Query psy17815
Match_columns 599
No_of_seqs 278 out of 2185
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 23:44:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zd1_A Reverse transcriptase/r 99.9 3.8E-21 1.3E-25 210.6 19.0 117 334-459 436-557 (557)
2 1mu2_A HIV-2 RT; HIV-2 reverse 99.9 6.6E-21 2.3E-25 208.6 20.0 118 334-460 433-555 (555)
3 2qkb_A Ribonuclease H1, HS-RNA 99.8 5E-21 1.7E-25 173.6 13.0 125 334-463 4-152 (154)
4 3h08_A RNH (ribonuclease H); R 99.8 3.2E-20 1.1E-24 166.8 10.8 119 336-462 3-144 (146)
5 2kq2_A Ribonuclease H-related 99.8 6.4E-21 2.2E-25 170.9 5.8 127 334-464 3-139 (147)
6 3qio_A GAG-POL polyprotein; RN 99.8 7.8E-20 2.7E-24 164.0 12.6 125 333-462 8-147 (150)
7 3p1g_A Xenotropic murine leuke 99.8 9.7E-20 3.3E-24 165.5 10.3 120 337-463 23-157 (165)
8 1jl1_A Ribonuclease HI; RNAse 99.8 1.8E-19 6E-24 163.3 11.0 121 337-465 4-146 (155)
9 2e4l_A Ribonuclease HI, RNAse 99.8 1.7E-19 5.8E-24 163.8 10.7 119 336-462 5-145 (158)
10 1ril_A Ribonuclease H; hydrola 99.8 4.8E-19 1.6E-23 162.0 7.9 121 336-464 7-150 (166)
11 2lsn_A Reverse transcriptase; 99.7 1.3E-17 4.4E-22 151.2 6.8 121 336-461 6-162 (165)
12 3hst_B Protein RV2228C/MT2287; 99.7 2.9E-16 9.8E-21 140.1 12.7 122 337-463 3-134 (141)
13 3u3g_D Ribonuclease H, RNAse H 99.7 2.2E-16 7.7E-21 140.6 9.5 121 337-462 3-137 (140)
14 2ehg_A Ribonuclease HI; RNAse 99.6 1.9E-15 6.6E-20 136.0 9.3 117 338-463 2-135 (149)
15 1zbf_A Ribonuclease H-related 99.0 3.1E-10 1.1E-14 99.7 5.1 115 335-453 9-138 (142)
16 3kyl_A Telomerase reverse tran 99.0 2.8E-10 9.6E-15 116.5 5.4 72 5-89 300-375 (596)
17 4htu_A Ribonuclease H, RNAse H 98.6 9.4E-08 3.2E-12 82.2 7.2 95 335-431 3-112 (134)
18 3fsi_A RT, reverse transcripta 98.4 3.7E-07 1.3E-11 89.3 8.5 87 10-127 164-253 (255)
19 1rw3_A POL polyprotein; RNA an 97.9 9.3E-06 3.2E-10 86.3 6.0 87 10-127 168-257 (455)
20 2zd1_B P51 RT; P51/P66, hetero 97.7 2.5E-05 8.5E-10 82.1 5.9 88 9-127 147-237 (428)
21 1xr5_A Genome polyprotein; RNA 81.2 0.85 2.9E-05 48.0 3.4 74 4-89 278-361 (466)
22 1ra6_A P3D, genome polyprotein 76.0 2.3 7.8E-05 44.6 4.8 76 4-91 279-364 (461)
23 1rw3_A POL polyprotein; RNA an 73.1 1.2 4E-05 46.8 1.7 73 335-411 344-428 (455)
24 3uqs_A RNA-dependent RNA polym 65.7 3.5 0.00012 43.7 3.4 74 4-89 291-377 (515)
25 3alr_A Nanos protein; zinc-fin 59.3 3 0.0001 33.0 1.0 25 543-567 72-98 (106)
26 2zd1_B P51 RT; P51/P66, hetero 34.4 59 0.002 33.3 6.5 69 335-404 322-399 (428)
27 1khv_A RNA-directed RNA polyme 29.2 74 0.0025 33.5 6.3 76 4-89 299-390 (516)
28 2ckw_A RNA-directed RNA polyme 29.0 61 0.0021 34.1 5.6 76 4-89 291-383 (515)
29 1y63_A LMAJ004144AAA protein; 28.0 44 0.0015 29.4 3.7 38 41-78 147-184 (184)
30 2lnd_A De novo designed protei 26.0 1E+02 0.0035 23.0 4.6 63 418-481 37-99 (112)
31 2z3g_A Blasticidin-S deaminase 24.5 93 0.0032 25.9 4.9 52 349-401 27-80 (130)
32 3bso_A RNA dependent RNA polym 24.0 68 0.0023 33.7 4.8 73 4-89 291-377 (510)
33 2nx8_A TRNA-specific adenosine 23.3 1.2E+02 0.004 26.9 5.5 50 350-399 37-90 (179)
34 1go4_E MAD1 (mitotic arrest de 20.5 2.1E+02 0.0072 22.6 5.7 34 59-94 28-63 (100)
35 2a8n_A Cytidine and deoxycytid 20.3 1.4E+02 0.0047 25.2 5.2 28 372-399 51-78 (144)
No 1
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.86 E-value=3.8e-21 Score=210.64 Aligned_cols=117 Identities=26% Similarity=0.348 Sum_probs=88.0
Q ss_pred CCCceEEEecCCCCCC--CeeEEEE-eCCcceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhhc
Q psy17815 334 FNNSFICFTDGSKTIQ--NTSCAVY-AGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN 410 (599)
Q Consensus 334 ~~~~~~i~tDgS~~~~--~~G~~~~-~~~~~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~~ 410 (599)
..+.+.||||||...+ ..|+|++ ..+....... ..++++.||+.|+..||+.+ ..++.|+|||+++++.+.+
T Consensus 436 ~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 436 IVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp CTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 3467999999997653 3677776 3332222232 46889999999999999999 6789999999999999998
Q ss_pred CCCC--hHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHh
Q psy17815 411 KNTS--IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQL 459 (599)
Q Consensus 411 ~~~~--~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a 459 (599)
.... .++.+++. ..+.+ ...|.|.|||||+|++|||.||+||++|
T Consensus 511 ~~~~~~~~l~~~~~---~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 511 QPDKSESELVNQII---EQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCSEESSHHHHHHH---HHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCccCCHHHHHHHH---HHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 6543 35555544 33333 3589999999999999999999999986
No 2
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.86 E-value=6.6e-21 Score=208.62 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=90.3
Q ss_pred CCCceEEEecCCCCCC--CeeEEEE-eCCcceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhhc
Q psy17815 334 FNNSFICFTDGSKTIQ--NTSCAVY-AGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN 410 (599)
Q Consensus 334 ~~~~~~i~tDgS~~~~--~~G~~~~-~~~~~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~~ 410 (599)
.++.+.||||||...+ ..|+|++ ..+....... ..++++.||+.|+..||+. ...++.|+|||+++++.+.+
T Consensus 433 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 433 IPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 3457999999998753 3678877 2222223333 3678999999999999998 37899999999999999997
Q ss_pred CCC--ChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhc
Q psy17815 411 KNT--SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLD 460 (599)
Q Consensus 411 ~~~--~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~ 460 (599)
... ..++.+++.+ .+. .+..|.|.|||||+|++|||.||+||++|+
T Consensus 508 ~~~~~~~~l~~~~~~---~~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTESESKIVNQIIE---EMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSEESCHHHHHHHH---HHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHH---Hhc-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 543 2355555442 322 357899999999999999999999999884
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.85 E-value=5e-21 Score=173.55 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=96.4
Q ss_pred CCCceEEEecCCCCCCC-----eeEEEEeC-C--cceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHH
Q psy17815 334 FNNSFICFTDGSKTIQN-----TSCAVYAG-G--SAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSAL 405 (599)
Q Consensus 334 ~~~~~~i~tDgS~~~~~-----~G~~~~~~-~--~~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~ 405 (599)
..+.+.||||||...++ .|+|++.. + ...+..++...+++.||+.|+..||+.+...+..++.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 35678999999986532 78998832 2 1234556557899999999999999999887778999999999999
Q ss_pred HHhhcC---------C-------CChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCC
Q psy17815 406 TSIANK---------N-------TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAE 463 (599)
Q Consensus 406 ~~l~~~---------~-------~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~ 463 (599)
+.|... . ....+.++|. .+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~----~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALE----RLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHH----HHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHH----HHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 999862 1 1113344443 3333 46799999999999999999999999998765
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.82 E-value=3.2e-20 Score=166.76 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=89.8
Q ss_pred CceEEEecCCCCCC--CeeEEEE--eCCcc--eeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhh
Q psy17815 336 NSFICFTDGSKTIQ--NTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 409 (599)
Q Consensus 336 ~~~~i~tDgS~~~~--~~G~~~~--~~~~~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~ 409 (599)
+.++||||||...+ ..|+|++ .++.. .+..+ ...+++.||+.|+..||+.+.+ ..++.|+|||++++..|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 46899999997763 4788877 33322 22233 3688999999999999999976 689999999999999998
Q ss_pred cC-----------------CCChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccC
Q psy17815 410 NK-----------------NTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 462 (599)
Q Consensus 410 ~~-----------------~~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 462 (599)
.. .....+.+.+...+. . ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~----~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT----L-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH----H-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh----h-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 72 111244555543322 2 469999999999999999999999999864
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.82 E-value=6.4e-21 Score=170.93 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=96.8
Q ss_pred CCCceEEEecCCCCCCCeeEEEE--eCCcc--eee-ec--CC--cccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHH
Q psy17815 334 FNNSFICFTDGSKTIQNTSCAVY--AGGSA--KSY-IL--NN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSA 404 (599)
Q Consensus 334 ~~~~~~i~tDgS~~~~~~G~~~~--~~~~~--~~~-~l--~~--~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a 404 (599)
+++.+.||||||...+.+|+|++ .++.. .+. .. +. ..+++.||+.|+..||+++.+.+. ++.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 35678999999998877899977 34432 222 22 22 368999999999999998877555 99999999988
Q ss_pred HHHhhcCCCC-hHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCCC
Q psy17815 405 LTSIANKNTS-IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEF 464 (599)
Q Consensus 405 ~~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 464 (599)
..-+.+.... .+......+.+..|.. .|.|.|||||+|++|||.||+|||+|+....
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 8777664433 3444455544555533 8999999999999999999999999998764
No 6
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.82 E-value=7.8e-20 Score=163.97 Aligned_cols=125 Identities=24% Similarity=0.271 Sum_probs=90.6
Q ss_pred cCCCceEEEecCCCCC--CCeeEEEEe-CCcceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhh
Q psy17815 333 KFNNSFICFTDGSKTI--QNTSCAVYA-GGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 409 (599)
Q Consensus 333 ~~~~~~~i~tDgS~~~--~~~G~~~~~-~~~~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~ 409 (599)
+.++.+.||||||... +..|+|++. .+......+ ...+++.||++|+..||+.+ ..++.|+|||+++++.|.
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 4566799999999765 336778762 222223333 46899999999999999996 589999999999999998
Q ss_pred cC-----------CCChHH-HHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccC
Q psy17815 410 NK-----------NTSIPL-IAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 462 (599)
Q Consensus 410 ~~-----------~~~~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 462 (599)
.. ....++ -+++...+..+..+...|.|.|||||+|++|||.||+||++|+..
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 63 111111 122222222222357899999999999999999999999999865
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.80 E-value=9.7e-20 Score=165.53 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=90.7
Q ss_pred ceEEEecCCCCC--CCeeEEEE--eCCc-ceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhhcC
Q psy17815 337 SFICFTDGSKTI--QNTSCAVY--AGGS-AKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK 411 (599)
Q Consensus 337 ~~~i~tDgS~~~--~~~G~~~~--~~~~-~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~~~ 411 (599)
.+.||||||... |..|+|++ .++. .........+++++||++|+..||+++. ..++.|+|||+++++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE---GKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB---TSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc---CceEEEEEchHHHHhhhhcc
Confidence 589999999863 44667754 3333 2233455678999999999999999992 68999999999999998422
Q ss_pred CCC-----hHHHHHHHHHHHHhhhCCceEEEEEeCCCCC-----CCcchhHHHHHHHhccCC
Q psy17815 412 NTS-----IPLIAHILNTWHTLKSCGKKVAFLWCPSHTG-----ISGNEIVDRATRQLDGAE 463 (599)
Q Consensus 412 ~~~-----~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~g-----i~gNe~AD~~Ak~a~~~~ 463 (599)
... ..+.+++. ..+. ++..|.|.|||||+| ++|||.||+|||+|+...
T Consensus 100 ~~g~~v~n~dl~~~l~---~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 100 SEGREIKNKNEILALL---KALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp CCSCCCSSHHHHHHHH---HHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHH---HHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 211 23333332 3333 568999999999999 999999999999998765
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.80 E-value=1.8e-19 Score=163.27 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=91.7
Q ss_pred ceEEEecCCCCCC--CeeEEEE--eCCcc--eeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhhc
Q psy17815 337 SFICFTDGSKTIQ--NTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN 410 (599)
Q Consensus 337 ~~~i~tDgS~~~~--~~G~~~~--~~~~~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~~ 410 (599)
.+.||||||...+ ..|+|++ ..+.. .+..+ ...+++.||+.|+..||+.+.+ ..++.|+|||++++..|..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5899999998753 4688877 33321 22233 3578999999999999999976 4799999999999999986
Q ss_pred --------CC--------CChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCCCC
Q psy17815 411 --------KN--------TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFV 465 (599)
Q Consensus 411 --------~~--------~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~~ 465 (599)
.. ....+.+.+. .+.. ...|.|.|||||+|++|||.||+||++|+..+..
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~----~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLD----AALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHH----HHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHH----HHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 11 1123333333 3333 3689999999999999999999999999987643
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.79 E-value=1.7e-19 Score=163.82 Aligned_cols=119 Identities=21% Similarity=0.251 Sum_probs=90.5
Q ss_pred CceEEEecCCCCC--CCeeEEEE--eCCcc--eeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhh
Q psy17815 336 NSFICFTDGSKTI--QNTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 409 (599)
Q Consensus 336 ~~~~i~tDgS~~~--~~~G~~~~--~~~~~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~ 409 (599)
..+.||||||... +..|+|++ .++.. .+..+ ...+++.||+.|+..||+.+.. ..++.|+|||++++..|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 4689999999875 34688877 33322 22233 3578999999999999999865 389999999999999998
Q ss_pred c--------CC--------CChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccC
Q psy17815 410 N--------KN--------TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 462 (599)
Q Consensus 410 ~--------~~--------~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 462 (599)
. .. ....+.+.+. .+.. +..|.|.|||||+|++|||.||+||++|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~----~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLD----KAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHH----HHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHH----HHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 7 21 1123444443 3333 3689999999999999999999999999987
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.76 E-value=4.8e-19 Score=162.04 Aligned_cols=121 Identities=22% Similarity=0.163 Sum_probs=91.1
Q ss_pred CceEEEecCCCCCC--CeeEEEE--eCCcc--eeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHhh
Q psy17815 336 NSFICFTDGSKTIQ--NTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 409 (599)
Q Consensus 336 ~~~~i~tDgS~~~~--~~G~~~~--~~~~~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l~ 409 (599)
..+.||||||...+ ..|+|++ .++.. .+... ...+++.||+.|+..||+.+.. ..++.|+|||++++..|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHh
Confidence 46899999998753 4788877 23321 12222 3578999999999999999876 358999999999999998
Q ss_pred c----------CCC-------ChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCCC
Q psy17815 410 N----------KNT-------SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEF 464 (599)
Q Consensus 410 ~----------~~~-------~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 464 (599)
. ... ...+.+.+. .+.. ...|.|.|||||+|.+|||.||+|||+|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~----~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALL----LAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHH----HHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHH----HHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 111 123444443 3333 359999999999999999999999999998764
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.70 E-value=1.3e-17 Score=151.24 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=84.5
Q ss_pred CceEEEecCCCCCC-------CeeEEEEe--CCc----ceeeec-CCcccchhHHHHHHHHHHHHhhcCCCCcEEEEecc
Q psy17815 336 NSFICFTDGSKTIQ-------NTSCAVYA--GGS----AKSYIL-NNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 401 (599)
Q Consensus 336 ~~~~i~tDgS~~~~-------~~G~~~~~--~~~----~~~~~l-~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs 401 (599)
..++||||||...+ ..|+|++. .+. ...+.. ....+...||+.|+..||+.+... ..+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeCh
Confidence 45899999997653 27899872 221 112222 235667888888888888877654 4579999999
Q ss_pred HHHHHHhhcC-----------C-----CChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCC------CcchhHHHHHHHh
Q psy17815 402 MSALTSIANK-----------N-----TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGI------SGNEIVDRATRQL 459 (599)
Q Consensus 402 ~~a~~~l~~~-----------~-----~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi------~gNe~AD~~Ak~a 459 (599)
+++++.+... . ...++.+.+. .+......|.|.|||||+|+ +|||.||+||++|
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~----~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~g 160 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIA----ECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQG 160 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHH----HHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHH----HHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHh
Confidence 9999999641 1 1123444443 22233467999999999996 5899999999999
Q ss_pred cc
Q psy17815 460 DG 461 (599)
Q Consensus 460 ~~ 461 (599)
+.
T Consensus 161 A~ 162 (165)
T 2lsn_A 161 SY 162 (165)
T ss_dssp HH
T ss_pred hh
Confidence 84
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.67 E-value=2.9e-16 Score=140.12 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=94.6
Q ss_pred ceEEEecCCCCCC--CeeEEEE--eC--Cc-c--eeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHH
Q psy17815 337 SFICFTDGSKTIQ--NTSCAVY--AG--GS-A--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTS 407 (599)
Q Consensus 337 ~~~i~tDgS~~~~--~~G~~~~--~~--~~-~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~ 407 (599)
.+.||||||...+ ..|+|++ .. +. . .+..+ ...+++.||+.|+..||+++.+.+..++.|+|||+.+++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 4799999998753 5788877 32 21 1 12233 3689999999999999999998777899999999999999
Q ss_pred hhcCC-CChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCC
Q psy17815 408 IANKN-TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAE 463 (599)
Q Consensus 408 l~~~~-~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~ 463 (599)
+.+.. ..++....+...+..+..+...|.|.|||+ ++||.||+|||+|....
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 99853 334444455555666766678999999995 89999999999987553
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.65 E-value=2.2e-16 Score=140.60 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred ceEEEecCCCCCC--CeeEEEE--e-CCc-c--eeeecCCcccchhHHHHHHHHHHHHhhcCCCC----cEEEEeccHHH
Q psy17815 337 SFICFTDGSKTIQ--NTSCAVY--A-GGS-A--KSYILNNINSIFTAELLALVFCLDSVKNRPDV----NTLIVCDSMSA 404 (599)
Q Consensus 337 ~~~i~tDgS~~~~--~~G~~~~--~-~~~-~--~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~----~~~i~sDs~~a 404 (599)
.+.||||||...+ ..|+|++ . .+. . .+..++ .++++.||+.|+..||+++.+.+.. ++.|+|||+++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 5899999998753 5788877 2 222 1 122333 4799999999999999999876556 99999999999
Q ss_pred HHHhhcCCC-ChHHHHHHHHHHHHh-hhCCceEEEEEeCCCCCCCcchhHHHHHHHhccC
Q psy17815 405 LTSIANKNT-SIPLIAHILNTWHTL-KSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 462 (599)
Q Consensus 405 ~~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 462 (599)
++.+.+... .++-...+...+..+ .++...|.|.|||+ ++||.||+|||+|...
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 999998543 222223333334444 44446899999994 8999999999998754
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.60 E-value=1.9e-15 Score=136.00 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=86.3
Q ss_pred eEEEecCCCC-C--CCeeE-EEE--eCCcc-eee--ecC---CcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHH
Q psy17815 338 FICFTDGSKT-I--QNTSC-AVY--AGGSA-KSY--ILN---NINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSAL 405 (599)
Q Consensus 338 ~~i~tDgS~~-~--~~~G~-~~~--~~~~~-~~~--~l~---~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~ 405 (599)
+.||||||.. . +..|+ |++ ..+.. ..+ ..+ ...+++.||+.|+..||+.+...+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 2 55775 866 32322 222 223 37889999999999999999987678999999999999
Q ss_pred HHhhcCCC-Ch----HHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCC
Q psy17815 406 TSIANKNT-SI----PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAE 463 (599)
Q Consensus 406 ~~l~~~~~-~~----~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~ 463 (599)
..+.+... .+ ++.+.+......+ .|.|.|||+ ++|+.||+||++|+...
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-----~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-----NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-----TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-----CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 99988632 11 3344444332222 499999999 59999999999998654
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.98 E-value=3.1e-10 Score=99.74 Aligned_cols=115 Identities=16% Similarity=0.012 Sum_probs=84.2
Q ss_pred CCceEEEecCCCCC--CCeeEEEEe--CCcce--eeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHh
Q psy17815 335 NNSFICFTDGSKTI--QNTSCAVYA--GGSAK--SYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSI 408 (599)
Q Consensus 335 ~~~~~i~tDgS~~~--~~~G~~~~~--~~~~~--~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l 408 (599)
+..+.||||||... +..|+|++. .+... +..++ ..++..||++|+..||+.+.+... ++.|+|||+.++..+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 45678999999865 347888773 22211 12222 578999999999999999998655 999999999999999
Q ss_pred hcCCC---------ChHHHHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHH
Q psy17815 409 ANKNT---------SIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVD 453 (599)
Q Consensus 409 ~~~~~---------~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD 453 (599)
.+... ..++.+.+..+..-++.. .+....|.-|++.-||..||
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCccc
Confidence 87641 124666666555556554 45555677799999999998
No 16
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=98.98 E-value=2.8e-10 Score=116.51 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=56.5
Q ss_pred ccccCCCCCCCChHHHHHHHHHhchhhhc----CCCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17815 5 FPLENGIPQGSSLSPLLFIIFLNDLLKII----KLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGLIF 80 (599)
Q Consensus 5 ~~~~~GvpQGs~LSP~Lf~l~~~~l~~~~----~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gl~~ 80 (599)
+..+.|+||||+|||+|.+||++++.+.+ ..+..++-||||+++++.+ .+..+..++.+..| +.+
T Consensus 300 y~qekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~S------ke~Aerfl~~Lkg~-----leL 368 (596)
T 3kyl_A 300 YKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPH------PHKVYDFELLIKGV-----YQV 368 (596)
T ss_dssp EEECSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESC------HHHHHHHHHHHHHH-----SCE
T ss_pred EecCCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECC------HHHHHHHHHHhhCc-----ceE
Confidence 44678999999999999999999998764 2467889999999999943 33444555555555 399
Q ss_pred cCCCCCeeE
Q psy17815 81 SADPQKSVC 89 (599)
Q Consensus 81 n~~~~Kt~~ 89 (599)
| ++||.+
T Consensus 369 N--pEKTrI 375 (596)
T 3kyl_A 369 N--PTKTRT 375 (596)
T ss_dssp E--EEEEEE
T ss_pred C--chhcee
Confidence 9 999985
No 17
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.57 E-value=9.4e-08 Score=82.19 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCceEEEecCCCCCC--CeeEE-EE-eCCc--ceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEeccHHHHHHh
Q psy17815 335 NNSFICFTDGSKTIQ--NTSCA-VY-AGGS--AKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSI 408 (599)
Q Consensus 335 ~~~~~i~tDgS~~~~--~~G~~-~~-~~~~--~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs~~a~~~l 408 (599)
+....||||||...+ ..|+| |+ ..+. ..+..++ ..++..||++|+..||+.+.+.+. ++.|+|||+.++.-+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~-~v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCC-CEEEEcchHHHHHHH
Confidence 456789999998653 36774 44 3222 2222332 689999999999999999987543 389999999999988
Q ss_pred hcCCC---------ChHHHHHHHHHHHHhhhC
Q psy17815 409 ANKNT---------SIPLIAHILNTWHTLKSC 431 (599)
Q Consensus 409 ~~~~~---------~~~~~~~i~~~~~~l~~~ 431 (599)
.+..- ...+.+.+..+...|+..
T Consensus 81 ~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~ 112 (134)
T 4htu_A 81 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTH 112 (134)
T ss_dssp HHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred HcCCcccCCCCCccCHHHHHHHHHHHHHHHhC
Confidence 76321 225666666666666654
No 18
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=98.44 E-value=3.7e-07 Score=89.28 Aligned_cols=87 Identities=25% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCCCCChHHHHHHHHHhchhhhcC---CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHhhcCCcccCCCCC
Q psy17815 10 GIPQGSSLSPLLFIIFLNDLLKIIK---LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGLIFSADPQK 86 (599)
Q Consensus 10 GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gl~~n~~~~K 86 (599)
-+|||-..||.+|.-+|+.++..+. .++.+..|+||++|.+ .+.+.....+..+..+++++|+.+| ++|
T Consensus 164 ~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s------~~~eeh~~~l~~v~~~L~~~gl~l~--~~K 235 (255)
T 3fsi_A 164 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAA------TSELDCQQGTRALLQTLGNLGYRAS--AKK 235 (255)
T ss_dssp BCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEE------SSHHHHHHHHHHHHHHHHHHTCCBC--TTT
T ss_pred EeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEe------CCHHHHHHHHHHHHHHHHHCCeEEC--HHH
Confidence 3699999999999999999988754 4567899999999987 3444556667788888899999999 999
Q ss_pred eeEEEeccCCCCCCCceeeeCCeEeeecccceeeeeEEccC
Q psy17815 87 SVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSK 127 (599)
Q Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~kyLGv~ld~~ 127 (599)
|+... .+++|||..++.+
T Consensus 236 c~f~~-----------------------~~~~fLG~~i~~~ 253 (255)
T 3fsi_A 236 AQICQ-----------------------KQVKYLGYLLKEG 253 (255)
T ss_dssp CEEEE-----------------------SEEEETTEEEETT
T ss_pred hcccC-----------------------CceEEEEEEEeCC
Confidence 98543 4578999999865
No 19
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=97.90 E-value=9.3e-06 Score=86.33 Aligned_cols=87 Identities=25% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCCCCCChHHHHHHHHHhchhhhcC---CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHhhcCCcccCCCCC
Q psy17815 10 GIPQGSSLSPLLFIIFLNDLLKIIK---LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGLIFSADPQK 86 (599)
Q Consensus 10 GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gl~~n~~~~K 86 (599)
-+|||-..||.+|.-+|+.++..+. .+..+..|+||++|.+ ++.+.....++.+..-++++||.+| ++|
T Consensus 168 ~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s------~~~~e~~~~l~~v~~~l~~~gl~l~--~~K 239 (455)
T 1rw3_A 168 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAA------TSELDCQQGTRALLQTLGNLGYRAS--AKK 239 (455)
T ss_dssp BCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEE------SSHHHHHHHHHHHHHHHHHHTCCBC--GGG
T ss_pred ecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEec------CCHHHHHHHHHHHHHHHHHcCCccC--ccc
Confidence 4799999999999999999988753 4677889999999987 2333444555666666778899999 999
Q ss_pred eeEEEeccCCCCCCCceeeeCCeEeeecccceeeeeEEccC
Q psy17815 87 SVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSK 127 (599)
Q Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~kyLGv~ld~~ 127 (599)
|+.. +.+++|||..++.+
T Consensus 240 ~~f~-----------------------~~~~~fLG~~i~~~ 257 (455)
T 1rw3_A 240 AQIC-----------------------QKQVKYLGYLLKEG 257 (455)
T ss_dssp CCCS-----------------------BSSCEETTEEESSS
T ss_pred hhhh-----------------------ccceeEeeeeccCC
Confidence 9832 24678999999865
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=97.73 E-value=2.5e-05 Score=82.13 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCCCCCChHHHHHHHHHhchhhhcC---CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHhhcCCcccCCCC
Q psy17815 9 NGIPQGSSLSPLLFIIFLNDLLKIIK---LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGLIFSADPQ 85 (599)
Q Consensus 9 ~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gl~~n~~~~ 85 (599)
+-+|||-..||.+|..+|+.++..+. +++.+..|+||++|.+.. +.++... .++.+..-+++.||.+| ++
T Consensus 147 ~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~-~~~eh~~----~l~~v~~~l~~~gL~l~--~~ 219 (428)
T 2zd1_B 147 NVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDL-EIGQHRT----KIEELRQHLLRWGLTTP--DK 219 (428)
T ss_dssp SBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECS-CHHHHHH----HHHHHHHHHHHHHC-------
T ss_pred EeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCC-cHHHHHH----HHHHHHHHHHHhCCccC--hh
Confidence 45899999999999999999998654 456789999999998732 2334444 44555556677899999 99
Q ss_pred CeeEEEeccCCCCCCCceeeeCCeEeeecccceeeeeEEccC
Q psy17815 86 KSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSK 127 (599)
Q Consensus 86 Kt~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~kyLGv~ld~~ 127 (599)
||+. ..+++|||..++++
T Consensus 220 Kc~~------------------------~~~~~fLG~~i~~~ 237 (428)
T 2zd1_B 220 KHQK------------------------EPPFLWMGYELHPD 237 (428)
T ss_dssp -------------------------------CTTCCEEECGG
T ss_pred Hccc------------------------cceEEEeccEecCC
Confidence 9872 12367999999765
No 21
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=81.22 E-value=0.85 Score=47.95 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=51.7
Q ss_pred cccccCCCCCCC----ChHHHHHHHHHhchhhhc----C-CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHh
Q psy17815 4 SFPLENGIPQGS----SLSPLLFIIFLNDLLKII----K-LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSD 74 (599)
Q Consensus 4 ~~~~~~GvpQGs----~LSP~Lf~l~~~~l~~~~----~-~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~ 74 (599)
.+.+..|+|+|+ ++..++-++++....... . ..+.++.|.||.++.+...- ..+.+.+.++
T Consensus 278 v~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~~~yGDD~iis~~~~~----------~~~~l~~~~~ 347 (466)
T 1xr5_A 278 IYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYEL----------DPQVLATLGK 347 (466)
T ss_dssp EEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEEEETTEEEEECSSCC----------CHHHHHHHHT
T ss_pred EEEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEEEEECCCCCceeCCCC----------CHHHHHHHHH
Confidence 456789999995 556666666666654321 1 35778999999999764321 1355566678
Q ss_pred hcCCcccCCC-CCeeE
Q psy17815 75 TNGLIFSADP-QKSVC 89 (599)
Q Consensus 75 ~~gl~~n~~~-~Kt~~ 89 (599)
+.||.++ + +||+.
T Consensus 348 ~~Gl~~t--~~dKt~~ 361 (466)
T 1xr5_A 348 NYGLTIT--PPDKSET 361 (466)
T ss_dssp TTTCCEE--CCSSCSS
T ss_pred HcCCccC--hhhhcCC
Confidence 8999999 8 89883
No 22
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A
Probab=75.99 E-value=2.3 Score=44.57 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=51.0
Q ss_pred cccccCCCCCCCCh----HHHHHHHHHhchhhhc----C-CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHh
Q psy17815 4 SFPLENGIPQGSSL----SPLLFIIFLNDLLKII----K-LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSD 74 (599)
Q Consensus 4 ~~~~~~GvpQGs~L----SP~Lf~l~~~~l~~~~----~-~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~ 74 (599)
.+.+..|.|+|+|. ..++-++++....... . ..+.++.|.||.++.+...- ..+.+.+.++
T Consensus 279 v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~~~~~~~~~~~~~~~~~~~yGDD~i~~~~~~~----------~~~~l~~~~~ 348 (461)
T 1ra6_A 279 TYXVKGGMPSGXSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEV----------DASLLAQSGK 348 (461)
T ss_dssp EEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGGCEEEEETTEEEEEESSCC----------CHHHHHHHHH
T ss_pred EEEEEeecCCCCCeeeeehHHHHHHHHHHHHHHcCCCCCCceEEEEecCCceEEEecccc----------CHHHHHHHHH
Confidence 46778999999654 5555555555443221 1 24678999999999775331 1346666777
Q ss_pred hcCCcccCCC-CCeeEEE
Q psy17815 75 TNGLIFSADP-QKSVCVD 91 (599)
Q Consensus 75 ~~gl~~n~~~-~Kt~~~~ 91 (599)
+.||.++ + +||..+.
T Consensus 349 ~~Gl~~t--~~dKt~~~~ 364 (461)
T 1ra6_A 349 DYGLTMT--PADKSATFE 364 (461)
T ss_dssp HTTCCEE--STTTCSSCC
T ss_pred HcCceec--ccccCCCCC
Confidence 8999999 6 6887533
No 23
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=73.14 E-value=1.2 Score=46.75 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=48.6
Q ss_pred CCceEEEecCCCCCCCeeEEEE-eC--Cc-----ceeeecC---CcccchhHHHHHHHHHHHHhhc-CCCCcEEEEeccH
Q psy17815 335 NNSFICFTDGSKTIQNTSCAVY-AG--GS-----AKSYILN---NINSIFTAELLALVFCLDSVKN-RPDVNTLIVCDSM 402 (599)
Q Consensus 335 ~~~~~i~tDgS~~~~~~G~~~~-~~--~~-----~~~~~l~---~~~sv~~aEl~ai~~al~~~~~-~~~~~~~i~sDs~ 402 (599)
...+.+|||+|.. ++|+ |. +. +. ..+..+. ...++++.|++||..|++.... ..+.++.|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3457899999843 3343 44 22 11 1122232 3467899999999999999876 3467999999996
Q ss_pred HHHHHhhcC
Q psy17815 403 SALTSIANK 411 (599)
Q Consensus 403 ~a~~~l~~~ 411 (599)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66666654
No 24
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=65.69 E-value=3.5 Score=43.70 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=48.3
Q ss_pred cccccCCCCCCCChHH----HHHHHHHhchhhh---c-----CCCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHHH
Q psy17815 4 SFPLENGIPQGSSLSP----LLFIIFLNDLLKI---I-----KLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIKT 71 (599)
Q Consensus 4 ~~~~~~GvpQGs~LSP----~Lf~l~~~~l~~~---~-----~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~ 71 (599)
.+.+..|.|.|+++-- ++=.+++...... + ...+.++.|-||.++.+... . ..+.+.+
T Consensus 291 v~~v~gG~PSG~p~Tsi~NSi~n~i~~~~a~~~~~g~~~~~f~~~~~~~~yGDD~i~sv~~~-~---------~~~~l~~ 360 (515)
T 3uqs_A 291 KIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLE-L---------DMVKYTM 360 (515)
T ss_dssp EEEECSSCCCCSTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHTEEEEEETTEEEEEESSC-C---------CHHHHHH
T ss_pred EEEEcCCccCCCcceeeEchHHHHHHHHHHHHHhcCCCHHHhhhheEEEEeCCceEEEeccc-c---------CHHHHHH
Confidence 4678899999977644 3333343333221 1 13456789999999876432 1 2356667
Q ss_pred HHhhcCCcccCCC-CCeeE
Q psy17815 72 WSDTNGLIFSADP-QKSVC 89 (599)
Q Consensus 72 w~~~~gl~~n~~~-~Kt~~ 89 (599)
.+++.||.++ + +||..
T Consensus 361 ~~~~~Gl~~t--~~dKt~~ 377 (515)
T 3uqs_A 361 ALRRYGLLPT--RADKEEG 377 (515)
T ss_dssp HHHHTTCCCC--CTTCCSS
T ss_pred HHHHhCcEec--cccccCC
Confidence 7788999999 6 88863
No 25
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=59.27 E-value=3 Score=33.03 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred CCcc-CCcccchhHhh-hccCccccch
Q psy17815 543 PSCQ-CGLPLTIRHLL-ECRSYIDPSR 567 (599)
Q Consensus 543 ~~C~-Cg~~~t~~H~l-~Cp~~~~~R~ 567 (599)
-.|+ ||+..+-.|.+ .||+......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~ 98 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYC 98 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccC
Confidence 5799 99999999999 9999876544
No 26
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=34.43 E-value=59 Score=33.32 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=40.0
Q ss_pred CCceEEEecCCCCCCCeeEEEEeCC-c-ceeeecC--CcccchhHHHHH-HHHHHHHhhc----CCCCcEEEEeccHHH
Q psy17815 335 NNSFICFTDGSKTIQNTSCAVYAGG-S-AKSYILN--NINSIFTAELLA-LVFCLDSVKN----RPDVNTLIVCDSMSA 404 (599)
Q Consensus 335 ~~~~~i~tDgS~~~~~~G~~~~~~~-~-~~~~~l~--~~~sv~~aEl~a-i~~al~~~~~----~~~~~~~i~sDs~~a 404 (599)
...+.++||+|.. +..|+-..+++ . ..+.++. ......+-|++| |..||+.... ..+..++++||.+..
T Consensus 322 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp TSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHH
Confidence 3458999999942 11232222322 2 2222222 234456667777 9999987654 334567888999743
No 27
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase, transferase; 2.50A {Rabbit hemorrhagic disease virus} SCOP: e.8.1.4 PDB: 1khw_A
Probab=29.17 E-value=74 Score=33.46 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=47.9
Q ss_pred cccccCCCCCCCChHHHHHHHHH--------hchhhhcC-------CCcEEEEEecCeEEEEecCChHHHHHHHHHHHHH
Q psy17815 4 SFPLENGIPQGSSLSPLLFIIFL--------NDLLKIIK-------LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNA 68 (599)
Q Consensus 4 ~~~~~~GvpQGs~LSP~Lf~l~~--------~~l~~~~~-------~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~ 68 (599)
.+.+..|.|=|++.--++=+++. ..+..... ..+.++.|=||.++.+. . .....++.
T Consensus 299 v~~~~~G~PSG~p~Tsi~NSi~N~i~i~~a~~~~~~~~g~~~~~~~~~~~~~~yGDD~i~s~~-----~---~~~~~~~~ 370 (516)
T 1khv_A 299 IVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMT-----P---MMVSLLPA 370 (516)
T ss_dssp EECCSSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHSCEEEETTEEEEEEC-----H---HHHHTHHH
T ss_pred EEEEeCCcCCCCCeecchhHHHHHHHHHHHHHHHHHhcCCCHHHHhhceeEEEecCceEEEec-----c---hhhhHHHH
Confidence 35678999999998654433321 11111111 13578899999999773 1 11233456
Q ss_pred HHHHHhhcCCcccCCC-CCeeE
Q psy17815 69 IKTWSDTNGLIFSADP-QKSVC 89 (599)
Q Consensus 69 l~~w~~~~gl~~n~~~-~Kt~~ 89 (599)
+.+.+++.||.++ + +||+.
T Consensus 371 ~~~~~~~~Gl~~t--~~dKt~~ 390 (516)
T 1khv_A 371 IIENLRDYGLSPT--AADKTEF 390 (516)
T ss_dssp HHHHHHHTTCCEE--ESSTTSC
T ss_pred HHHHHHHcCcEec--cccccCC
Confidence 7777888999998 5 57763
No 28
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A
Probab=28.98 E-value=61 Score=34.14 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred cccccCCCCCCCChHHHHHHHHHhchhh----h----cC--------CCcEEEEEecCeEEEEecCChHHHHHHHHHHHH
Q psy17815 4 SFPLENGIPQGSSLSPLLFIIFLNDLLK----I----IK--------LPLRSMLFIDDLLIISRGKDLSAILGRFQTTLN 67 (599)
Q Consensus 4 ~~~~~~GvpQGs~LSP~Lf~l~~~~l~~----~----~~--------~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~ 67 (599)
.+.+..|.|=|+++--++=+++..-+.. . +. ..+.++.|=||..+-+. . .....++
T Consensus 291 v~~~~~G~PSG~p~Tsi~NSi~N~i~~~~a~~~~~~~~~~~~~~~~~~~~~~~~yGDD~i~s~~-----~---~~~~~~~ 362 (515)
T 2ckw_A 291 KFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTYGDDCMYSVC-----P---ATASIFH 362 (515)
T ss_dssp EEECSSSCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHSEEEEETTEEEEEEC-----H---HHHHTHH
T ss_pred EEEEeCcccCCCCeeecchHHHHHHHHHHHHHHHHhhcCCCcccccccceEEEEECCceEEEec-----c---hhHHHHH
Confidence 3577899999999865443332221111 0 11 13568899999999773 1 1222345
Q ss_pred HHHHHHhhcCCcccCCC-CCeeE
Q psy17815 68 AIKTWSDTNGLIFSADP-QKSVC 89 (599)
Q Consensus 68 ~l~~w~~~~gl~~n~~~-~Kt~~ 89 (599)
.+.+.+++.||.++ + +||+.
T Consensus 363 ~~~~~~~~~Gl~~t--~~dKt~~ 383 (515)
T 2ckw_A 363 TVLANLTSYGLKPT--AADKSDA 383 (515)
T ss_dssp HHHHHHHHHTCCC----------
T ss_pred HHHHHHHHcCcEEe--ccccCCC
Confidence 66677789999999 6 48774
No 29
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=28.01 E-value=44 Score=29.39 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=27.9
Q ss_pred EEecCeEEEEecCChHHHHHHHHHHHHHHHHHHhhcCC
Q psy17815 41 LFIDDLLIISRGKDLSAILGRFQTTLNAIKTWSDTNGL 78 (599)
Q Consensus 41 ~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~w~~~~gl 78 (599)
.|++|++|-+.+.+.++....+++.++.+..|...+|+
T Consensus 147 ~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~~~~~~~~ 184 (184)
T 1y63_A 147 AYEDDIVLVRENDTLEQMAATVEEIRERVEVLKVERGL 184 (184)
T ss_dssp HSCGGGEEEEECSSHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhccCcEEECCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 47778888777788888888899999999999888775
No 30
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.00 E-value=1e+02 Score=22.96 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhCCceEEEEEeCCCCCCCcchhHHHHHHHhccCCCCCCCChHHHHHHHHHHH
Q psy17815 418 IAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYI 481 (599)
Q Consensus 418 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~~~~~~p~~~~~~~~~~~ 481 (599)
.++|++.+..++..|..+.+ +|-|-+...-||.-.++-|++.+-...-...|-.+-..+++.+
T Consensus 37 sqdirdiiksmkdngkplvv-fvngasqndvnefqneakkegvsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVV-FVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEE-EECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEE-EecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHH
Confidence 67888888999988877544 5788877788888888888877665333344555554444444
No 31
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=24.51 E-value=93 Score=25.88 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=33.9
Q ss_pred CCeeEEEE--eCCcceeeecCCcccchhHHHHHHHHHHHHhhcCCCCcEEEEecc
Q psy17815 349 QNTSCAVY--AGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 401 (599)
Q Consensus 349 ~~~G~~~~--~~~~~~~~~l~~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~sDs 401 (599)
-.+|++++ ++.+........+....-||..||..|... -......+++++|+
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 35888888 333333334433445678999999999875 22345677888875
No 32
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=23.95 E-value=68 Score=33.71 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=47.4
Q ss_pred cccccCCCCCCCChHHHHHHHHHhchhh-----h---c-----CCCcEEEEEecCeEEEEecCChHHHHHHHHHHHHHHH
Q psy17815 4 SFPLENGIPQGSSLSPLLFIIFLNDLLK-----I---I-----KLPLRSMLFIDDLLIISRGKDLSAILGRFQTTLNAIK 70 (599)
Q Consensus 4 ~~~~~~GvpQGs~LSP~Lf~l~~~~l~~-----~---~-----~~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~ 70 (599)
.+.+..|.|=|++.--++=++ +|.+.. . + ...+.++.|=||..+-+... . ..+.+.
T Consensus 291 v~~~~~G~PSG~p~Tsi~NSi-~N~i~~~~a~~~~~~~~~~~~~~~~~~~~yGDD~i~s~~~~-~---------~~~~~~ 359 (510)
T 3bso_A 291 TISINEGLPSGVPCTSQWNSI-AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIK-L---------DPEKLT 359 (510)
T ss_dssp EEEECSSCCTTSTTHHHHHHH-HHHHHHHHHHHHHHTCCHHHHHHTEEEEEETTEEEEEESSC-C---------CHHHHH
T ss_pred EEEEeCcccCCCCeeeccchH-HHHHHHHHHHHHhcCCCHHHhhheEEEEEecCceeeccCcc-c---------cHHHHH
Confidence 467889999999986544433 332221 1 1 13456789999999866432 1 134566
Q ss_pred HHHhhcCCcccCCC-CCeeE
Q psy17815 71 TWSDTNGLIFSADP-QKSVC 89 (599)
Q Consensus 71 ~w~~~~gl~~n~~~-~Kt~~ 89 (599)
+.+++.||.++ + +|+..
T Consensus 360 ~~~~~~Gl~~t--~~dKt~~ 377 (510)
T 3bso_A 360 AKLKEYGLKPT--RPDKTEG 377 (510)
T ss_dssp HHHHHTTCCEE--CTTCCSS
T ss_pred HHHHHcCcCcc--ccccccC
Confidence 66778899999 7 58874
No 33
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=23.34 E-value=1.2e+02 Score=26.88 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=29.9
Q ss_pred CeeEEEEeCCcceeeecC----CcccchhHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy17815 350 NTSCAVYAGGSAKSYILN----NINSIFTAELLALVFCLDSVKNRPDVNTLIVC 399 (599)
Q Consensus 350 ~~G~~~~~~~~~~~~~l~----~~~sv~~aEl~ai~~al~~~~~~~~~~~~i~s 399 (599)
.+|+.++.++..-..... .....-.||..||..|.+...........+++
T Consensus 37 pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 37 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 467777754332211111 12235789999999998876554455666666
No 34
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.50 E-value=2.1e+02 Score=22.58 Aligned_cols=34 Identities=6% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC--cccCCCCCeeEEEecc
Q psy17815 59 LGRFQTTLNAIKTWSDTNGL--IFSADPQKSVCVDFTR 94 (599)
Q Consensus 59 ~~~lq~~l~~l~~w~~~~gl--~~n~~~~Kt~~~~~~~ 94 (599)
...|.+-.+.+..+....-| .|| ++||+++||+.
T Consensus 28 ~~rLr~~~~~LE~~Le~~~l~Gd~~--~~~TKVlH~~~ 63 (100)
T 1go4_E 28 RSRLEEEKRMLEAQLERRALQGDYD--QSRTKVLHMSL 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSCCC--TTTEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHhhccccC--CccCeeeeecC
Confidence 34566666777777766555 788 99999999975
No 35
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=20.32 E-value=1.4e+02 Score=25.23 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy17815 372 IFTAELLALVFCLDSVKNRPDVNTLIVC 399 (599)
Q Consensus 372 v~~aEl~ai~~al~~~~~~~~~~~~i~s 399 (599)
.-.||..||..|.+...........+++
T Consensus 51 ~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 51 TAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp TCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 5789999999998875443344555555
Done!