BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17816
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YFS|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
           Johnsonii Ncc533 In Complex With Sucrose
          Length = 571

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 127 YESYWKGFIVLSSLLLTCIVSYSRIYLLYHTW--NQILYGAIIGSILGTGWFIVTQLFLS 184
           Y S W G+ ++  ++    V+ + IYLLY+ +  N   +    G I G G          
Sbjct: 140 YVSNWNGYQLVIGMMGVPNVNDNHIYLLYNKYGDNDFNHWKNAGPIFGLG---------- 189

Query: 185 PLFPLITQWRISEML 199
              P+I QW  S  L
Sbjct: 190 --TPVIQQWSGSATL 202


>pdb|2YFR|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
           Johnsonii Ncc533
 pdb|2YFT|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
           Johnsonii Ncc533 In Complex With 1-Kestose
          Length = 571

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 127 YESYWKGFIVLSSLLLTCIVSYSRIYLLYHTW--NQILYGAIIGSILGTGWFIVTQLFLS 184
           Y S W G+ ++  ++    V+ + IYLLY+ +  N   +    G I G G          
Sbjct: 140 YVSNWNGYQLVIGMMGVPNVNDNHIYLLYNKYGDNDFNHWKNAGPIFGLG---------- 189

Query: 185 PLFPLITQWRISEML 199
              P+I QW  S  L
Sbjct: 190 --TPVIQQWSGSATL 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,734,040
Number of Sequences: 62578
Number of extensions: 262308
Number of successful extensions: 445
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)