RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17810
         (62 letters)



>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
          transcription-activato; 2.27A {Mus musculus}
          Length = 387

 Score = 61.2 bits (148), Expect = 2e-13
 Identities = 7/39 (17%), Positives = 22/39 (56%)

Query: 1  MLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWS 39
          ++P   A++ +LDK +++R+ + ++K    + +     +
Sbjct: 38 LVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEAN 76


>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH,
          PAS, circadian rhythm proteins, transcription-activato;
          2.27A {Mus musculus}
          Length = 361

 Score = 52.3 bits (125), Expect = 3e-10
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 1  MLPLPAAITSQLDKASIIRLTISYLKLRD-FSGHGDPPWSRDGPSPS 46
          MLP       ++DK+++++ +I +L+     +   D    R    P+
Sbjct: 37 MLP---GNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPT 80


>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose-
          binding protein, sugar binding protein, hormone
          receptor; HET: MAL; 1.80A {Homo sapiens}
          Length = 84

 Score = 24.4 bits (52), Expect = 2.2
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 13 DKASIIRLTISYLKLRDFSGHGDPPWSRDGPSPSKSVKGIP 53
          D  S+ R    Y   R    +    W +D P  SKS+K IP
Sbjct: 43 DTDSMSRRQTFYSNNRS-PTNSTGMW-KDSPKSSKSIKFIP 81


>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
           {Mycobacterium tuberculosis}
          Length = 330

 Score = 24.3 bits (53), Expect = 2.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 29  DFSGHGDPPWSRDG 42
           D  GHG   W  DG
Sbjct: 112 DLPGHGHSAWREDG 125


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 19  RLTISYLKLRDFSGHGDPPWSRDGPSPSKSVKGIPHN-LQE 58
             ++    L D   + +       PSP  S+  +    +Q+
Sbjct: 316 NTSLPPSILEDSLENNE-----GVPSPMLSISNLTQEQVQD 351


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 911,990
Number of extensions: 38048
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)