Query psy17809
Match_columns 294
No_of_seqs 160 out of 440
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:36:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dj2_A Period circadian protei 100.0 1.9E-34 6.4E-39 272.5 10.4 172 2-208 54-292 (320)
2 4dj3_A Period circadian protei 100.0 2E-33 6.8E-38 265.2 12.0 170 2-208 54-291 (317)
3 3gdi_A Period circadian protei 100.0 2.8E-33 9.7E-38 263.2 12.8 172 2-208 43-281 (309)
4 4f3l_B BMAL1B; BHLH, PAS, circ 100.0 3.8E-31 1.3E-35 253.5 9.5 179 2-195 114-384 (387)
5 3rty_A Period circadian protei 100.0 1.6E-29 5.4E-34 240.4 9.4 161 2-200 21-269 (339)
6 4f3l_A Mclock, circadian locom 99.9 5.3E-26 1.8E-30 215.2 8.6 163 2-198 113-359 (361)
7 1oj5_A Steroid receptor coacti 99.8 5.9E-21 2E-25 160.3 5.1 77 122-198 15-118 (132)
8 3f1p_A Endothelial PAS domain- 98.8 2.3E-09 7.9E-14 81.1 4.0 77 121-197 16-116 (117)
9 2vlg_A Sporulation kinase A; h 98.8 2E-08 6.8E-13 79.5 7.8 36 2-39 26-61 (111)
10 3f1p_B ARYL hydrocarbon recept 98.8 1.1E-08 3.8E-13 77.9 6.1 75 122-196 20-119 (121)
11 2kdk_A ARYL hydrocarbon recept 98.6 4.4E-08 1.5E-12 73.9 5.2 74 122-195 21-119 (121)
12 3h9w_A Diguanylate cyclase wit 97.8 2.4E-05 8.4E-10 58.5 5.0 73 122-195 12-109 (115)
13 3mr0_A Sensory box histidine k 96.7 0.0011 3.9E-08 51.8 3.5 72 122-194 27-124 (142)
14 3icy_A Sensor protein; sensory 96.6 0.004 1.4E-07 45.2 6.0 66 122-188 22-113 (118)
15 3nja_A Probable ggdef family p 96.3 0.0048 1.6E-07 44.8 4.6 71 122-193 25-121 (125)
16 3f1p_B ARYL hydrocarbon recept 96.2 0.0024 8.3E-08 47.8 2.6 36 3-40 30-65 (121)
17 3f1p_A Endothelial PAS domain- 96.1 0.0022 7.4E-08 47.6 2.0 36 3-40 27-62 (117)
18 1n9l_A PHOT-LOV1, putative blu 96.0 0.0077 2.6E-07 45.0 4.6 68 122-190 14-105 (109)
19 4eet_B Phototropin-2; LOV, blu 95.9 0.0097 3.3E-07 42.5 4.7 69 123-192 19-111 (115)
20 4hia_A LOV protein; PAS, HTH, 95.4 0.017 5.8E-07 45.9 4.8 71 124-195 30-124 (176)
21 2gj3_A Nitrogen fixation regul 95.4 0.02 6.7E-07 42.9 4.9 71 122-193 23-117 (120)
22 3mqq_A Transcriptional regulat 95.4 0.015 5.2E-07 43.2 4.2 70 122-193 20-114 (120)
23 4dj2_A Period circadian protei 95.2 0.0064 2.2E-07 57.0 2.0 36 3-40 194-229 (320)
24 3gdi_A Period circadian protei 95.0 0.0054 1.9E-07 57.1 1.0 35 3-39 183-217 (309)
25 2kdk_A ARYL hydrocarbon recept 95.0 0.011 3.7E-07 43.8 2.3 35 3-39 31-65 (121)
26 3ue6_A Aureochrome1; PAS/LOV d 95.0 0.018 6E-07 44.6 3.7 66 123-189 57-146 (166)
27 3rty_A Period circadian protei 95.0 0.0083 2.8E-07 56.6 2.0 35 3-39 172-206 (339)
28 4dj3_A Period circadian protei 94.9 0.0058 2E-07 57.2 0.8 35 3-39 192-226 (317)
29 2pr5_A Blue-light photorecepto 94.9 0.017 5.8E-07 44.0 3.3 68 123-193 21-112 (132)
30 3t50_A Blue-light-activated hi 94.7 0.026 8.8E-07 41.7 3.9 69 123-192 19-111 (128)
31 3ewk_A Sensor protein; PAS dom 94.7 0.036 1.2E-06 46.9 5.1 74 122-196 7-104 (227)
32 3eeh_A Putative light and redo 94.6 0.041 1.4E-06 39.2 4.4 66 122-188 29-120 (125)
33 4f3l_B BMAL1B; BHLH, PAS, circ 94.4 0.01 3.5E-07 56.3 1.2 36 3-40 296-331 (387)
34 3lyx_A Sensory BOX/ggdef domai 94.2 0.058 2E-06 38.0 4.6 71 122-193 25-119 (124)
35 3p7n_A Sensor histidine kinase 94.2 0.042 1.4E-06 47.2 4.5 72 123-195 85-180 (258)
36 2wkq_A NPH1-1, RAS-related C3 94.2 0.048 1.6E-06 48.6 5.0 72 123-195 33-128 (332)
37 4f3l_A Mclock, circadian locom 94.2 0.013 4.3E-07 54.9 1.2 35 3-39 269-303 (361)
38 2v0u_A NPH1-1, LOV2; kinase, t 93.6 0.11 3.6E-06 37.9 5.1 72 123-195 24-119 (146)
39 3d72_A Vivid PAS protein VVD; 92.9 0.1 3.5E-06 39.8 4.2 66 122-188 46-146 (149)
40 1byw_A Protein (human ERG pota 92.8 0.14 4.8E-06 35.1 4.6 65 123-188 13-103 (110)
41 3luq_A Sensor protein; PAS, hi 92.8 0.15 5.3E-06 36.0 4.9 66 122-188 21-109 (114)
42 2z6d_A Phototropin-2; PAS-fold 92.8 0.15 5.1E-06 36.0 4.7 66 122-188 27-116 (130)
43 3olo_A Two-component sensor hi 92.4 0.14 4.6E-06 36.8 4.2 55 122-176 31-104 (118)
44 2r78_A Sensor protein; sensory 92.2 0.097 3.3E-06 39.2 3.3 54 122-175 29-105 (117)
45 2vlg_A Sporulation kinase A; h 92.1 0.039 1.3E-06 42.8 0.8 14 84-97 95-108 (111)
46 3sw1_A Sensory box protein; li 91.5 0.14 4.9E-06 39.3 3.6 71 122-193 43-140 (162)
47 3icy_A Sensor protein; sensory 90.9 0.13 4.3E-06 37.0 2.6 36 3-40 32-69 (118)
48 2l0w_A Potassium voltage-gated 90.6 0.41 1.4E-05 34.4 5.1 65 123-188 41-131 (138)
49 3h9w_A Diguanylate cyclase wit 89.3 0.089 3E-06 38.6 0.6 36 3-40 22-58 (115)
50 3mjq_A Uncharacterized protein 88.6 0.56 1.9E-05 33.7 4.6 69 122-193 17-108 (126)
51 3ewk_A Sensor protein; PAS dom 88.4 0.39 1.3E-05 40.4 4.1 66 122-188 129-224 (227)
52 3mfx_A Sensory BOX/ggdef famil 88.4 0.84 2.9E-05 35.9 5.8 62 122-186 25-117 (129)
53 4eho_A Bacteriophytochrome, PA 87.2 0.12 4.1E-06 52.2 0.1 71 121-192 535-628 (635)
54 1oj5_A Steroid receptor coacti 86.7 0.064 2.2E-06 44.7 -1.8 24 15-38 36-61 (132)
55 3bwl_A Sensor protein; structu 85.0 1.7 5.8E-05 31.7 5.6 54 121-174 34-110 (126)
56 3mr0_A Sensory box histidine k 84.3 0.46 1.6E-05 36.5 2.2 36 3-40 37-74 (142)
57 3nja_A Probable ggdef family p 84.2 0.26 8.9E-06 35.3 0.7 35 3-39 35-71 (125)
58 2vv6_A FIXL, sensor protein FI 79.3 1.7 5.8E-05 31.8 3.6 69 122-193 11-107 (119)
59 1d06_A Nitrogen fixation regul 78.4 1.9 6.5E-05 32.1 3.7 55 122-176 34-116 (130)
60 1ll8_A PAS kinase; PAS domain, 75.8 0.94 3.2E-05 32.9 1.3 31 3-35 27-57 (114)
61 3eeh_A Putative light and redo 74.8 0.77 2.6E-05 32.2 0.6 35 3-39 40-76 (125)
62 3b33_A Sensor protein; structu 72.9 2.8 9.6E-05 30.0 3.3 54 122-176 25-101 (115)
63 1ll8_A PAS kinase; PAS domain, 72.7 1.7 6E-05 31.4 2.1 54 122-175 16-98 (114)
64 3mjq_A Uncharacterized protein 71.9 0.78 2.7E-05 32.9 -0.0 35 3-39 27-61 (126)
65 1d06_A Nitrogen fixation regul 70.9 1.6 5.6E-05 32.5 1.6 34 3-38 44-77 (130)
66 4eet_B Phototropin-2; LOV, blu 68.2 1.6 5.6E-05 30.4 1.0 35 3-39 28-62 (115)
67 2vv6_A FIXL, sensor protein FI 66.2 2.4 8.1E-05 30.9 1.6 34 3-38 21-54 (119)
68 1v9y_A Heme PAS sensor protein 63.3 3.4 0.00012 31.0 2.0 54 121-174 57-138 (167)
69 3luq_A Sensor protein; PAS, hi 63.1 2.2 7.7E-05 29.7 0.9 34 3-39 31-64 (114)
70 3t50_A Blue-light-activated hi 61.1 2.6 9E-05 30.4 1.0 35 3-39 28-62 (128)
71 3k3c_A Protein RV1364C/MT1410; 60.2 7 0.00024 29.6 3.4 72 122-194 36-134 (158)
72 2gj3_A Nitrogen fixation regul 59.5 3.4 0.00012 30.2 1.4 32 3-36 33-64 (120)
73 3mfx_A Sensory BOX/ggdef famil 56.6 1.2 4.1E-05 35.0 -1.7 33 3-37 35-67 (129)
74 4hia_A LOV protein; PAS, HTH, 53.2 4.1 0.00014 31.6 1.0 35 3-39 38-72 (176)
75 3a0s_A Sensor protein; PAS-fol 52.8 3.8 0.00013 26.9 0.6 18 122-139 10-27 (96)
76 2z6d_A Phototropin-2; PAS-fold 50.1 5.2 0.00018 27.6 1.0 35 3-39 37-71 (130)
77 3ue6_A Aureochrome1; PAS/LOV d 48.8 5.5 0.00019 30.1 1.0 35 3-39 66-100 (166)
78 2v0u_A NPH1-1, LOV2; kinase, t 48.0 5.8 0.0002 28.2 1.0 35 3-39 33-67 (146)
79 3d72_A Vivid PAS protein VVD; 47.0 5.9 0.0002 29.6 0.9 26 3-30 56-81 (149)
80 3kx0_X Uncharacterized protein 46.4 12 0.00041 29.8 2.8 71 122-193 56-153 (185)
81 3p7n_A Sensor histidine kinase 44.6 8.3 0.00029 32.5 1.6 35 3-39 94-128 (258)
82 2pr5_A Blue-light photorecepto 44.1 7.2 0.00025 28.9 1.0 34 3-38 30-63 (132)
83 3lyx_A Sensory BOX/ggdef domai 43.1 11 0.00038 25.7 1.8 35 3-39 35-69 (124)
84 2wkq_A NPH1-1, RAS-related C3 43.0 7.2 0.00025 34.2 1.0 34 3-38 42-75 (332)
85 3bwl_A Sensor protein; structu 41.2 13 0.00044 26.8 2.0 32 3-38 45-78 (126)
86 3fc7_A HTR-like protein, senso 39.8 10 0.00035 26.9 1.2 30 3-34 47-76 (125)
87 3fg8_A Uncharacterized protein 37.5 5.5 0.00019 29.3 -0.6 34 3-38 40-73 (118)
88 3k3c_A Protein RV1364C/MT1410; 37.5 7.3 0.00025 29.5 0.1 32 3-38 46-77 (158)
89 2ool_A Sensor protein; bacteri 37.5 14 0.00048 34.7 2.1 37 2-40 60-96 (337)
90 1n9l_A PHOT-LOV1, putative blu 36.4 11 0.00039 27.2 1.0 28 3-32 24-51 (109)
91 1v9y_A Heme PAS sensor protein 36.4 11 0.00038 28.1 1.0 35 3-39 68-102 (167)
92 3sw1_A Sensory box protein; li 33.1 10 0.00034 28.5 0.2 35 3-39 56-90 (162)
93 3mqq_A Transcriptional regulat 27.4 23 0.00077 25.4 1.4 33 3-37 30-63 (120)
94 3mxq_A Sensor protein; PSI2, M 27.0 17 0.00057 29.5 0.6 34 3-39 50-83 (152)
95 1nwz_A PYP, photoactive yellow 25.5 17 0.00059 29.3 0.4 26 4-31 46-71 (125)
96 1mzu_A PPR; photoactive yellow 24.1 19 0.00065 29.3 0.4 26 4-31 51-76 (129)
No 1
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=272.52 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=126.3
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
|.|+++|| +.|.||+|+|+||||||+||++|++||.... -|.. .++ + +. + +..
T Consensus 54 ~sv~~~Lg--~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~-------lp~~-----~~~----~--~~-~------~~~ 106 (320)
T 4dj2_A 54 EQAGVLLR--CKRDVFRGARFSELLAPQDVGVFYGSTTPSR-------LPTW-----GTG----T--SA-G------SGL 106 (320)
T ss_dssp THHHHHHT--SCSTTTTTSBGGGGBCHHHHHHHHHHCCTTT-------CCBT-----TC---------------------
T ss_pred cHHHHHhC--cCHHHHcCCcHHHhcCHHHHHHHHHhhcccC-------CCCc-----ccC----c--cc-c------ccc
Confidence 67899999 5599999999999999999999999998531 1100 000 0 00 0 001
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee--e-----------------eEEeec---------------------
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD--G-----------------FAFALG--------------------- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH--G-----------------~aialP--------------------- 121 (294)
.....+|+|||||||.++++ +..+|+++| | |+++.|
T Consensus 107 ~~~~~~rsF~CRmr~~l~k~----~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~i~~~~~~Fitrh 182 (320)
T 4dj2_A 107 KDFTQEKSVFCRIRGGPDRD----PGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIPPDKRIFTTRH 182 (320)
T ss_dssp -----CCCEEEEECCC-----------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSCCCGGGCEEEEEE
T ss_pred ccCCCceeEEEEEEEeccCC----CcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCccccccccCCCceEEEEe
Confidence 12367899999999998664 234677776 2 222221
Q ss_pred -cCceEEeeccccceeecc------------------------ceeeEee-eccee-eeEEEeeeeCCcEEEEEEEEEEe
Q psy17809 122 -SDGRFLYISETVSIYLGL------------------------SQWQVIN-KGQVL-THYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 122 -lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~-KGQ~~-t~~YR~l~K~G~wVWlqT~~~vv 174 (294)
+||+|+|||+++..+||| .|..+++ +|+.. +..|||++|+|+|||++|.|+++
T Consensus 183 ~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~ 262 (320)
T 4dj2_A 183 TPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGF 262 (320)
T ss_dssp CTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEECEEEEE
T ss_pred cCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEEEEEEE
Confidence 799999999999999999 3445665 67776 57899999999999999999999
Q ss_pred ecCCCCCcCcEEEEeEEecCccccceeccccccc
Q psy17809 175 CSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS~~E~~~~~l~~~Q~~ 208 (294)
+|||+++++||||+|+|+++++..+ ++|.+
T Consensus 263 ~np~s~~~e~II~~h~v~~gp~~~d----vf~~~ 292 (320)
T 4dj2_A 263 VHPWSRKVAFVLGRHKVRTAPLNED----VFTPP 292 (320)
T ss_dssp ECTTTCSEEEEEEEEEESSCCSSCC----CSSCC
T ss_pred ECCCCCCccEEEEEEEEccCCCCCC----cccCC
Confidence 9999999999999999999999876 56655
No 2
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=265.20 Aligned_cols=170 Identities=15% Similarity=0.069 Sum_probs=130.0
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
|.++++|| +.|.||+|+|+||||||+||++|++||... ..|..... ++.+++
T Consensus 54 ~~~~~~Lg--~~~~el~g~s~~d~ihp~D~~~f~~ql~~~-------~lP~~~~~-------------------~~~~~~ 105 (317)
T 4dj3_A 54 EQAALILN--SKRGFLKSVHFVDLLAPQDVRAFYAHTAPT-------QLPFWNNW-------------------TQRASQ 105 (317)
T ss_dssp TTHHHHTT--CCHHHHHTSBGGGGBCGGGHHHHHHHTCTT-------TCCCCC---------------------------
T ss_pred CHHHHHcC--CCHHHHcCCchhhhcChhhHHHHHHhhccc-------CCCCcCCC-------------------cccccc
Confidence 57899999 569999999999999999999999999421 11211000 000011
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee--e------------------eEEe-------ec-------------
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD--G------------------FAFA-------LG------------- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH--G------------------~aia-------lP------------- 121 (294)
.....+|+|||||||.. ..|+.+|+++| | ++++ +|
T Consensus 106 ~~~~~~rsF~CRmr~g~-----~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~~~~~~~Fitrh 180 (317)
T 4dj3_A 106 YECAPAKPFFCRICGGG-----DREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIPVDKRIFTTTH 180 (317)
T ss_dssp --CCCCCCEEEEECCCC-----CSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCCCGGGCEEEEEE
T ss_pred cCCCCCceEEEEEeCCC-----CCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCcccCCCceEEEe
Confidence 23468999999999953 34667899888 2 2222 11
Q ss_pred -cCceEEeeccccceeecc------------------------ceeeEeee-cce--eeeEEEeeeeCCcEEEEEEEEEE
Q psy17809 122 -SDGRFLYISETVSIYLGL------------------------SQWQVINK-GQV--LTHYYRLMNKNGGYTWVQSCATV 173 (294)
Q Consensus 122 -lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~K-GQ~--~t~~YR~l~K~G~wVWlqT~~~v 173 (294)
+||+|+|||+++..+||| .|..+++. ++. .+..|||++|+|+|||++|+|++
T Consensus 181 ~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~ 260 (317)
T 4dj3_A 181 TPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSS 260 (317)
T ss_dssp CTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEE
T ss_pred cCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEE
Confidence 799999999999999999 24455654 443 57899999999999999999999
Q ss_pred eecCCCCCcCcEEEEeEEecCccccceeccccccc
Q psy17809 174 VCSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208 (294)
Q Consensus 174 v~n~kn~~~e~IVcvn~vlS~~E~~~~~l~~~Q~~ 208 (294)
++|||+++++||||+|+|+++++..+ ++|.+
T Consensus 261 ~~np~s~~~e~II~~h~v~~~p~~~d----vf~~~ 291 (317)
T 4dj3_A 261 FVNPWSRKVSFIIGRHKVRTSPLNED----VFATR 291 (317)
T ss_dssp EECSSSCCEEEEEEEEEECCCCSSSC----TTCCC
T ss_pred EECCCCCcccEEEEEEEeccCCCCCC----cccCC
Confidence 99999999999999999999999875 56655
No 3
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=100.00 E-value=2.8e-33 Score=263.18 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=121.5
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
|.++++|| +.|.||+|+|+||||||+||++|++||.... .|..... .+ . +.+.+
T Consensus 43 ~s~~~~Lg--~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~-------lp~~~~~---~~---------~-----~~~~~ 96 (309)
T 3gdi_A 43 NQVASIFH--CKKDAFSDAKFVEFLAPHDVSVFHSYTTPYK-------LPPWSVC---SG---------L-----DSFTQ 96 (309)
T ss_dssp TTTTTTC---------CCSBGGGGBCTTTHHHHHHHTCTTS-------SCBCC---------------------------
T ss_pred CHHHHHcC--CCHHHHcCCchhhccCHhHHHHHHHhccccC-------CCCcccc---cC---------c-----ccccc
Confidence 57899999 5699999999999999999999999997421 1211100 00 0 00011
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee--e-----------------eEEeec---------------------
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD--G-----------------FAFALG--------------------- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH--G-----------------~aialP--------------------- 121 (294)
.+ ..+|+|||||||...+ -+..+|+++| | |+++.|
T Consensus 97 ~~-~~~rsF~CRmr~~~~~----~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~~~~~~~~Fitrh 171 (309)
T 3gdi_A 97 EC-MEEKSFFCRVSVGKHH----ENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTH 171 (309)
T ss_dssp -----CCCEEEEECCCC--------CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSCCCGGGCEEEEEE
T ss_pred cc-CCceeEEEEEEccccC----CCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCCcCCCCceEEEEe
Confidence 12 2589999999997432 2456788887 2 222221
Q ss_pred -cCceEEeeccccceeecc------------------------ceeeEee-ecceee-eEEEeeeeCCcEEEEEEEEEEe
Q psy17809 122 -SDGRFLYISETVSIYLGL------------------------SQWQVIN-KGQVLT-HYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 122 -lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~-KGQ~~t-~~YR~l~K~G~wVWlqT~~~vv 174 (294)
+||+|+|||+++..+||| .|+.+++ +|+..+ ..|||++|+|+|||++|.|+++
T Consensus 172 ~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~ 251 (309)
T 3gdi_A 172 TPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSF 251 (309)
T ss_dssp CTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEEEEEEEE
Confidence 799999999999999999 3445664 567666 6899999999999999999999
Q ss_pred ecCCCCCcCcEEEEeEEecCccccceeccccccc
Q psy17809 175 CSSKNADEQNIICVNYVISGREYENFIMDCCQLE 208 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS~~E~~~~~l~~~Q~~ 208 (294)
+|||+++++||||+|+|+++++..+ ++|.+
T Consensus 252 ~np~s~~~e~ii~~h~v~~gp~~~d----vf~~~ 281 (309)
T 3gdi_A 252 INPWSRKISFIIGRHKVRVGPLNED----VFAAP 281 (309)
T ss_dssp ECTTTCCEEEEEEEEEEEECCSSSC----TTSCC
T ss_pred ECCCCCcccEEEEEEEEccCCCCCC----cccCC
Confidence 9999999999999999999999885 66655
No 4
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.97 E-value=3.8e-31 Score=253.46 Aligned_cols=179 Identities=22% Similarity=0.349 Sum_probs=125.7
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
+.|+++|| +.|.||+|+|+||||||+|+++|+++|+.... .|..+..+..+|. .+.+..+...++
T Consensus 114 ~~~~~~lG--~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~------~p~~~~~~~~tg~-------~~~~e~~~~~~~ 178 (387)
T 4f3l_B 114 ESVFKILN--YSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDT------APRERLIDAKTGL-------PVKTDITPGPSR 178 (387)
T ss_dssp TTHHHHHS--CCHHHHTTSBGGGGBCGGGHHHHHHHHSCC---------------------------------------C
T ss_pred hhhHHHcC--CCHHHHCCCcHHHhcCCCCHHHHHHHhccccc------CccccccCcccCC-------ccCCCCCCcccc
Confidence 46899999 66999999999999999999999999997642 2333333322221 122233444556
Q ss_pred CCCCCCcceeeeccccccCCcc---------c---ccCCCceeee--e----------------------------eEEe
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGC---------H---FKSSGYRSLD--G----------------------------FAFA 119 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~---------~---lkssgyKViH--G----------------------------~aia 119 (294)
.+.+.+|+|||||||.+..++. + .+..+|+++| | ||++
T Consensus 179 ~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~lvai~ 258 (387)
T 4f3l_B 179 LCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIG 258 (387)
T ss_dssp CCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-------------------CCCEEEEEE
T ss_pred cccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccCCCcceEEEEEE
Confidence 6778999999999999864321 1 1567788887 2 2333
Q ss_pred ec-------------------------cCceEEeeccccceeecc------------------------ceeeEe-eecc
Q psy17809 120 LG-------------------------SDGRFLYISETVSIYLGL------------------------SQWQVI-NKGQ 149 (294)
Q Consensus 120 lP-------------------------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL-~KGQ 149 (294)
.+ +||+|+||++++..+||| .|+.++ .+++
T Consensus 259 r~~~~~~~~~~~~ei~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~ 338 (387)
T 4f3l_B 259 RLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREK 338 (387)
T ss_dssp EECCCSCCSCCCSSSCBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSC
T ss_pred ecccCCCCCCcccccccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCC
Confidence 11 699999999999999999 234455 4567
Q ss_pred eeeeEEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecCc
Q psy17809 150 VLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGR 195 (294)
Q Consensus 150 ~~t~~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~~ 195 (294)
..+..|||+.|+|+|+|+++.+++++|+|++++++|||+|+.|++.
T Consensus 339 ~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~R 384 (387)
T 4f3l_B 339 ITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLAN 384 (387)
T ss_dssp EECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC--
T ss_pred eeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchh
Confidence 7788999999999999999999999999999999999999999864
No 5
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.96 E-value=1.6e-29 Score=240.39 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=118.3
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
+.|+++|| +.|.||+|+|+||||||+|+++|+++|...++. |.+. +
T Consensus 21 ~~~~~~LG--y~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~------~~~~------~-------------------- 66 (339)
T 3rty_A 21 PSITDVLG--YPRDMWLGRSFIDFVHLKDRATFASQITTGIPI------AESR------G-------------------- 66 (339)
T ss_dssp TTHHHHHC--CCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCC------C------------------------------
T ss_pred hHHHHHcC--CCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCC------Cccc------c--------------------
Confidence 57899999 669999999999999999999999999975421 1000 0
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee------------------------------e-----eEEeec-----
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD------------------------------G-----FAFALG----- 121 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH------------------------------G-----~aialP----- 121 (294)
.....+|+|||||++.. +.|+++||+|++ | |++|.|
T Consensus 67 ~~~~~~rsffcR~~rr~----~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~ 142 (339)
T 3rty_A 67 SVPKDAKSTFCVMLRRY----RGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSY 142 (339)
T ss_dssp ------CCEEEEEEECC----C-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSC
T ss_pred CCCCCCceEEEEEEecc----CCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccc
Confidence 00135799999997532 122333333221 1 222222
Q ss_pred -------------------cCceEEeeccccceeecc------------------------ceeeEeeecce-----eee
Q psy17809 122 -------------------SDGRFLYISETVSIYLGL------------------------SQWQVINKGQV-----LTH 153 (294)
Q Consensus 122 -------------------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~KGQ~-----~t~ 153 (294)
+||+|+|||+++..+||| .|..++.+|+. .+.
T Consensus 143 ~~p~e~~~~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~ 222 (339)
T 3rty_A 143 KVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSK 222 (339)
T ss_dssp SSTTBBCCSSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCC
T ss_pred cccchhhccCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccce
Confidence 799999999999999999 24456677876 356
Q ss_pred EEEeeeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecCccccce
Q psy17809 154 YYRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYENF 200 (294)
Q Consensus 154 ~YR~l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~~E~~~~ 200 (294)
.|||++|+|+|||+++.|++++|+|++++++|||+|+|+++++..++
T Consensus 223 ~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~~dv 269 (339)
T 3rty_A 223 PYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNV 269 (339)
T ss_dssp CEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSSSCS
T ss_pred EEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCCCCc
Confidence 89999999999999999999999999999999999999999999863
No 6
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.92 E-value=5.3e-26 Score=215.21 Aligned_cols=163 Identities=20% Similarity=0.365 Sum_probs=125.7
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQGHGLASPGSANSEEGSGMNTGTANPDVSSLMSLSSSS 81 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~~~~~~~~~~~P~~~~~~~~s~~~~~t~~p~v~a~~~~~~~~ 81 (294)
+.|+++|| +.|.||+|+++||||||+|+++++++|.+...+. . +..++.
T Consensus 113 ~~~~~~lG--y~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~-------~------------~~~~~~---------- 161 (361)
T 4f3l_A 113 ESVTSLLE--HLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLES-------D------------SLTPEY---------- 161 (361)
T ss_dssp TTHHHHHC--CCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCC-------C------------SSSCGG----------
T ss_pred chhhhhcC--CCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCC-------C------------CCCccc----------
Confidence 46899999 6699999999999999999999999999753110 0 000110
Q ss_pred CCCCCCcceeeeccccccCCcccccCCCceeee--e----------------------------------eEEee-----
Q psy17809 82 SYKGCDRSFCIRMKSTLTKRGCHFKSSGYRSLD--G----------------------------------FAFAL----- 120 (294)
Q Consensus 82 ~~~~~~RsF~cRMKc~Lt~Rg~~lkssgyKViH--G----------------------------------~aial----- 120 (294)
.....+|+|+|||++..... .+.++|+++| | +|++.
T Consensus 162 ~~~~~~~~f~cr~~~~~~~~---~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~ 238 (361)
T 4f3l_A 162 LKSKNQLEFCCHMLRGTIDP---KEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQ 238 (361)
T ss_dssp GCGGGEEEEEEEEECCCSCS---SSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCC
T ss_pred ccccCceeEEEEEeccCCCC---CCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCC
Confidence 11245799999998754221 1234455544 1 22221
Q ss_pred ----------c---------cCceEEeeccccceeecc------------------------ceeeEeeecceeeeEEEe
Q psy17809 121 ----------G---------SDGRFLYISETVSIYLGL------------------------SQWQVINKGQVLTHYYRL 157 (294)
Q Consensus 121 ----------P---------lD~kf~~~D~Rvs~~LGy------------------------sH~~LL~KGQ~~t~~YR~ 157 (294)
| +||+|+||++++..+||| .|+.++.+|+..+..|||
T Consensus 239 ~~~e~~~i~~~~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~ 318 (361)
T 4f3l_A 239 FIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRF 318 (361)
T ss_dssp SSEEECSCSSSCCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEE
T ss_pred cccccccccCCcceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 1 799999999999999999 345567788888888999
Q ss_pred eeeCCcEEEEEEEEEEeecCCCCCcCcEEEEeEEecCcccc
Q psy17809 158 MNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGREYE 198 (294)
Q Consensus 158 l~K~G~wVWlqT~~~vv~n~kn~~~e~IVcvn~vlS~~E~~ 198 (294)
+.|+|+|+|+++.+++++|+|++++++|||+|++|++.|..
T Consensus 319 ~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 319 LTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp ECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHH
T ss_pred EecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhh
Confidence 99999999999999999999999999999999999987754
No 7
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.82 E-value=5.9e-21 Score=160.32 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=62.9
Q ss_pred cCceEEeeccc---cceeecc------------------------ceeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEe
Q psy17809 122 SDGRFLYISET---VSIYLGL------------------------SQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 122 lD~kf~~~D~R---vs~~LGy------------------------sH~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv 174 (294)
+||||+|||+| +...+|| +|+++|.+||+.+.+|||+.|+|+||||||+|++|
T Consensus 15 ~dGKf~~vDq~~~r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~qT~sk~f 94 (132)
T 1oj5_A 15 TTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLC 94 (132)
T ss_dssp TTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEE
T ss_pred CCCcEEEEecccccccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEEEEEEEe
Confidence 89999999995 5666666 45568899999999999999999999999999999
Q ss_pred ecCCCCCcCcEEEEeEEecCcccc
Q psy17809 175 CSSKNADEQNIICVNYVISGREYE 198 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS~~E~~ 198 (294)
+|||+++++||||+|+|+++..+-
T Consensus 95 ~np~t~e~e~Ivs~n~v~r~~~~~ 118 (132)
T 1oj5_A 95 YPQSPDMQPFIMGIHIIDREHSGL 118 (132)
T ss_dssp CC----CCCEEEEEEEEECC----
T ss_pred cCCCCCCCCEEEEEEEEEcCCCCc
Confidence 999999999999999999876643
No 8
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.82 E-value=2.3e-09 Score=81.07 Aligned_cols=77 Identities=35% Similarity=0.704 Sum_probs=65.2
Q ss_pred ccCceEEeeccccceeeccc------------------------eeeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 121 GSDGRFLYISETVSIYLGLS------------------------QWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGys------------------------H~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
-+|++|+||.+.+..++||. ...++..|+....-||++.|+|.|+|+...+..++|
T Consensus 16 d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d 95 (117)
T 3f1p_A 16 SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYN 95 (117)
T ss_dssp CTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEEEEEEEE
T ss_pred CCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEEeeEEEEC
Confidence 37999999999999999991 112344566666679999999999999999999999
Q ss_pred CCCCCcCcEEEEeEEecCccc
Q psy17809 177 SKNADEQNIICVNYVISGREY 197 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~~E~ 197 (294)
+++.++.+|||+.+-|++.+.
T Consensus 96 ~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 96 PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp TTTTEEEEEEEEEEECSCCBC
T ss_pred CCCCCceEEEEEeeecccccc
Confidence 888999999999999987764
No 9
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.76 E-value=2e-08 Score=79.45 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=32.4
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
+.++.+|| +.|.||+|+++||||||+|++++++++.
T Consensus 26 ~~~~~~lG--y~~~el~G~~~~~~ihp~D~~~~~~~~~ 61 (111)
T 2vlg_A 26 ANSKLHLG--YLQGEMIGSFLKTFLHEEDQFLVESYFY 61 (111)
T ss_dssp TTHHHHHS--CCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred hHHHHHhC--CCHHHHcCCcHHHeECHhHHHHHHHHHh
Confidence 35789999 7799999999999999999999988774
No 10
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.75 E-value=1.1e-08 Score=77.93 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=62.7
Q ss_pred cCceEEeeccccceeeccc-------------e-----------eeEe-eecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLS-------------Q-----------WQVI-NKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys-------------H-----------~~LL-~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++|+||.+.+..++||. | ..++ .+++....-||++.|+|.|+|+.+.+..++|
T Consensus 20 ~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~ 99 (121)
T 3f1p_B 20 IEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQN 99 (121)
T ss_dssp TTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEEEEEEEEEECC
T ss_pred CCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEEEEEEEEEEEC
Confidence 7899999999999999991 1 1233 3455666789999999999999999999999
Q ss_pred CCCCCcCcEEEEeEEecCcc
Q psy17809 177 SKNADEQNIICVNYVISGRE 196 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~~E 196 (294)
+++.++.+|||+.+-|++..
T Consensus 100 ~~~g~~~~iv~~~~DIT~~k 119 (121)
T 3f1p_B 100 PYSDEIEYIICTNTNVKNSS 119 (121)
T ss_dssp TTCCCCCEEEEEEEECCCC-
T ss_pred CCCCceeEEEEEeEEccccc
Confidence 88999999999999887654
No 11
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.60 E-value=4.4e-08 Score=73.94 Aligned_cols=74 Identities=23% Similarity=0.459 Sum_probs=60.7
Q ss_pred cCceEEeeccccceeecccee------------------------eEee-ecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQW------------------------QVIN-KGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~------------------------~LL~-KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++|+||.+.+..++||... .++. +++....-||++.|+|.|+|++..+..++|
T Consensus 21 ~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~~~~~~~~~~d 100 (121)
T 2kdk_A 21 VNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTN 100 (121)
T ss_dssp TTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred CCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEEEEEEEEEEEC
Confidence 689999999999999999211 1122 233445569999999999999999999999
Q ss_pred CCCCCcCcEEEEeEEecCc
Q psy17809 177 SKNADEQNIICVNYVISGR 195 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~~ 195 (294)
+++.++.++||+++++++.
T Consensus 101 ~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 101 PDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp CSSSCEEEEEEEEECCSSC
T ss_pred CCCCeeeEEEEEEEecccc
Confidence 9988999999999999875
No 12
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.78 E-value=2.4e-05 Score=58.53 Aligned_cols=73 Identities=23% Similarity=0.389 Sum_probs=56.5
Q ss_pred cCceEEeeccccceeecccee-------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQW-------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~-------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.+++|+||.+.+..++||... .++..+.....-||++.|+|.|+|++..+..+++
T Consensus 12 ~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d 91 (115)
T 3h9w_A 12 QTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRD 91 (115)
T ss_dssp TTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEEEEEEC
Confidence 568999999999999999211 1223344455679999999999999999999986
Q ss_pred CCCCCcCcEEEEeEEecCc
Q psy17809 177 SKNADEQNIICVNYVISGR 195 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS~~ 195 (294)
.++++..++++..-|++.
T Consensus 92 -~~G~~~~~~G~~~Dit~~ 109 (115)
T 3h9w_A 92 -DSGEVEALIGFMFDISLE 109 (115)
T ss_dssp -TTSCEEEEEEEEEECGGG
T ss_pred -CCCCEEEEEEEEeccCcc
Confidence 446677889988877654
No 13
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=96.66 E-value=0.0011 Score=51.80 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=51.6
Q ss_pred cCceEEeeccccceeecccee--------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SDGRFLYISETVSIYLGLSQW--------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~--------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
++...+|+++.+..++||... ..+..+.....-||+..++|.|.|+...+..++
T Consensus 27 ~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~ 106 (142)
T 3mr0_A 27 PKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALW 106 (142)
T ss_dssp TTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred cCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEE
Confidence 567788999999999999211 111223344556999999999999999999998
Q ss_pred cCCCCCcCcEEEEeEEecC
Q psy17809 176 SSKNADEQNIICVNYVISG 194 (294)
Q Consensus 176 n~kn~~~e~IVcvn~vlS~ 194 (294)
+. ++++..++++..=|++
T Consensus 107 d~-~g~~~~~~G~~~DITe 124 (142)
T 3mr0_A 107 NS-AGEPYRMVGWIMDVTD 124 (142)
T ss_dssp CT-TSCEEEEEEEEEECHH
T ss_pred CC-CCCEEEEEEEEEcCch
Confidence 63 4566677777655543
No 14
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=96.61 E-value=0.004 Score=45.21 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=46.3
Q ss_pred cCceEEeeccccceeeccceee--------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ--------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~--------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
.+++++|+......++||...+ ++..++....-||+..++|.++|+...+..++
T Consensus 22 ~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~ 101 (118)
T 3icy_A 22 VSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIEDHMRSSF 101 (118)
T ss_dssp TTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred cCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEEEEEEE
Confidence 5788888888888888882221 22334445566999999999999999999888
Q ss_pred cCCCCCcCcEEEE
Q psy17809 176 SSKNADEQNIICV 188 (294)
Q Consensus 176 n~kn~~~e~IVcv 188 (294)
+.. +++..++++
T Consensus 102 ~~~-g~~~~~~g~ 113 (118)
T 3icy_A 102 SDD-GLFSGIDGI 113 (118)
T ss_dssp CTT-SCEEEEEEE
T ss_pred CCC-CCEEEEEEE
Confidence 643 333444444
No 15
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=96.26 E-value=0.0048 Score=44.82 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=50.6
Q ss_pred cCceEEeeccccceeeccce--------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SDGRFLYISETVSIYLGLSQ--------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH--------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
.++.++++.+.+..++||.. ..++..+.....-||+..++|.++|+...+..++
T Consensus 25 ~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~ 104 (125)
T 3nja_A 25 MESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQR 104 (125)
T ss_dssp TTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred cCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEE
Confidence 67889999999999999811 1122334445667999999999999999999887
Q ss_pred cCCCCCcCcEEEEeEEec
Q psy17809 176 SSKNADEQNIICVNYVIS 193 (294)
Q Consensus 176 n~kn~~~e~IVcvn~vlS 193 (294)
+. +.++..++++-.=|+
T Consensus 105 ~~-~g~~~~~~g~~~DIT 121 (125)
T 3nja_A 105 QA-SGQVDHLWGTVIDMT 121 (125)
T ss_dssp CT-TSCEEEEEEEEEECC
T ss_pred CC-CCCEEEEEEEEEecc
Confidence 63 345555666644343
No 16
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.15 E-value=0.0024 Score=47.79 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=32.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.+++.|| +..-|++|++++++|||+|++.+++.+..
T Consensus 30 ~~~~~~G--~~~~el~g~~~~~~i~p~d~~~~~~~~~~ 65 (121)
T 3f1p_B 30 RCVATVG--YQPQELLGKNIVEFCHPEDQQLLRDSFQQ 65 (121)
T ss_dssp THHHHHS--CCGGGTTTSBGGGGBCTTTHHHHHHHHHH
T ss_pred chhhhhC--CChHHHcCCCHHHeECHHHHHHHHHHHHH
Confidence 4788999 67999999999999999999999988764
No 17
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=96.10 E-value=0.0022 Score=47.64 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=31.8
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.+++.|| +..-|++|++++++|||+|++.+++.+..
T Consensus 27 ~~~~~~G--y~~~el~g~~~~~~~~p~d~~~~~~~~~~ 62 (117)
T 3f1p_A 27 RITELIG--YHPEELLGRSAYEFYHALDSENMTKSHQN 62 (117)
T ss_dssp HHHHHHC--CCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred ChhhhhC--CCHHHHcCCchhheECHHHHHHHHHHHHH
Confidence 5788999 67999999999999999999999887753
No 18
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=95.96 E-value=0.0077 Score=45.00 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=48.8
Q ss_pred cCceEEeeccccceeeccceee------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++++||.+....++||+..+ .+..|+....-+++..|+|..+|+......++|.
T Consensus 14 ~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~pi~d~ 93 (109)
T 1n9l_A 14 PDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTP 93 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEEEEEEEEEECC
Confidence 4699999999999999992211 1123444556678889999999999988888764
Q ss_pred CCCCcCcEEEEeE
Q psy17809 178 KNADEQNIICVNY 190 (294)
Q Consensus 178 kn~~~e~IVcvn~ 190 (294)
+.+...+|++-.
T Consensus 94 -~G~~~~~v~~~~ 105 (109)
T 1n9l_A 94 -DGRVSKFVGVQV 105 (109)
T ss_dssp -TSCEEEEEEEEE
T ss_pred -CCCEEEEEEEEE
Confidence 345555666543
No 19
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=95.91 E-value=0.0097 Score=42.49 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=49.3
Q ss_pred CceEEeeccccceeeccce------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQ------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
+++++|+.+....++||.. ...+.++.....-+++..++|.++|+......+++.
T Consensus 19 ~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 97 (115)
T 4eet_B 19 DNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQ- 97 (115)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECT-
T ss_pred CCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEEEEEEEEEECC-
Confidence 8999999999999999911 112234455556789999999999999998888764
Q ss_pred CCCcCcEEEEeEEe
Q psy17809 179 NADEQNIICVNYVI 192 (294)
Q Consensus 179 n~~~e~IVcvn~vl 192 (294)
+.+...++++-.=|
T Consensus 98 ~g~~~~~~~~~~DI 111 (115)
T 4eet_B 98 KGELQYFIGVQLDG 111 (115)
T ss_dssp TSCEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEee
Confidence 34445566654433
No 20
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=95.40 E-value=0.017 Score=45.86 Aligned_cols=71 Identities=8% Similarity=-0.002 Sum_probs=52.7
Q ss_pred ceEEeeccccceeecccee------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCCC
Q psy17809 124 GRFLYISETVSIYLGLSQW------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKN 179 (294)
Q Consensus 124 ~kf~~~D~Rvs~~LGysH~------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~kn 179 (294)
++|+||.+....++||... ..+..|.....-+++..++|..+|+......+++. +
T Consensus 30 g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~-~ 108 (176)
T 4hia_A 30 QPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGR-P 108 (176)
T ss_dssp CCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSB-T
T ss_pred CcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCC-C
Confidence 9999999999999999211 12334555666788999999999999998888763 4
Q ss_pred CCcCcEEEEeEEecCc
Q psy17809 180 ADEQNIICVNYVISGR 195 (294)
Q Consensus 180 ~~~e~IVcvn~vlS~~ 195 (294)
++..++|++-.=|++.
T Consensus 109 g~~~~~~~~~~DITe~ 124 (176)
T 4hia_A 109 DAPDYFLGSQFELGRS 124 (176)
T ss_dssp TBCSEEEEEEEEESSS
T ss_pred CCeEEEEEEEEECcHh
Confidence 5566777776656544
No 21
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=95.37 E-value=0.02 Score=42.86 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=49.4
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++++||.+....++||+..+++ ..|+....-+++..|+|..+|+......+++.
T Consensus 23 ~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~ 102 (120)
T 2gj3_A 23 LKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNE 102 (120)
T ss_dssp TTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECC
Confidence 689999999999999999322221 22333444578899999999999998888763
Q ss_pred CCCCcCcEEEEeEEec
Q psy17809 178 KNADEQNIICVNYVIS 193 (294)
Q Consensus 178 kn~~~e~IVcvn~vlS 193 (294)
+++...+|++-.=|+
T Consensus 103 -~g~~~~~v~~~~DIT 117 (120)
T 2gj3_A 103 -AGETIYYLGMHRDTS 117 (120)
T ss_dssp -TSCEEEEEEEEEECC
T ss_pred -CCCEEEEEEEeccCc
Confidence 344555666544333
No 22
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=95.36 E-value=0.015 Score=43.22 Aligned_cols=70 Identities=9% Similarity=0.040 Sum_probs=48.5
Q ss_pred cCceEEeeccccceeeccceee-------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ-------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~-------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++|++|.+....++||...+ .+..+.....-+++..|+|.++|+...+..+ +
T Consensus 20 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~ 98 (120)
T 3mqq_A 20 RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-D 98 (120)
T ss_dssp ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEES-S
T ss_pred cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEEEEEEC-C
Confidence 5899999999999999991111 1223334445689999999999999988877 3
Q ss_pred CCCCCcCcEEEEeEEec
Q psy17809 177 SKNADEQNIICVNYVIS 193 (294)
Q Consensus 177 ~kn~~~e~IVcvn~vlS 193 (294)
. ......+|++-.=|+
T Consensus 99 ~-~~~~~~~v~~~~DIT 114 (120)
T 3mqq_A 99 R-TAPLAAGVWTFEDLS 114 (120)
T ss_dssp T-TSTTSSEEEEEEESC
T ss_pred C-CCCceeEEEEEEccc
Confidence 3 234556676644343
No 23
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=95.21 E-value=0.0064 Score=56.97 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.++.+|| +.--||+|.++|||+||+|++.+++.+..
T Consensus 194 ~~~~lLG--Y~peELig~s~~~~vHPdD~~~~~~~~~~ 229 (320)
T 4dj2_A 194 RAAPLLG--YLPQDLLGAPVLLFLHPEDRPLMLAIHKK 229 (320)
T ss_dssp THHHHHS--CCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred ceeccCC--cChHHHcCCcHHHhCCHHHHHHHHHHHHH
Confidence 3678899 77999999999999999999999887753
No 24
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=95.04 E-value=0.0054 Score=57.12 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=30.9
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++.+|| +..-||+|.|+|||+||+|++.+++.+.
T Consensus 183 ~~~~lLG--Y~peELig~s~~~~iHpdD~~~~~~~~~ 217 (309)
T 3gdi_A 183 RAVPLLG--YLPQDLIETPVLVQLHPSDRPLMLAIHK 217 (309)
T ss_dssp THHHHHS--CCHHHHTTSBHHHHBCTTSHHHHHHHHH
T ss_pred ccccccC--cCHHHHcCCCHHHhCCHHHHHHHHHHHH
Confidence 3678999 7799999999999999999999887665
No 25
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.00 E-value=0.011 Score=43.77 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=30.7
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.|| +...|++|+++++++||+|.+.+++.+.
T Consensus 31 ~~~~~~G--~~~~el~g~~~~~~~~p~d~~~~~~~~~ 65 (121)
T 2kdk_A 31 RATAILG--YLPQELLGTSCYEYFHQDDHNNLTDKHK 65 (121)
T ss_dssp HHHHHTC--CCTTTSBTSBTTTTBCSSSHHHHHHHHH
T ss_pred hHHHHHC--CCHHHHcCCcHHHeeCHHHHHHHHHHHH
Confidence 4678899 6799999999999999999998877665
No 26
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=94.99 E-value=0.018 Score=44.62 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=48.1
Q ss_pred CceEEeeccccceeecccee------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQW------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|++++||.+.+..++||... ..+..|.....-+++..++|.++|+...+..+++.
T Consensus 57 ~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~- 135 (166)
T 3ue6_A 57 DNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDS- 135 (166)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECT-
T ss_pred CCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCC-
Confidence 79999999999999999111 12234555556688899999999999988888763
Q ss_pred CCCcCcEEEEe
Q psy17809 179 NADEQNIICVN 189 (294)
Q Consensus 179 n~~~e~IVcvn 189 (294)
+.+..++|++-
T Consensus 136 ~g~~~~~~~~~ 146 (166)
T 3ue6_A 136 KGNIVNYVGVQ 146 (166)
T ss_dssp TSCEEEEEEEC
T ss_pred CCCEEEEEEEE
Confidence 34445556653
No 27
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=94.98 E-value=0.0083 Score=56.57 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.0
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++.+|| +..-||+|.++|+||||+|++.+++.+.
T Consensus 172 ~~~~lLG--Y~peELiG~s~~~~vHPdD~~~~~~~~~ 206 (339)
T 3rty_A 172 AAVSALG--YLPQDLIGRSIMDFYHHEDLSVMKETYE 206 (339)
T ss_dssp THHHHHC--CCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred hhhcccC--CCHHHHcCCcHHHEECHHHHHHHHHHHH
Confidence 4678999 6799999999999999999999987665
No 28
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=94.94 E-value=0.0058 Score=57.21 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=31.0
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++.+|| +..-||+|.++|||+||+|++.+++.+.
T Consensus 192 ~~~~lLG--Y~peELig~s~~~~vHPdD~~~~~~~~~ 226 (317)
T 4dj3_A 192 RAVPLLG--YLPQDLIGTSILTYLHPEDRPLMVAIHQ 226 (317)
T ss_dssp THHHHHS--CCHHHHTTSBGGGGBCTTTTTHHHHHHH
T ss_pred HHhhhcC--cChHHHcCCCHHHeECHHHHHHHHHHHH
Confidence 3678899 7799999999999999999999987765
No 29
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=94.91 E-value=0.017 Score=43.97 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=47.0
Q ss_pred CceEEeeccccceeeccceeeE------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQWQV------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~~L------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|++++||.+.+..++||...++ +..|.....-+++..|+|..+|+......+.+..
T Consensus 21 ~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~ 100 (132)
T 2pr5_A 21 DNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED 100 (132)
T ss_dssp TCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred CCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeEEEEEeccCCC
Confidence 4599999999999999922111 1233444556788999999999998888877532
Q ss_pred CCCcCcEEEEeEEec
Q psy17809 179 NADEQNIICVNYVIS 193 (294)
Q Consensus 179 n~~~e~IVcvn~vlS 193 (294)
..++|++-+=|+
T Consensus 101 ---~~~~~~~~~DIT 112 (132)
T 2pr5_A 101 ---KTYFVGIQNDIT 112 (132)
T ss_dssp ---EEEEEEEEEECH
T ss_pred ---eeEEEEEEEeCc
Confidence 455666544444
No 30
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=94.74 E-value=0.026 Score=41.67 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred CceEEeeccccceeeccce------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQ------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|+++++|.+.+..++||.. ...+..+.....-+++..++|..+|+...+..+++.
T Consensus 19 ~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~- 97 (128)
T 3t50_A 19 DNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNA- 97 (128)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECT-
T ss_pred CCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEEEEEEEEECC-
Confidence 7899999999999999911 112234455556789999999999999888888763
Q ss_pred CCCcCcEEEEeEEe
Q psy17809 179 NADEQNIICVNYVI 192 (294)
Q Consensus 179 n~~~e~IVcvn~vl 192 (294)
+.+...++++-.=|
T Consensus 98 ~g~~~~~~~~~~DI 111 (128)
T 3t50_A 98 NGRLQHFVSSQLDV 111 (128)
T ss_dssp TSCEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEc
Confidence 33445566653333
No 31
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=94.70 E-value=0.036 Score=46.89 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=54.9
Q ss_pred cCceEEeeccccceeeccceeeE------------------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV------------------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L------------------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.|++|+||.+....++||+..++ +..|.....-+++..|+|.++|+......+++.
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~p~~d~ 86 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDN 86 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEEEEECS
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEEEEEcC
Confidence 68999999999999999922211 223445556689999999999999998888763
Q ss_pred CCCCcCcEEEEeEEecCcc
Q psy17809 178 KNADEQNIICVNYVISGRE 196 (294)
Q Consensus 178 kn~~~e~IVcvn~vlS~~E 196 (294)
+.++..++++..=|++..
T Consensus 87 -~g~~~~~~~~~~DIT~~k 104 (227)
T 3ewk_A 87 -AGKPRQYISIRRDITAQK 104 (227)
T ss_dssp -SSCEEEEEEEEEECTTTT
T ss_pred -CCCEEEEEEEEEehhhHH
Confidence 355666777766666543
No 32
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=94.56 E-value=0.041 Score=39.16 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=47.5
Q ss_pred cC-ceEEeeccccceeeccceee----------E---------------eeecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SD-GRFLYISETVSIYLGLSQWQ----------V---------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD-~kf~~~D~Rvs~~LGysH~~----------L---------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
.+ ++++++.+.+..++||...+ + +.+|+....-||+..++|.+.|+...+..++
T Consensus 29 ~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~ 108 (125)
T 3eeh_A 29 ADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDGESADVECRVNATEEYQRWVWIQGEPIT 108 (125)
T ss_dssp TTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTTCCEEEEEEECGGGTTCEEEEEEEEEEE
T ss_pred cCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEEecEEEE
Confidence 56 89999999999999992110 0 1234555667999999999999999998888
Q ss_pred cCCCCCcCcEEEE
Q psy17809 176 SSKNADEQNIICV 188 (294)
Q Consensus 176 n~kn~~~e~IVcv 188 (294)
+. ++++..++++
T Consensus 109 ~~-~g~~~~~~~~ 120 (125)
T 3eeh_A 109 ND-AGETVRVAGF 120 (125)
T ss_dssp CT-TSCEEEEEEE
T ss_pred CC-CCCEEEEEEE
Confidence 63 3444555554
No 33
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=94.43 E-value=0.01 Score=56.25 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=31.9
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
.++..|| +.--||+|.++|+||||+|.+.+++.+..
T Consensus 296 ~~~~ilG--Y~~eEl~g~~~~~~iHpdD~~~~~~~~~~ 331 (387)
T 4f3l_B 296 RATAILA--YLPQELLGTSCYEYFHQDDIGHLAECHRQ 331 (387)
T ss_dssp HHHHHHC--CCHHHHTTSBGGGTBCHHHHHHHHHHHHH
T ss_pred CcccccC--CCHHHHcCCcHHHeeCHHHHHHHHHHHHH
Confidence 4678899 67899999999999999999999988763
No 34
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=94.24 E-value=0.058 Score=37.97 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=49.7
Q ss_pred cCceEEeeccccceeeccce------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQ------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.+++++++......++||.. ...+..|.....-+++..++|.++|+......+++.
T Consensus 25 ~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 104 (124)
T 3lyx_A 25 LQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGE 104 (124)
T ss_dssp TTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECS
T ss_pred CCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEEEEEEECC
Confidence 58999999999999999811 112233445556689999999999999998888763
Q ss_pred CCCCcCcEEEEeEEec
Q psy17809 178 KNADEQNIICVNYVIS 193 (294)
Q Consensus 178 kn~~~e~IVcvn~vlS 193 (294)
+++...++++-.=++
T Consensus 105 -~g~~~~~~~~~~Dit 119 (124)
T 3lyx_A 105 -NYQMVGALGINRDIT 119 (124)
T ss_dssp -TTCEEEEEEEEEECS
T ss_pred -CCCEEEEEEEEecch
Confidence 344455666644343
No 35
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.22 E-value=0.042 Score=47.19 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=52.4
Q ss_pred CceEEeeccccceeeccceee------------------------EeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQWQ------------------------VINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~~------------------------LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|++|+||.+.+..++||.-.+ .+..+.....-+++..|+|..+|+......+++.
T Consensus 85 ~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~- 163 (258)
T 3p7n_A 85 DNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDD- 163 (258)
T ss_dssp TCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECT-
T ss_pred CCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcC-
Confidence 889999999999999992211 2233444555688899999999999999888864
Q ss_pred CCCcCcEEEEeEEecCc
Q psy17809 179 NADEQNIICVNYVISGR 195 (294)
Q Consensus 179 n~~~e~IVcvn~vlS~~ 195 (294)
+.++.++|++-.=|++.
T Consensus 164 ~g~~~~~v~~~~DITer 180 (258)
T 3p7n_A 164 DDELLYFLGSQVEVDDD 180 (258)
T ss_dssp TSCSEEEEEEEEEC---
T ss_pred CCCEEEEEEEeeecchh
Confidence 45566778876666655
No 36
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.19 E-value=0.048 Score=48.59 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=54.1
Q ss_pred CceEEeeccccceeecccee------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQW------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
|++|+||.+.+..++||... ..+..|.....-+|+..|+|.++|+......+++.
T Consensus 33 ~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~- 111 (332)
T 2wkq_A 33 DNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQ- 111 (332)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECT-
T ss_pred CCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEEEeeEEEEeEcC-
Confidence 89999999999999999211 12334555566789999999999999999888864
Q ss_pred CCCcCcEEEEeEEecCc
Q psy17809 179 NADEQNIICVNYVISGR 195 (294)
Q Consensus 179 n~~~e~IVcvn~vlS~~ 195 (294)
.++...++++-.=+++.
T Consensus 112 ~g~~~~~v~~~~DITe~ 128 (332)
T 2wkq_A 112 KGDVQYFIGVQLDGTEH 128 (332)
T ss_dssp TSCEEEEEEEEEEESSC
T ss_pred CCCEEEEEEEeccCchh
Confidence 34556677776666653
No 37
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=94.17 E-value=0.013 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=31.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++..|| +..-||+|.++|+||||+|.+.+++.+.
T Consensus 269 ~~~~ilG--Y~~eEl~g~~~~~~iHpdD~~~~~~~~~ 303 (361)
T 4f3l_A 269 RAPPIIG--YLPFEVLGTSGYDYYHVDDLENLAKCHE 303 (361)
T ss_dssp TSHHHHC--CCHHHHTTSBGGGGBCHHHHHHHHHHHH
T ss_pred hhhhhhC--cCHHHHcCCCHHHeECHHHHHHHHHHHH
Confidence 4678999 6799999999999999999999987765
No 38
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=93.57 E-value=0.11 Score=37.86 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=50.0
Q ss_pred CceEEeeccccceeecccee------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 123 DGRFLYISETVSIYLGLSQW------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
+++++++.+....++||... ..+..|......+++..++|.++|+......+++.
T Consensus 24 ~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 102 (146)
T 2v0u_A 24 DNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQ- 102 (146)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECT-
T ss_pred CceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEEEEEEEeECC-
Confidence 78999999999999998211 12233444556688999999999999988888753
Q ss_pred CCCcCcEEEEeEEecCc
Q psy17809 179 NADEQNIICVNYVISGR 195 (294)
Q Consensus 179 n~~~e~IVcvn~vlS~~ 195 (294)
+.++..++++-.=+++.
T Consensus 103 ~g~~~~~~~~~~Dit~~ 119 (146)
T 2v0u_A 103 KGDVQYFIGVQLDGTEH 119 (146)
T ss_dssp TSCEEEEEEEEEEESSC
T ss_pred CCCEEEEEEEEeechHH
Confidence 34445566665545543
No 39
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=92.89 E-value=0.1 Score=39.79 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=46.0
Q ss_pred cCceEEeeccccceeeccceeeE-----------------------------------eeecceeeeEEEeeeeCCcEEE
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQV-----------------------------------INKGQVLTHYYRLMNKNGGYTW 166 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~L-----------------------------------L~KGQ~~t~~YR~l~K~G~wVW 166 (294)
.|++++||.+....++||...++ +..|.....-+++..|+|.++|
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 125 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFV 125 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEE
T ss_pred CCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEE
Confidence 47999999999999999921111 1233444556888999999999
Q ss_pred EEEEEEEeecCCCCCcCcEEEE
Q psy17809 167 VQSCATVVCSSKNADEQNIICV 188 (294)
Q Consensus 167 lqT~~~vv~n~kn~~~e~IVcv 188 (294)
+......+++. +.+...+|++
T Consensus 126 ~~~~~~~i~~~-~g~~~~~v~~ 146 (149)
T 3d72_A 126 NFLTMIPVRDE-TGEYRYSMGF 146 (149)
T ss_dssp EEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEEEEEEEcC-CCCEEEEEEE
Confidence 99998888763 3344444443
No 40
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=92.85 E-value=0.14 Score=35.06 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=44.1
Q ss_pred CceEEeeccccceeecccee---------eEe-----------------eecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 123 DGRFLYISETVSIYLGLSQW---------QVI-----------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH~---------~LL-----------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
|++++|+......++||... .++ ..+......+++..++|..+|+......+++
T Consensus 13 ~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 92 (110)
T 1byw_A 13 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKN 92 (110)
T ss_dssp SCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEEEEEEeec
Confidence 68999999999999998211 111 1233344557888999999999998888775
Q ss_pred CCCCCcCcEEEE
Q psy17809 177 SKNADEQNIICV 188 (294)
Q Consensus 177 ~kn~~~e~IVcv 188 (294)
.. .+...++++
T Consensus 93 ~~-g~~~~~~~~ 103 (110)
T 1byw_A 93 ED-GAVIMFILN 103 (110)
T ss_dssp TT-CCEEEEEEE
T ss_pred CC-CCEEEEEEE
Confidence 33 333445544
No 41
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=92.81 E-value=0.15 Score=36.02 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=42.7
Q ss_pred cCceEEeeccccceeeccceeeEe----------------------eecceee-eEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI----------------------NKGQVLT-HYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL----------------------~KGQ~~t-~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
.|++++++.+....++||...+++ .+|+... ..+++..++|...|+......+++..
T Consensus 21 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~ 100 (114)
T 3luq_A 21 REMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGE 100 (114)
T ss_dssp TTCBEEEECHHHHHHTTCCSSCCTTCBHHHHCTTCCHHHHHHHHHHHTTCCEEEEEEEEEC--CCEEEEEEEEEEEECTT
T ss_pred CCcEEEEECHHHHHHHCCCHHHHcCCcHHHHCCccHHHHHHHHHHHhcCCcceeeeeEEEcCCCcEEEEEEEEEEeECCC
Confidence 689999999999999999322211 1233332 33489999999999998888887633
Q ss_pred CCCcCcEEEE
Q psy17809 179 NADEQNIICV 188 (294)
Q Consensus 179 n~~~e~IVcv 188 (294)
.+...++++
T Consensus 101 -g~~~~~~~~ 109 (114)
T 3luq_A 101 -GRVGGVVIF 109 (114)
T ss_dssp -SCEEEEEEE
T ss_pred -CCEEEEEEE
Confidence 334445544
No 42
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=92.78 E-value=0.15 Score=35.97 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred cCceEEeeccccceeecccee------------------------eEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 122 SDGRFLYISETVSIYLGLSQW------------------------QVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~------------------------~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.+++++++...+..++||... ..+..+......+++..++|..+|+......+.+.
T Consensus 27 ~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 106 (130)
T 2z6d_A 27 PHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD 106 (130)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECC
Confidence 579999999999999998111 12233444555678889999999999888887753
Q ss_pred CCCCcCcEEEE
Q psy17809 178 KNADEQNIICV 188 (294)
Q Consensus 178 kn~~~e~IVcv 188 (294)
+.+...++++
T Consensus 107 -~g~~~~~~~~ 116 (130)
T 2z6d_A 107 -QGNTIKFIGM 116 (130)
T ss_dssp -TSCEEEEEEE
T ss_pred -CCCeeEEEEE
Confidence 3344445554
No 43
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=92.40 E-value=0.14 Score=36.82 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=40.1
Q ss_pred cCceEEeeccccceeeccceeeEe-------------------eecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI-------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL-------------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.|++|+||.+.+..++||+..+++ ..+.....-+++..++|.++|+......+.+
T Consensus 31 ~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~ 104 (118)
T 3olo_A 31 DNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLED 104 (118)
T ss_dssp TTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSCHHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred CCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHHHHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEE
Confidence 689999999999999999322111 1223334457889999999999888777653
No 44
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=92.22 E-value=0.097 Score=39.21 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=39.0
Q ss_pred cCceEEeeccccceeeccceeeEe-----------------------eecceeeeEEEeeeeCCcEEEEEEEEEEee
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI-----------------------NKGQVLTHYYRLMNKNGGYTWVQSCATVVC 175 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL-----------------------~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~ 175 (294)
.|++|++|.+.+..++||+..+++ ..+.....-+++..|+|..+|+...+..+.
T Consensus 29 ~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~ 105 (117)
T 2r78_A 29 AEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLP 105 (117)
T ss_dssp TTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEECT
T ss_pred CCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEEEEEEEec
Confidence 689999999999999999222211 122233345788999999999988777653
No 45
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=92.06 E-value=0.039 Score=42.84 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.5
Q ss_pred CCCCcceeeecccc
Q psy17809 84 KGCDRSFCIRMKST 97 (294)
Q Consensus 84 ~~~~RsF~cRMKc~ 97 (294)
.+.+|+|||||||.
T Consensus 95 ~~~~r~~~~~~~~~ 108 (111)
T 2vlg_A 95 ERTEREIILKMKVL 108 (111)
T ss_dssp ---CCCEEEEEEEC
T ss_pred CCceEEEEEEEEEe
Confidence 37899999999996
No 46
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=91.49 E-value=0.14 Score=39.28 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=50.1
Q ss_pred cCc---eEEeeccccceeeccce------------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEe
Q psy17809 122 SDG---RFLYISETVSIYLGLSQ------------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 122 lD~---kf~~~D~Rvs~~LGysH------------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv 174 (294)
.++ +++++...+..++||.. ...+..|+.....+++..++|..+|+...+..+
T Consensus 43 ~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 122 (162)
T 3sw1_A 43 KEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPV 122 (162)
T ss_dssp EETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEe
Confidence 567 99999999999999911 112234555556688889999999999988888
Q ss_pred ecCCCCCcCcEEEEeEEec
Q psy17809 175 CSSKNADEQNIICVNYVIS 193 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS 193 (294)
.+. +.+...++++-.=|+
T Consensus 123 ~~~-~g~~~~~~~~~~DiT 140 (162)
T 3sw1_A 123 KSD-FDQRTYFIGIQKDVS 140 (162)
T ss_dssp ECS-SSSCEEEEEEEEECH
T ss_pred ecC-CCCEEEEEEEEEeCc
Confidence 763 344456666644444
No 47
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=90.94 E-value=0.13 Score=36.99 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=29.2
Q ss_pred hhhhhhCCcceeeeecCCcc--ccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGSSV--FDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSV--fD~IHP~Dh~E~reQL~~ 40 (294)
.+++.+| +..-+++|... +++|||+|++.+.+.+..
T Consensus 32 ~~~~~~G--~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~ 69 (118)
T 3icy_A 32 PPAFLKT--LVSEHAGTTRLNTLSMIHHDDRHMLSNAYSK 69 (118)
T ss_dssp CCGGGGG--GEEEETTEEEEGGGGGBCGGGHHHHHHHHHH
T ss_pred hhHhhcC--CCHHHccCChhHHHHHcCHHHHHHHHHHHHH
Confidence 3677899 67888888754 899999999999887753
No 48
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=90.59 E-value=0.41 Score=34.36 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=44.4
Q ss_pred CceEEeeccccceeeccce---------eeE-----------------eeecceeeeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 123 DGRFLYISETVSIYLGLSQ---------WQV-----------------INKGQVLTHYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 123 D~kf~~~D~Rvs~~LGysH---------~~L-----------------L~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
+++++||...+..++||.. ... +..++.....+++..++|.++|+......+.+
T Consensus 41 ~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 120 (138)
T 2l0w_A 41 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKN 120 (138)
T ss_dssp TCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCCCEEEEEEEEEEEeC
Confidence 7999999999999999821 111 12233344567888999999999998888775
Q ss_pred CCCCCcCcEEEE
Q psy17809 177 SKNADEQNIICV 188 (294)
Q Consensus 177 ~kn~~~e~IVcv 188 (294)
. +.+...++++
T Consensus 121 ~-~g~~~~~~~~ 131 (138)
T 2l0w_A 121 E-DGAVIMFILN 131 (138)
T ss_dssp T-TSCEEEEEEE
T ss_pred C-CCCEEEEEEE
Confidence 3 2344444544
No 49
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=89.28 E-value=0.089 Score=38.61 Aligned_cols=36 Identities=14% Similarity=-0.027 Sum_probs=29.1
Q ss_pred hhhhhhCCcceeeeecCC-ccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTGS-SVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~Gq-SVfD~IHP~Dh~E~reQL~~ 40 (294)
.+++.|| +..-+++|. .+.++|||+|++.+.+.+..
T Consensus 22 ~~~~l~G--~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~ 58 (115)
T 3h9w_A 22 QIEALLG--WPQGSWKSVEDWATRMHPEDQEWVVNFCVK 58 (115)
T ss_dssp HHHHHHC--SCGGGCCBHHHHHHSBCHHHHHHHHHHHHH
T ss_pred hHHHHhC--CChHHccCHHHHHHhcCHHHHHHHHHHHHH
Confidence 4678899 668888884 45789999999999887753
No 50
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=88.61 E-value=0.56 Score=33.75 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=44.8
Q ss_pred cCceEEeeccccceeeccceee--------------------Ee---eecceeeeEEEeeeeCCcEEEEEEEEEEeecCC
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ--------------------VI---NKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSK 178 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~--------------------LL---~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~k 178 (294)
.+++++++...+..++||...+ .+ .++.....-+++..++|.++|+......+..
T Consensus 17 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 94 (126)
T 3mjq_A 17 REGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKEGTSIPAKARIWQGKW-- 94 (126)
T ss_dssp TTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCSEEEEEEECTTSCEEEEEEEEEEEES--
T ss_pred CCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCceeEEEEEccCCCEEEEEEEEEeeeE--
Confidence 6899999999999999992111 11 1122234458899999999999988775442
Q ss_pred CCCcCcEEEEeEEec
Q psy17809 179 NADEQNIICVNYVIS 193 (294)
Q Consensus 179 n~~~e~IVcvn~vlS 193 (294)
.....++++-+=|+
T Consensus 95 -~~~~~~~~~~~DIT 108 (126)
T 3mjq_A 95 -HNEPCLFAIIKDLS 108 (126)
T ss_dssp -SSSEEEEEEEEECC
T ss_pred -CCceEEEEEEEech
Confidence 22344555543343
No 51
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=88.43 E-value=0.39 Score=40.36 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=46.8
Q ss_pred cCceEEeeccccceeeccceee------------------------EeeecceeeeEEEeeeeCCc------EEEEEEEE
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ------------------------VINKGQVLTHYYRLMNKNGG------YTWVQSCA 171 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~------------------------LL~KGQ~~t~~YR~l~K~G~------wVWlqT~~ 171 (294)
.|++++||.+....++||+-.+ .+..|+....-++...|+|. .+|+....
T Consensus 129 ~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~ 208 (227)
T 3ewk_A 129 RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEIST 208 (227)
T ss_dssp TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEE
T ss_pred CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEE
Confidence 7899999999999999992211 22334455556788899986 78999888
Q ss_pred EEeecCCCCCcCcEEEE
Q psy17809 172 TVVCSSKNADEQNIICV 188 (294)
Q Consensus 172 ~vv~n~kn~~~e~IVcv 188 (294)
..++|.. .+...+|++
T Consensus 209 ~pi~d~~-g~~~~~v~i 224 (227)
T 3ewk_A 209 TPIHTDG-NGLVGYVQI 224 (227)
T ss_dssp EEEECSS-SCEEEEEEE
T ss_pred EEEECCC-CCEEEEEEE
Confidence 8888643 344444544
No 52
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=88.41 E-value=0.84 Score=35.88 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=41.3
Q ss_pred cCceEEeeccccceeeccc--------------------eeeEee----ecc-------eeeeEEEeeeeCCcEEEEEEE
Q psy17809 122 SDGRFLYISETVSIYLGLS--------------------QWQVIN----KGQ-------VLTHYYRLMNKNGGYTWVQSC 170 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys--------------------H~~LL~----KGQ-------~~t~~YR~l~K~G~wVWlqT~ 170 (294)
.|++|++|.+.+..++||+ +..++. .++ ....-+++..|+|..+|+...
T Consensus 25 ~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG~~~~vels 104 (129)
T 3mfx_A 25 ANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELS 104 (129)
T ss_dssp TTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCceEEEEEcCCCCEEEEEEE
Confidence 6899999999999999991 111111 111 112347888999999999988
Q ss_pred EEEeecCCCCCcCcEE
Q psy17809 171 ATVVCSSKNADEQNII 186 (294)
Q Consensus 171 ~~vv~n~kn~~~e~IV 186 (294)
...+. +.++-||+
T Consensus 105 is~i~---~~~~~~v~ 117 (129)
T 3mfx_A 105 ISYIP---GHEPMFVM 117 (129)
T ss_dssp EEEEC---SSSCEEEE
T ss_pred EEEec---CCCcEEEE
Confidence 87764 34544443
No 53
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=87.20 E-value=0.12 Score=52.19 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=53.7
Q ss_pred ccCceEEeeccccceeeccce-----------------------eeEeeecceeeeEEEeeeeCCcEEEEEEEEEEeecC
Q psy17809 121 GSDGRFLYISETVSIYLGLSQ-----------------------WQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSS 177 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGysH-----------------------~~LL~KGQ~~t~~YR~l~K~G~wVWlqT~~~vv~n~ 177 (294)
.+|++++|+.+++..++||.. .+++..|+....-||+..|+|.++|+...+..++|.
T Consensus 535 D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~~g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~ 614 (635)
T 4eho_A 535 DAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRT 614 (635)
T ss_dssp ETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHHHCCCBCCCCEECCSSSSCEECCCCEEEECST
T ss_pred CCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHHcCCcEEEEEEEEccCCcEEEEEEEEEEEECC
Confidence 489999999999999999921 123344566666789999999999999999999874
Q ss_pred CCCCcCcEEEEeEEe
Q psy17809 178 KNADEQNIICVNYVI 192 (294)
Q Consensus 178 kn~~~e~IVcvn~vl 192 (294)
. +++..+|++.+=|
T Consensus 615 ~-G~v~g~v~i~~DI 628 (635)
T 4eho_A 615 E-DQSLGFVLIFSDA 628 (635)
T ss_dssp T-SSCCEEEECCCCC
T ss_pred C-CCEEEEEEEEEeC
Confidence 3 4556666664433
No 54
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=86.70 E-value=0.064 Score=44.68 Aligned_cols=24 Identities=0% Similarity=0.221 Sum_probs=19.8
Q ss_pred eeecCCccccccCcccHH--HHHHHh
Q psy17809 15 VEMTGSSVFDYIHQADHT--ELAEQL 38 (294)
Q Consensus 15 vDl~GqSVfD~IHP~Dh~--E~reQL 38 (294)
-||+|.|+|||.||+|.+ .+++-+
T Consensus 36 qdLlGrsiy~f~H~~D~~~s~l~~h~ 61 (132)
T 1oj5_A 36 EDLVRKCIYAFFQPQGREPSYARQLF 61 (132)
T ss_dssp HHHHHHHHHHHTSCBTTBCCHHHHHH
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHH
Confidence 699999999999999965 555533
No 55
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=85.01 E-value=1.7 Score=31.71 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=36.6
Q ss_pred ccCceEEeeccccceeeccceeeEe--ee---------------------cceeeeEEEeeeeCCcEEEEEEEEEEe
Q psy17809 121 GSDGRFLYISETVSIYLGLSQWQVI--NK---------------------GQVLTHYYRLMNKNGGYTWVQSCATVV 174 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGysH~~LL--~K---------------------GQ~~t~~YR~l~K~G~wVWlqT~~~vv 174 (294)
-.|++|++|.+.+..++||...+++ .+ +.....-+++..|+|.++|+......+
T Consensus 34 d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~ 110 (126)
T 3bwl_A 34 DADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQLSGFSVDERRKFEGLYERRDGSTMSVEVHLLRF 110 (126)
T ss_dssp CTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTCCHHHHHHHHHTCCTTCEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccCCHHHHHHHHHHHhcCCCcceEEEEEeCCCCEEEEEEEeEEE
Confidence 3689999999999999999544441 10 111112267789999999997555443
No 56
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=84.34 E-value=0.46 Score=36.51 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=24.9
Q ss_pred hhhhhhCCcceeeeecC--CccccccCcccHHHHHHHhcC
Q psy17809 3 LFEQHQGTHILQVEMTG--SSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~G--qSVfD~IHP~Dh~E~reQL~~ 40 (294)
.+.+.+| +..-++.+ ..++++|||+|++.+.+.+..
T Consensus 37 ~~~~~~G--~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~ 74 (142)
T 3mr0_A 37 HFKKIMG--YEDHELPDEITGHRESIHPDDRARVLAALKA 74 (142)
T ss_dssp HHHHHTT--CCGGGSCSEEC---CCBCTTTHHHHHHHHHH
T ss_pred HHHHHhC--CCccccCCCHHHHHhhcCHHHHHHHHHHHHH
Confidence 4567788 55666665 467899999999999887753
No 57
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=84.23 E-value=0.26 Score=35.28 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=29.5
Q ss_pred hhhhhhCCcceeeeecC--CccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTG--SSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~G--qSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +...+++| ..+++++||+|.+.+.+.+.
T Consensus 35 ~~~~~~G--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 71 (125)
T 3nja_A 35 AVHDIFG--TDSATFDATEDAYFQRVHPDDRARVRRELD 71 (125)
T ss_dssp HHHHHHT--CCTTTCCCBHHHHHHHBCTTTHHHHHHHHH
T ss_pred HHHHHhC--CCcccccccHHHHHhhcChhHHHHHHHHHH
Confidence 4677889 56888888 88999999999999888775
No 58
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=79.33 E-value=1.7 Score=31.77 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=44.2
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecce----eeeEEEeeeeCCcEEEEEEEEEE
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQV----LTHYYRLMNKNGGYTWVQSCATV 173 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~----~t~~YR~l~K~G~wVWlqT~~~v 173 (294)
.|++++++.+.+..++||+..+++ ..+.. ....++++.|+|..+|+......
T Consensus 11 ~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~~ 90 (119)
T 2vv6_A 11 GHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLSIGE 90 (119)
T ss_dssp TTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEEEEEE
T ss_pred CCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEEEEEEEEE
Confidence 689999999999999999322211 11111 11236788999999999988777
Q ss_pred eecCCCCCcCcEEEEeEEec
Q psy17809 174 VCSSKNADEQNIICVNYVIS 193 (294)
Q Consensus 174 v~n~kn~~~e~IVcvn~vlS 193 (294)
+.+ .....+|++-.=|+
T Consensus 91 ~~~---~~~~~~~~~~~DIT 107 (119)
T 2vv6_A 91 MQS---GGEPYFTGFVRDLT 107 (119)
T ss_dssp EEE---TTEEEEEEEEEECC
T ss_pred EEE---CCeEEEEEEEEEcH
Confidence 654 22334555533343
No 59
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=78.45 E-value=1.9 Score=32.11 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=38.4
Q ss_pred cCceEEeeccccceeeccceeeEe------------------------eecce----eeeEEEeeeeCCcEEEEEEEEEE
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQVI------------------------NKGQV----LTHYYRLMNKNGGYTWVQSCATV 173 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~----~t~~YR~l~K~G~wVWlqT~~~v 173 (294)
.|++++++.+.+..++||+..+++ ..+.. ...-++++.|+|..+|+......
T Consensus 34 ~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~ 113 (130)
T 1d06_A 34 TDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGE 113 (130)
T ss_dssp TTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEE
T ss_pred CCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEE
Confidence 689999999999999999322211 11111 11236788999999999888777
Q ss_pred eec
Q psy17809 174 VCS 176 (294)
Q Consensus 174 v~n 176 (294)
+.+
T Consensus 114 ~~~ 116 (130)
T 1d06_A 114 MRS 116 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 60
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=75.78 E-value=0.94 Score=32.94 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=26.2
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELA 35 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~r 35 (294)
.+++.|| +..-|++|+++.+++++++.+...
T Consensus 27 aa~~l~G--~~~~el~g~~~~~l~~~~~~~~~~ 57 (114)
T 1ll8_A 27 KACGLLG--YSSQDLIGQKLTQFFLRSDSDVVE 57 (114)
T ss_dssp THHHHHT--CCTTTTTTSBGGGGSSCTTTHHHH
T ss_pred HHHHHhC--CCHHHHcCCCHHHhcCcchhHHHH
Confidence 4678899 779999999999999998876543
No 61
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=74.85 E-value=0.77 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=29.0
Q ss_pred hhhhhhCCcceeeeecCCc--cccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSS--VFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqS--VfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +..-+++|.. +++++||+|...+.+.+.
T Consensus 40 ~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T 3eeh_A 40 AYEDIWG--RSVAKLRENPHDFLNGIHPEDRELMKDTMQ 76 (125)
T ss_dssp HHHHHHS--SCHHHHHHCGGGGGGGBCHHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHccCcHHHHHhcCHHHHHHHHHHHH
Confidence 4677888 5588888887 899999999999887765
No 62
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.91 E-value=2.8 Score=30.04 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=36.0
Q ss_pred cCceEEeeccccceeeccceee----------------------Eeeeccee-eeEEEeeeeCCcEEEEEEEEEEeec
Q psy17809 122 SDGRFLYISETVSIYLGLSQWQ----------------------VINKGQVL-THYYRLMNKNGGYTWVQSCATVVCS 176 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGysH~~----------------------LL~KGQ~~-t~~YR~l~K~G~wVWlqT~~~vv~n 176 (294)
.+++++++.+.+..++||...+ ++..++.. ..-+++. ++|..+|+......+.+
T Consensus 25 ~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~pi~~ 101 (115)
T 3b33_A 25 DGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQSGQSITDSDVTFV-VDGRPLMLEVTVSPITW 101 (115)
T ss_dssp TTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEECCTHHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEEEEEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccchhhHHHHHHHHcCCcccCCceEEe-cCCCEEEEEEEEEEeec
Confidence 6899999999999999992111 11122222 1234555 78888998888877765
No 63
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=72.67 E-value=1.7 Score=31.42 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred cC-ceEEeeccccceeeccceeeEe------------------------e-eccee---eeEEEeeeeCCcEEEEEEEEE
Q psy17809 122 SD-GRFLYISETVSIYLGLSQWQVI------------------------N-KGQVL---THYYRLMNKNGGYTWVQSCAT 172 (294)
Q Consensus 122 lD-~kf~~~D~Rvs~~LGysH~~LL------------------------~-KGQ~~---t~~YR~l~K~G~wVWlqT~~~ 172 (294)
.+ ++|++|.+.+..++||+..+++ . .|... ...++++.|+|..+|+.....
T Consensus 16 ~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v~~~~~ 95 (114)
T 1ll8_A 16 AKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMK 95 (114)
T ss_dssp TTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEEECCEE
T ss_pred CCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEEEEEEEE
Confidence 56 9999999999999999211111 1 11111 123678899999999988776
Q ss_pred Eee
Q psy17809 173 VVC 175 (294)
Q Consensus 173 vv~ 175 (294)
.+.
T Consensus 96 ~~~ 98 (114)
T 1ll8_A 96 RMR 98 (114)
T ss_dssp CCB
T ss_pred eec
Confidence 664
No 64
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=71.92 E-value=0.78 Score=32.94 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=30.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +...+++|.++.++++++|...+.+.+.
T Consensus 27 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (126)
T 3mjq_A 27 AVPKKLG--YTHEELMSMHILTITSAGKMAEGEKILA 61 (126)
T ss_dssp HHHHHHS--CCHHHHHHSBHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHcCCCHHHHcCchhHHHHHHHHH
Confidence 4678899 6689999999999999999998877664
No 65
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=70.89 E-value=1.6 Score=32.48 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=27.9
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.++..+| +...|++|+++.+++++++.....+.+
T Consensus 44 a~~~l~G--y~~~eliG~~~~~l~~~~~~~~~~~~~ 77 (130)
T 1d06_A 44 AAVRQFG--YAEEEVIGQNLRILMPEPYRHEHDGYL 77 (130)
T ss_dssp HHHHHHC--CCHHHHTTSBGGGGSCTTHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHcCCcHHHHCCchhHHHHHHHH
Confidence 4678899 679999999999999999887665544
No 66
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=68.19 E-value=1.6 Score=30.40 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +..-|++|.++.+++|+++...+.+.+.
T Consensus 28 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 62 (115)
T 4eet_B 28 GFLELTE--YSREEILGRNARFLQGPETDQATVQKIR 62 (115)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred HHHHHHC--cCHHHHhCCCHHHhcCCCCChHHHHHHH
Confidence 4788899 6689999999999999998777666554
No 67
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=66.17 E-value=2.4 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.++..+| +...|++|+++.+++++++.......+
T Consensus 21 a~~~l~G--~~~~el~G~~~~~l~~~~~~~~~~~~~ 54 (119)
T 2vv6_A 21 AAERLFG--WSELEAIGQNVNILMPEPDRSRHDSYI 54 (119)
T ss_dssp HHHHHHC--CCHHHHTTSBGGGGSCTTHHHHHHHHH
T ss_pred HHHHHhC--CCHHHHcCCCHHHhCCchHHHHHHHHH
Confidence 4678899 779999999999999998876655443
No 68
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=63.27 E-value=3.4 Score=31.03 Aligned_cols=54 Identities=17% Similarity=0.393 Sum_probs=36.6
Q ss_pred ccCceEEeeccccceeeccceeeEe------------------------eecce----eeeEEEeeeeCCcEEEEEEEEE
Q psy17809 121 GSDGRFLYISETVSIYLGLSQWQVI------------------------NKGQV----LTHYYRLMNKNGGYTWVQSCAT 172 (294)
Q Consensus 121 PlD~kf~~~D~Rvs~~LGysH~~LL------------------------~KGQ~----~t~~YR~l~K~G~wVWlqT~~~ 172 (294)
-.|+++++|...+..++||...+++ ..+.. ...-+++..++|.++|+.....
T Consensus 57 d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 136 (167)
T 1v9y_A 57 NENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALS 136 (167)
T ss_dssp CTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEE
T ss_pred CCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEE
Confidence 3689999999999999999222111 11111 1225788899999999988777
Q ss_pred Ee
Q psy17809 173 VV 174 (294)
Q Consensus 173 vv 174 (294)
.+
T Consensus 137 ~~ 138 (167)
T 1v9y_A 137 KV 138 (167)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 69
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=63.14 E-value=2.2 Score=29.69 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +..-+++|.++++++ |+|.+.+++.+.
T Consensus 31 ~~~~~~g--~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 64 (114)
T 3luq_A 31 RWREDYG--LGDGDILGMSHYDIF-PEIGEEWKSVHR 64 (114)
T ss_dssp HHHHHTT--CCSSCCTTCBHHHHC-TTCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHcCCcHHHHC-CccHHHHHHHHH
Confidence 4678899 668999999999997 888887766554
No 70
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=61.05 E-value=2.6 Score=30.41 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=29.1
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +..-+++|.++.+++++++...+.+.+.
T Consensus 28 ~~~~l~g--~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 62 (128)
T 3t50_A 28 AFLKLTG--YEADEVMGRNCRFLQGHGTDPAHVRAIK 62 (128)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred HHHHHhC--cCHHHHcCCCHhhhcCCccCHHHHHHHH
Confidence 4778899 6689999999999999998877766654
No 71
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=60.16 E-value=7 Score=29.58 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=43.9
Q ss_pred cCceEEeeccccceeeccc----------------------eeeEeeecceeeeE-EEe--eeeC--CcEEEEEEEEEEe
Q psy17809 122 SDGRFLYISETVSIYLGLS----------------------QWQVINKGQVLTHY-YRL--MNKN--GGYTWVQSCATVV 174 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys----------------------H~~LL~KGQ~~t~~-YR~--l~K~--G~wVWlqT~~~vv 174 (294)
.|+++++|.+....++||. ...++..|+..... +++ ..+. |...|+......+
T Consensus 36 ~~~~i~~~N~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi 115 (158)
T 3k3c_A 36 PDHRFVAVNAAYRGFSPLLDTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPR 115 (158)
T ss_dssp TTTEEEEECHHHHHHCTTCCSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEE
T ss_pred CCcEeHHHHHHHHHHcCCchhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEe
Confidence 6899999999999999983 01122345443222 223 3223 6678888888777
Q ss_pred ecCCCCCcCcEEEEeEEecC
Q psy17809 175 CSSKNADEQNIICVNYVISG 194 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS~ 194 (294)
++. ++++..++++-.=|++
T Consensus 116 ~~~-~g~~~g~~~~~~DITe 134 (158)
T 3k3c_A 116 RRA-DGSIEGVQLIVDDVTS 134 (158)
T ss_dssp ECT-TSCEEEEEEEEEECHH
T ss_pred ECC-CCCEEEEEEEEEehhH
Confidence 763 3455566766554543
No 72
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=59.53 E-value=3.4 Score=30.17 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=25.8
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAE 36 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~re 36 (294)
.|++.+| +..-|++|+++.+++++++...+.+
T Consensus 33 a~~~~~G--~~~~elig~~~~~l~~~~~~~~~~~ 64 (120)
T 2gj3_A 33 AFRTITG--YGSEEVLGKNESILSNGTTPRLVYQ 64 (120)
T ss_dssp HHHHHHC--CCTTGGGGCBGGGGCCTTSCHHHHH
T ss_pred HHHHHHC--cCHHHHcCCCHHHcCCCCCCHHHHH
Confidence 4788899 6699999999999999887655433
No 73
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=56.56 E-value=1.2 Score=34.95 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=27.0
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQ 37 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQ 37 (294)
.++.-|| +...|++|+++.++++++|.+.+++.
T Consensus 35 aa~~l~G--~~~~el~G~~~~~l~~~~~~~~~~~~ 67 (129)
T 3mfx_A 35 RSAELLD--CPQVSLKGQDWRNFLTEHHQARYDNL 67 (129)
T ss_dssp HHHHHTT--SCHHHHTTSBGGGGBCTTCCGGGGCT
T ss_pred HHHHHHC--cCHHHHcCCcHHHHcChHhHHHHHHH
Confidence 4678899 67999999999999999987655433
No 74
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=53.25 E-value=4.1 Score=31.62 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=29.4
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.|+..+| +..-|++|.++.+++||+|...+.+.+.
T Consensus 38 a~~~~~G--~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 72 (176)
T 4hia_A 38 PFLRMTG--YTEGQILGFNCRFLQRGDENAQARADIR 72 (176)
T ss_dssp HHHHHHT--CCHHHHTTSCGGGGCCTTCCHHHHHHHH
T ss_pred HHHHHHC--cCHHHHcCCCcceeeCCCCCHHHHHHHH
Confidence 4778899 6689999999999999999887766654
No 75
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=52.75 E-value=3.8 Score=26.91 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.7
Q ss_pred cCceEEeeccccceeecc
Q psy17809 122 SDGRFLYISETVSIYLGL 139 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGy 139 (294)
.+++++++.+.+..++||
T Consensus 10 ~~g~i~~~N~~~~~l~g~ 27 (96)
T 3a0s_A 10 KDGRITEWNKKAEQLFGL 27 (96)
T ss_dssp TTSBEEEECHHHHHHHCC
T ss_pred CCCCEeehhHHHHHHhCC
Confidence 689999999999999999
No 76
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=50.10 E-value=5.2 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=27.4
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +...+++|.++++++++++...+.+.+.
T Consensus 37 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 71 (130)
T 2z6d_A 37 GFFTMTG--YSSKEIVGRNCRFLQGPDTDKNEVAKIR 71 (130)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred HHHHHhC--cCHHHHcCCChhhccCCCCCchHHHHHH
Confidence 4677888 5688999999999999988776655443
No 77
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=48.79 E-value=5.5 Score=30.10 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=28.4
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +..-+++|.++.+++|+++...+...+.
T Consensus 66 ~~~~l~G--~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 100 (166)
T 3ue6_A 66 GFLTLTG--YSLDQILGRNCRFLQGPETDPRAVDKIR 100 (166)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred HHHHHhC--cCHHHHcCCCHhheeCCCCCHHHHHHHH
Confidence 4778899 6688999999999999998776665553
No 78
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=48.01 E-value=5.8 Score=28.20 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=27.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++..+| +...+++|.++++++||++...+.+.+.
T Consensus 33 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 67 (146)
T 2v0u_A 33 SFLQLTE--YSREEILGRNCRFLQGPETDRATVRKIR 67 (146)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTSCHHHHHHHH
T ss_pred HHHHHHC--cCHHHHcCCCHHHhcCCcCChHHHHHHH
Confidence 4567788 5588999999999999999776655544
No 79
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=47.00 E-value=5.9 Score=29.61 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=22.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCccc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQAD 30 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~D 30 (294)
.+++.+| +..-|++|+++.+++||++
T Consensus 56 a~~~l~G--~~~~el~g~~~~~l~~~~~ 81 (149)
T 3d72_A 56 AFLYMTG--YSNAEVLGRNCRFLQSPDG 81 (149)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGGSTTS
T ss_pred HHHHHHC--cCHHHHcCCChhHhCCccc
Confidence 4678899 6689999999999999984
No 80
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=46.40 E-value=12 Score=29.84 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=41.6
Q ss_pred cCceEEeeccccceeeccc----------------------eeeEeeecceeeeE-EEe--eeeC--CcEEEEEEEEEEe
Q psy17809 122 SDGRFLYISETVSIYLGLS----------------------QWQVINKGQVLTHY-YRL--MNKN--GGYTWVQSCATVV 174 (294)
Q Consensus 122 lD~kf~~~D~Rvs~~LGys----------------------H~~LL~KGQ~~t~~-YR~--l~K~--G~wVWlqT~~~vv 174 (294)
.|++|++|.+....++||. ...++..|+..... +++ ..++ |...|+......+
T Consensus 56 ~~g~i~~~N~a~~~l~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi 135 (185)
T 3kx0_X 56 PDHRFVAVNAAYRGFSPLLDTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPR 135 (185)
T ss_dssp TTTEEEEECHHHHHHCCCCSCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred CCcEEEEEcHHHHHHcCCccccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEE
Confidence 6899999999999999983 01122345443322 333 3333 6678888887777
Q ss_pred ecCCCCCcCcEEEEeEEec
Q psy17809 175 CSSKNADEQNIICVNYVIS 193 (294)
Q Consensus 175 ~n~kn~~~e~IVcvn~vlS 193 (294)
++. +++...++++-.=|+
T Consensus 136 ~~~-~g~~~g~~~~~~DIT 153 (185)
T 3kx0_X 136 RRA-DGSIEGVQLIVDDVT 153 (185)
T ss_dssp ECT-TSCEEEEEEEEEECH
T ss_pred ECC-CCCEEEEEEEEEeCC
Confidence 753 344555666655454
No 81
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=44.56 E-value=8.3 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.|+..+| +..-|++|+++.+++||+|...+.+.+.
T Consensus 94 a~~~l~G--~~~~el~g~~~~~l~~~~~~~~~~~~~~ 128 (258)
T 3p7n_A 94 AFTDLTG--YSEEECVGRNCRFLAGSGTEPWLTDKIR 128 (258)
T ss_dssp HHHHHHC--CCGGGTTTSCGGGGCCTTCCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHCCCChhhccCCCCchhHHHHHH
Confidence 4788899 6799999999999999999887766654
No 82
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=44.12 E-value=7.2 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=25.9
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.|++.+| +..-|++|+++.++.||++.....+.+
T Consensus 30 a~~~~~G--~~~~el~g~~~~~l~~~~~~~~~~~~~ 63 (132)
T 2pr5_A 30 GFVQMTG--YETEEILGKNCRFLQGKHTDPAEVDNI 63 (132)
T ss_dssp HHHHHHS--CCHHHHTTSCGGGGCCTTCCHHHHHHH
T ss_pred HHHHHhC--cCHHHHcCCChhhhCCCCCCHHHHHHH
Confidence 4788899 679999999998888887655544333
No 83
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=43.06 E-value=11 Score=25.68 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=26.7
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+++.+| +...+++|.++..+.++++...+.+.+.
T Consensus 35 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (124)
T 3lyx_A 35 GSETLYG--YSKEQAIGQPVNMLHVPGDTEHITSEVI 69 (124)
T ss_dssp HHHHHHC--CCHHHHTTSBGGGGSCTTTHHHHHHHHH
T ss_pred HHHHHhC--CCHHHHcCCCHHHhcCcchhhHHHHHHH
Confidence 4677889 5588999999998878888777655543
No 84
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=42.98 E-value=7.2 Score=34.23 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.+++.+| +..-|++|+++.+++||+|..++.+.+
T Consensus 42 a~~~l~G--~~~~el~G~~~~~l~~~~~~~~~~~~~ 75 (332)
T 2wkq_A 42 SFLQLTE--YSREEILGRNARFLQGPETDRATVRKI 75 (332)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTCCHHHHHHH
T ss_pred HHHHHhC--CCHHHHcCCCchhhcCCCCCHHHHHHH
Confidence 4788899 679999999999999998866554443
No 85
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=41.15 E-value=13 Score=26.76 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=25.2
Q ss_pred hhhhhhCCcceeeee--cCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEM--TGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl--~GqSVfD~IHP~Dh~E~reQL 38 (294)
.+++.+| +..-|+ +|.++++++| |.+.+...+
T Consensus 45 a~~~~~G--~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 45 RFCAELG--YDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHT--CCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHhC--CCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 4678899 668899 6899999998 667676654
No 86
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=39.83 E-value=10 Score=26.91 Aligned_cols=30 Identities=7% Similarity=0.063 Sum_probs=22.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTEL 34 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~ 34 (294)
.+++.+| +..-+++|+++.+++++++...+
T Consensus 47 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~ 76 (125)
T 3fc7_A 47 SMAGRLG--ADPDTLVGQQLSAVMDSEAANQR 76 (125)
T ss_dssp HHHHHHT--SCHHHHTTSBGGGSSCHHHHHHH
T ss_pred HHHHHhC--CCHHHHcCccHHHhCCHHHHHHH
Confidence 4678899 66889999999999944444433
No 87
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=37.54 E-value=5.5 Score=29.27 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=25.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.+++.|| +..-+++|+++.+++.+.+...+.+.+
T Consensus 40 a~~~l~g--~~~~e~~G~~~~~~~~~~~~~~~~~~~ 73 (118)
T 3fg8_A 40 GCLRHVR--RSRDELLGRVVTEVLPETQGSYFDALC 73 (118)
T ss_dssp HHHHHHT--CCHHHHTTSBHHHHCGGGTTSHHHHHH
T ss_pred HHHHHhC--CCHHHHcCCcHHHHcCccchHHHHHHH
Confidence 4678899 668899999999999776655554433
No 88
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=37.50 E-value=7.3 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=24.4
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHh
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQL 38 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL 38 (294)
.++..+| +. +++|.++.+++++.+...+...+
T Consensus 46 ~~~~~~g--~~--~~~G~~~~~~~~~~~~~~~~~~~ 77 (158)
T 3k3c_A 46 AYRGFSP--LL--DTVGQPAREVYPELEGQQIYEML 77 (158)
T ss_dssp HHHHHCT--TC--CSTTSBHHHHSGGGGGTTHHHHH
T ss_pred HHHHHcC--Cc--hhcCCcHHHhCCchhHHHHHHHH
Confidence 4677889 44 99999999999998765544443
No 89
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=37.45 E-value=14 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=32.6
Q ss_pred chhhhhhCCcceeeeecCCccccccCcccHHHHHHHhcC
Q psy17809 2 ELFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGL 40 (294)
Q Consensus 2 ~~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~~ 40 (294)
+.+++.|| +.--+++|+++.++++|++.+.+++.|..
T Consensus 60 ~N~~~~lg--~~~~~llG~~l~~ll~~~~~~~l~~~l~~ 96 (337)
T 2ool_A 60 ANVEDLLR--QPPASLLNVPIAHYLTAASAARLTHALHG 96 (337)
T ss_dssp TTHHHHHS--SCGGGGTTCBGGGGBCHHHHHHHHHHHCC
T ss_pred hhHHHHHC--cCHHHHcCCCHHHHcCHHHHHHHHHHHhc
Confidence 46788999 66888999999999999999999998863
No 90
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=36.38 E-value=11 Score=27.16 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=22.7
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHT 32 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~ 32 (294)
.|++.+| +...|++|++...+.||++..
T Consensus 24 a~~~l~G--y~~~e~~G~~~~~l~~~~~~~ 51 (109)
T 1n9l_A 24 GFYAMTG--YGPDEVLGHNCRFLQGEGTDP 51 (109)
T ss_dssp HHHHHHC--CCHHHHTTSCGGGGCCTTCCH
T ss_pred HHHHHHC--cCHHHHcCCCchhcCCCCCCH
Confidence 4788899 679999999988887877643
No 91
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=36.38 E-value=11 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=27.6
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++..+| +...+++|..+.+++++++...+.+.+.
T Consensus 68 ~~~~l~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (167)
T 1v9y_A 68 AAEKLWG--YKREEVIGNNIDMLIPRDLRPAHPEYIR 102 (167)
T ss_dssp HHHHHHS--CCGGGTTTSBGGGGSCGGGTTTHHHHHH
T ss_pred HHHHHhC--CCHHHHcCCChhhccCccccchHHHHHH
Confidence 4677889 5688999999999999998776655443
No 92
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=33.11 E-value=10 Score=28.54 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=27.7
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.++..+| +...+++|..+.+++++++...+.+.+.
T Consensus 56 ~~~~~~g--~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 90 (162)
T 3sw1_A 56 AFEYLTG--YSRDEILYQDCRFLQGDDRDQLGRARIR 90 (162)
T ss_dssp HHHHHHT--CCHHHHTTSBGGGGTTTCCCCHHHHHHH
T ss_pred HHHHHHC--CCHHHHcCCCcceecCCCcCHHHHHHHH
Confidence 4677889 5688999999999999988776655543
No 93
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=27.44 E-value=23 Score=25.38 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=22.8
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccH-HHHHHH
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADH-TELAEQ 37 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh-~E~reQ 37 (294)
.+++-|| +..-|++|+++.+++++++. ..+.+.
T Consensus 30 a~~~l~G--~~~~el~g~~~~~~~~~~~~~~~~~~~ 63 (120)
T 3mqq_A 30 ELAAIFR--CARADLIGRSFEVLYPSSDEFERIGER 63 (120)
T ss_dssp HHHHHTT--SCHHHHTTCBGGGGSSSHHHHHHHHHH
T ss_pred HHHHHhC--cCHHHhCCCchhhccCChhhHHHHHHH
Confidence 4778899 66899999998876655332 344333
No 94
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=26.98 E-value=17 Score=29.48 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.4
Q ss_pred hhhhhhCCcceeeeecCCccccccCcccHHHHHHHhc
Q psy17809 3 LFEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLG 39 (294)
Q Consensus 3 ~~e~~LG~h~~QvDl~GqSVfD~IHP~Dh~E~reQL~ 39 (294)
.+|..+| +...|++|++++|++-. +.+.+++.+.
T Consensus 50 a~~~~~G--~~~~eviG~~~~~~~p~-~~~~~~~~l~ 83 (152)
T 3mxq_A 50 YFESRVI--FDGETMQGKNILELFPE-SADYLKRKID 83 (152)
T ss_dssp HHHHTSS--SCHHHHTTSBHHHHSGG-GHHHHHHHHH
T ss_pred HHHHHHC--cCHHHHCCCCHHHhcCC-hHHHHHHHHH
Confidence 4688899 77899999999998866 8777766554
No 95
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=25.49 E-value=17 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=22.4
Q ss_pred hhhhhCCcceeeeecCCccccccCcccH
Q psy17809 4 FEQHQGTHILQVEMTGSSVFDYIHQADH 31 (294)
Q Consensus 4 ~e~~LG~h~~QvDl~GqSVfD~IHP~Dh 31 (294)
.|.+-| +..-+++|+++|+.+.|+..
T Consensus 46 ~e~~sG--~~~~eviGk~~f~~~~~~~~ 71 (125)
T 1nwz_A 46 EGDITG--RDPKQVIGKNFFKDVAPCTD 71 (125)
T ss_dssp HHHHHC--CCHHHHTTSBCCCCCCGGGC
T ss_pred HHHHhC--CCHHHHcCCchhhhccchhc
Confidence 477889 77999999999999998763
No 96
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=24.13 E-value=19 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhhhhCCcceeeeecCCccccccCcccH
Q psy17809 4 FEQHQGTHILQVEMTGSSVFDYIHQADH 31 (294)
Q Consensus 4 ~e~~LG~h~~QvDl~GqSVfD~IHP~Dh 31 (294)
.|.+-| +..-+++|+++|+.+.|+..
T Consensus 51 ~e~isG--~s~eeviGk~~f~~~~p~~~ 76 (129)
T 1mzu_A 51 ESRLSG--RIPERVIGRNFFTEVAPCTN 76 (129)
T ss_dssp HHHHHC--CCHHHHTTSBCCCCCCGGGC
T ss_pred HHHHhC--CCHHHHcCCchhhhccchhc
Confidence 578889 77999999999999998763
Done!