RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17810
         (62 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 26.8 bits (59), Expect = 0.065
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 4  LPAAITSQLDKASIIRLTISYLK 26
            +    +L K  I+R  I Y++
Sbjct: 38 TSSNPNQRLPKVEILRNAIRYIE 60


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 26.6 bits (59), Expect = 0.076
 Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 1  MLPLPAAITSQLDKASIIRLTISYLK 26
          ++       +++ K+ ++R  I Y+K
Sbjct: 14 LVM---GTDAKMHKSGVLRKAIDYIK 36


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 25.9 bits (57), Expect = 0.13
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 10 SQLDKASIIRLTISYLK 26
          S   K  I+     Y++
Sbjct: 41 SGQSKGGILSKASDYIQ 57


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 26.0 bits (57), Expect = 0.16
 Identities = 3/17 (17%), Positives = 8/17 (47%)

Query: 10 SQLDKASIIRLTISYLK 26
           +  +A I+     Y++
Sbjct: 34 EKASRAQILDKATEYIQ 50


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 24.9 bits (54), Expect = 0.36
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 4  LPAAITSQLDKASIIRLTISYLK 26
          L     ++L+K++++R  I Y++
Sbjct: 31 LVVGTEAKLNKSAVLRKAIDYIR 53


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 23.7 bits (51), Expect = 1.2
 Identities = 3/17 (17%), Positives = 8/17 (47%)

Query: 10 SQLDKASIIRLTISYLK 26
          S+    S++     ++K
Sbjct: 34 SRHTTLSLLTKAKLHIK 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,883
Number of extensions: 7417
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 6
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)