RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17809
         (294 letters)



>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
           1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 109

 Score = 45.4 bits (107), Expect = 4e-07
 Identities = 8/69 (11%), Positives = 21/69 (30%)

Query: 125 RFLYISETVSIYLGLSQWQVINKGQVLTHYYRLMNKNGGYTWVQSCATVVCSSKNADEQN 184
            F         Y      +V+ +G   +  YR +  +G      +   +        +  
Sbjct: 40  AFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPF 99

Query: 185 IICVNYVIS 193
           I+ ++ +  
Sbjct: 100 IMGIHIIDR 108


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 24/105 (22%)

Query: 116 FAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHY--------------------- 154
           F      D +F Y  + ++  +G    +++ +     ++                     
Sbjct: 8   FLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVV 67

Query: 155 ---YRLMNKNGGYTWVQSCATVVCSSKNADEQNIICVNYVISGRE 196
              YR++ K+GGY W+++  TV+ + +N   Q I+CVNYV+S  E
Sbjct: 68  SGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIE 112


>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
           palustris [TaxId: 1076]}
          Length = 114

 Score = 29.0 bits (65), Expect = 0.23
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 115 GFAFAL-GSDGRFLYISETVSIYLGLSQWQVINK 147
           G+ F +  +D R   +S  V   L      ++N 
Sbjct: 18  GYLFVVSETDLRIASVSANVEDLLRQPPASLLNV 51



 Score = 27.9 bits (62), Expect = 0.54
 Identities = 5/31 (16%), Positives = 8/31 (25%)

Query: 11 HILQVEMTGSSVFDYIHQADHTELAEQLGLG 41
                +    +  Y+  A    L   L  G
Sbjct: 42 RQPPASLLNVPIAHYLTAASAARLTHALHGG 72


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 25.7 bits (56), Expect = 1.7
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 4  FEQHQGTHILQVEMTGSSVFDYIHQADHTELAEQLGLGLSQ 44
          F +   T IL           Y  +    ELA++ G+ +SQ
Sbjct: 8  FNKQA-TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQ 47


>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
           {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
          Length = 432

 Score = 27.4 bits (59), Expect = 2.5
 Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 1/64 (1%)

Query: 223 NNDPENDSPDADREDGRNSGDSRNHDHLSPPDIEDGTSEGDNSGDQRG-RNHLDHVTQLH 281
           N D  ND             + +        D     S     GD  G    L ++ +  
Sbjct: 23  NGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKTL 82

Query: 282 NIST 285
             + 
Sbjct: 83  GANI 86


>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 364

 Score = 26.6 bits (58), Expect = 4.4
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 178 KNADEQNIICVNYVISGREYENFIMDCCQ---LEDYIQQRGVKREE 220
              D   I+C++Y     +  +FI+D      L  ++ Q GV  E 
Sbjct: 62  STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEA 107


>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
           {Escherichia coli [TaxId: 562]}
          Length = 272

 Score = 25.4 bits (55), Expect = 7.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 104 HFKSSGYRSLDGFAFALGSDGRFLYISETVSIYLGLSQWQVINKGQVLTHYYRL 157
           H  +  YR L G     G++   + I + V +Y G   W  +N G+  T ++ L
Sbjct: 168 HGLTDKYRILRGIN--TGANHNVIDIRDKVHVYAGKEFWSWLNNGEAETQHWVL 219


>d1chda_ c.40.1.1 (A:) Methylesterase CheB, C-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 198

 Score = 25.2 bits (55), Expect = 8.4
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 156 RLMNKNGGYTWVQSCATVVCSS--KNADEQNIICVNYVIS 193
             M + G +T  Q+ A+ V     + A       V+ V+ 
Sbjct: 141 LAMYQAGAWTIAQNEASCVVFGMPREAINMG--GVSEVVD 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,136
Number of extensions: 48466
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 12
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)