 ~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Pi~~~ 91 (110)
T PF08448_consen 13 PDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEERWFEVSISPIFDE 91 (110)
T ss_dssp TTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEEEEEEEEEEEECT
T ss_pred CCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcEEEEEEEEEeEcC
Confidence 7899999999999999981 1123334444444454444 99999999999999875
Q ss_pred CCCCcCcEEEEeEEecC
Q psy17809 178 KNADEQNIICVNYVISG 194 (294)
Q Consensus 178 kn~~~e~IVcvn~vlS~ 194 (294)
.+. ...++|+-+=|++
T Consensus 92 ~g~-~~g~~~~~~DiT~ 107 (110)
T PF08448_consen 92 DGE-VVGVLVIIRDITE 107 (110)
T ss_dssp TTC-EEEEEEEEEEECC
T ss_pred CCC-EEEEEEEEEECch
Confidence 544 6777777655543
No 19
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=80.11 E-value=0.78 Score=29.79 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=29.8
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.+...+| +.+.+++|.++++++|++|...+.+.+..
T Consensus 20 ~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (103)
T cd00130 20 AAEQLLG--YSPEELIGKSLLDLIHPEDREELRERLEN 55 (103)
T ss_pred HHHHHhC--CCHHHHcCccHHHhcCCccchHHHHHHHH
Confidence 3566788 55889999999999999999888877753
No 20
>PRK13559 hypothetical protein; Provisional
Probab=79.11 E-value=3.4 Score=38.73 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=46.9
Q ss_pred CceEEeeccccceeeccceee------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQWQ------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~~------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|++++++.+.+..++||...+ .+..+.....-++...++|.++|+......+++..
T Consensus 65 ~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~ 144 (361)
T PRK13559 65 DLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVELLNYRKDGEPFWNALHLGPVYGED 144 (361)
T ss_pred CCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEEEEEEcCC
Confidence 678999999999999992211 12233334445677789999999999888887633
Q ss_pred CCCcCcEEEEeEEec
Q psy17809 179 NADEQNIICVNYVIS 193 (294)
Q Consensus 179 n~~~e~IVcvn~vlS 193 (294)
.+...++++..=++
T Consensus 145 -G~~~~~v~~~~DIT 158 (361)
T PRK13559 145 -GRLLYFFGSQWDVT 158 (361)
T ss_pred -CCEEEeeeeeeehh
Confidence 33344555544344
No 21
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=78.30 E-value=1 Score=33.28 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=30.6
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
+.|++.+| +..-|++|.++.+|+++++..++.+.+..
T Consensus 18 ~~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 54 (104)
T PF13426_consen 18 PAFERLFG--YSREELIGKSISDFFPEEDRPEFEEQIER 54 (104)
T ss_dssp HHHHHHHT--S-HHHHTTSBGGGGCSTTSCHHHHHHHHH
T ss_pred HHHHHHHC--cCHHHHcCCCcccccCcccchhhHHHHHH
Confidence 36789999 77999999999999999888777777764
No 22
>KOG3753|consensus
Probab=77.22 E-value=1 Score=49.07 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=25.0
Q ss_pred hhCCcceeeeecCCccccccCcccHHHHHH
Q psy17809 7 HQGTHILQVEMTGSSVFDYIHQADHTELAE 36 (294)
Q Consensus 7 ~LG~h~~QvDl~GqSVfD~IHP~Dh~E~re 36 (294)
+|| ++-.||||.||.+|+||+|+.-|++
T Consensus 353 ~LG--yLPqDLIG~sil~f~H~eDr~vm~q 380 (1114)
T KOG3753|consen 353 LLG--YLPQDLIGTSILAFVHPEDRHVMVQ 380 (1114)
T ss_pred hhc--cCchhhhccchhhhhcCCchHHHHH
Confidence 799 8899999999999999999776654
No 23
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=75.27 E-value=5.2 Score=27.37 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=40.2
Q ss_pred cCceEEeeccccceeeccceeeE------------------------eeec-ceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV------------------------INKG-QVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L------------------------L~KG-Q~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.+++++++......++||....+ +..+ ......+++..++|.++|+......+.
T Consensus 21 ~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (124)
T TIGR00229 21 LEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIR- 99 (124)
T ss_pred CCCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeeeEcCCCCEEEEEEEEeehh-
Confidence 57888888888888888822111 1111 122334666788999999987776654
Q ss_pred CCCCCcCcEEEEe
Q psy17809 177 SKNADEQNIICVN 189 (294)
Q Consensus 177 ~kn~~~e~IVcvn 189 (294)
.+.....++++.
T Consensus 100 -~~~~~~~~~~~~ 111 (124)
T TIGR00229 100 -TNGGELGVVGIV 111 (124)
T ss_pred -hCCCeeEEEEEe
Confidence 334444555543
No 24
>PRK13558 bacterio-opsin activator; Provisional
Probab=73.00 E-value=5.1 Score=41.27 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=49.7
Q ss_pred cCceEEeeccccceeeccceeeE------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++++|+...+..++||...++ +..+.....-+|+..++|.+.|+...+..+++.
T Consensus 169 ~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~ 248 (665)
T PRK13558 169 PDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGSTFWNQVDIAPIRDE 248 (665)
T ss_pred CCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCCEEEEEEEEEEEECC
Confidence 47899999999999999932211 123344455688999999999999988888763
Q ss_pred CCCCcCcEEEEeEEec
Q psy17809 178 KNADEQNIICVNYVIS 193 (294)
Q Consensus 178 kn~~~e~IVcvn~vlS 193 (294)
. .+...++++..=|+
T Consensus 249 ~-G~~~~~vgi~~DIT 263 (665)
T PRK13558 249 D-GTVTHYVGFQTDVT 263 (665)
T ss_pred C-CCEEEEEEEEEeCc
Confidence 3 34455666555444
No 25
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=68.65 E-value=5.7 Score=41.34 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=49.3
Q ss_pred ccCceEEeeccccceeeccceee-------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 121 GSDGRFLYISETVSIYLGLSQWQ-------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGysH~~-------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
-.|++++++......++||...+ .+.++.....-||+..++|.+.|+......++
T Consensus 153 d~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~v~ 232 (799)
T PRK11359 153 DPERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVY 232 (799)
T ss_pred cCCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEeeeeeee
Confidence 37899999999999999992111 11222233345889999999999998888887
Q ss_pred cCCCCCcCcEEEEeEEec
Q psy17809 176 SSKNADEQNIICVNYVIS 193 (294)
Q Consensus 176 n~kn~~~e~IVcvn~vlS 193 (294)
+.. .+...++.+..=++
T Consensus 233 d~~-g~~~~~~~~~~DIT 249 (799)
T PRK11359 233 DVL-AHLQNLVMTFSDIT 249 (799)
T ss_pred cCC-CceeEEEEEeehhh
Confidence 643 34455565544444
No 26
>PRK13557 histidine kinase; Provisional
Probab=66.08 E-value=6.1 Score=38.53 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=44.8
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++++|+...+..++||+..+++ ..+.....-++...|+|..+|+......+++.
T Consensus 51 ~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~~ 130 (540)
T PRK13557 51 PDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEILNYRKDGSSFWNALFVSPVYND 130 (540)
T ss_pred CCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEEEEEeCCCCEEEEEEEEEEeECC
Confidence 478999999999999999322221 12222333467778999999999998888864
Q ss_pred CCCCcCcEEEE
Q psy17809 178 KNADEQNIICV 188 (294)
Q Consensus 178 kn~~~e~IVcv 188 (294)
. .+.-.++.+
T Consensus 131 ~-g~~~~~~~~ 140 (540)
T PRK13557 131 A-GDLVYFFGS 140 (540)
T ss_pred C-CCEEEEEEE
Confidence 3 333444444
No 27
>PRK09776 putative diguanylate cyclase; Provisional
Probab=64.59 E-value=5.9 Score=42.85 Aligned_cols=67 Identities=19% Similarity=0.418 Sum_probs=47.6
Q ss_pred ccCceEEeeccccceeeccceeeEee-----------------------ec--ceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 121 GSDGRFLYISETVSIYLGLSQWQVIN-----------------------KG--QVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGysH~~LL~-----------------------KG--Q~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
-.|++++++.+....++||...+++. .| ......+|+..|+|.++|+......+.
T Consensus 300 d~dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~ 379 (1092)
T PRK09776 300 GTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEKRYYRRDGEVVWALLAVSLVR 379 (1092)
T ss_pred cCCCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeeeEEEcCCCCEEEEEEEEEEEE
Confidence 37999999999999999993222110 11 123446899999999999999998888
Q ss_pred cCCCCCcCcEEEE
Q psy17809 176 SSKNADEQNIICV 188 (294)
Q Consensus 176 n~kn~~~e~IVcv 188 (294)
+.. .++.+++++
T Consensus 380 ~~~-g~~~~~i~~ 391 (1092)
T PRK09776 380 DTD-GTPLYFIAQ 391 (1092)
T ss_pred CCC-CCEeeehhh
Confidence 654 444455543
No 28
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=63.46 E-value=3.7 Score=40.16 Aligned_cols=35 Identities=9% Similarity=-0.061 Sum_probs=30.3
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++..+| +.+.||+|..+.|++||+|++++.+.|.
T Consensus 24 ~~~~~~g--~~~~el~G~~~~~~~~~~~~~~~~~~~~ 58 (442)
T TIGR02040 24 NPHHPSF--EQLSEWEGRRWEEIVTAESVEKFELRLS 58 (442)
T ss_pred CCCcccc--cccccCCCCcHhHhhCcchHHHHHHHHH
Confidence 4577889 5699999999999999999999888774
No 29
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=62.96 E-value=10 Score=37.12 Aligned_cols=171 Identities=18% Similarity=0.052 Sum_probs=91.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSSS 82 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~~ 82 (294)
.++..+| +...+++|.++.+++||+|.+.+++.|....... ...+ .......+. . ...+...+ .
T Consensus 162 a~~~l~G--~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~--~~~~~~~~~--~--~~~~~~~~------~ 225 (442)
T TIGR02040 162 AAAALLG--GVGQSLVGRAFPQEFEGRRREELMLTLRNVRATG--SAAP--VRILLRRSQ--K--RLLVVVSV------F 225 (442)
T ss_pred HHHHHhC--cCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcC--CCcc--eEEEEcCCC--e--EEEEEEEE------E
Confidence 4677889 6788999999999999999999988875432111 0000 000000000 0 00000000 0
Q ss_pred CCCCCcceeeeccccccCCcc-cccCC-Cceee-e----eeEEeeccCceEEeeccccceeeccce-eeEe---------
Q psy17809 83 YKGCDRSFCIRMKSTLTKRGC-HFKSS-GYRSL-D----GFAFALGSDGRFLYISETVSIYLGLSQ-WQVI--------- 145 (294)
Q Consensus 83 ~~~~~RsF~cRMKc~Lt~Rg~-~lkss-gyKVi-H----G~aialPlD~kf~~~D~Rvs~~LGysH-~~LL--------- 145 (294)
.....+.|++++.- ++.+.. ..+.. .|+.+ . |+.+ +-.||++++|.+....++||.. .+++
T Consensus 226 ~~~~~~~~l~~~~d-it~~~~~e~~~~~~~~~l~e~~~d~I~v-~D~~G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~ 303 (442)
T TIGR02040 226 RQDGESLFLCQLSP-AGATQPVGDELSENLARLYHEAPDAIVF-SDADGTIRGANEAFLELTDSSSLEAVRGRTLDRWLG 303 (442)
T ss_pred EeCCceEEEEEEcc-cchhhhhhHHHHHHHHHHHHhCCceEEE-EcCCCcEEehhHHHHHHhCCCChHHHcCCCHHHHhC
Confidence 01123456665542 222211 00000 12211 1 2322 2268999999999999999942 2222
Q ss_pred --------------eecceeeeEEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecC
Q psy17809 146 --------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194 (294)
Q Consensus 146 --------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~ 194 (294)
..|.....-+++..|+|..+|+...+..+.+ .....++++-+=|++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~ve~s~~~i~~---~~~~~~~~v~rDITe 363 (442)
T TIGR02040 304 RGGVDLRVLLSNVRRTGQVRLYATTLTGEFGAQTEVEISAAWVDQ---GERPLIVLVIRDISR 363 (442)
T ss_pred CCcccHHHHHHHHhhcCceEEEEEEEEcCCCCEEEEEEEEEEecc---CCceEEEEEEecchh
Confidence 1233333346888999999999999988863 223456666444443
No 30
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=60.69 E-value=4.6 Score=24.08 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=26.2
Q ss_pred hhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 4 FEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 4 ~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
+...+| +...++.|.++.+++++.|...+.+++.
T Consensus 30 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (67)
T smart00091 30 AEELLG--YSPEELIGKSLLELIHPEDREEVQEALQ 63 (67)
T ss_pred HHHHhC--CCHHHHcCCcHHHhcCcccHHHHHHHHH
Confidence 345566 4466788999999999999988877664
No 31
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=59.46 E-value=4.3 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.7
Q ss_pred hhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCC
Q psy17809 4 FEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLG 41 (294)
Q Consensus 4 ~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~ 41 (294)
+++.+| ..-.+++|++++|++++++.+++..++.-.
T Consensus 24 ~~~~~~--~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 59 (110)
T PF08448_consen 24 AAELFG--VSPEELIGRSLFDLLPPEDREEFQAALRRA 59 (110)
T ss_dssp HHHHHT--STHHHHTTSBHHHHSCCGCHHHHHHHHHHH
T ss_pred HHHHhC--CCHHHHhhccchhccccchhhhhHHHHHHh
Confidence 456788 568999999999999999999999888743
No 32
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=58.67 E-value=6.8 Score=37.35 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=45.7
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.+++++|+.+++..++||...+++ ..++.....++...++|.+.|+......+.+.
T Consensus 22 ~~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 101 (494)
T TIGR02938 22 LKANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLNRRKDGELYLAELTVAPVLNE 101 (494)
T ss_pred CCCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeeccCCCccchhhheeeEEEECC
Confidence 678999999999999999332222 11222334466788999999998887777653
Q ss_pred CCCCcCcEEEEeE
Q psy17809 178 KNADEQNIICVNY 190 (294)
Q Consensus 178 kn~~~e~IVcvn~ 190 (294)
+.+...++++-.
T Consensus 102 -~g~~~~~~~~~~ 113 (494)
T TIGR02938 102 -AGETTHFLGMHR 113 (494)
T ss_pred -CCCEEEEEEehh
Confidence 444555565544
No 33
>PRK13560 hypothetical protein; Provisional
Probab=56.29 E-value=16 Score=37.60 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=44.5
Q ss_pred cCceEEeeccccceeeccceeeE------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEe-ec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVV-CS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv-~n 176 (294)
.|++|++|.+.+..++||...++ +..+.....-+++..++|.+.|+......+ +.
T Consensus 222 ~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~ 301 (807)
T PRK13560 222 EDAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVIFNHAEFD 301 (807)
T ss_pred CCCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEecceEEE
Confidence 78999999999999999932221 222333344578999999998765443222 22
Q ss_pred CCCCCcCcEEEEeEEec
Q psy17809 177 SKNADEQNIICVNYVIS 193 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS 193 (294)
..+.....++++-.=|+
T Consensus 302 ~~~g~~~g~~~~~~DIT 318 (807)
T PRK13560 302 DKENHCAGLVGAITDIS 318 (807)
T ss_pred cCCCCEEEEEEEEEech
Confidence 23344445555544343
No 34
>PRK10060 RNase II stability modulator; Provisional
Probab=48.40 E-value=23 Score=37.17 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=45.5
Q ss_pred cCceEEeeccccceeeccceeeE-------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV-------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L-------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++++++.+....++||.-.++ +..|.....-+++..|+|.++|+.....+..
T Consensus 129 ~~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~~~~- 207 (663)
T PRK10060 129 SRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKTRKGQRLFLFRNKFVHS- 207 (663)
T ss_pred CCCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEEEeCCCCEEEEEeeeEEEc-
Confidence 68999999999999999932221 2233334445788999999999876554432
Q ss_pred CCCCCcCcEEEEeEEec
Q psy17809 177 SKNADEQNIICVNYVIS 193 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS 193 (294)
..+....++||+-+=++
T Consensus 208 ~~g~~~~~~i~~~~DIT 224 (663)
T PRK10060 208 GSGKNEIFLICSGTDIT 224 (663)
T ss_pred CCCCceEEEEEEEEech
Confidence 22222244666544444
No 35
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=43.31 E-value=13 Score=25.22 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=28.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+.+.+| +...+++|.++.+++++.+...+...+.
T Consensus 31 ~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (124)
T TIGR00229 31 AFEEIFG--YSAEELIGRNVLELIPEEDREEVRERIE 65 (124)
T ss_pred HHHHHhC--CChHHhcCcchhhhcChhhhHHHHHHHH
Confidence 3567788 5578899999999999999888876664
No 36
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=41.66 E-value=33 Score=36.14 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=51.0
Q ss_pred eccCceEEeeccccceeeccceee------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 120 LGSDGRFLYISETVSIYLGLSQWQ------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 120 lPlD~kf~~~D~Rvs~~LGysH~~------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
+-.|+++++|......++||...+ ++..+.....-+++..++|...|+......++
T Consensus 171 ~D~~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~pi~ 250 (779)
T PRK11091 171 RNEDGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFY 250 (779)
T ss_pred ECCCCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCCEEEEEEEeeeEE
Confidence 347899999999999999993221 22233344445677889999999999888887
Q ss_pred cCCCCCcCcEEEEeEEecC
Q psy17809 176 SSKNADEQNIICVNYVISG 194 (294)
Q Consensus 176 n~kn~~~e~IVcvn~vlS~ 194 (294)
+. +++...+|++-+=|++
T Consensus 251 ~~-~g~~~g~v~~~~DITe 268 (779)
T PRK11091 251 DR-VGKRHGLMGFGRDITE 268 (779)
T ss_pred cC-CCCEEEEEEEEeehhH
Confidence 64 3444556666554553
No 37
>PF12860 PAS_7: PAS fold
Probab=25.96 E-value=1.2e+02 Score=23.54 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=13.8
Q ss_pred cCceEEeeccccceeecc
Q psy17809 122 SDGRFLYISETVSIYLGL 139 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGy 139 (294)
-|+++++|.++...++|+
T Consensus 13 ~~~rl~~~N~~~~~l~~~ 30 (115)
T PF12860_consen 13 SDGRLVFWNQRFRELFGL 30 (115)
T ss_pred CCCeEEeEcHHHHHHhCC
Confidence 567778888777777777
No 38
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.49 E-value=1e+02 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.384 Sum_probs=36.2
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecc----eeeeEEEeeeeCCcEEEEEEEEEE
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQ----VLTHYYRLMNKNGGYTWVQSCATV 173 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ----~~t~~YR~l~K~G~wVWlqT~~~v 173 (294)
.|++++++.+....++||+..+++ ..+. ....-+|+..|+|.++|+......
T Consensus 30 ~~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~ 109 (799)
T PRK11359 30 ENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSK 109 (799)
T ss_pred CCCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCccccccceeeEEecCCcCEEEEEEEeee
Confidence 689999999999999999222111 1111 112247889999999999776544
Q ss_pred e
Q psy17809 174 V 174 (294)
Q Consensus 174 v 174 (294)
+
T Consensus 110 ~ 110 (799)
T PRK11359 110 V 110 (799)
T ss_pred e
Confidence 3
No 39
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=23.14 E-value=2.4e+02 Score=20.82 Aligned_cols=54 Identities=31% Similarity=0.493 Sum_probs=37.4
Q ss_pred cCceEEeeccccceeeccceee---------------------E-----eeecceeeeEEEeeeeCCcE-EEEEEEEEEe
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ---------------------V-----INKGQVLTHYYRLMNKNGGY-TWVQSCATVV 174 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~---------------------L-----L~KGQ~~t~~YR~l~K~G~w-VWlqT~~~vv 174 (294)
.|+++.+++..+..++||.... . .........-+++..++|.+ .|+.......
T Consensus 130 ~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (232)
T COG2202 130 EDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPV 209 (232)
T ss_pred CCCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEecCCCEEEEEEeeeeEe
Confidence 5799999999999999992110 0 01112344568999999995 8887777665
Q ss_pred e
Q psy17809 175 C 175 (294)
Q Consensus 175 ~ 175 (294)
.
T Consensus 210 ~ 210 (232)
T COG2202 210 R 210 (232)
T ss_pred c
Confidence 4
No 40
>PRK13560 hypothetical protein; Provisional
Probab=22.06 E-value=1.1e+02 Score=31.65 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=31.8
Q ss_pred eEEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecC
Q psy17809 153 HYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISG 194 (294)
Q Consensus 153 ~~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~ 194 (294)
.-||+..++|.+.|+......++|. .+++..++++..=|++
T Consensus 550 ~e~r~~~~dG~~~w~~~~~~~~~d~-~G~~~~~~g~~~DITe 590 (807)
T PRK13560 550 QEYRILGKGGAVCWIDDQSAAERDE-EGQISHFEGIVIDISE 590 (807)
T ss_pred eEEEEEcCCCCEEEEEecceeeeCC-CCCEEEEEEEEechHH
Confidence 4599999999999999999888874 4556667777665553
No 41
>KOG3559|consensus
Probab=21.93 E-value=85 Score=32.15 Aligned_cols=27 Identities=59% Similarity=1.073 Sum_probs=23.2
Q ss_pred eeeeEEeeccCceEEeeccccceeecc
Q psy17809 113 LDGFAFALGSDGRFLYISETVSIYLGL 139 (294)
Q Consensus 113 iHG~aialPlD~kf~~~D~Rvs~~LGy 139 (294)
+.||.+.+-.|||+.|+.+.++.+||.
T Consensus 88 LDGF~fvva~dGkimYISETaSvhLGL 114 (598)
T KOG3559|consen 88 LDGFIFVVAPDGKIMYISETASVHLGL 114 (598)
T ss_pred hcceEEEEeCCCCEEEEecceeeeecc
Confidence 337766666899999999999999999
Done!