Query psy17810
Match_columns 62
No_of_seqs 112 out of 191
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 23:37:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 98.3 4.6E-08 1.6E-12 58.8 -0.8 38 2-39 35-72 (73)
2 4f3l_A Mclock, circadian locom 98.0 1.6E-06 5.6E-11 60.8 2.3 31 1-34 37-67 (361)
3 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 1E-06 3.5E-11 62.8 0.3 29 1-29 38-66 (387)
4 4h10_B Circadian locomoter out 96.2 0.0014 4.6E-08 39.2 1.2 22 9-30 38-59 (71)
5 1nkp_B MAX protein, MYC proto- 91.9 0.075 2.5E-06 31.1 1.8 19 9-27 33-51 (83)
6 1an4_A Protein (upstream stimu 91.9 0.046 1.6E-06 30.7 0.8 18 10-27 41-58 (65)
7 1hlo_A Protein (transcription 91.9 0.077 2.6E-06 31.0 1.8 18 10-27 44-61 (80)
8 1am9_A Srebp-1A, protein (ster 90.5 0.11 3.8E-06 30.7 1.6 19 9-27 36-54 (82)
9 1mdy_A Protein (MYOD BHLH doma 90.4 0.18 6E-06 29.4 2.3 25 1-27 37-61 (68)
10 4ati_A MITF, microphthalmia-as 87.8 0.21 7.1E-06 31.5 1.5 20 8-27 59-78 (118)
11 1a0a_A BHLH, protein (phosphat 83.2 0.53 1.8E-05 26.7 1.5 17 10-26 39-55 (63)
12 1nkp_A C-MYC, MYC proto-oncoge 79.1 0.97 3.3E-05 27.0 1.8 18 10-27 39-56 (88)
13 2ql2_B Neurod1, neurogenic dif 75.7 1.5 5.2E-05 24.6 1.9 19 9-27 34-52 (60)
14 2lfh_A DNA-binding protein inh 64.2 3.7 0.00013 24.3 1.9 18 10-27 47-64 (68)
15 3u5v_A Protein MAX, transcript 50.0 7.9 0.00027 22.6 1.6 15 13-27 42-56 (76)
16 4ath_A MITF, microphthalmia-as 47.2 5.6 0.00019 24.2 0.7 19 9-27 25-43 (83)
17 4aya_A DNA-binding protein inh 35.5 20 0.00068 22.3 1.9 25 10-34 58-83 (97)
18 1nlw_A MAD protein, MAX dimeri 30.7 24 0.00082 20.5 1.6 18 10-27 34-51 (80)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.32 E-value=4.6e-08 Score=58.76 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCchHHhhccchhhhhHhhHHHHHHHHhhcCCCCCCC
Q psy17810 2 LPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWS 39 (62)
Q Consensus 2 LPlp~~v~s~LDKaSImRLtisyLr~r~~~~~~~~~w~ 39 (62)
+|......+++|||+|++.||.|||...+|..++.+|.
T Consensus 35 vP~~~~~~~KldKasIL~~tV~ylk~l~~~~~~~~~~~ 72 (73)
T 4h10_A 35 VPTCNAMSRKLDKLTVLRMAVQHMKTLRGAWLEHHHHH 72 (73)
T ss_dssp SHHHHTCSSCCCHHHHHHHHHHHHHHHSCC--------
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhcCcccCCccC
Confidence 44444456899999999999999999999999887663
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.05 E-value=1.6e-06 Score=60.77 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=26.7
Q ss_pred CCCCchHHhhccchhhhhHhhHHHHHHHHhhcCC
Q psy17810 1 MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHG 34 (62)
Q Consensus 1 lLPlp~~v~s~LDKaSImRLtisyLr~r~~~~~~ 34 (62)
||| +..++|||+||||+||+|||+++.+...
T Consensus 37 ~~p---~~~~~~dk~~il~~~~~~~~~~~~~~~~ 67 (361)
T 4f3l_A 37 MLP---GNARKMDKSTVLQKSIDFLRKHKETTAQ 67 (361)
T ss_dssp TCC---SSSCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCC---CCCCCcCHHHHHHHHHHHHHHHHhhccc
Confidence 466 4578999999999999999999998754
No 3
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.98 E-value=1e-06 Score=62.80 Aligned_cols=29 Identities=24% Similarity=0.514 Sum_probs=26.4
Q ss_pred CCCCchHHhhccchhhhhHhhHHHHHHHH
Q psy17810 1 MLPLPAAITSQLDKASIIRLTISYLKLRD 29 (62)
Q Consensus 1 lLPlp~~v~s~LDKaSImRLtisyLr~r~ 29 (62)
|||.+.++.++|||+||||+||+|||..+
T Consensus 38 l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 38 LVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp HCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 57888889999999999999999999766
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=96.23 E-value=0.0014 Score=39.21 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=18.6
Q ss_pred hhccchhhhhHhhHHHHHHHHh
Q psy17810 9 TSQLDKASIIRLTISYLKLRDF 30 (62)
Q Consensus 9 ~s~LDKaSImRLtisyLr~r~~ 30 (62)
...+||++|++.||.|+|.-+-
T Consensus 38 ~~K~dK~sIL~~aI~yik~Lq~ 59 (71)
T 4h10_B 38 ARKMDKSTVLQKSIDFLRKHKE 59 (71)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999986543
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=91.92 E-value=0.075 Score=31.08 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=16.9
Q ss_pred hhccchhhhhHhhHHHHHH
Q psy17810 9 TSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 9 ~s~LDKaSImRLtisyLr~ 27 (62)
...+||++|++.++.|++.
T Consensus 33 ~~k~sK~~iL~~Ai~YI~~ 51 (83)
T 1nkp_B 33 GEKASRAQILDKATEYIQY 51 (83)
T ss_dssp TSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999864
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=91.89 E-value=0.046 Score=30.67 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.9
Q ss_pred hccchhhhhHhhHHHHHH
Q psy17810 10 SQLDKASIIRLTISYLKL 27 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~ 27 (62)
..+||++|+..|+.|++-
T Consensus 41 ~k~~Ka~IL~~ai~YI~~ 58 (65)
T 1an4_A 41 SGQSKGGILSKASDYIQE 58 (65)
T ss_dssp TCCCTTTTTTTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 378999999999999864
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.86 E-value=0.077 Score=30.98 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=16.3
Q ss_pred hccchhhhhHhhHHHHHH
Q psy17810 10 SQLDKASIIRLTISYLKL 27 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~ 27 (62)
..++|++|++.++.|++.
T Consensus 44 ~k~sK~~iL~~Ai~YI~~ 61 (80)
T 1hlo_A 44 EKASRAQILDKATEYIQY 61 (80)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 589999999999999864
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=90.55 E-value=0.11 Score=30.67 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=16.7
Q ss_pred hhccchhhhhHhhHHHHHH
Q psy17810 9 TSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 9 ~s~LDKaSImRLtisyLr~ 27 (62)
...+||++|+.-||.|++-
T Consensus 36 ~~k~~Ka~IL~~Ai~YI~~ 54 (82)
T 1am9_A 36 EAKLNKSAVLRKAIDYIRF 54 (82)
T ss_dssp SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999863
No 9
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=90.38 E-value=0.18 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCCCchHHhhccchhhhhHhhHHHHHH
Q psy17810 1 MLPLPAAITSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 1 lLPlp~~v~s~LDKaSImRLtisyLr~ 27 (62)
++|.++ -.+|.|..|+|+++.|++.
T Consensus 37 ~iP~~~--~~KlSKi~tLr~Ai~YI~~ 61 (68)
T 1mdy_A 37 STSSNP--NQRLPKVEILRNAIRYIEG 61 (68)
T ss_dssp TSCSCT--TSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCC--CCCCCHHHHHHHHHHHHHH
Confidence 356544 3699999999999999864
No 10
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=87.83 E-value=0.21 Score=31.48 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=16.3
Q ss_pred HhhccchhhhhHhhHHHHHH
Q psy17810 8 ITSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 8 v~s~LDKaSImRLtisyLr~ 27 (62)
...++||++|+.-+|.|++-
T Consensus 59 ~~~k~~Ka~IL~~aieYIk~ 78 (118)
T 4ati_A 59 PDMRWNKGTILKASVDYIRK 78 (118)
T ss_dssp --CCCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 34589999999999999874
No 11
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=83.17 E-value=0.53 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=15.5
Q ss_pred hccchhhhhHhhHHHHH
Q psy17810 10 SQLDKASIIRLTISYLK 26 (62)
Q Consensus 10 s~LDKaSImRLtisyLr 26 (62)
+.+.||+|+..++.|++
T Consensus 39 ~k~sKa~iL~~Ai~YIk 55 (63)
T 1a0a_A 39 AAPSKATTVEAACRYIR 55 (63)
T ss_dssp CCSCTTHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHH
Confidence 57889999999999986
No 12
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.06 E-value=0.97 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=16.2
Q ss_pred hccchhhhhHhhHHHHHH
Q psy17810 10 SQLDKASIIRLTISYLKL 27 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~ 27 (62)
..+||++|++-++.|++-
T Consensus 39 ~K~sK~~iL~~A~~YI~~ 56 (88)
T 1nkp_A 39 EKAPKVVILKKATAYILS 56 (88)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 689999999999999863
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=75.71 E-value=1.5 Score=24.64 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.7
Q ss_pred hhccchhhhhHhhHHHHHH
Q psy17810 9 TSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 9 ~s~LDKaSImRLtisyLr~ 27 (62)
-.+|.|..|+|+++.|++.
T Consensus 34 ~~klSKi~tLr~Ai~YI~~ 52 (60)
T 2ql2_B 34 TQKLSKIETLRLAKNYIWA 52 (60)
T ss_dssp SSCCCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHH
Confidence 3689999999999999873
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=64.24 E-value=3.7 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.2
Q ss_pred hccchhhhhHhhHHHHHH
Q psy17810 10 SQLDKASIIRLTISYLKL 27 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~ 27 (62)
.+|-|.-++|++|.|+..
T Consensus 47 kKLSKiEtLr~Ai~YI~~ 64 (68)
T 2lfh_A 47 TQLSQVEILQRVIDYILD 64 (68)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 689999999999999864
No 15
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=49.96 E-value=7.9 Score=22.59 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.4
Q ss_pred chhhhhHhhHHHHHH
Q psy17810 13 DKASIIRLTISYLKL 27 (62)
Q Consensus 13 DKaSImRLtisyLr~ 27 (62)
-|.+|++.++.|++-
T Consensus 42 sK~~IL~~AieYI~~ 56 (76)
T 3u5v_A 42 TKLLILQQAVQVILG 56 (76)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 466799999999863
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=47.24 E-value=5.6 Score=24.25 Aligned_cols=19 Identities=16% Similarity=0.552 Sum_probs=16.3
Q ss_pred hhccchhhhhHhhHHHHHH
Q psy17810 9 TSQLDKASIIRLTISYLKL 27 (62)
Q Consensus 9 ~s~LDKaSImRLtisyLr~ 27 (62)
-....|++|++-|+.|++-
T Consensus 25 ~~k~nKg~IL~ksvdYI~~ 43 (83)
T 4ath_A 25 DMRWNKGTILKASVDYIRK 43 (83)
T ss_dssp TCCCSHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 4578999999999999863
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=35.48 E-value=20 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.6
Q ss_pred hccchhhhhHhhHHHHHHHH-hhcCC
Q psy17810 10 SQLDKASIIRLTISYLKLRD-FSGHG 34 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~r~-~~~~~ 34 (62)
.+|-|.-++|+++.|++.=. +++..
T Consensus 58 kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 58 KKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 68899999999999987544 55543
No 18
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.72 E-value=24 Score=20.52 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.5
Q ss_pred hccchhhhhHhhHHHHHH
Q psy17810 10 SQLDKASIIRLTISYLKL 27 (62)
Q Consensus 10 s~LDKaSImRLtisyLr~ 27 (62)
....|++|++-++.|++-
T Consensus 34 ~k~sk~~iL~kA~~yI~~ 51 (80)
T 1nlw_A 34 SRHTTLSLLTKAKLHIKK 51 (80)
T ss_dssp CCCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 577899999999999863
Done!