Query psy17816
Match_columns 235
No_of_seqs 298 out of 1713
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:46:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 99.8 5.3E-20 1.8E-24 154.7 6.8 90 67-174 109-207 (231)
2 2ipb_A PHON protein, class A n 99.8 2.7E-19 9.1E-24 150.3 7.6 90 67-174 97-195 (230)
3 1qi9_A Protein (vanadium bromo 99.5 5.7E-14 1.9E-18 130.1 7.9 110 69-180 377-510 (556)
4 1up8_A Vanadium-dependent brom 99.1 1.4E-10 4.8E-15 107.8 9.8 84 90-175 478-572 (598)
5 3bb0_A Vanadium chloroperoxida 99.0 4.7E-10 1.6E-14 105.2 6.0 32 140-171 480-511 (609)
6 1v54_D Cytochrome C oxidase su 32.2 89 0.003 23.5 5.4 62 147-208 67-130 (147)
7 2y69_D Cytochrome C oxidase su 30.9 1E+02 0.0034 23.8 5.6 61 148-208 90-152 (169)
8 2lx0_A Membrane fusion protein 30.6 64 0.0022 17.1 4.1 13 155-167 2-14 (32)
9 2kdc_A Diacylglycerol kinase; 30.6 69 0.0024 23.2 4.5 25 61-85 64-88 (121)
10 3hzq_A Large-conductance mecha 20.1 96 0.0033 22.3 3.4 34 157-190 33-66 (114)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.79 E-value=5.3e-20 Score=154.74 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=66.2
Q ss_pred HHHHHHHHhhCCCCCCCCC----C---Cc--cCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHH
Q psy17816 67 MINMTLKYIIQEPRPARDH----I---DK--VSVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVL 137 (235)
Q Consensus 67 ~l~~~lK~~i~rpRP~~~~----~---~~--~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 137 (235)
+++..+|..++||||+... . .. ...++||||||++.++++ +.++....+.. + .
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~--a~~l~~~~~~~------------~----~ 170 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWAT--ALVLAEINPQR------------Q----N 170 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHH--HHHHHHHCGGG------------H----H
T ss_pred HHHHHHHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHH--HHHHHHHHHHH------------H----H
Confidence 6889999999999997421 1 11 457899999999976444 44443332211 1 1
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q psy17816 138 SSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTG 174 (235)
Q Consensus 138 ~~~~~a~lv~~SRvylg~H~~sDVl~G~~iG~~~~~~ 174 (235)
..+.++..+++||||+|+||++||++|+++|..++..
T Consensus 171 ~~~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~ 207 (231)
T 1d2t_A 171 EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVAT 207 (231)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence 2356788999999999999999999999999776653
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.78 E-value=2.7e-19 Score=150.35 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=65.8
Q ss_pred HHHHHHHHhhCCCCCCCCCC----Cc-----cCCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHH
Q psy17816 67 MINMTLKYIIQEPRPARDHI----DK-----VSVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVL 137 (235)
Q Consensus 67 ~l~~~lK~~i~rpRP~~~~~----~~-----~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 137 (235)
+++..+|..++||||+.... .. ...++||||||++.++ +.+.++..+.+.+ ..
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~--a~a~~l~~~~~~~-----------~~----- 158 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYST--LLALVLSQARPER-----------AQ----- 158 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHH--HHHHHHHHHCGGG-----------HH-----
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHH--HHHHHHHHHHHHH-----------HH-----
Confidence 68999999999999975321 01 3478999999999764 4444444332211 11
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q psy17816 138 SSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTG 174 (235)
Q Consensus 138 ~~~~~a~lv~~SRvylg~H~~sDVl~G~~iG~~~~~~ 174 (235)
..+.++.++++||||+|+||++||++|+++|..++..
T Consensus 159 ~~~~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~ 195 (230)
T 2ipb_A 159 ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFAR 195 (230)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 2345678999999999999999999999999766553
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.47 E-value=5.7e-14 Score=130.12 Aligned_cols=110 Identities=13% Similarity=-0.021 Sum_probs=68.5
Q ss_pred HHHHHHhhCCCCCCCC-----CCCc------cCCCCCCCChhHHHHHHHHHHHHHHHHHHHhh----cCCcc-c-cchhH
Q psy17816 69 NMTLKYIIQEPRPARD-----HIDK------VSVPYGMPSSHAQFMWFFSTYILCFVVVRLRY----NNSTY-K-YESYW 131 (235)
Q Consensus 69 ~~~lK~~i~rpRP~~~-----~~~~------~~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~----~~~~~-~-~~~~~ 131 (235)
+.++|.+++|+||+.. .... ...++||||||++.+ ++++.++..++..+. ..+.. . .....
T Consensus 377 ~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A--~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~~ 454 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQN--GAFATVLKALIGLDRGGDCYPDPVYPDDDGLK 454 (556)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHH--HHHHHHHHHHHCHHHHTSBCSSCEEECTTSSS
T ss_pred hhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHH--HHHHHHHHHHHhcccccccccccccccccccc
Confidence 3589999999999742 1111 346899999999976 444454544432110 00000 0 00000
Q ss_pred H-------HHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy17816 132 K-------GFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQ 180 (235)
Q Consensus 132 r-------~~~~~~~~~~a~lv~~SRvylg~H~~sDVl~G~~iG~~~~~~~~~l~~ 180 (235)
+ ..+...+..++..+++||||+|+||++||++|+++|..++...+.-..
T Consensus 455 r~~~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~~ 510 (556)
T 1qi9_A 455 LIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQEL 510 (556)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111345788999999999999999999999999988776544333
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.13 E-value=1.4e-10 Score=107.77 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=54.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHhhc-CCc-----cccc-----hhHHHHHHHHHHHHHHHHHHHhhccCCCCh
Q psy17816 90 SVPYGMPSSHAQFMWFFSTYILCFVVVRLRYN-NST-----YKYE-----SYWKGFIVLSSLLLTCIVSYSRIYLLYHTW 158 (235)
Q Consensus 90 ~~~~sfPSgHa~~~~~~a~~~~l~~~~~~~~~-~~~-----~~~~-----~~~r~~~~~~~~~~a~lv~~SRvylg~H~~ 158 (235)
...+||||||++.+ ++++.++..++..... ... .... ......+...+..++..+++||||+|+||+
T Consensus 478 P~~pSYPSGHAt~S--~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHyp 555 (598)
T 1up8_A 478 PFHPSYGSGHAVVA--GACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYF 555 (598)
T ss_dssp CSSCSSSCHHHHHH--HHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred CCCCCCChHHHHHH--HHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecH
Confidence 46789999999966 5556666555433210 000 0000 000011223456788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy17816 159 NQILYGAIIGSILGTGW 175 (235)
Q Consensus 159 sDVl~G~~iG~~~~~~~ 175 (235)
+||++|+.+|..++...
T Consensus 556 SDVlAG~~LG~aVa~~v 572 (598)
T 1up8_A 556 SDQFESLLLGEQVAIGI 572 (598)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766543
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=98.97 E-value=4.7e-10 Score=105.21 Aligned_cols=32 Identities=22% Similarity=-0.064 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q psy17816 140 LLLTCIVSYSRIYLLYHTWNQILYGAIIGSIL 171 (235)
Q Consensus 140 ~~~a~lv~~SRvylg~H~~sDVl~G~~iG~~~ 171 (235)
..++..+++||+|+|+||++||++|..+|..+
T Consensus 480 ~~~A~e~g~SRIY~GVHypsDv~aG~~lG~~~ 511 (609)
T 3bb0_A 480 WELMFENAISRIFLGVHWRFDAAAARDILIPT 511 (609)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHSCHHHHBCBC
T ss_pred HHHHHHHhhhhheeeeeCHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999544
No 6
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=32.21 E-value=89 Score=23.54 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-cchhhhh-hhhhhhhhhhhcccCCcc
Q psy17816 147 SYSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLFL-SPLFPLI-TQWRISEMLMIRDTTLIP 208 (235)
Q Consensus 147 ~~SRvylg~H~~sDVl~G~~iG~~~~~~~~~l~~~~~-~~~~~~~-~~w~~~~~~~~rd~~~~~ 208 (235)
-++|+--+---+.-|++|.++++.++.+.|.+.+... .|.-.-+ -+|.-.+.=+++|....|
T Consensus 67 t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nP 130 (147)
T 1v54_D 67 SFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 130 (147)
T ss_dssp CHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSST
T ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 3455444434445699999999998888887776553 2321111 355555555555554333
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=30.92 E-value=1e+02 Score=23.84 Aligned_cols=61 Identities=11% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-cchhhhh-hhhhhhhhhhhcccCCcc
Q psy17816 148 YSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLFL-SPLFPLI-TQWRISEMLMIRDTTLIP 208 (235)
Q Consensus 148 ~SRvylg~H~~sDVl~G~~iG~~~~~~~~~l~~~~~-~~~~~~~-~~w~~~~~~~~rd~~~~~ 208 (235)
++|.--+---+.-|++|.++++.++.+.|.+.+... .|.-.-+ -+|.-.+.=+++|....|
T Consensus 90 ~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NP 152 (169)
T 2y69_D 90 FAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 152 (169)
T ss_dssp HHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSST
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCC
Confidence 344433333334699999999998888887776553 2321111 355555555555554333
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=30.65 E-value=64 Score=17.06 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.2
Q ss_pred CCChhHHHHHHHH
Q psy17816 155 YHTWNQILYGAII 167 (235)
Q Consensus 155 ~H~~sDVl~G~~i 167 (235)
.|+.-+|++|.+.
T Consensus 2 khtiweviaglva 14 (32)
T 2lx0_A 2 KHTIWEVIAGLVA 14 (32)
T ss_dssp CSSSHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 4888999999653
No 9
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=30.62 E-value=69 Score=23.24 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCC
Q psy17816 61 GLILNEMINMTLKYIIQEPRPARDH 85 (235)
Q Consensus 61 ~~~~~~~l~~~lK~~i~rpRP~~~~ 85 (235)
.+++.|++|..+...+++--|..++
T Consensus 64 lVl~~EllNTAIE~vvD~v~~e~h~ 88 (121)
T 2kdc_A 64 LVMIVEILNSAIEAVVDRIGSEYHE 88 (121)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCH
Confidence 3456999999999999988876544
No 10
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=20.09 E-value=96 Score=22.32 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q psy17816 157 TWNQILYGAIIGSILGTGWFIVTQLFLSPLFPLI 190 (235)
Q Consensus 157 ~~sDVl~G~~iG~~~~~~~~~l~~~~~~~~~~~~ 190 (235)
..-|..+|.++|...+-+.-.++.-+..|+...+
T Consensus 33 NViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~l 66 (114)
T 3hzq_A 33 NVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKI 66 (114)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999998888888888765544
Done!