RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17816
(235 letters)
>gnl|CDD|239477 cd03382, PAP2_dolichyldiphosphatase, PAP2_like proteins,
dolichyldiphosphatase subfamily. Dolichyldiphosphatase
is a membrane-associated protein located in the
endoplasmic reticulum and hydrolyzes dolichyl
pyrophosphate, as well as dolichylmonophosphate at a low
rate. The enzyme is necessary for maintaining proper
levels of dolichol-linked oligosaccharides and protein
N-glycosylation, and might play a role in re-utilization
of the glycosyl carrier lipid for additional rounds of
lipid intermediate biosynthesis after its release during
protein N-glycosylation reactions.
Length = 159
Score = 182 bits (465), Expect = 8e-59
Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Query: 12 LTITYVEYPKGDLVGKFLALLSLTPFGVLIGFVTLILFRRDLHTVTFFVGLILNEMINMT 71
++T+V Y GDL+ LA LSL P +L+G+ TLILFRR+L + F+GL+ NE +N
Sbjct: 1 FSLTHVLYDPGDLLSFLLAYLSLLPVAILVGYATLILFRRELEAIYLFIGLLANEALNYV 60
Query: 72 LKYIIQEPRPARDHIDKVSVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYW 131
LK II+EPRP V YGMPSSH+QFM FF+ Y+L F+ +RL NS
Sbjct: 61 LKRIIKEPRPCS-GAYFVRSGYGMPSSHSQFMGFFAVYLLLFIYLRLGRLNS-----LVS 114
Query: 132 KGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWF 176
+ + L LLL +VSYSR+YL YHT +Q++ GAI+G +LG WF
Sbjct: 115 RFLLSLGLLLLALLVSYSRVYLGYHTVSQVVVGAIVGILLGILWF 159
>gnl|CDD|238813 cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type
2 phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid
phosphatase, vanadium chloroperoxidases, vanadium
bromoperoxidases, and several other mostly
uncharacterized subfamilies. Several members of this
superfamily have been predicted to be transmembrane
proteins.
Length = 122
Score = 62.9 bits (153), Expect = 8e-13
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 51 RDLHTVTFFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVP--------YGMPSSHAQF 102
R L + + L+ ++ LKY+ PRP Y PS HA F
Sbjct: 1 RRLLALLLLLALLAGLLLTGVLKYLFGRPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAF 60
Query: 103 MWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQIL 162
+ + ++ + RL + + L LLL +V SR+YL H + +L
Sbjct: 61 AFALALFLALLLPRRL------------LRLLLGLLLLLLALLVGLSRVYLGVHYPSDVL 108
Query: 163 YGAIIGSILGTGWF 176
GA++G ++
Sbjct: 109 AGALLGILVALLVL 122
>gnl|CDD|216577 pfam01569, PAP2, PAP2 superfamily. This family includes the enzyme
type 2 phosphatidic acid phosphatase (PAP2),
Glucose-6-phosphatase EC:3.1.3.9,
Phosphatidylglycerophosphatase B EC:3.1.3.27 and
bacterial acid phosphatase EC:3.1.3.2. The family also
includes a variety of haloperoxidases that function by
oxidising halides in the presence of hydrogen peroxide
to form the corresponding hypohalous acids.
Length = 123
Score = 55.9 bits (135), Expect = 3e-10
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 58 FFVGLILNEMINMTLKYIIQEPRPA-----RDHIDKVSVPYGMPSSHAQFMWFFSTYILC 112
+ L+L ++ + LK + PRP + ++ PS HA + + ++
Sbjct: 5 LLLALLLALLLTVILKLLFGRPRPDVILETGPLLPQLPGYDSFPSGHAATAFALALFLA- 63
Query: 113 FVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILG 172
+ + L L L +V SR+YL H + +L GA++G+++
Sbjct: 64 ------------LLLKRRRPKLLALLLLALAALVGLSRVYLGAHFPSDVLAGALLGALVA 111
Query: 173 TGWFIV 178
+ +
Sbjct: 112 LLVYRL 117
>gnl|CDD|214471 smart00014, acidPPc, Acid phosphatase homologues.
Length = 116
Score = 48.9 bits (117), Expect = 9e-08
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 61 GLILNEMINMTLKYIIQEPRP----ARDHIDKVSVP------YGMPSSHAQFMWFFSTYI 110
+++++ N +K PRP D + Y PS H F + F+ ++
Sbjct: 3 LAVVSQLFNGVIKNYFGRPRPFFLSIGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFL 62
Query: 111 LCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSI 170
L Y + ++ LLL +V +SR+YL H + +L G+++G +
Sbjct: 63 L------------LYLPARAGRKLLIFLLLLLALVVGFSRVYLGAHWPSDVLAGSLLGIL 110
Query: 171 LG 172
+
Sbjct: 111 IA 112
>gnl|CDD|239488 cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 106
Score = 47.3 bits (113), Expect = 2e-07
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 20/111 (18%)
Query: 58 FFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVPYGMPSSHAQFMWFFSTYILCFVVVR 117
L + LK+ + RP + S PS H + +T++ +
Sbjct: 8 LAEAAALTAAVTEGLKFAVGRARPDGSNNGYRS----FPSGHTASAFAAATFL------Q 57
Query: 118 LRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIG 168
RY Y +Y L +V SR+ H + +L GA IG
Sbjct: 58 YRYGWRWYGIPAY----------ALASLVGASRVVANRHWLSDVLAGAAIG 98
>gnl|CDD|239486 cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 182
Score = 44.5 bits (106), Expect = 8e-06
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 39 VLIGFVTLILFRRDLHTVTFFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVPYGMPSS 98
VL+ + L+L RR + + L+ +N LK ++Q PRP + Y PS
Sbjct: 48 VLLLALLLLLKRRRRAALFLLLALLGGGALNTLLKLLVQRPRPPLHLLVPEGG-YSFPSG 106
Query: 99 HAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTW 158
HA +T + F+ L + +++ + +L +V SR+YL H
Sbjct: 107 HA----MGATVLYGFLAYLLARRLP----RRRVRILLLILAAILILLVGLSRLYLGVHYP 158
Query: 159 NQILYGAIIGSILGTGWFIVTQLFLSPL 186
+ +L G +LG W + L L
Sbjct: 159 SDVLAGW----LLGLAWLALLILLYRRL 182
>gnl|CDD|239484 cd03390, PAP2_containing_1_like, PAP2, subfamily similar to human
phosphatidic_acid_phosphatase_type_2_domain_containing_1
. Most likely membrane-associated phosphatidic acid
phosphatases. Plant members of this group are
constitutively expressed in many tissues and exhibit
both diacylglycerol pyrophosphate phosphatase activity
as well as phosphatidate (PA) phosphatase activity, they
may have a more generic housekeeping role in lipid
metabolism.
Length = 193
Score = 43.7 bits (104), Expect = 2e-05
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 43/186 (23%)
Query: 28 FLALLS-LTPFGVLIGFVTLILFRRDLHTVTFFVGLILNEMINM----TLKYIIQEPRP- 81
L ++S P V+I +L R T +GL+L+ +N LK PRP
Sbjct: 17 LLVIISVGIPLLVIILI-SLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPD 75
Query: 82 --AR---DHIDKVSVPYGM------------------PSSHAQF----MWFFSTYILCFV 114
AR D G+ PS H+ F + F S Y+ +
Sbjct: 76 FLARCFPDGGTPSDTLVGIDICCTGDPGVLKEGRKSFPSGHSSFAFAGLGFLSLYLAGKL 135
Query: 115 VVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTG 174
+ +S W+ + L LLL +V+ SR H ++ ++ G++IG L
Sbjct: 136 HIFDPRGSS-------WRLLLALLPLLLAILVAVSRTRDYRHHFSDVIAGSLIG--LIIA 186
Query: 175 WFIVTQ 180
+ Q
Sbjct: 187 YLSYRQ 192
>gnl|CDD|215288 PLN02525, PLN02525, phosphatidic acid phosphatase family protein.
Length = 352
Score = 42.8 bits (101), Expect = 7e-05
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 72 LKYIIQEPRPARDHIDKV---------SVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNN 122
+K ++ PRP+ + +V ++ YG+PSSH S Y+L +V+ L+ +
Sbjct: 54 IKDVVSAPRPSCPPVRRVTATKDEEENAMEYGLPSSHTLNTVCLSGYLLHYVLSYLQNVD 113
Query: 123 STYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIV 178
++ + G + LL +V + R+YL H+ I+ G IG ++ W V
Sbjct: 114 ASVI----FAGLALFC--LLVALVGFGRLYLGMHSPIDIIAGLAIGLVILAFWLTV 163
>gnl|CDD|223743 COG0671, PgpB, Membrane-associated phospholipid phosphatase [Lipid
metabolism].
Length = 232
Score = 40.9 bits (95), Expect = 2e-04
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 12/161 (7%)
Query: 23 DLVGKFLALLSLTPFGVLIGFVTLILFRRDLHTVTFFVGLILNEMINMTLKYIIQEPRPA 82
L FL +L + +L+ +L V LI+ + +I PRP
Sbjct: 65 LLSYLFLLILHIILAFLLLVLFPSLLALALKLLVGLPRPLIVLSALKTW--HIFARPRPG 122
Query: 83 RDHI-DKVSVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLL 141
+ Y PS HA + + + +R + +++ LL
Sbjct: 123 LLVALVLGASGYSFPSGHAAGAAAAALLLALLLPLRRALL---------RRVLLLILLLL 173
Query: 142 LTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLF 182
L +V SR+YL H + ++ GA++G++ ++ +
Sbjct: 174 LAALVGLSRVYLGVHYPSDVIGGALLGALAALLLLLLLRPL 214
>gnl|CDD|239478 cd03383, PAP2_diacylglycerolkinase, PAP2_like proteins,
diacylglycerol_kinase like sub-family. In some
prokaryotes, PAP2_like phosphatase domains appear fused
to E. coli DAGK-like trans-membrane diacylglycerol
kinase domains. The cellular function of these
architectures remains to be determined.
Length = 109
Score = 37.3 bits (87), Expect = 0.001
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 94 GMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYL 153
GMPS HA + +T + L NN I + S+LL +V++SR+ +
Sbjct: 40 GMPSGHAAIAFSIAT------AISLITNNP----------IISILSVLLAVMVAHSRVEM 83
Query: 154 LYHTWNQILYGAIIG 168
HT +++ GAI+G
Sbjct: 84 KIHTMWEVVVGAILG 98
>gnl|CDD|239489 cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 177
Score = 38.0 bits (89), Expect = 0.001
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 23/114 (20%)
Query: 72 LKYIIQEPRP--ARDHIDKVSVP-----YGMPSSHAQFMWFFSTYILCFVVVRLRYNNST 124
LK ++ RP A D + V + Y SSHA +++ L +
Sbjct: 76 LKPLVARLRPCNALDGVRLVVLGDQGGSYSFASSHAA-----NSFALALFIWLF------ 124
Query: 125 YKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIV 178
+ +G LL +V YSR+Y+ H ++ GA+IG I G ++++
Sbjct: 125 -----FRRGLFSPVLLLWALLVGYSRVYVGVHYPGDVIAGALIGIISGLLFYLL 173
>gnl|CDD|178317 PLN02715, PLN02715, lipid phosphate phosphatase.
Length = 327
Score = 35.4 bits (81), Expect = 0.016
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 95 MPSSHAQFMWFFSTYILCFVVVRLR-YNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYL 153
PS H + + T++ ++ +++ +N + K +V+ LL C+V SR+
Sbjct: 187 FPSGHTSWSFAGLTFLSLYLSGKIKAFNGEGH----VAKLCLVIFPLLAACLVGISRVDD 242
Query: 154 LYHTWNQILYGAIIGSILGTGWFIVTQLFLSP 185
+H W + GA+IG ++ F Q + +P
Sbjct: 243 YWHHWQDVFAGALIGILVAA--FCYRQFYPNP 272
>gnl|CDD|239487 cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria and archaea, lacks
functional characterization and may act as a
membrane-associated lipid phosphatase.
Length = 125
Score = 32.3 bits (74), Expect = 0.062
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 59 FVGLILNEMINMTLKYIIQEPRP-----ARDHIDKVSVPYGMPSSHAQFMWFFSTYILCF 113
+ L + +N LK + + PRP + ++ + YG PS HAQ S
Sbjct: 19 GLALCASGYLNAALKEVFKIPRPFTYDGIQAIYEESAGGYGFPSGHAQT----SATFWGS 74
Query: 114 VVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIG 168
+++ +R K + L ++L ++S+SR+YL H + ++ G +IG
Sbjct: 75 LMLHVR------------KKWFTLIGVVLVVLISFSRLYLGVHWPSDVIGGVLIG 117
>gnl|CDD|239482 cd03388, PAP2_SPPase1, PAP2_like proteins,
sphingosine-1-phosphatase subfamily.
Sphingosine-1-phosphatase is an intracellular enzyme
located in the endoplasmic reticulum, which regulates
the level of sphingosine-1-phosphate (S1P), a bioactive
lipid. S1P acts as a second messenger in the cell, and
extracellularly by binding to G-protein coupled
receptors of the endothelial differentiation gene
family.
Length = 151
Score = 31.8 bits (73), Expect = 0.14
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 93 YGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIY 152
YG PS+HA S Y+L ++ R +Y + G I+ L + +V SRIY
Sbjct: 78 YGFPSTHAMNATAISFYLLIYLYDRYQY--------PFVLGLILA--LFYSTLVCLSRIY 127
Query: 153 LLYHTWNQILYGAIIGSILGTGWF 176
+ H+ ++ G++IG ++ F
Sbjct: 128 MGMHSVLDVIAGSLIGVLILLFRF 151
>gnl|CDD|215139 PLN02250, PLN02250, lipid phosphate phosphatase.
Length = 314
Score = 31.8 bits (72), Expect = 0.23
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 135 IVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLFLSP 185
IV LL+ +V SR+ +H W + GA+IG + + F Q F P
Sbjct: 200 IVFLPLLVAALVGVSRVDDYWHHWQDVFAGALIGLTVAS--FCYLQFFPPP 248
>gnl|CDD|239479 cd03384, PAP2_wunen, PAP2, wunen subfamily. Most likely a family of
membrane associated phosphatidic acid phosphatases.
Wunen is a drosophila protein expressed in the central
nervous system, which provides repellent activity
towards primordial germ cells (PGCs), controls the
survival of PGCs and is essential in the migration
process of these cells towards the somatic gonadal
precursors.
Length = 150
Score = 30.3 bits (69), Expect = 0.42
Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 37/145 (25%)
Query: 57 TFFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVPYGMPSSHAQFMWF----------- 105
F GL +++ KY+ RP + K + S Q++
Sbjct: 8 VFLFGLFATQLLTDLGKYVTGRLRPHFLDVCKPNYTDLTCSLDHQYIADCTCCTGDPDLI 67
Query: 106 -------------FSTYILCFVVVRLRYNNSTYKYESYWKG------FIVLSSLLLTCIV 146
S Y F+ + Y + K +G + L L V
Sbjct: 68 REARLSFPSGHASLSMYAAVFLAL---YLQARLK----LRGSRLLRPLLQFLLLALALYV 120
Query: 147 SYSRIYLLYHTWNQILYGAIIGSIL 171
SRI H W+ +L GA++GS++
Sbjct: 121 GLSRISDYKHHWSDVLAGALLGSVI 145
>gnl|CDD|129744 TIGR00659, TIGR00659, TIGR00659 family protein. Members of this
small but broadly distibuted (Gram-positive,
Gram-negative, and Archaeal) family appear to have
multiple transmembrane segments. The function is
unknown. A homolog, LrgB of Staphylococcus aureus, in
the same small superfamily but in an outgroup to this
subfamily, is regulated by LytSR and is suggested to act
as a murein hydrolase. Of the three paralogous proteins
in B. subtilis, one is a full length member of this
family, one lacks the C-terminal 60 residues and has an
additional 128 N-terminal residues but branches within
the family in a phylogenetic tree, and one is closely
related to LrgB and part of the outgroup [Hypothetical
proteins, Conserved].
Length = 226
Score = 30.5 bits (69), Expect = 0.64
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 127 YESYWKGFIVLSSLLLTCIVS-----YSRIYLLYHTWNQILYGAIIGSILG--TGWFIVT 179
YESY G V++ LL +V+ Y ++ + W +I+ +GS++ +G +
Sbjct: 51 YESYMLGGGVINDLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL 110
Query: 180 QLFLSP 185
L L P
Sbjct: 111 LLGLGP 116
>gnl|CDD|239485 cd03391, PAP2_containing_2_like, PAP2, subfamily similar to human
phosphatidic_acid_phosphatase_type_2_domain_containing_2
. PAP2 is a super-family of phosphatases and
haloperoxidases. This subgroup, which is specific to
eukaryota, lacks functional characterization and may act
as a membrane-associated phosphatidic acid phosphatase.
Length = 159
Score = 28.4 bits (64), Expect = 1.9
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 56 VTFFVGLILNEMINMTLKYIIQEPRPARDHIDK---VSVP-YGMPSSHAQFMWFFSTYIL 111
V +GL+L+ + LK +++ RPA + D V+V Y PS HA F + ++L
Sbjct: 50 VNLLLGLLLDIITVAILKALVRRRRPAYNSPDMLDYVAVDKYSFPSGHASRAAFVARFLL 109
Query: 112 CFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIG 168
+V+ + + +L +V SR+ L H +L GA +G
Sbjct: 110 NHLVLAVPL---------------RVLLVLWATVVGISRVLLGRHHVLDVLAGAFLG 151
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.5 bits (64), Expect = 3.6
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 110 ILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHT--WNQILYGAII 167
++ F Y + F + ++ T +V + + WN I I
Sbjct: 928 LVIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTALVVIVNLKIALEINRWNWISLITIW 987
Query: 168 GSILGTGWFIVTQLFLSPLFPL 189
GSIL W I + S +FP
Sbjct: 988 GSIL--VWLIFV-IVYSSIFPS 1006
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 28.6 bits (64), Expect = 3.8
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 102 FMWFFST-YILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLY 155
S IL L TY + Y + LLL ++ S + LL
Sbjct: 218 TYLLISALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLL 272
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 27.8 bits (63), Expect = 5.0
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 133 GFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLFLSPLFPLITQ 192
+++S++ T V + N+ L + I SI+ T + T L
Sbjct: 258 AVGIIASIIGTFFVRTGKGANPMKALNRGLIVSAILSIVAT--YFATYWLLPAAGKGFLW 315
Query: 193 WRIS 196
W +
Sbjct: 316 WNLF 319
>gnl|CDD|226844 COG4420, COG4420, Predicted membrane protein [Function unknown].
Length = 191
Score = 27.4 bits (61), Expect = 5.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 12/50 (24%)
Query: 167 IGSILGTGWFIVTQLFLSPLFPLITQWRISEMLMIRDTTLIPNILWFEYT 216
I G+ FI+T L L+ W ++ + L+P + W Y
Sbjct: 51 IARFGGSWAFILTFTLL-----LLL-W------IVLNLFLVPGLAWDPYP 88
>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated.
Length = 313
Score = 27.7 bits (62), Expect = 5.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 118 LRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLY 155
L+Y N KY+ W +LTCI+SY R LLY
Sbjct: 219 LKYENFLIKYKENW-------EEILTCILSYIRDSLLY 249
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 27.7 bits (62), Expect = 5.9
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 165 AIIGSILGTGWFIVTQLFLSPLFPLITQWRISEMLMIRDTTLIPNIL 211
II I+G + Q+ + + ++ ++P +L
Sbjct: 128 IIIAGIIGYAFIYAGQILWG-IIAAGLIYMALRYFRPKEDAMVPKLL 173
>gnl|CDD|239480 cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily.
Several members of this family have been annotated as
bacitracin transport permeases, as it was suspected that
they form the permease component of an ABC transporter
system. It was shown, however, that BcrC from Bacillus
subtilis posesses undecaprenyl pyrophosphate (UPP)
phospatase activity, and it is hypothesized that it
competes with bacitracin for UPP, increasing the cell's
resistance to bacitracin.
Length = 144
Score = 26.8 bits (60), Expect = 6.1
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 55 TVTFFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVPY----GMPSSHAQFMWFFSTYI 110
T+ V L++N +I + + PRP + +P+ PS H + +
Sbjct: 39 TIAVAVALLINYIIGL----LYFHPRPFVVGLGHNLLPHAADSSFPSDHTTLFFSIA--- 91
Query: 111 LCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSI 170
++ R + W G+I+L +L +V++SRIYL H +L A++ +
Sbjct: 92 FSLLLRRRK-----------WAGWILL---ILALLVAWSRIYLGVHYPLDMLGAALVAVL 137
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 27.4 bits (61), Expect = 6.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 160 QILYGAIIGSILGTGWFIVTQLFLSPLFPLITQW 193
QI G + W I +FLS + ++ W
Sbjct: 93 QIPVG-YLAGKYVFKWSIGIGMFLSSVISIVIPW 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.453
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,193,746
Number of extensions: 1194118
Number of successful extensions: 1880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1848
Number of HSP's successfully gapped: 142
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)