RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17816
(235 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 3e-05
Identities = 40/210 (19%), Positives = 68/210 (32%), Gaps = 71/210 (33%)
Query: 23 DLVGKFLALLS-------LTPFG-----VLIGFVTLILFRRDLHTVTFFVGLILNEMINM 70
+LVGKFL +S + F L F L D+H + + L N+ +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTTLV 117
Query: 71 TLKYIIQEPRPARDHIDKVSVPYGMPSSHA--------------QF-------MWF---- 105
K +I+ AR + P+ S+ A F +F
Sbjct: 118 KTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 106 --FSTY------ILCFVVVRL----RYNNSTYKYESYWKGFIVLSSL-----------LL 142
+ TY ++ F L R K + +G +L L LL
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLL 232
Query: 143 TCIVSYSRIYLLYHTWNQILYGAIIGSILG 172
+ +S I ++ Q+ + + +LG
Sbjct: 233 SIPISCPLIGVI-----QLAHYVVTAKLLG 257
Score = 31.6 bits (71), Expect = 0.25
Identities = 33/165 (20%), Positives = 44/165 (26%), Gaps = 68/165 (41%)
Query: 94 GM------PSSHAQFMW------FFSTY---ILCFV-------VV--------RLRYNNS 123
GM S AQ +W F TY IL V + R+R N S
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 124 TYKYESYWKGFIVLSSLL------LTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFI 177
+E+ G + + T S LL T
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF------------------ 1731
Query: 178 VTQLFLSPLFPLITQWRISEMLMIRDTTLIPNILWF------EYT 216
TQ P +T + ++ LIP F EY
Sbjct: 1732 -TQ-------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae}
SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Length = 231
Score = 36.9 bits (85), Expect = 0.003
Identities = 22/160 (13%), Positives = 38/160 (23%), Gaps = 37/160 (23%)
Query: 37 FGVLIGFVTLILFRRDLHTVTFFVGLILNEMINMTLKYIIQEPRPARDHIDKVSVP---- 92
FG I + L + G + + K RP +
Sbjct: 83 FGSPITEKDAPALHKLLTNMIEDAGDL----ATRSAKDHYMRIRPFAFYGVSTCNTTEQD 138
Query: 93 -----YGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVS 147
PS H W + + + +
Sbjct: 139 KLSKNGSYPSGHTSIGWATALVL-------------AEINPQRQNEILKRGYE-----LG 180
Query: 148 YSRIYLLYHTWNQILYGAIIGSILGTGWFIVTQLFLSPLF 187
SR+ YH + + ++GS +V L +P F
Sbjct: 181 QSRVICGYHWQSDVDAARVVGSA------VVATLHTNPAF 214
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A
bacterial non-specific acid phosphatase; 2.23A
{Salmonella typhimurium} PDB: 2a96_A 2akc_A
Length = 230
Score = 36.1 bits (83), Expect = 0.006
Identities = 15/137 (10%), Positives = 30/137 (21%), Gaps = 33/137 (24%)
Query: 60 VGLILNEMINMTLKYIIQEPRPARDHIDKVSVP---------YGMPSSHAQFMWFFSTYI 110
+ + + K RP P PS H + + +
Sbjct: 90 LLKMGGYYATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVL 149
Query: 111 LCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSI 170
+ + SR+ H + + G +G++
Sbjct: 150 -------------SQARPERAQELARRGWE-----FGQSRVICGAHWQSDVDAGRYVGAV 191
Query: 171 LGTGWFIVTQLFLSPLF 187
+L P F
Sbjct: 192 ------EFARLQTIPAF 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.23
Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 11 PLTITYVEYPKGDLVGKFL--ALLSLTPFGVLIGFVTLILFRRDLH------------TV 56
T ++ D + + +L L P F L +F H +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 57 TFFVGLILNEMINMTLKYIIQEPRPAR----D-HIDKVSVPYGMPSSHAQFMWFFSTYIL 111
V +++N++ +L + ++P+ + +++ + H +
Sbjct: 401 KSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIV-------- 450
Query: 112 CFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYH 156
YN ++S L+ + Y ++ +H
Sbjct: 451 ------DHYN-IPKTFDS--------DDLIPPYLDQYFYSHIGHH 480
Score = 29.8 bits (66), Expect = 0.95
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 138 SSLLLTCIVSYSRIYL-LYHTWNQILYGAIIGSILGTGWFIVTQLFLSPLFPLITQWRIS 196
+ L+ I R L + W + + I + L+ L P +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---------ESSLNVLEPAEYRKMFD 376
Query: 197 EMLMIRDTTLIP----NILWFE 214
+ + + IP +++WF+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFD 398
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 27.6 bits (60), Expect = 3.0
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 19 YPKGDLVGKFLALLSLTPFGVLIGFVTLILFRRDLHTVTFFVGL-ILNEMINMTLKYIIQ 77
+ + L +LSL G + V L + DL + + L + + + K
Sbjct: 123 FTTEEARRACLGMLSLVGSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTF-- 180
Query: 78 EPRPARDHIDKVSVPYGMPSSHAQFMWF 105
R A D +D+ VP+G+ W+
Sbjct: 181 HFREAGDVLDRALVPHGLIDKPTLLEWY 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.453
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,596,147
Number of extensions: 206063
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 17
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.6 bits)