BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17819
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 154/273 (56%), Positives = 196/273 (71%), Gaps = 15/273 (5%)
Query: 13 SFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
+F++AL+Q+ V K+ NL A +R+AA GA+++ LPECFN PYGT YF +Y+E+I
Sbjct: 3 TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI- 61
Query: 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIP 118
G +++ LS VAKE I+L+GGSIPE D K+YN +V HLFDI +P
Sbjct: 62 PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVP 121
Query: 119 GGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
G ITF+ES LSPG+SFS F+ C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFN+
Sbjct: 122 GKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNL 181
Query: 179 TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
TTGP HWELL R+RA DNQVYVA SPA+D + Y+AWGHSTVVDPW +L + EETI
Sbjct: 182 TTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEETI 241
Query: 239 VYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
+Y+DIDL L ++R QIP KQKR DLY V +K
Sbjct: 242 LYSDIDLKKLAEIRQQIPILKQKRADLYTVESK 274
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 254 bits (650), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/283 (47%), Positives = 173/283 (61%), Gaps = 23/283 (8%)
Query: 11 AKSFKIALVQMT-VGKDKNKNLENAVRFIRKAADN--GASLIVLPECFNCPYGTKYFREY 67
++ K+ALVQ++ DK NL+ A FI +A L+VLPECFN PY T FR+Y
Sbjct: 8 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKY 67
Query: 68 SEEIGSGITSKT---LSNVAKEKEIFLVGGSIPELD--NDKVYNAAT------------- 109
SE I S + LSN+A + +I LVGG+IPELD DK+YN +
Sbjct: 68 SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 127
Query: 110 -VHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCD 168
VHLFD+ IP GI+F ES+ LSPG + + G+GICYDMRFPELA + +KG
Sbjct: 128 KVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAF 187
Query: 169 LLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANI 228
+IYP AFN TGPLHW LL RSRA DNQVYV CSPA++ S Y A+GHS VVDP I
Sbjct: 188 AMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKI 247
Query: 229 LATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY-DVTA 270
+A + E I+YA++D + R +P KQ+R+D+Y DV A
Sbjct: 248 VAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRRFDVYSDVNA 290
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 33/286 (11%)
Query: 6 RKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFN--------- 56
R M+T + F IA+ QMT D KN + A I +A + ++ LPECF+
Sbjct: 8 RTMATGRHF-IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQ 66
Query: 57 --------CPYGTKYFREYSEEIG-----SGITSKTLSNVAKEKEIFLVGGSIPELDNDK 103
C Y KY RE + + G+ K S+ A L+ +D+D
Sbjct: 67 IDLAMATDCEYMEKY-RELARKHNIWLSLGGLHHKDPSDAAHPWNTHLI------IDSDG 119
Query: 104 VYNAA--TVHLFDIAIPGGITFKESDVLSPGNSF-SMFNNGICNIGLGICYDMRFPELAQ 160
V A +HLFD+ IPG + ES+ G + I +GL ICYD+RFPEL+
Sbjct: 120 VTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSL 179
Query: 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220
RK+G LL +P AF + TG HWE L+R+RA +NQ YV A + N ++GHS
Sbjct: 180 WNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSM 239
Query: 221 VVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266
VVDPW ++A + +A+IDL+ ++ +R+ P +R DLY
Sbjct: 240 VVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLY 285
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 36/258 (13%)
Query: 15 KIALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY---SEE 70
K+A VQM + +KN A + I++A+ GA L+VLPE F+ Y + E +++
Sbjct: 3 KVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQK 62
Query: 71 IGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLFDIAI 117
I G T+ L +VA++ +++V G+ E D D +YN+A V HLF
Sbjct: 63 IPEGETTTFLMDVARDTGVYIVAGT-AEKDGDVLYNSAVVVGPRGFIGKYRKIHLF---- 117
Query: 118 PGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176
++E PG+ F +F+ G +G+ I +D FPE A+ KG D++ +P
Sbjct: 118 -----YREKFFFEPGDLGFRVFDLGFMKVGVMIXFDWFFPESARTLALKGADVIAHPANL 172
Query: 177 NMTTGPLHWELLVRSRANDNQVY-VAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQF 234
M P + RA +N+VY V A +++ +I G S + P A +L+ S+
Sbjct: 173 VMPYAPRAMPI----RALENKVYTVTADRVGEERGLKFI--GKSLIASPKAEVLSMASET 226
Query: 235 EETIVYADIDLNTLNKVR 252
EE + A+IDL+ + R
Sbjct: 227 EEEVGVAEIDLSLVRNKR 244
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 28 NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY---SEEIGSGITSKTLSNVA 84
+KN A + I++A+ GA L+VLPE F+ Y + E +++I G T+ L +A
Sbjct: 17 DKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLXELA 76
Query: 85 KEKEIFLVGGSIPELDNDKVYNAATV-------------HLFDIAIPGGITFKESDVLSP 131
+E +++V G+ E + +YN+A V HLF ++E P
Sbjct: 77 RELGLYIVAGT-AEKSGNYLYNSAVVVGPRGYIGKYRKIHLF---------YREKVFFEP 126
Query: 132 GN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVR 190
G+ F +F+ G +G+ IC+D FPE A+ KG +++ +P P +
Sbjct: 127 GDLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANLVXPYAPRAXPI--- 183
Query: 191 SRANDNQVY-VAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEETIVYADIDLN 246
RA +N+VY + A +++ +I G S + P A +L+ S+ EE I +IDLN
Sbjct: 184 -RALENRVYTITADRVGEERGLKFI--GKSLIASPKAEVLSIASETEEEIGVVEIDLN 238
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 25/268 (9%)
Query: 15 KIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS 73
K+ + Q+ V D +KN ++ K + ++VLPE +N Y ++ E ++
Sbjct: 22 KVQIYQLPIVFGDSSKNETQITQWFEKNXNAEVDVVVLPEXWNNGYDLEHLNEKADN-NL 80
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGI-----------T 122
G + + ++A++ ++ +V GS+ + N++++N A F + G +
Sbjct: 81 GQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTA----FSVNKSGQLINEYDKVHLVPX 136
Query: 123 FKESDVLSPGNSFS---MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT 179
+E + L+ G + ++G L ICYD+RFPEL + + G + Y + +
Sbjct: 137 LREHEFLTAGEYVAEPFQLSDGTYVTQL-ICYDLRFPELLRYPARSGAKIAFYVAQWPXS 195
Query: 180 TGPLHWELLVRSRANDNQVYVAAC-SPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
HW L+++RA +N +V S D N++Y GHS V++P +++ I
Sbjct: 196 RLQ-HWHSLLKARAIENNXFVIGTNSTGFDGNTEYA--GHSIVINPNGDLVGELNESADI 252
Query: 239 VYADIDLNTLNKVRDQIPTGKQKRYDLY 266
+ D++LN + + R+ IP K + DLY
Sbjct: 253 LTVDLNLNEVEQQRENIPVFKSIKLDLY 280
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 32/272 (11%)
Query: 14 FKIALVQMTVGK-DKNKNLENAVRFIRKAADNGASLIVLPECFNCPY-GTKYFREYSEEI 71
+IAL+Q T D NL+ +A++ GA L++ PE F Y ++ + S E
Sbjct: 21 MRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQ 80
Query: 72 GSGITSKTLSNVAKEKEIFLV-----------GGSIPELDNDKVYNAATVHLFDIAIPGG 120
S+ L +A+++ I LV G EL ++ A+ + P
Sbjct: 81 VDAARSR-LRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP-- 137
Query: 121 ITFKESDVLSPGNSFS-MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF--N 177
+E PG + + G + L +CYD+ FPE+ + +G L++ P A +
Sbjct: 138 ---EEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGD 194
Query: 178 MTTGPLHWELLVRSRANDNQV---YVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQF 234
T+ P +L+ +RA +N + Y C P + G S VV P L
Sbjct: 195 ETSVP---GILLPARAVENGITLAYANHCGP----EGGLVFDGGSVVVGPAGQPLGELGV 247
Query: 235 EETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266
E ++ D+ + + D + +R +L+
Sbjct: 248 EPGLLVVDLPDQSQDAGSDSADYLQDRRAELH 279
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 44/277 (15%)
Query: 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS-------GITSKTLSNVAKEKEI 89
+ KAA GA+ IV PE + ++ E+ S G + L A E I
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGI 89
Query: 90 --------FLVGGSIPELDNDKVYNAATVHLF----DIAIPGGITFK--------ESDVL 129
+V G + N + + + I +PG ++ E
Sbjct: 90 GFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYF 149
Query: 130 SPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTG------- 181
PG+ F +++ +G+ IC D R+PE +V +G +++ G +N T
Sbjct: 150 EPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIIC--GGYNTPTHNPPVPQH 207
Query: 182 ----PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEE 236
H L +++ + N + AA + + GHS +V P I+A T+ E+
Sbjct: 208 DHLTSFHHLLSMQAGSYQNGAWSAAAGKV-GMEENCMLLGHSCIVAPTGEIVALTTTLED 266
Query: 237 TIVYADIDLNTLNKVRDQIPTGKQKRY-DLYDVTAKL 272
++ A +DL+ ++R+ I KQ R Y + A+L
Sbjct: 267 EVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 125 ESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTG-- 181
E PG+ F +++ +G+ IC D R+PE +V KG +++ G +N T
Sbjct: 146 EKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPTHNP 203
Query: 182 ---------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-T 231
H L +++ + N + AA + GHS +V P I+A T
Sbjct: 204 PVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKV-GMEEGCMLLGHSCIVAPTGEIVALT 262
Query: 232 SQFEETIVYADIDLNTLNKVRDQIPTGKQKR 262
+ E+ ++ A +DL+ ++R+ I K R
Sbjct: 263 TTLEDEVITAALDLDRCRELREHIFNFKAHR 293
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 125 ESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTG-- 181
E PG+ F +++ +G+ IC D R+PE +V KG +++ G +N T
Sbjct: 146 EKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPTHNP 203
Query: 182 ---------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-T 231
H L +++ + N + AA + GHS +V P I+A T
Sbjct: 204 PVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKV-GMEEGCMLLGHSCIVAPTGEIVALT 262
Query: 232 SQFEETIVYADIDLNTLNKVRDQIPTGKQKR 262
+ E+ ++ A +DL+ ++R+ I K R
Sbjct: 263 TTLEDEVITAALDLDRCRELREHIFNFKAHR 293
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%)
Query: 125 ESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTG-- 181
E PG+ F +++ +G+ IC D R+PE +V KG +++ G +N T
Sbjct: 146 EKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIIC--GGYNTPTHNP 203
Query: 182 ---------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-T 231
H L ++ + N + AA + GHS +V P I+A T
Sbjct: 204 PVPQHDHLTSFHHLLSMQCGSYQNGAWSAAAGKV-GMEEGCMLLGHSCIVAPTGEIVALT 262
Query: 232 SQFEETIVYADIDLNTLNKVRDQIPTGKQKR 262
+ E+ ++ A +DL+ ++R+ I K R
Sbjct: 263 TTLEDEVITAALDLDRCRELREHIFNFKAHR 293
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 39/266 (14%)
Query: 37 FIRKAADNGASLIVLPECFNCPYG----TKY-FREYSEEIGSGITSKTLSNVAKEKEIFL 91
I+ AA+ G +++ E + P+ K+ + E++EE +G T+K L+ +AK + +
Sbjct: 104 MIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVI 163
Query: 92 VGGSIPELD---NDKVYNAATV----------HLFDIAIPGGITFKESDVLSPGNS-FSM 137
+ SI E D + ++N A V H + IP F ES GN+ +
Sbjct: 164 I-HSILERDMEHGETIWNTAVVISNSGRYLGKHRKN-HIPRVGDFNESTYYMEGNTGHPV 221
Query: 138 FNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA-FNMTTGPLHWELLVRSRANDN 196
F + + ICY P+ ++ G +++ P A + PL W + R+ A N
Sbjct: 222 FETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPL-WSIEARNAAIAN 280
Query: 197 QVYVAACSPAQDKN--SDYIA-------------WGHSTVVDP-WANILATSQFEETIVY 240
+ + + ++Y + +G S V P + + S+ ++ ++
Sbjct: 281 SYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLV 340
Query: 241 ADIDLNTLNKVRDQIPTGKQKRYDLY 266
++DLN +V+D +R LY
Sbjct: 341 VELDLNLCRQVKDFWGFRMTQRVPLY 366
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 12 KSFKIALVQMTVG-----KDKNKNLENAVRFIR--KAADNGASLIVLPECFNCPYGTKYF 64
+ F +A +Q V KD + N+E+ +R + KA G LI+ PE G
Sbjct: 12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEY--STQGLNTA 69
Query: 65 REYSEEI---GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGI 121
+ SEE G ++ + KE +++ V SI E + D N + I P G
Sbjct: 70 KWLSEEFLLDVPGKETELYAKACKEAKVYGVF-SIMERNPDSNKNPYNTAI--IIDPQGE 126
Query: 122 TFKESDVLSPGNSFSMFNNG-----ICN------IGLGICYDMRFPELAQVYRKKGCDLL 170
+ L P N + G +C + + IC+D PELA+ KGC++
Sbjct: 127 IILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVY 186
Query: 171 IYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDY 213
I ++ W L RS A N +Y + + A N Y
Sbjct: 187 IRISGYSTQVND-QWILTNRSNAWHNLMYTVSVNLAGYDNVFY 228
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 31/225 (13%)
Query: 12 KSFKIALVQMTVG-----KDKNKNLENAVRFIR--KAADNGASLIVLPECFNCPYGTKYF 64
+ F +A +Q V KD + N+E+ +R + KA G LI+ PE G
Sbjct: 12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEY--STQGLNTA 69
Query: 65 REYSEEI---GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGI 121
+ SEE G ++ + KE +++ V SI E + D N + I P G
Sbjct: 70 KWLSEEFLLDVPGKETELYAKACKEAKVYGVF-SIMERNPDSNKNPYNTAI--IIDPQGE 126
Query: 122 TFKESDVLSPGNSFSMFNNGICNIGLGIC-------------YDMRFPELAQVYRKKGCD 168
+ L P N + G ++G+ +C +D PELA+ KGC+
Sbjct: 127 IILKYRKLFPWNPIEPWYPG--DLGMPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCN 184
Query: 169 LLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDY 213
+ I ++ W L RS A N +Y + + A N Y
Sbjct: 185 VYIRISGYSTQVND-QWILTNRSNAWHNLMYTVSVNLAGYDNVFY 228
>pdb|2E11|A Chain A, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|B Chain B, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|C Chain C, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|D Chain D, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
Length = 266
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 149 ICYDMRFPELAQ----VYRKKGCDLLIYPGAFNMTTGPLH-WELLVRSRANDNQVYVAAC 203
+CYD+RFP + V R D + N + + W+ L+R+RA +N +VAA
Sbjct: 142 VCYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAV 201
Query: 204 SPAQ-DKNSDYIAWGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPT 257
+ D N + A G S V+D + +E +V I L + R + P
Sbjct: 202 NRVGVDGNQLHYA-GDSAVIDFLGQPQVEIREQEQVVTTTISAAALAEHRARFPA 255
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus
Rapc8
Length = 348
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACS 204
I L +C D +PE+ + KG +L++ + M ++ ++ A N YVA +
Sbjct: 161 ISLIVCDDGNYPEIWRDCAMKGAELIVRCQGY-MYPAKEQQIMMAKAMAWANNTYVAVAN 219
Query: 205 PAQDKNSDYIAWGHSTVVDPWANILATSQFEET-IVYADIDLNTLNKVR 252
A + Y +GHS ++ L EE I YA++ ++ + R
Sbjct: 220 -ATGFDGVYSYFGHSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFR 267
>pdb|2J4X|A Chain A, Streptococcus Dysgalactiae-Derived Mitogen (Sdm)
Length = 213
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 57 CPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIA 116
P + F+E EE+ K+ S + KE+ ++ GG I D +K+ + +++F
Sbjct: 59 SPAQERRFKE-EEEVDIYALIKSYSVICKEQYNYVDGGLIKTSDREKLDSTIYMNIFGEQ 117
Query: 117 IP-------------GGITFKESDV-----LSPGNSFSMF-NNGICNIGL-GICY 151
IP +TF+E DV L N ++ +N IC G GI Y
Sbjct: 118 IPLKEQSKYKITFQNKFVTFQEIDVRLRKSLMSDNRIKLYEHNSICKKGYWGIHY 172
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|1IG3|B Chain B, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|2F17|A Chain A, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With
Pyrithiamin Pyrophosphate And Amp At 2.5 Angstrom
pdb|2F17|B Chain B, Mouse Thiamin Pyrophosphokinase In A Ternary Complex With
Pyrithiamin Pyrophosphate And Amp At 2.5 Angstrom
Length = 263
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 151 YDMRFPELAQVYRKKGCDLLIYP 173
+D PE+ + Y KKGCDL+ P
Sbjct: 92 FDSIRPEVKEYYTKKGCDLISTP 114
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 235 EETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL 272
E + V + D++ ++RD +P +K YD+ DV AK+
Sbjct: 262 EASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKI 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,042,989
Number of Sequences: 62578
Number of extensions: 335649
Number of successful extensions: 870
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 21
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)