BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17815
(599 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 12/207 (5%)
Query: 7 LENGIPQGSSLSPLLFIIFLNDL----LKIIKLPLRSML--FIDDLLIISRGKDLSAILG 60
+ G+PQGS L PLL+ +F DL + P +++L + DD+ ++ +
Sbjct: 637 MRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAAR 696
Query: 61 RFQTTLNAIKTWSDTNGLIFSADPQKSV--CVDFTRLRSRSVPLTLYYSDKELKFVDKTK 118
Q L + W I +PQK++ C L + P+ L L + K
Sbjct: 697 GLQEYLTTLAAWCKR--WILKVNPQKTINPCFTLKTLSPVTAPIEL--EGVILDQPSQAK 752
Query: 119 FLGLIWDSKLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYG 178
+LG+ D +L++GPH++ R M L+ + N+ + + +Y V+PI YG
Sbjct: 753 YLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIWLYG 812
Query: 179 SSIYSSAKDHIINKLNPVHHNGIRIAT 205
I+ A N++ + + +R T
Sbjct: 813 IQIWGIAAKSNYNRIQVLQNRAMRAIT 839
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 105/244 (43%), Gaps = 9/244 (3%)
Query: 6 PLENGIPQGSSLSPLLFIIFLNDLLKIIKLPLRSMLFIDDLLIISRGKDLSAILGRFQTT 65
P+ G PQGS P ++ I ++ LL+ ++ + + DDLL++ G + + +
Sbjct: 627 PVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQL 686
Query: 66 LNAIKTWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWD 125
++ ++TW G S K+V + + R P T+ ++ + L +V ++LG+
Sbjct: 687 MSIVETWGAEVGDCLST--SKTV-IMLLKGALRRAP-TVRFAGRNLPYVRSCRYLGITVS 742
Query: 126 SKLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSSIYSSA 185
+ + H+ ++ R + L V ++G + +Y ++P + +G+ ++
Sbjct: 743 EGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT 802
Query: 186 KDHIINKLNPVHHNGIRIATGAL---RSSPVQSLYAESNIPPLSVRRDKLLFNYVVKIYG 242
+ + + + I G L R+ +L PPL + L Y +K G
Sbjct: 803 AEQVAAQRRLASCQRL-ILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLK-RG 860
Query: 243 CPLN 246
PL
Sbjct: 861 FPLE 864
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 6 PLENGIPQGSSLSPLLFIIFLNDL---LKIIKLPLRSML---FIDDLLIISRGKDLSAIL 59
P+ G+PQGS L P L+ +F +D+ + ++ +L + DD ++++ K + A
Sbjct: 637 PIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAAT 696
Query: 60 GRFQTTLNAIKTWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKF 119
Q L+A + W++ + +A+ K V F R+ S P + + + ++ K+
Sbjct: 697 SGLQEYLDAFQQWAENWNVRINAE--KCANVTFAN-RTGSCP-GVSLNGRLIRHHQAYKY 752
Query: 120 LGLIWDSKLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGS 179
LG+ D KL++ H+ ++ + + + L + +Y+S ++P + YG
Sbjct: 753 LGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGL 812
Query: 180 SIYSSAKDHIINKLNPVHHNGIRIATGALRSSPVQSLYAESNIPPLSVRRDKLLFNYVVK 239
+Y A +NK+ + +R +GA + + + +P L + + Y+ +
Sbjct: 813 QVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMER 872
Query: 240 I 240
+
Sbjct: 873 L 873
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 3/174 (1%)
Query: 10 GIPQGSSLSPLLFIIFLNDLL-KIIKLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNA 68
G PQGS P ++ + +N+LL ++ + F DD I+ SA+ L
Sbjct: 604 GCPQGSKSGPAMWKLVMNELLLALVAAGFFIVAFADDGTIVIGANSRSALEELGTRCLQL 663
Query: 69 IKTWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSKL 128
W + SA K+ C+ S + P + + + + + K LG+ ++
Sbjct: 664 CHEWGKRVCVPVSAG--KTTCILMKGHLSANRPPCIRLNGTSISYKSEVKHLGIFVAERM 721
Query: 129 SWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSSIY 182
++ PH Y++ + L + L+ V K++GL R+ LY+ + YG+S++
Sbjct: 722 NFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRATCILYKGLFVACMSYGASVW 775
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 10 GIPQGSSLSPLLFIIFLNDLLKI-IKLPLRSML--FIDDLLIISRGKDLSAILGRFQTTL 66
G+PQGS L PLL+ ++ +D+ + + L +SML F DD+ + R + Q
Sbjct: 639 GVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFA 698
Query: 67 NAIKTWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDS 126
W+ + ++ +VC R P +Y + + + K+LG++ D
Sbjct: 699 YRFSEWARRWNIGINSSKSNNVCFTL----KRRTPPPVYIEEVPVPQPNAAKYLGVLLDR 754
Query: 127 KLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSSIYSSAK 186
+L++ HV +++R + + + L L +Y+ ++P YG I+ A
Sbjct: 755 RLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLAC 814
Query: 187 DHIINKLNPVHHNGIRIATG 206
D I ++ + + R+ TG
Sbjct: 815 DSHIKRIQAIQNKVARLITG 834
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 337
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 10 GIPQGSSLSPLLFIIFLNDLL-KIIKLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNA 68
G PQGS P ++ + +N LL ++ + R + + DDL+I++ G + +
Sbjct: 1 GCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANGNSRMEMERMADECMRI 60
Query: 69 IKTWSDTNGLIFSADPQKSVC--------VDFTRLRSRSVPLTLYYSDKELKFVDKTKFL 120
+ W G+ S +K+VC VD R+R T+ + +V ++L
Sbjct: 61 VYEWGREVGVSIS--EKKTVCIMLKGKLNVDGRRMRVAVAEGTI----SSIGYVKSARYL 114
Query: 121 GLIWDSKLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSS 180
G+ ++S+ + + ++ + A+ L+ V K +G+ ++T + + + YGSS
Sbjct: 115 GVCMGERMSFADDIRGLITKVMGAIGGLRRVMRKEWGVKKKTAYTWAKGLLLAGVMYGSS 174
Query: 181 IY 182
++
Sbjct: 175 VW 176
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 10 GIPQGSSLSPLLFIIFLNDLL-KIIKLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNA 68
G PQGS P+L+ + +N +L ++ + F DD+ I++ G + +
Sbjct: 1 GCPQGSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEI 60
Query: 69 IKTWSDTNGLIFSADPQKSVC-------VDFTRLRSRSVPLTLYYSDKELKFVDKTKFLG 121
+ W + G+ S +K+VC V R S + +Y K +K+V ++LG
Sbjct: 61 VYKWGEKMGV--SVSEEKTVCMLLKGKYVTSNRAVRVSKTINVY---KRIKYVSCFRYLG 115
Query: 122 LIWDSKLSWGPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSSI 181
+ + +G HV +K + + LK V +++GL R + + P + Y +S
Sbjct: 116 VNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQVSYCASA 175
Query: 182 Y 182
+
Sbjct: 176 W 176
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 7 LENGIPQGSSLSPLLFIIFLNDLL---KIIKLPLRSML---FIDDLLIISRGKDLSAILG 60
+E G+PQGS L P L+ IF D+ + L +L + DD+ ++++ +
Sbjct: 638 IEAGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLIATYADDIAVLTKSTCIVEATD 697
Query: 61 RFQTTLNAIKTWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFL 120
Q L+A + W+ + +A K V FT R P + + L + K+L
Sbjct: 698 ALQEYLDAFQEWAVKWNVSINAG--KCANVTFTNA-IRDCP-GVTINGSLLSHTHEYKYL 753
Query: 121 GLIWDSKLSWGPHVEYVK---SRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSPIIDY 177
G+I D L++ H+ ++ + MN L NK L +K+Y+ V+P + Y
Sbjct: 754 GVILDRSLTFRRHITSLQHSFRTRITKMNWLLAARNK---LSLDNKVKIYKCIVAPGLFY 810
Query: 178 GSSIYSSAKDHIINKLNPVHHNGIRIATGA 207
+Y A +NK+ + +R +GA
Sbjct: 811 AIQVYGIAARTHLNKIRVLQAKMLRKISGA 840
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 42 FIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGLIFSADPQKSVCVDFT---RLRSR 98
F DDLL++ +G + + L+ + + G+ S K+VC+ + +R
Sbjct: 4 FADDLLLLVQGNRRNELEQSASEALSVVYRYGTNIGVEVS--DSKTVCMMLKGSLNMLNR 61
Query: 99 SVPL-TLYYSDKELKFVDKTKFLGLIWDSKLSWGPHVEYVKSRALNAMNVLKIVSNKNYG 157
V + T DK ++ VD+ ++LG+ + + H++ +K R A+ L+ V K++G
Sbjct: 62 VVHVSTNGMDDKRIRCVDRVRYLGVNVGIGMDFSVHIDGMKRRLTTAIMRLRGVLRKSWG 121
Query: 158 LHRQTLLKLYQSYVSPIIDYGSSIY 182
L R + + + P + YG+S++
Sbjct: 122 LKRGVVSMVVKGLFLPAVMYGASVW 146
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 27/279 (9%)
Query: 42 FIDDLLIISRG-------KDLSAILGRFQTTLNAIK---TWSDTNGLIFSADPQ----KS 87
F DDL ++ G K A++ +AIK + S T G IF P+ K+
Sbjct: 2 FADDLAVLVEGDSRAEIEKVGKAVVKHIVERCSAIKLEVSESKTVG-IFVKKPKVVGSKA 60
Query: 88 VCVDFTRLRSRSVP-LTLYYSDKELKFVDKTKFLGLIWDSKLSWGPHVEYVKSRALNAMN 146
V ++ R L + K + F ++LG+ +D+ L H +Y++ + + +
Sbjct: 61 VKINRKDCRKGGARNLKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFS 120
Query: 147 VLKIVSNKNYGLHRQTLLKLYQSYVSPIIDYGSSIYSSAKDHIINKLNPVHHNGIRIATG 206
L+ ++ +GL + L +Y+ P + Y S+ + H L +H + T
Sbjct: 121 DLRKLAQCQWGLGHKALETIYKGVFVPTVCYASARWYKEGAHTDRILEDLHRQILIAITR 180
Query: 207 ALRSSPVQSLYAESNIPPLSVRRDKLLFNYVVKIYGCPLNPMHKILFGNVDSFNITPNKP 266
RS+ ++ + P+ ++ L V K + L G V + +P
Sbjct: 181 CYRSTSYEAACVLAGTLPICIQ----LRVSVAKYH---LRKGEDAEIGGV----VIRRRP 229
Query: 267 LPLKIRFNCIREVSAVLKNTKVVPYSQGFPPWYSDFPVV 305
LK +N + EV+ + + QG FP V
Sbjct: 230 EGLKENYNRVLEVANEMWQARWEASEQGNATRELFFPDV 268
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 341 FTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCD 400
+ DGS+ + A Y + K I+ S AE+ AL+ L + ++N I+ D
Sbjct: 598 YIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEVQALLLALKA--GSEEMN--IITD 653
Query: 401 SMSALTSIANKNTSIPLIAHILNTWH-TLKSCGKKVAFL--WCPSHTGISGNEIVDR 454
S L +I N+ + + W L+ KK+A W P H GI GNE VD+
Sbjct: 654 SQYIL-NILNQQPDL-----MEGLWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVDK 704
>sp|Q11075|YWV1_CAEEL Uncharacterized protein B0403.1 OS=Caenorhabditis elegans
GN=B0403.1 PE=4 SV=1
Length = 198
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 115 DKTKFLGLIWDSKLSWGPHVEYVKSRA-LNAMNVLKIVSNKNYGLHRQTLLKLYQSYVSP 173
+K L + D KL++ H+EYV + A L +L+ N L+ KLY YV P
Sbjct: 8 NKVNDLDIFVDCKLNFQKHIEYVSNSAFLKCRQLLRCFRFTNVSLY----FKLYNVYVQP 63
Query: 174 IIDYGSSIYSSAKDHIINKL 193
+++YG +Y+ +I L
Sbjct: 64 LLNYGCEVYNPNSKRLIKLL 83
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT--SIPLIAHILNTWHTLKSCG 432
AEL+A++ L K VN IV DS AL I+++ T P++ I+ +
Sbjct: 1063 AELMAILLALQDSKE--TVN--IVTDSQYALGVISSQPTQSESPIVQQIIEE----LTKK 1114
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
++V W P+H GI GNE +D+
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDK 1136
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 341 FTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCD 400
+ DG + + + A Y + K +++ S AE+ AL+ L + ++N I+ D
Sbjct: 599 YIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEIQALLLALKA--GSEEMN--IITD 654
Query: 401 SMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFL--WCPSHTGISGNEIVDR 454
S + I + + I L+ KK A W P H GI GNE VD+
Sbjct: 655 SQYVINIILQQPDMMEGIWQ-----EVLEELEKKTAIFIDWVPGHKGIPGNEEVDK 705
>sp|P04025|POL_SRV1 Pol polyprotein OS=Simian retrovirus SRV-1 GN=pol PE=3 SV=1
Length = 867
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 326 FLQVVS-SKFNNSFICFTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCL 384
F Q++S + NN+ + FTDGS +T A Y N+NS EL AL+ L
Sbjct: 448 FPQIISKTPLNNALLVFTDGS----STGMAAYTLADTTIKFQTNLNSAQLVELQALIAVL 503
Query: 385 DSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFLWCP--- 441
+ N+P +N I DS SI T + I HI T C + + P
Sbjct: 504 SAFPNQP-LN--IYTDSAYLAHSIPLLET-VAQIKHISETAKLFLQCQQLIYNRSIPFYI 559
Query: 442 ----SHTGI-----SGNEIVDRATRQLDGAEFVNLSS 469
+H+G+ GN+ D AT+ + NL S
Sbjct: 560 GHVRAHSGLPGPIAHGNQKADLATKTVASNINTNLES 596
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 432
AEL A+ L +RP+VN IV DS AL I + + L+ I+ +K
Sbjct: 1064 AELHAIQLALQD--SRPEVN--IVTDSQYALGIIQAQPDRSGSELVNQIIE--QLIKK-- 1115
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
+KV W P+H GI GNE VD+
Sbjct: 1116 EKVYLSWVPAHKGIGGNEQVDK 1137
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 341 FTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCD 400
+ DG + + + A Y + K ++ S AE+ AL+ L K P+ I+ D
Sbjct: 599 YIDGGRKLGKAAKAAYWTDTGKWQVMELEGSNQKAEIQALLLAL---KAGPE-EMNIITD 654
Query: 401 SMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFL--WCPSHTGISGNEIVDR 454
S + ++ + + I L+ KK A W P H GI GNE VD+
Sbjct: 655 SQYMINILSQQPDKMEGIWQ-----EVLEELEKKTAIFIDWVPGHKGIPGNEEVDK 705
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCG 432
AEL+A++ L K + VN IV DS L I+++ T P++ I+ +
Sbjct: 1065 AELMAVLIALQDSKEQ--VN--IVTDSQYVLGIISSQPTQSDSPIVQQIIEE----LTKK 1116
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
++V W P+H GI GNE +D+
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDK 1138
>sp|P07572|POL_MPMV Pol polyprotein OS=Mason-Pfizer monkey virus GN=pol PE=3 SV=1
Length = 867
Score = 39.3 bits (90), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 326 FLQVVS-SKFNNSFICFTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCL 384
F Q++S + NN+ + FTDGS +T A Y N+NS EL AL+ L
Sbjct: 448 FPQIISKTPLNNALLVFTDGS----STGMAAYTLTDTTIKFQTNLNSAQLVELQALIAVL 503
Query: 385 DSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFLWCP--- 441
+ N+P +N I DS SI T + I HI T C + + P
Sbjct: 504 SAFPNQP-LN--IYTDSAYLAHSIPLLET-VAQIKHISETAKLFLQCQQLIYNRSIPFYI 559
Query: 442 ----SHTGI-----SGNEIVDRATRQLDGAEFVNLSS 469
+H+G+ GN+ D AT+ + NL S
Sbjct: 560 GHVRAHSGLPGPIAQGNQRADLATKIVASNINTNLES 596
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 298 WYSDFPVVDLSLCKSKKSETSPLILQSEFLQVVSSKFNNSFICFTDGSKT-IQNTSCAVY 356
W+ D+ +S + ++PL+++ + +V + + DG+ + + A Y
Sbjct: 1010 WWQDY--WQVSWIPEWEFVSTPLLVKL-WYSLVKEPIKGEDVYYVDGAASKVTKLGKAGY 1066
Query: 357 AGGSAKSYILNNINSI-FTAELLALVFCLDSVKNRPDVNTLIVCDS---MSALTSIANKN 412
KS I N+ AEL A+ L+ N IV DS M+ LT+ ++
Sbjct: 1067 LSERGKSRIRELENTTNQQAELTAVKMALEDSGE----NVNIVTDSQYVMNILTACPQES 1122
Query: 413 TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
S PL+ I+ +K ++V W P+H GI GN +D+
Sbjct: 1123 NS-PLVEQIIQA--LMKK--RQVYLQWVPAHKGIGGNTEIDK 1159
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 341 FTDGS---KTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLI 397
+TDGS + + + V G K +L + AEL A F L + P VN I
Sbjct: 1050 YTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTN-QQAELEA--FALALTDSEPQVN--I 1104
Query: 398 VCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRA 455
+ DS + IA + T P++A I+ +K + V W P+H G+ GN+ VD
Sbjct: 1105 IVDSQYVMGIIAAQPTETESPIVAKIIE--EMIKK--EAVYVGWVPAHKGLGGNQEVDHL 1160
Query: 456 TRQ 458
Q
Sbjct: 1161 VSQ 1163
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 432
AEL A+ L +R +VN IV DS AL I + + L+ I+ +K
Sbjct: 1062 AELQAIQLALQD--SRSEVN--IVTDSQYALGIIQAQPDRSEAELVNQIIE--QLIKK-- 1113
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
+KV W P+H GI GNE VD+
Sbjct: 1114 EKVYLSWVPAHKGIGGNEQVDK 1135
>sp|Q9FZ96|PUP1_ARATH Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1
Length = 356
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 303 PVVDLSLCKSKKSETSPLILQSEFLQVVSSKFNNSFICFTDGS-KTIQNTSCAVYAGGSA 361
P+V+L+ K+++ T PL+L+ + + +++ F F G K I + GGS
Sbjct: 192 PLVELTYKKARQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGSV 251
Query: 362 KSYILNNINSI----FTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPL 417
Y L I I F + +VFC S+ + ++ L+ + A+ K +
Sbjct: 252 FYYALIVITGIIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKG 311
Query: 418 IAHILNTW 425
++ +L+ W
Sbjct: 312 VSLLLSLW 319
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 339 ICFTDGS---KTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNT 395
+ + DG+ ++ + + + G + L N + AEL A+ L+ + P VN
Sbjct: 1052 VYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTN-QQAELTAIKMALED--SGPKVN- 1107
Query: 396 LIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFL-WCPSHTGISGNEI 451
IV DS M LT+ ++ S PL+ I+ + K+ +L W P+H GI GNE
Sbjct: 1108 -IVTDSQYAMGILTAQPTQSDS-PLVEQII-----AQMVQKEAIYLQWVPAHKGIGGNEE 1160
Query: 452 VDR 454
+D+
Sbjct: 1161 IDK 1163
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 20/125 (16%)
Query: 341 FTDGSKT-IQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC 399
+TDG K + + V + G K L + AE +A+ L+ +++ VN IV
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTRDK-QVN--IVT 678
Query: 400 DSMSALTSIAN-------KNTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIV 452
DS +I +N P+I +I + V F W P H GI GN++
Sbjct: 679 DSYYCWKNITEGLGLEGPQNPWWPIIQNIREK--------EIVYFAWVPGHKGIYGNQLA 730
Query: 453 DRATR 457
D A +
Sbjct: 731 DEAAK 735
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 341 FTDGSKT-IQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC 399
+TDG K + + V + G K L + AE +A+ L+ +++ VN IV
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTRDK-QVN--IVT 679
Query: 400 DSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK--VAFLWCPSHTGISGNEIVDRATR 457
DS +I + L W +++ +K V F W P H GI GN++ D A +
Sbjct: 680 DSYYCWKNITE---GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 341 FTDGSKT-IQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVC 399
+TDG K + + V + G K L + AE +A+ L+ +++ VN IV
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTRDK-QVN--IVT 679
Query: 400 DSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK--VAFLWCPSHTGISGNEIVDRATR 457
DS +I + L W +++ +K V F W P H GI GN++ D A +
Sbjct: 680 DSYYCWKNITE---GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCG 432
AEL+A+ L+ + P+VN IV DS A+ + + T PLI I+ L
Sbjct: 1091 AELMAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDSPLIEQII----ALMVQK 1142
Query: 433 KKVAFLWCPSHTGISGNEIVDRATRQ 458
++ W P+ GI GNE +D+ Q
Sbjct: 1143 HQIYLQWVPADKGIGGNEEIDKLVSQ 1168
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 20/124 (16%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDS---MSALTSIANKNTSIPLIAHILNTWHTLKSC 431
A+L A+ L+ + P+VN IV DS M LT+ ++ S PL+ I+ L
Sbjct: 1093 AKLTAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDS-PLVEQII----ALMIQ 1143
Query: 432 GKKVAFLWCPSHTGISGNEIVDR-ATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWS 490
+++ W P+H GI GNE +D+ ++ + F+ A + HE++ +W
Sbjct: 1144 KQQIYLQWVPAHKGIGGNEEIDKLVSKGIRRVLFLEKIEEA-------QEKHERYHNNWK 1196
Query: 491 DLTN 494
+L +
Sbjct: 1197 NLAD 1200
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 432
AEL A++ L DVN IV DS A+ I ++ + L++ I+ +K
Sbjct: 1074 AELQAILMALQESGR--DVN--IVTDSQYAMGIIHSQPDKSESELVSQIIE--ELIKK-- 1125
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
++V W P+H GI GNE VD+
Sbjct: 1126 ERVYLSWVPAHKGIGGNEQVDK 1147
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1
SV=1
Length = 1260
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 3 RSFPLENGIPQGSSLSPLLFIIFLNDL------------LKIIKLPLRSMLFIDDLLI-I 49
+SFPL +G QG LSPLLF I + L + I ++ LF DD+++ +
Sbjct: 648 KSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYL 707
Query: 50 SRGKDLSAILGRFQTTLNAIKTWSDTNGLIFSADPQKSVCVDFT 93
+D + L L IK +S+ +G + + KSV +T
Sbjct: 708 ENTRDSTTKL------LEVIKEYSNVSG--YKINTHKSVAFIYT 743
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK 434
AEL A L + P VN ++ + + + T P++ I+ +K +K
Sbjct: 1085 AELEAFALALQD--SGPQVNIIVDSQYVMGIVAAQPTETESPIVREIIE--EMIKK--EK 1138
Query: 435 VAFLWCPSHTGISGNEIVDRATRQ 458
+ W P+H G+ GN+ VD Q
Sbjct: 1139 IYVGWVPAHKGLGGNQEVDHLVSQ 1162
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 36.2 bits (82), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 326 FLQVVSSKFNNSFICFTDGS---KTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVF 382
+ Q+ + + + DG+ +T + V G K L + T EL A+
Sbjct: 1014 WYQLETEPIEGAETYYVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKT-ELQAIYL 1072
Query: 383 CLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWC 440
L ++ P+VN IV DS AL I + + L+ I+ +K +K W
Sbjct: 1073 ALQ--ESGPEVN--IVTDSQYALGIIQAQPDKSESELVNQIIE--ELIKK--EKFYLSWV 1124
Query: 441 PSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDL 492
P+H GI GNE VD+ G V D V + H W+ SD
Sbjct: 1125 PAHKGIGGNEQVDKLVS--SGIRKVLFLDGIDKAQVQHEKYHSNWRAMASDF 1174
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VDR
Sbjct: 1083 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDR 1138
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1083 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1138
Query: 455 ATRQ-------LDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNN 495
Q LDG + HEK+ +W + ++
Sbjct: 1139 LVSQGIRKVLFLDGIDKAQEE-------------HEKYHNNWRAMASD 1173
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1079 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1134
Query: 455 ATRQ-------LDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNN 495
Q LDG + HEK+ +W + ++
Sbjct: 1135 LVSQGIRKVLFLDGIDKAQEE-------------HEKYHNNWRAMASD 1169
>sp|Q37976|AEPE_BPA18 L-alanyl-D-glutamate peptidase OS=Listeria phage A118 GN=ply PE=2
SV=2
Length = 281
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 89 CVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSKLSW---GPHVEY 136
+DF + ++V Y SDK KFV K K LG W S PH+++
Sbjct: 71 ALDFVMAKGKTVDWGAYRSDKGKKFVAKAKSLGFEWGGDWSGFVDNPHLQF 121
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 397 IVCDSMSALTSIANKNTSI--PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS + +A++ T P++ I+ L +K+ W P+H GI GNE +D+
Sbjct: 1091 IVTDSQYVVGILASRPTETDHPIVKEIIE----LMKGKEKIYLSWLPAHKGIGGNEQIDK 1146
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 375 AELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCG 432
AEL A+ L +V IV DS AL I + + ++ I+ +K
Sbjct: 1063 AELQAIQLALQD----SEVEVNIVTDSQYALGIIQGQPDTSESEIVNQIIE--ELIKK-- 1114
Query: 433 KKVAFLWCPSHTGISGNEIVDR 454
+KV W P+H GI GNE +D+
Sbjct: 1115 EKVYLSWVPAHKGIGGNEQIDK 1136
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 26/108 (24%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L+ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1082 IVTDSQYALGIIQAQPDKSESELVNQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1137
Query: 455 ATRQ-------LDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNN 495
Q LDG + HEK+ +W + ++
Sbjct: 1138 LVSQGIRKVLFLDGIDKAQEE-------------HEKYHNNWRAMASD 1172
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1082 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1137
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE VD+
Sbjct: 1084 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNEQVDK 1139
>sp|Q49622|NADA_MYCLE Quinolinate synthase A OS=Mycobacterium leprae (strain TN) GN=nadA
PE=3 SV=2
Length = 352
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 426 HTLKSCGKKVAFLW---CPSHTGISGNEIVDRATRQLDGAEFVN 466
H + G+K ++W C H GI+G+E+VD+A D FV+
Sbjct: 187 HVRRVTGRKNVYVWMGECHVHAGINGDELVDQARANPDAELFVH 230
>sp|B8ZR90|NADA_MYCLB Quinolinate synthase A OS=Mycobacterium leprae (strain Br4923)
GN=nadA PE=3 SV=1
Length = 352
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 426 HTLKSCGKKVAFLW---CPSHTGISGNEIVDRATRQLDGAEFVN 466
H + G+K ++W C H GI+G+E+VD+A D FV+
Sbjct: 187 HVRRVTGRKNVYVWMGECHVHAGINGDELVDQARANPDAELFVH 230
>sp|Q6P882|ZB8AL_XENTR Zinc finger and BTB domain-containing protein 8A.2 OS=Xenopus
tropicalis GN=zbtb8a.2 PE=2 SV=1
Length = 455
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 382 FCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFLWCP 441
FC +VK + D+ ++C + + H+ + + T+ GK + WC
Sbjct: 303 FCTHTVKRKADLKRHLLCHTGERPYPCQACGKRFTRLEHVRSHYRTIHEAGKPIC-RWCK 361
Query: 442 SHTGISGNEIVDRATRQL 459
H ++V TR+
Sbjct: 362 RHVTEDSGQVVQEGTRRF 379
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 397 IVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 454
IV DS AL I + + L++ I+ +K +KV W P+H GI GNE
Sbjct: 1082 IVTDSQYALGIIQAQPDKSESELVSQIIE--QLIKK--EKVYLAWVPAHKGIGGNE---- 1133
Query: 455 ATRQLDGAEFVNLSSPADLISVGK-KYIHEKWQKSWSDLTNN 495
Q+DG + L + K + HEK+ +W + ++
Sbjct: 1134 ---QVDGLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASD 1172
>sp|O84771|MIAA_CHLTR tRNA dimethylallyltransferase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=miaA PE=3 SV=2
Length = 314
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 444 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 489
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 231 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 282
>sp|B0BAM1|MIAA_CHLTB tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=miaA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 444 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 489
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
>sp|B0B8Z2|MIAA_CHLT2 tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=miaA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 444 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 489
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
>sp|Q3KKS6|MIAA_CHLTA tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=miaA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 444 TGISGNEIVDRATRQLDGAEFVNLSSPADLISVGK-KYIHEKW-----QKSW 489
GI GN RA + EF++L SP DL + K K+I W Q++W
Sbjct: 256 AGIKGNSSASRAIGYREWIEFLDLGSPPDLFEITKQKFITNTWRYTKKQRTW 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,869,969
Number of Sequences: 539616
Number of extensions: 9204443
Number of successful extensions: 19939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 19913
Number of HSP's gapped (non-prelim): 75
length of query: 599
length of database: 191,569,459
effective HSP length: 123
effective length of query: 476
effective length of database: 125,196,691
effective search space: 59593624916
effective search space used: 59593624916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)