RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17816
         (235 letters)



>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
           blattae [TaxId: 563]}
          Length = 224

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 20/129 (15%), Positives = 33/129 (25%), Gaps = 33/129 (25%)

Query: 68  INMTLKYIIQEPRP---------ARDHIDKVSVPYGMPSSHAQFMWFFSTYILCFVVVRL 118
              + K      RP              DK+S     PS H    W  +  +        
Sbjct: 104 ATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVL-------- 155

Query: 119 RYNNSTYKYESYWKGFIVLSSLLLTCIVSYSRIYLLYHTWNQILYGAIIGSILGTGWFIV 178
                           +          +  SR+   YH  + +    ++GS       +V
Sbjct: 156 -----AEINPQRQNEILKRGYE-----LGQSRVICGYHWQSDVDAARVVGS------AVV 199

Query: 179 TQLFLSPLF 187
             L  +P F
Sbjct: 200 ATLHTNPAF 208


>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860
           {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 157

 Score = 27.8 bits (61), Expect = 0.65
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 192 QWRISEMLMIRDTTLIPNILWF 213
             R+     I DT  I  +L  
Sbjct: 134 TVRLKSRTCIYDTLRIATLLAT 155


>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
           murine encephalomyelitis virus, strain da [TaxId:
           12124]}
          Length = 256

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 86  IDKVSVPYGMPSSHAQFMWFFSTYILCFVVVRLRYNNSTYKYESYWKGFIVLSSLLLTCI 145
           +D V+ P  +P +  +  +F+   +   ++   +   ST+ Y+      + L+ LLLT +
Sbjct: 17  VDFVAEPVKLPENQTRVAFFYDRAVPIGMLRPGQNIESTFVYQE---NDLRLNCLLLTPL 73

Query: 146 VSYSR--IYLLYHTWNQILYGAIIGSILGTGWFIVTQLFLSPLFPLITQWR 194
            S+          T   + +  +          +  Q +    F   T ++
Sbjct: 74  PSFCPDSTSGPVKTKAPVQWRWVRSGGTTNFPLMTKQDYAFLCFSPFTYYK 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.453 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 896,348
Number of extensions: 40881
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 15
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)