BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17810
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24119|TRH_DROME Protein trachealess OS=Drosophila melanogaster GN=trh PE=1 SV=4
Length = 1022
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWSRD 41
MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPW+R+
Sbjct: 112 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWTRE 152
>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain-containing protein 3 OS=Mus musculus GN=Npas3
PE=2 SV=1
Length = 925
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 2/53 (3%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWS--RDGPSPSKSVKG 51
+LPLPAAITSQLDKASIIRLTISYLK+RDF+ GDPPW+ +GP P+ SVKG
Sbjct: 84 LLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKG 136
>sp|Q8IXF0|NPAS3_HUMAN Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3
PE=2 SV=1
Length = 933
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%), Gaps = 2/54 (3%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWS--RDGPSPSKSVKGI 52
+LPLPAAITSQLDKASIIRLTISYLK+RDF+ GDPPW+ +GP P+ SVK I
Sbjct: 77 LLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKVI 130
>sp|Q99742|NPAS1_HUMAN Neuronal PAS domain-containing protein 1 OS=Homo sapiens GN=NPAS1
PE=2 SV=2
Length = 590
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWSRDGPSP 45
+LPLP AI+SQLDKASI+RL+++YL+LR F+ G PPW P
Sbjct: 71 LLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRAAGP 115
>sp|P97459|NPAS1_MOUSE Neuronal PAS domain-containing protein 1 OS=Mus musculus GN=Npas1
PE=1 SV=1
Length = 594
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPW 38
+LPLP AI+SQLDKASI+RL+++YL+LR F+ G PPW
Sbjct: 71 LLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPW 108
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=Sim2 PE=1 SV=1
Length = 657
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPW---SRDGPSPSKSVKGIPHN 55
+LPLP+AITSQLDKASIIRLT SYLK+R G GD W SR GP S + + H
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLGD-AWGQPSRTGPLDSVAKELGSHL 84
Query: 56 LQ 57
LQ
Sbjct: 85 LQ 86
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=SIM2 PE=1 SV=2
Length = 667
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 35/48 (72%), Gaps = 6/48 (12%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPW---SRDGP 43
+LPLP+AITSQLDKASIIRLT SYLK+R G GD W SR GP
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLGD-AWGQPSRAGP 72
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLPAAITSQLDKAS+IRLT SYLK+R
Sbjct: 50 LLPLPAAITSQLDKASVIRLTTSYLKMR 77
>sp|P81133|SIM1_HUMAN Single-minded homolog 1 OS=Homo sapiens GN=SIM1 PE=2 SV=2
Length = 766
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLP+AITSQLDKASIIRLT SYLK+R
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMR 53
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLP+AITSQLDKASIIRLT SYLK+R
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMR 53
>sp|A1YFY6|SIM1_PANPA Single-minded homolog 1 OS=Pan paniscus GN=SIM1 PE=3 SV=1
Length = 766
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLP+AITSQLDKASIIRLT SYLK+R
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMR 53
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLP+AITSQLDKASIIRLT SYLK+R
Sbjct: 26 LLPLPSAITSQLDKASIIRLTTSYLKMR 53
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LPLP+AITSQ DKASIIRLT SYLK+R
Sbjct: 26 LLPLPSAITSQSDKASIIRLTTSYLKMR 53
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP ++S LDKAS++RLTISYL++R GD
Sbjct: 44 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGD 77
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP ++S LDKAS++RLTISYL++R GD
Sbjct: 44 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGD 77
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1
SV=1
Length = 826
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP ++S LDKAS++RLTISYL++R GD
Sbjct: 44 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGD 77
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a
PE=2 SV=1
Length = 825
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP ++S LDKAS++RLTISYL++R GD
Sbjct: 44 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGD 77
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A
PE=2 SV=1
Length = 819
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP ++S LDKAS++RLTISYL++R GD
Sbjct: 45 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAGD 78
>sp|Q98SW2|HIF1A_ONCMY Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss GN=hif1a
PE=2 SV=1
Length = 766
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDF 30
LPLP ++TS LDKASI+RL ISYL +R+
Sbjct: 44 LPLPHSVTSNLDKASIMRLAISYLHMRNL 72
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1
SV=3
Length = 836
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHG 34
LPLP ++S LDKAS++RLTISYL++R G
Sbjct: 44 LPLPHNVSSHLDKASVMRLTISYLRVRKLLDAG 76
>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1-alpha OS=Gallus gallus GN=HIF1A PE=2
SV=2
Length = 811
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LPLP +++ LDKASI+RLTISYL++R G+
Sbjct: 44 LPLPHTVSAHLDKASIMRLTISYLRMRKLLDAGE 77
>sp|O02747|AHR_RABIT Aryl hydrocarbon receptor OS=Oryctolagus cuniculus GN=AHR PE=2 SV=1
Length = 847
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWSRD---GPSPSKSVKGIPHNLQ 57
+LP P + ++LDK S++RL++SYL+ + F S D G P ++ G NLQ
Sbjct: 53 LLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSSADRNGGQDPCRAKFGEGLNLQ 112
Query: 58 EGQ 60
EG+
Sbjct: 113 EGE 115
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1
SV=2
Length = 669
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWSRDG 42
LP +++ LDKASI+RLTISYL++ G+ W++ G
Sbjct: 41 LPFARGVSAHLDKASIMRLTISYLRMHRLCAAGE--WNQVG 79
>sp|Q95LD9|AHR_DELLE Aryl hydrocarbon receptor OS=Delphinapterus leucas GN=AHR PE=2 SV=1
Length = 845
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPWSRDG---PSPSKSVKGIPHN 55
+LP P + ++LDK S++RL++SYL+ + F P R+G +K +G+ N
Sbjct: 53 LLPFPQDVVNKLDKLSVLRLSVSYLRAKSFFDVALKSTPADRNGVQDNCRTKFREGL--N 110
Query: 56 LQEGQ 60
LQEG+
Sbjct: 111 LQEGE 115
>sp|Q3U1U7|AHRR_MOUSE Aryl hydrocarbon receptor repressor OS=Mus musculus GN=Ahrr PE=1
SV=1
Length = 701
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPWSRDGPSPSK-SVKGIPHNLQ 57
+LP I S+LDK S++RL++SYL+++ F + WS SP + S +G P +Q
Sbjct: 51 LLPFSPDIISKLDKLSVLRLSVSYLRVKSFFQALQETCVWSAPALSPEEHSYRGFP--VQ 108
Query: 58 EGQ 60
EG+
Sbjct: 109 EGR 111
>sp|A9YTQ3|AHRR_HUMAN Aryl hydrocarbon receptor repressor OS=Homo sapiens GN=AHRR PE=2
SV=3
Length = 701
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P I S+LDK S++RL++SYL+++ F
Sbjct: 54 LLPFPPDIISKLDKLSVLRLSVSYLRVKSF 83
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1
SV=2
Length = 662
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LP +++ LDKASI+RLTISYL++ G+
Sbjct: 39 LPFARGVSAHLDKASIMRLTISYLRMHRLCAAGE 72
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2
Length = 848
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPWSRDGPSPSKSVKGIPH--NL 56
+LP P + ++LDK S++RL++SYL+ + F P R+G + NL
Sbjct: 53 LLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNCRAANFREGLNL 112
Query: 57 QEGQ 60
QEG+
Sbjct: 113 QEGE 116
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a
PE=1 SV=1
Length = 662
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGD 35
LP +++ LDKASI+RLTISYL++ G+
Sbjct: 39 LPFARGVSAHLDKASIMRLTISYLRMHRLCAAGE 72
>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1 OS=Homo sapiens
GN=EPAS1 PE=1 SV=3
Length = 870
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLK 26
LPLP +++S LDKASI+RL IS+L+
Sbjct: 41 LPLPHSVSSHLDKASIMRLAISFLR 65
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain-containing protein 1 OS=Rattus norvegicus
GN=Epas1 PE=2 SV=1
Length = 874
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLK 26
LPLP +++S LDKASI+RL IS+L+
Sbjct: 41 LPLPHSVSSHLDKASIMRLAISFLR 65
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
GN=Epas1 PE=1 SV=2
Length = 874
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLK 26
LPLP +++S LDKASI+RL IS+L+
Sbjct: 41 LPLPHSVSSHLDKASIMRLAISFLR 65
>sp|Q75NT5|AHRR_RAT Aryl hydrocarbon receptor repressor OS=Rattus norvegicus GN=Ahrr
PE=2 SV=1
Length = 701
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDPPWSRDGPSPS-KSVKGIPHNLQ 57
+LP I S+LDK S++RL++SYL+++ F + WS SP S +G P +Q
Sbjct: 51 LLPFSPDIISKLDKLSVLRLSVSYLRVKSFFQALQETCVWSAPALSPEDHSSRGFP--VQ 108
Query: 58 EGQ 60
EG+
Sbjct: 109 EGR 111
>sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster GN=sima PE=2 SV=2
Length = 1507
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 2 LPLPAAITSQLDKASIIRLTISYLKLRDF 30
LPL +QLDKAS++R+TI++LK+R+
Sbjct: 99 LPLKTDDVNQLDKASVMRITIAFLKIREM 127
>sp|P41738|AHR_RAT Aryl hydrocarbon receptor OS=Rattus norvegicus GN=Ahr PE=1 SV=2
Length = 853
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN=Ahr PE=1 SV=3
Length = 848
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr PE=2 SV=1
Length = 854
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr PE=2 SV=1
Length = 854
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus molossinus GN=Ahr PE=2
SV=1
Length = 883
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus castaneus GN=Ahr PE=2
SV=1
Length = 848
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus GN=Ahr PE=2 SV=1
Length = 854
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLRDF 30
+LP P + ++LDK S++RL++SYL+ + F
Sbjct: 52 LLPFPQDVINKLDKLSVLRLSVSYLRAKSF 81
>sp|P90953|HLH34_CAEEL Helix-loop-helix 34 OS=Caenorhabditis elegans GN=hlh-34 PE=2 SV=3
Length = 322
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 2 LPLPAAITSQ-LDKASIIRLTISYLKLRDFSGHGDPPWS 39
LPL AI+ Q +DK +++RL +Y+KL + G +S
Sbjct: 35 LPLARAISGQHIDKTTMVRLATAYIKLHNIFGQSQRAYS 73
>sp|O44712|AHR_CAEEL Aryl hydrocarbon receptor protein 1 OS=Caenorhabditis elegans
GN=ahr-1 PE=1 SV=1
Length = 602
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 1 MLPLPAAITSQLDKASIIRLTISYLKLR 28
+LP ++ S+LDK S++RL +S+L+ +
Sbjct: 44 LLPYDSSTISRLDKLSVLRLAVSFLQCK 71
>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1-alpha OS=Xenopus laevis GN=hif1a PE=2
SV=1
Length = 805
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 2 LPLPAAITSQLDKASIIRL 20
LPLP ++S LDKASI+RL
Sbjct: 44 LPLPHNVSSHLDKASIMRL 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,191,322
Number of Sequences: 539616
Number of extensions: 853882
Number of successful extensions: 1023
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 45
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)