RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17815
(599 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 8e-10
Identities = 103/653 (15%), Positives = 179/653 (27%), Gaps = 236/653 (36%)
Query: 2 SRSFPLENG-IPQGSSLSPLLFII-------FLNDLLK-------------IIKLPLRSM 40
+R L +G + + F I F L + +L + +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 41 LFIDDLLIISRGKD----LSAILGRFQTT-LNAIKTWSDTNGLIFSADPQKSVCVDFTRL 95
++ L+ S+ L+ L F+ L +D + L + T L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG----NDIHALAAKLLQEND-----TTL 116
Query: 96 RSRSVPLTLYYSDKEL--KFVDKTKFLGLIWDSKLSWGPHVEYVKSRALNAMNVLKIV-- 151
+ Y + + + + DK +S L RA+ N ++V
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKS------NSALF----------RAVGEGNA-QLVAI 159
Query: 152 -----SNKNY--GLHRQTLLKLYQSYVSPIIDY-GSSIYSSAKDHIINKLNPVHHNGIRI 203
+ +Y L + L + Y V +I + ++ + + V G+ I
Sbjct: 160 FGGQGNTDDYFEEL--RDLYQTYHVLVGDLIKFSAETLSELIRTTL--DAEKVFTQGLNI 215
Query: 204 -----------ATGALRSSPVQSLYAESNIPPLSVRRDKL--LFNYVV--KIYGCPLNP- 247
L S P+ S PL + L +YVV K+ G P
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI-SC-------PLIG----VIQLAHYVVTAKLLG--FTPG 261
Query: 248 -MHKILFGNVDSFNITPNKPLPLKIRFNCIRE-VSAV-----------LKNT-KVVPYSQ 293
+ L G T + V+AV + K +
Sbjct: 262 ELRSYLKG------AT-----------GHSQGLVTAVAIAETDSWESFFVSVRKAITVL- 303
Query: 294 GFPPW-----YSDFPVVDLSLCKSKKSET------SPLI----LQSEFLQVVSSKFNNSF 338
F + Y +P L + S SP++ L E +Q +K N+
Sbjct: 304 -F--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 339 ICFTDGSKTIQ----NT-SCAVYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDV 393
K ++ N V +G L L L K +
Sbjct: 361 ----PAGKQVEISLVNGAKNLVVSG--------------PPQSLYGLNLTLRKAKAPSGL 402
Query: 394 NTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKKVAFLW------CPSHTGIS 447
+ + IP +K+ F P H+
Sbjct: 403 DQ-----------------SRIPF-------------SERKLKFSNRFLPVASPFHS--- 429
Query: 448 GNEIVDRATRQLDG-AEFVNLS-SPADL-ISVGKKYIHEKWQKSWSDLTNNKLKCVKPTI 504
++ A+ ++ N+S + D+ I V Y SDL + I
Sbjct: 430 --HLLVPASDLINKDLVKNNVSFNAKDIQIPV---Y-D---TFDGSDLRVLS-GSISERI 479
Query: 505 GPWNVSDCNNRYEEVVLTRVRIGHTRLTHSYLFTRSDPPSCQCGL-PLTIRHL 556
+ +E + TH F P GL LT R+
Sbjct: 480 VDCIIRLPVK-WETTT-------QFKATHILDFG----PGGASGLGVLTHRNK 520
Score = 48.5 bits (115), Expect = 6e-06
Identities = 86/509 (16%), Positives = 141/509 (27%), Gaps = 210/509 (41%)
Query: 244 PLNPMHKILFGNVD-SFNITPNKPLPLKIRFNCIREVSAVLKN--TKVVPY-SQGFPPWY 299
PL H G+++ +P F + L+ K++P ++GF
Sbjct: 8 PLTLSH----GSLEHVL------LVPTASFFIA-----SQLQEQFNKILPEPTEGF--AA 50
Query: 300 SDFPVVDLSLCK------SKKSETSPLILQSEFLQVVSSKFNNSFICFTD-----GSKTI 348
D P L S E S + + L + ++F N ++ D
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 349 QNTSCAVYAGGSAKSY----------ILNNINSIF-------TAELLALVF--------C 383
+N + V K+Y NS A+L+A +F
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGGQGNTDDY 169
Query: 384 LDSVKN-----RPDVNTLI-----------------------VCDSMSALTSIANKNT-- 413
+ +++ V LI + + L N +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE---NPSNTP 226
Query: 414 ----------SIPLI-----AHILNTWHTLKSCGKKVAFLWCPSHTGISG--NEIVDRAT 456
S PLI AH + T K G L G +G +V
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVV---TAKLLGFTPGEL-RSYLKGATGHSQGLV---- 278
Query: 457 RQLDGAEFVNLSSPADLISVGKKYIHEKWQKSWSDLTNNKLKCVK-------------P- 502
A I+ SW + K + P
Sbjct: 279 -------------TAVAIAET---------DSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 503 -TIGPWNVSDCNNRYEEV------V--LTRVRI-GHTRLTHSYLFTRSD----------- 541
++ P + D E V + LT+ ++ + T+S+L
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 542 -----PPSCQCGLPLTIRHLLECRSYIDPSR-------------------PAFHRIPSLD 577
PP GL LT+R + S +D SR P FH L
Sbjct: 377 LVVSGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHS-HLLV 433
Query: 578 D-----DRDSVENLFEF----LKYINVYN 597
++D V+N F ++ I VY+
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQ-IPVYD 461
Score = 37.7 bits (87), Expect = 0.013
Identities = 56/337 (16%), Positives = 93/337 (27%), Gaps = 128/337 (37%)
Query: 216 LYAESNIPPLSVRRDKLLFN----YVVKIYGCPLNPMHKILFGNVDSFNITPNKPLPLKI 271
LY S +D ++N + YG IL +I N P+ L I
Sbjct: 1635 LYKTS-----KAAQD--VWNRADNHFKDTYG------FSIL-------DIVINNPVNLTI 1674
Query: 272 RFNC-----IREVSAVLKNTKVVPYSQGFPPWYSDFPVVDLSLCKSKKSETSPLILQS-- 324
F IRE N + + D + + K ++ +S
Sbjct: 1675 HFGGEKGKRIRE------NYSAMIFET-----IVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 325 EFLQVVSSKFNNSFICFTDGSKTIQNTSCAVYAGGSAKSYILNNINSIFTAELLALVFCL 384
L S T Q T A + E A L
Sbjct: 1724 GLL-----------------SAT-QFTQPA-----------------LTLMEK-AAFEDL 1747
Query: 385 DSVKNRPDVNTLIVCDSM---------SALTSIANKNTSIPL-------------IAHIL 422
K++ LI D+ +AL S+A+ + + + +
Sbjct: 1748 ---KSK----GLIPADATFAGHSLGEYAALASLAD---VMSIESLVEVVFYRGMTMQVAV 1797
Query: 423 NTWHTLKSCGKKVAFLWCPSHTGISGNE-----IVDRATRQLDG-AEFVNLSSPADLISV 476
+S +A P S ++ +V+R ++ E VN +
Sbjct: 1798 PRDELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 477 -GKKYIHEKWQKSWSDLTN--NKLKCVKPTIGPWNVS 510
G ++ +TN N +K K I S
Sbjct: 1856 AGDL-------RALDTVTNVLNFIKLQKIDIIELQKS 1885
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 1e-06
Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 79/352 (22%)
Query: 26 LNDLLKIIKLPLRSMLFIDD---------------LLIISRGKDLSAILGRFQTTLNAIK 70
L LLK +L + + +L+ +R K ++ L TT ++
Sbjct: 234 LRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 71 TWSDTNGLIFSADPQKSVCVDFTRLRSRSVPLTLYYSDKELKFVDKTKFLGLIWDSKLSW 130
S T + D KS+ + + R + +P +E+ + + L +I +S
Sbjct: 293 HHSMT----LTPDEVKSLLLKYLDCRPQDLP-------REVLTTNPRR-LSIIAESIRDG 340
Query: 131 GPHVEYVKSRALNAMNVLKIVSNKNYGLHRQTLLKLYQSYV-----SPI------IDYGS 179
+ K +N + I+ + L K++ + I + +
Sbjct: 341 LATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 180 SIYSSAKDHIINKLNPVHHNGIRIATGALRSSPVQSLYAESNIPPLSVRRDKLLFNYVVK 239
I S ++NKL H SL E ++ + VK
Sbjct: 399 VIKSDVMV-VVNKL----HK--------------YSL-VEKQPKESTISIPSIYLELKVK 438
Query: 240 IYGCPLNPMHKILFGNVDSFNIT----PNKPLPLKIR---FNCIREVSAVLKNTKVVPYS 292
+ +H+ + VD +NI + +P + ++ I LKN +
Sbjct: 439 LEN--EYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERM 490
Query: 293 QGFPPWYSDFPVVDLSLCKSKKSETSPLILQSEFLQVVSSKFNNSFICFTDG 344
F + DF ++ + + + + + Q+ KF +IC D
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL---KFYKPYICDNDP 539
Score = 50.6 bits (120), Expect = 1e-06
Identities = 85/502 (16%), Positives = 161/502 (32%), Gaps = 161/502 (32%)
Query: 174 IIDYGSSIYSSAK-DHIINKLNPVHHNGIRIATGALRSSPVQSLYAESNIPPLSVRR--- 229
+ D SI S + DHII + V +G L S + V++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAV--SGTLRLFWTLLSKQ-------EEM----VQKFVE 84
Query: 230 DKLLFNY---VVKIYGCPLNP---------MHKILFGNVDSF---NITPNKPLPLKIRFN 274
+ L NY + I P L+ + F N++ +P LK+R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLR-Q 142
Query: 275 CIRE--------------------VSAVLKNTKVVPYSQGFPPWYSDFPV--VDLSLCKS 312
+ E V + KV F + ++L C S
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ---CKMD-----FKIFWLNLKNCNS 194
Query: 313 KKSETSPLILQSEFLQVVSSKFNNSFICFTDGSKTIQNTSCAVYAGGSAKSYILNNINSI 372
++ +L E LQ + + + ++ +D S I+ I+SI
Sbjct: 195 PET-----VL--EMLQKLLYQIDPNWTSRSDHSSNIKL-----------------RIHSI 230
Query: 373 FTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHILNTWHTLK--- 429
AEL L+ K++P N L+V ++ N
Sbjct: 231 -QAELRRLL------KSKPYENCLLVLL-------------------NVQNAKA-WNAFN 263
Query: 430 -SC-------GKKVA-FLWCPSHTGISGNEIVDRAT-RQLDG--AEFVNLSSPADL---- 473
SC K+V FL + T IS + T ++ ++++ P DL
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREV 322
Query: 474 -------ISVGKKYIHE---KWQKSWSDLTNNKL-KCVKPTIGPWNVSDCNNRYEEVVLT 522
+S+ + I + W W + +KL ++ ++ ++ ++ + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 523 R--VRIGHTRLTHSYLFTRSDPPSCQCGLPLTIRHLLECRSYIDPSRPAF-HRIPSLDDD 579
I L S ++ + + L S ++ IPS+ +
Sbjct: 382 PPSAHIPTILL--SLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 580 -RDSVENLFEFL--KYINVYNL 598
+ +EN + L ++ YN+
Sbjct: 435 LKVKLENEYA-LHRSIVDHYNI 455
Score = 31.7 bits (71), Expect = 0.80
Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 83/252 (32%)
Query: 5 FPLENGIPQGSSLSPLLFII-----------FLNDLLK---IIKLPLRSMLFIDDLLIIS 50
FP IP + LL +I +N L K + K P S + I + +
Sbjct: 381 FPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 51 RGKDLS------AILGRFQTTL-----NAIKTWSDTNGLIFS--------ADPQKSVCVD 91
+ K + +I+ + + I + D +S + + + +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTL- 492
Query: 92 FTRLRSRSVPLTLYYSDKELKFVD-KTKFLGLIWDSKLSWGPHVEYVKSRALNAMNVLKI 150
F + + D +F++ K + W++ S +N L
Sbjct: 493 FRMV----------FLD--FRFLEQKIRHDSTAWNASGS--------------ILNTL-- 524
Query: 151 VSNKNYGLHRQTLLKLYQSYVSPIIDYGSSIYSSAKDHIIN-KLNPVHHNGIRIATGALR 209
LK Y+ Y+ + ++ D + + N + + AL
Sbjct: 525 -----------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL- 572
Query: 210 SSPVQSLYAESN 221
+ ++++ E++
Sbjct: 573 MAEDEAIFEEAH 584
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 45.0 bits (107), Expect = 8e-06
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 16/130 (12%)
Query: 336 NSFICFTDGS--KTIQNTSCAVYAGGSAKSYIL-------NNINSIFTAELLALVFCLDS 386
+ +TDGS + A G E+ A ++ +
Sbjct: 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKK 64
Query: 387 VKNRPDVNTLIVCDSMSALTSIANKN--TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHT 444
V I+ D + A + + +F +H+
Sbjct: 65 ASQLG-VKIRILHDYAG-IAFWATGEWKAKNEFTQAYAKLMNQYR---GIYSFEKVKAHS 119
Query: 445 GISGNEIVDR 454
G N+ VD
Sbjct: 120 GNEFNDYVDM 129
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 44.1 bits (104), Expect = 2e-05
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 341 FTDGSKTIQN-TSCAVYA----GGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNT 395
+TDGS +Q A A + L S AEL+AL L + +N
Sbjct: 27 YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE-GKKLN- 84
Query: 396 LIVCDSMSALTSIANKNTSIPLIAHILNTWHTLKSCGKK--VAFLWCPSHTG-----ISG 448
+ DS A + A+ ++ I + LK+ ++ + CP H G
Sbjct: 85 -VYTDSRYAF-ATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARG 142
Query: 449 NEIVDRATRQ 458
N + D+A R+
Sbjct: 143 NRMADQAARE 152
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A
{Tribolium castaneum} PDB: 3du5_A 3du6_A
Length = 596
Score = 44.5 bits (104), Expect = 8e-05
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 3 RSFPLENGIPQGSSLSPLLFIIFLNDLLKIIKLPLRS----MLFIDDLLIISRGKDLSA- 57
+ + +G+ QG LS L +++ + ++ L +DD S
Sbjct: 298 KIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYD 357
Query: 58 --ILGRFQTTLNAIKT 71
+L + +N KT
Sbjct: 358 FELLIKGVYQVNPTKT 373
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 41.7 bits (98), Expect = 6e-04
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 375 AELLALVFCL-DSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSC 431
EL A+ L DS +VN IV DS AL I + + L+ I+ +
Sbjct: 479 TELQAIYLALQDS---GLEVN--IVTDSQYALGIIQAQPDKSESELVNQIIE-----QLI 528
Query: 432 GKKVAFL-WCPSHTGISGNEIVDR 454
K+ +L W P+H GI GNE VD+
Sbjct: 529 KKEKVYLAWVPAHKGIGGNEQVDK 552
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 40.1 bits (94), Expect = 0.002
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 375 AELLALVFCL-DSVKNRPDVNTLIVCDSMSALTSIANK--NTSIPLIAHILNTWHTLKSC 431
AEL A L DS P VN I+ DS + +A++ + ++ I+ +
Sbjct: 476 AELEAFAMALTDS---GPKVN--IIVDSQYVMGIVASQPTESESKIVNQIIE-----EMI 525
Query: 432 GKKVAFL-WCPSHTGISGNEIVDR 454
K+ ++ W P+H GI GN+ VD
Sbjct: 526 KKEAIYVAWVPAHKGIGGNQEVDH 549
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 32.1 bits (74), Expect = 0.24
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 434 KVAFLWCPSHTGISGNEIVDRATRQ 458
KV W P+H GI GNE VD+
Sbjct: 119 KVYLAWVPAHKGIGGNEQVDKLVSA 143
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.40
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 17/39 (43%)
Query: 190 INKLNPVHHNGIRIATGALRSSPVQSLYAESNIPPLSVR 228
+ KL +L+ LYA+ + P L+++
Sbjct: 22 LKKL-----------QASLK------LYADDSAPALAIK 43
Score = 28.8 bits (63), Expect = 3.6
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 346 KTIQNTSCAVYAGGSAKSYILN 367
K +Q S +YA SA + +
Sbjct: 23 KKLQA-SLKLYADDSAPALAIK 43
Score = 28.0 bits (61), Expect = 5.6
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 160 RQTL------LKLYQSYVSPIIDYGSSI 181
+Q L LKLY +P + +++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 30.6 bits (70), Expect = 0.73
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 434 KVAFLWCPSHTGISGNEIVDRATRQLDGAE 463
+ ++ P H+G GNE DR R+ GA+
Sbjct: 123 DIQWMHVPGHSGFIGNEEADRLARE--GAK 150
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding,
beta-roll, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 179
Score = 27.7 bits (61), Expect = 8.8
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 502 PTIGPWNVSDCNNRYEEVVLTRVRIGHTRLTHSYLFTRSDP 542
P + DC++ V ++RI T+ T +L S
Sbjct: 66 PVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRA 106
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural
genomics, unknown function; 1.75A {Staphylococcus aureus
subsp} SCOP: b.26.1.4 b.26.1.4
Length = 238
Score = 27.8 bits (61), Expect = 9.4
Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 9/145 (6%)
Query: 230 DKLLFNYVVKIYGCPLNPMHKILFGNVDSFNIT-PNKPLPLKIRFNCIREVSAVLKNTKV 288
KL+ Y ++ L + +IT + + + N + + +T +
Sbjct: 2 HKLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHLEQN--NQGTWQANHTSI 59
Query: 289 VPYSQGFPPWYSDFPVVDLSLCKSKKSETSPLILQSEFLQVVSSKFNNSFICFTDGSKTI 348
D + L L + + + + + +++ + I
Sbjct: 60 ----NKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTMTIGPNAYDD--MVIQSLMNAI 113
Query: 349 QNTSCAVYAGGSAKSYILNNINSIF 373
+ + ++
Sbjct: 114 IIKDFQSIQESQYVRIVHDKNTDVY 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,900,017
Number of extensions: 515306
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 24
Length of query: 599
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 500
Effective length of database: 3,937,614
Effective search space: 1968807000
Effective search space used: 1968807000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)