Query psy17819
Match_columns 272
No_of_seqs 107 out of 1180
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:49:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07587 ML_beta-AS mammalian-l 100.0 3.5E-49 7.6E-54 347.6 28.7 258 12-270 62-361 (363)
2 TIGR03381 agmatine_aguB N-carb 100.0 2.7E-48 5.9E-53 333.3 28.3 255 14-269 1-279 (279)
3 PLN02798 nitrilase 100.0 1E-47 2.2E-52 330.6 28.7 258 10-268 7-284 (286)
4 cd07568 ML_beta-AS_like mammal 100.0 1.6E-47 3.4E-52 329.8 29.1 260 12-272 2-287 (287)
5 PLN02747 N-carbamolyputrescine 100.0 2E-47 4.4E-52 330.4 29.4 262 8-270 1-290 (296)
6 PLN00202 beta-ureidopropionase 100.0 1.9E-47 4.1E-52 339.9 29.5 258 11-270 84-382 (405)
7 cd07572 nit Nit1, Nit 2, and r 100.0 7E-47 1.5E-51 322.2 27.7 247 15-262 1-265 (265)
8 cd07564 nitrilases_CHs Nitrila 100.0 7.2E-47 1.6E-51 326.8 27.5 256 14-271 1-296 (297)
9 cd07573 CPA N-carbamoylputresc 100.0 1.3E-46 2.8E-51 323.7 28.6 256 14-271 1-284 (284)
10 PRK10438 C-N hydrolase family 100.0 3.7E-46 8.1E-51 315.7 28.3 243 13-266 3-255 (256)
11 cd07583 nitrilase_5 Uncharacte 100.0 6.5E-46 1.4E-50 314.3 27.9 243 15-262 1-253 (253)
12 cd07576 R-amidase_like Pseudom 100.0 1.1E-45 2.5E-50 312.9 27.7 243 15-264 1-254 (254)
13 cd07580 nitrilase_2 Uncharacte 100.0 1.4E-45 3.1E-50 314.7 26.6 246 15-266 1-268 (268)
14 PLN02504 nitrilase 100.0 2.9E-45 6.4E-50 321.3 26.7 251 13-269 24-322 (346)
15 cd07579 nitrilase_1_R2 Second 100.0 6.5E-45 1.4E-49 311.5 25.2 237 15-266 1-268 (279)
16 cd07585 nitrilase_7 Uncharacte 100.0 1.5E-44 3.2E-49 307.3 26.4 249 15-266 1-261 (261)
17 cd07581 nitrilase_3 Uncharacte 100.0 5.1E-44 1.1E-48 303.0 27.7 240 16-262 1-255 (255)
18 KOG0807|consensus 100.0 5.5E-45 1.2E-49 289.2 19.1 264 6-270 8-292 (295)
19 cd07565 aliphatic_amidase alip 100.0 1.4E-43 3.1E-48 304.8 29.1 235 14-257 1-259 (291)
20 cd07569 DCase N-carbamyl-D-ami 100.0 6.9E-44 1.5E-48 309.0 27.0 255 12-269 2-300 (302)
21 cd07586 nitrilase_8 Uncharacte 100.0 6.2E-44 1.4E-48 304.7 26.2 248 15-267 1-266 (269)
22 cd07584 nitrilase_6 Uncharacte 100.0 8.6E-44 1.9E-48 302.1 26.3 242 15-262 1-257 (258)
23 cd07575 Xc-1258_like Xanthomon 100.0 1.9E-43 4.2E-48 298.8 27.9 241 14-263 1-250 (252)
24 cd07578 nitrilase_1_R1 First n 100.0 1.7E-43 3.6E-48 300.3 25.8 244 14-265 1-258 (258)
25 cd07577 Ph0642_like Pyrococcus 100.0 3.6E-43 7.8E-48 298.4 25.2 242 15-266 1-259 (259)
26 cd07574 nitrilase_Rim1_like Un 100.0 4.1E-43 8.8E-48 301.4 24.7 249 14-265 1-280 (280)
27 COG0388 Predicted amidohydrola 100.0 1.6E-42 3.4E-47 296.8 28.1 251 13-266 2-267 (274)
28 cd07570 GAT_Gln-NAD-synth Glut 100.0 4.2E-43 9.2E-48 298.3 23.4 247 15-264 1-259 (261)
29 cd07197 nitrilase Nitrilase su 100.0 5.3E-41 1.1E-45 283.9 27.5 239 16-260 1-251 (253)
30 PRK13286 amiE acylamide amidoh 100.0 5.7E-41 1.2E-45 293.1 27.4 238 12-257 11-272 (345)
31 PRK13287 amiF formamidase; Pro 100.0 1.5E-40 3.2E-45 290.2 28.6 236 13-257 13-271 (333)
32 cd07567 biotinidase_like bioti 100.0 5.8E-41 1.2E-45 287.9 22.9 230 14-251 1-281 (299)
33 cd07582 nitrilase_4 Uncharacte 100.0 4.4E-40 9.6E-45 284.2 27.1 246 15-262 2-293 (294)
34 PRK02628 nadE NAD synthetase; 100.0 6E-40 1.3E-44 310.0 27.2 249 12-262 11-295 (679)
35 PRK13981 NAD synthetase; Provi 100.0 9.9E-40 2.1E-44 303.1 25.1 229 14-246 1-242 (540)
36 KOG0806|consensus 100.0 5.4E-40 1.2E-44 273.0 16.9 258 13-270 13-295 (298)
37 PLN02339 NAD+ synthase (glutam 100.0 1.8E-37 4E-42 292.5 26.4 243 13-260 3-289 (700)
38 cd07571 ALP_N-acyl_transferase 100.0 2.2E-37 4.7E-42 264.1 22.4 213 14-247 1-251 (270)
39 KOG0805|consensus 100.0 1.1E-33 2.5E-38 225.6 20.9 250 13-270 17-316 (337)
40 cd07566 ScNTA1_like Saccharomy 100.0 3.2E-33 6.9E-38 240.3 20.8 207 15-223 1-265 (295)
41 KOG0808|consensus 100.0 1.3E-30 2.7E-35 209.8 19.8 258 11-269 71-370 (387)
42 PRK00302 lnt apolipoprotein N- 100.0 8.9E-31 1.9E-35 241.7 21.0 214 12-246 218-470 (505)
43 TIGR00546 lnt apolipoprotein N 100.0 3.6E-30 7.8E-35 230.7 18.7 196 12-228 158-391 (391)
44 PF00795 CN_hydrolase: Carbon- 100.0 4.6E-28 1E-32 195.6 16.5 159 15-175 1-186 (186)
45 PRK12291 apolipoprotein N-acyl 99.9 7.6E-27 1.6E-31 209.4 18.7 186 14-226 195-413 (418)
46 COG0815 Lnt Apolipoprotein N-a 99.9 4.5E-24 9.7E-29 195.0 18.4 213 13-246 227-481 (518)
47 PRK13825 conjugal transfer pro 99.8 7.5E-20 1.6E-24 162.1 17.1 176 14-205 186-387 (388)
48 KOG2303|consensus 99.8 8E-20 1.7E-24 159.4 10.6 242 10-255 1-285 (706)
49 PLN02798 nitrilase 85.8 6.8 0.00015 33.6 9.0 73 158-230 34-118 (286)
50 cd07581 nitrilase_3 Uncharacte 84.9 7.5 0.00016 32.5 8.7 72 157-230 21-105 (255)
51 cd07576 R-amidase_like Pseudom 84.6 8.6 0.00019 32.0 9.0 70 157-229 23-104 (254)
52 PLN02747 N-carbamolyputrescine 84.4 6.5 0.00014 33.8 8.3 70 157-229 29-114 (296)
53 cd07568 ML_beta-AS_like mammal 84.2 6.6 0.00014 33.5 8.2 70 158-229 35-120 (287)
54 PLN00202 beta-ureidopropionase 83.5 8.1 0.00017 35.1 8.7 73 157-231 117-206 (405)
55 cd07572 nit Nit1, Nit 2, and r 82.6 11 0.00025 31.5 9.0 74 157-230 22-108 (265)
56 TIGR03381 agmatine_aguB N-carb 82.5 9.7 0.00021 32.2 8.6 70 157-229 23-108 (279)
57 cd07564 nitrilases_CHs Nitrila 82.2 10 0.00022 32.7 8.6 72 157-231 24-120 (297)
58 cd07584 nitrilase_6 Uncharacte 81.7 14 0.00029 31.0 9.1 71 158-229 24-109 (258)
59 cd07583 nitrilase_5 Uncharacte 78.9 14 0.0003 30.8 8.2 72 157-230 23-105 (253)
60 cd07587 ML_beta-AS mammalian-l 77.9 16 0.00034 32.7 8.5 72 157-230 94-184 (363)
61 cd07197 nitrilase Nitrilase su 77.8 17 0.00038 29.9 8.5 70 157-229 22-105 (253)
62 PF00795 CN_hydrolase: Carbon- 77.3 9.2 0.0002 30.0 6.4 69 158-229 26-113 (186)
63 cd07582 nitrilase_4 Uncharacte 77.3 20 0.00043 30.8 8.9 67 165-231 41-124 (294)
64 PRK15018 1-acyl-sn-glycerol-3- 77.2 9.1 0.0002 32.2 6.5 58 26-94 120-177 (245)
65 cd07573 CPA N-carbamoylputresc 75.3 23 0.00049 30.1 8.7 72 157-230 23-110 (284)
66 cd07566 ScNTA1_like Saccharomy 75.3 22 0.00048 30.7 8.6 66 165-231 35-116 (295)
67 TIGR00530 AGP_acyltrn 1-acyl-s 73.2 12 0.00027 27.2 5.8 52 31-93 75-126 (130)
68 cd07567 biotinidase_like bioti 73.1 26 0.00056 30.4 8.4 74 157-231 31-144 (299)
69 PF01553 Acyltransferase: Acyl 72.3 11 0.00024 27.6 5.3 52 30-92 76-127 (132)
70 PLN02504 nitrilase 71.2 28 0.00061 30.8 8.4 40 189-231 110-149 (346)
71 cd07565 aliphatic_amidase alip 69.2 35 0.00076 29.3 8.4 65 165-231 38-117 (291)
72 cd07579 nitrilase_1_R2 Second 68.5 41 0.00088 28.7 8.6 67 158-227 23-98 (279)
73 cd07585 nitrilase_7 Uncharacte 67.3 40 0.00087 28.1 8.3 69 158-229 24-104 (261)
74 smart00563 PlsC Phosphate acyl 67.2 14 0.00031 26.1 4.9 52 29-92 60-111 (118)
75 cd07571 ALP_N-acyl_transferase 66.1 28 0.0006 29.5 7.1 70 159-229 32-103 (270)
76 cd07569 DCase N-carbamyl-D-ami 66.0 42 0.00091 28.9 8.3 73 157-230 29-122 (302)
77 PRK13287 amiF formamidase; Pro 65.0 48 0.001 29.2 8.5 66 165-231 51-129 (333)
78 PRK13210 putative L-xylulose 5 64.7 33 0.00071 29.0 7.4 63 28-94 90-152 (284)
79 PRK09856 fructoselysine 3-epim 63.0 45 0.00098 28.1 7.9 64 27-94 85-148 (275)
80 cd02646 R3H_G-patch R3H domain 62.4 28 0.0006 21.9 4.9 41 32-90 2-42 (58)
81 PF10087 DUF2325: Uncharacteri 62.3 16 0.00034 25.7 4.1 21 74-94 61-81 (97)
82 PF01784 NIF3: NIF3 (NGG1p int 61.8 40 0.00088 28.1 7.2 58 146-204 34-95 (241)
83 cd07575 Xc-1258_like Xanthomon 61.7 57 0.0012 27.1 8.2 68 158-229 25-102 (252)
84 cd07578 nitrilase_1_R1 First n 61.3 65 0.0014 26.9 8.5 69 158-227 25-107 (258)
85 cd01821 Rhamnogalacturan_acety 58.3 45 0.00097 26.4 6.7 74 14-91 66-149 (198)
86 KOG0807|consensus 58.1 38 0.00083 28.4 6.1 76 156-231 37-125 (295)
87 cd07988 LPLAT_ABO13168-like Ly 56.7 34 0.00074 26.6 5.6 36 45-94 95-130 (163)
88 smart00481 POLIIIAc DNA polyme 56.3 50 0.0011 21.1 5.7 45 33-94 16-60 (67)
89 PF11305 DUF3107: Protein of u 55.7 14 0.00029 24.8 2.6 38 13-50 2-41 (74)
90 PRK13286 amiE acylamide amidoh 55.1 1.2E+02 0.0025 27.0 9.2 66 165-231 50-131 (345)
91 KOG0257|consensus 54.2 55 0.0012 29.6 6.9 67 74-150 191-259 (420)
92 TIGR00542 hxl6Piso_put hexulos 53.9 49 0.0011 28.0 6.6 63 28-94 90-152 (279)
93 PTZ00261 acyltransferase; Prov 53.2 39 0.00086 30.0 5.8 54 30-93 200-253 (355)
94 PRK13209 L-xylulose 5-phosphat 52.7 75 0.0016 26.9 7.5 63 28-94 95-157 (283)
95 PF10087 DUF2325: Uncharacteri 52.4 36 0.00078 23.8 4.6 39 165-207 47-85 (97)
96 cd07993 LPLAT_DHAPAT-like Lyso 52.1 52 0.0011 26.5 6.1 26 32-57 88-113 (205)
97 PF01261 AP_endonuc_2: Xylose 51.9 56 0.0012 25.8 6.4 62 28-94 67-131 (213)
98 cd07574 nitrilase_Rim1_like Un 51.9 66 0.0014 27.2 7.0 69 158-228 26-114 (280)
99 cd07986 LPLAT_ACT14924-like Ly 50.5 40 0.00086 27.4 5.2 53 37-94 90-142 (210)
100 cd07570 GAT_Gln-NAD-synth Glut 50.4 85 0.0018 26.1 7.4 20 157-176 23-42 (261)
101 cd07990 LPLAT_LCLAT1-like Lyso 49.7 43 0.00092 26.7 5.2 51 29-94 86-138 (193)
102 PF14488 DUF4434: Domain of un 49.2 70 0.0015 25.1 6.2 65 31-95 19-85 (166)
103 PF09587 PGA_cap: Bacterial ca 48.9 1.6E+02 0.0034 24.6 9.6 73 134-206 120-225 (250)
104 cd01832 SGNH_hydrolase_like_1 48.5 96 0.0021 24.0 7.1 74 14-91 68-148 (185)
105 cd04501 SGNH_hydrolase_like_4 48.5 77 0.0017 24.6 6.5 78 13-92 59-142 (183)
106 cd00019 AP2Ec AP endonuclease 48.4 79 0.0017 26.7 7.0 63 27-94 80-142 (279)
107 PRK09461 ansA cytoplasmic aspa 47.8 1.7E+02 0.0037 25.8 9.1 65 143-208 210-275 (335)
108 cd07580 nitrilase_2 Uncharacte 47.3 1.4E+02 0.003 25.0 8.3 69 157-228 23-106 (268)
109 PF09587 PGA_cap: Bacterial ca 45.9 98 0.0021 25.8 7.1 68 31-110 170-239 (250)
110 cd07992 LPLAT_AAK14816-like Ly 44.9 55 0.0012 26.2 5.2 26 32-57 97-122 (203)
111 COG1941 FrhG Coenzyme F420-red 44.5 1.4E+02 0.0031 24.9 7.4 84 13-102 3-91 (247)
112 PLN02901 1-acyl-sn-glycerol-3- 44.3 78 0.0017 25.7 6.1 47 37-94 114-160 (214)
113 COG0388 Predicted amidohydrola 43.9 1.7E+02 0.0037 24.6 8.3 71 157-231 26-110 (274)
114 PRK10528 multifunctional acyl- 42.0 97 0.0021 24.5 6.2 70 14-92 72-146 (191)
115 PRK10799 metal-binding protein 41.7 1.2E+02 0.0026 25.4 6.9 57 146-203 37-96 (247)
116 PF08821 CGGC: CGGC domain; I 41.4 1.3E+02 0.0027 21.8 6.0 55 31-95 51-106 (107)
117 COG4598 HisP ABC-type histidin 41.1 85 0.0018 25.4 5.4 52 33-94 158-209 (256)
118 TIGR00546 lnt apolipoprotein N 40.8 94 0.002 27.9 6.5 65 166-230 197-264 (391)
119 COG1121 ZnuC ABC-type Mn/Zn tr 40.3 85 0.0019 26.6 5.7 51 35-96 147-197 (254)
120 cd01828 sialate_O-acetylestera 39.7 1.7E+02 0.0036 22.3 7.8 73 14-92 49-128 (169)
121 TIGR00486 YbgI_SA1388 dinuclea 39.6 1.3E+02 0.0029 25.2 6.8 56 146-203 38-97 (249)
122 cd01836 FeeA_FeeB_like SGNH_hy 39.2 1.7E+02 0.0036 22.8 7.2 77 14-91 68-154 (191)
123 KOG2733|consensus 39.1 1.2E+02 0.0026 27.2 6.5 57 147-205 66-145 (423)
124 PRK12677 xylose isomerase; Pro 39.1 2.1E+02 0.0045 25.8 8.4 26 28-53 110-136 (384)
125 PF01081 Aldolase: KDPG and KH 39.0 69 0.0015 25.9 4.8 38 37-96 72-109 (196)
126 cd01822 Lysophospholipase_L1_l 38.1 1.2E+02 0.0025 23.2 6.1 70 14-92 65-139 (177)
127 smart00870 Asparaginase Aspara 37.9 2.1E+02 0.0046 25.0 8.1 64 143-208 212-275 (323)
128 cd06551 LPLAT Lysophospholipid 37.5 78 0.0017 24.6 5.0 52 35-96 90-142 (187)
129 cd01838 Isoamyl_acetate_hydrol 37.5 1.5E+02 0.0032 23.1 6.6 75 13-92 63-160 (199)
130 PF08140 Cuticle_1: Crustacean 36.8 48 0.001 19.3 2.5 17 217-233 1-17 (40)
131 PF02833 DHHA2: DHHA2 domain; 35.8 49 0.0011 24.3 3.3 49 2-51 21-72 (127)
132 PRK06015 keto-hydroxyglutarate 35.8 77 0.0017 25.8 4.6 38 37-96 68-105 (201)
133 COG1120 FepC ABC-type cobalami 35.6 1.1E+02 0.0023 26.0 5.6 55 32-96 143-197 (258)
134 PF10649 DUF2478: Protein of u 35.6 1.2E+02 0.0027 23.6 5.5 56 29-98 77-132 (159)
135 TIGR00674 dapA dihydrodipicoli 34.9 95 0.0021 26.5 5.4 56 29-97 77-133 (285)
136 CHL00200 trpA tryptophan synth 34.8 1.1E+02 0.0025 25.9 5.7 30 147-176 205-234 (263)
137 KOG0806|consensus 34.3 91 0.002 27.0 5.0 72 159-231 39-127 (298)
138 cd00950 DHDPS Dihydrodipicolin 33.6 97 0.0021 26.4 5.2 56 29-97 79-135 (284)
139 PF13472 Lipase_GDSL_2: GDSL-l 33.6 1.7E+02 0.0037 21.8 6.3 78 13-92 61-147 (179)
140 cd03770 SR_TndX_transposase Se 33.2 1.2E+02 0.0026 22.7 5.2 18 76-93 87-104 (140)
141 COG0708 XthA Exonuclease III [ 33.1 76 0.0017 27.0 4.3 37 14-56 1-37 (261)
142 cd00952 CHBPH_aldolase Trans-o 33.0 1.1E+02 0.0025 26.5 5.6 53 29-94 87-141 (309)
143 TIGR01766 tspaseT_teng_C trans 32.4 1.5E+02 0.0033 19.6 6.6 59 34-93 13-75 (82)
144 PRK08633 2-acyl-glycerophospho 32.3 94 0.002 32.0 5.8 50 34-94 500-549 (1146)
145 TIGR01182 eda Entner-Doudoroff 32.1 1E+02 0.0022 25.1 4.8 38 37-96 72-109 (204)
146 PF09142 TruB_C: tRNA Pseudour 32.0 54 0.0012 20.6 2.5 35 189-233 9-43 (56)
147 PF01408 GFO_IDH_MocA: Oxidore 31.7 1.7E+02 0.0037 20.7 5.7 21 74-94 99-119 (120)
148 cd01841 NnaC_like NnaC (CMP-Ne 31.7 2E+02 0.0044 21.9 6.5 76 14-92 52-134 (174)
149 COG0252 AnsB L-asparaginase/ar 31.1 3.2E+02 0.0069 24.4 8.0 63 143-208 230-294 (351)
150 PRK07534 methionine synthase I 30.9 3.2E+02 0.007 24.1 8.1 59 26-102 125-183 (336)
151 PRK10481 hypothetical protein; 30.8 2.2E+02 0.0047 23.6 6.6 26 26-51 71-96 (224)
152 cd00984 DnaB_C DnaB helicase C 30.8 1.3E+02 0.0028 24.6 5.4 66 31-99 108-174 (242)
153 PRK09997 hydroxypyruvate isome 30.0 3.2E+02 0.007 22.7 8.3 62 27-93 80-142 (258)
154 COG4100 Cystathionine beta-lya 30.0 83 0.0018 27.5 4.0 79 10-107 162-242 (416)
155 PF00809 Pterin_bind: Pterin b 30.0 77 0.0017 25.8 3.8 55 145-206 71-125 (210)
156 COG0800 Eda 2-keto-3-deoxy-6-p 29.5 89 0.0019 25.6 4.0 36 37-94 77-112 (211)
157 PRK11756 exonuclease III; Prov 29.4 93 0.002 26.1 4.4 37 14-56 1-37 (268)
158 TIGR00262 trpA tryptophan synt 29.1 1.7E+02 0.0038 24.6 5.9 30 147-176 201-230 (256)
159 COG1099 Predicted metal-depend 28.9 1.3E+02 0.0027 25.1 4.7 71 14-100 66-138 (254)
160 PF05221 AdoHcyase: S-adenosyl 28.8 1.3E+02 0.0028 25.7 4.9 82 140-229 41-133 (268)
161 PF14419 SPOUT_MTase_2: AF2226 28.8 1.3E+02 0.0028 23.5 4.5 45 15-60 1-47 (173)
162 PRK10438 C-N hydrolase family 28.7 2.6E+02 0.0057 23.3 7.0 62 165-229 33-103 (256)
163 PRK06552 keto-hydroxyglutarate 28.4 1.2E+02 0.0025 24.9 4.6 106 37-178 80-188 (213)
164 smart00642 Aamy Alpha-amylase 28.1 2.9E+02 0.0062 21.5 6.6 66 31-96 18-91 (166)
165 PLN00175 aminotransferase fami 27.9 1.7E+02 0.0036 26.5 6.0 21 74-94 206-226 (413)
166 COG0499 SAM1 S-adenosylhomocys 27.7 1.6E+02 0.0035 26.5 5.4 84 140-230 43-133 (420)
167 PRK05748 replicative DNA helic 27.6 1.4E+02 0.0031 27.4 5.6 67 31-99 298-366 (448)
168 cd07586 nitrilase_8 Uncharacte 27.4 3.6E+02 0.0078 22.4 7.9 20 157-176 23-42 (269)
169 PTZ00433 tyrosine aminotransfe 27.2 3.5E+02 0.0077 24.3 8.0 79 74-163 196-278 (412)
170 PF09391 DUF2000: Protein of u 27.2 59 0.0013 24.5 2.4 28 30-57 62-89 (133)
171 cd01825 SGNH_hydrolase_peri1 S 27.1 2.9E+02 0.0063 21.2 8.1 77 13-92 56-141 (189)
172 cd01834 SGNH_hydrolase_like_2 27.0 2.9E+02 0.0063 21.1 7.2 77 14-92 62-151 (191)
173 KOG3325|consensus 26.7 1.6E+02 0.0035 22.8 4.6 38 135-172 72-113 (183)
174 PF03796 DnaB_C: DnaB-like hel 26.6 80 0.0017 26.4 3.5 27 74-100 156-182 (259)
175 PRK07114 keto-hydroxyglutarate 26.6 1.4E+02 0.003 24.8 4.7 37 38-96 84-120 (222)
176 KOG3406|consensus 26.1 2.2E+02 0.0047 21.3 5.1 34 43-92 48-81 (134)
177 COG1123 ATPase components of v 26.0 1.8E+02 0.0039 27.6 5.8 53 34-96 161-213 (539)
178 PRK06348 aspartate aminotransf 25.9 2E+02 0.0044 25.5 6.1 21 74-94 181-201 (384)
179 PLN02274 inosine-5'-monophosph 25.8 2.4E+02 0.0052 26.6 6.7 61 142-204 236-296 (505)
180 cd07983 LPLAT_DUF374-like Lyso 25.6 1.6E+02 0.0036 23.0 5.0 43 38-94 90-132 (189)
181 PF00701 DHDPS: Dihydrodipicol 25.3 1.8E+02 0.0039 24.8 5.5 54 30-97 81-136 (289)
182 COG0371 GldA Glycerol dehydrog 25.2 3.1E+02 0.0068 24.6 6.9 87 151-245 66-155 (360)
183 PF13380 CoA_binding_2: CoA bi 25.2 2.1E+02 0.0046 20.7 5.1 45 30-94 64-108 (116)
184 PRK03170 dihydrodipicolinate s 25.1 1.8E+02 0.004 24.8 5.5 56 29-97 80-136 (292)
185 cd01125 repA Hexameric Replica 25.0 2.6E+02 0.0056 23.0 6.3 63 32-99 98-160 (239)
186 TIGR00640 acid_CoA_mut_C methy 24.2 1.2E+02 0.0026 22.7 3.7 20 36-55 44-63 (132)
187 smart00037 CNX Connexin homolo 24.1 36 0.00079 18.9 0.6 10 148-157 21-30 (34)
188 PRK09989 hypothetical protein; 24.1 4.2E+02 0.0091 22.0 7.8 61 28-93 81-142 (258)
189 TIGR03855 NAD_NadX aspartate d 23.9 3.5E+02 0.0077 22.4 6.7 50 31-95 47-96 (229)
190 PF10042 DUF2278: Uncharacteri 23.7 1.3E+02 0.0029 24.5 4.1 35 24-58 114-148 (206)
191 PRK13111 trpA tryptophan synth 23.7 2.5E+02 0.0054 23.8 5.9 31 145-176 201-231 (258)
192 PF07355 GRDB: Glycine/sarcosi 23.4 2.8E+02 0.006 24.7 6.2 64 141-205 47-119 (349)
193 COG1603 RPP1 RNase P/RNase MRP 23.4 1.5E+02 0.0033 24.6 4.3 43 37-94 89-132 (229)
194 cd01122 GP4d_helicase GP4d_hel 23.3 2E+02 0.0043 24.0 5.4 67 30-99 124-192 (271)
195 COG2089 SpsE Sialic acid synth 23.2 5.3E+02 0.012 22.8 7.7 67 26-93 24-108 (347)
196 PTZ00409 Sir2 (Silent Informat 23.0 1.2E+02 0.0026 25.9 3.8 30 68-98 182-211 (271)
197 TIGR00665 DnaB replicative DNA 22.9 1.8E+02 0.0039 26.5 5.3 66 31-99 290-356 (434)
198 cd00408 DHDPS-like Dihydrodipi 22.8 1.9E+02 0.0042 24.4 5.2 52 30-94 77-129 (281)
199 PLN02591 tryptophan synthase 22.7 2.9E+02 0.0063 23.3 6.1 33 144-176 189-221 (250)
200 PRK00881 purH bifunctional pho 22.6 2.3E+02 0.0049 26.8 5.7 53 145-204 453-507 (513)
201 PRK11096 ansB L-asparaginase I 22.5 4.8E+02 0.01 23.2 7.6 64 143-208 233-296 (347)
202 PF02449 Glyco_hydro_42: Beta- 22.5 1.7E+02 0.0037 26.1 4.9 56 34-95 12-67 (374)
203 COG0159 TrpA Tryptophan syntha 22.3 2.6E+02 0.0057 23.8 5.6 31 145-176 206-236 (265)
204 cd04724 Tryptophan_synthase_al 21.9 2.9E+02 0.0064 22.9 6.0 31 145-176 188-218 (242)
205 PF02581 TMP-TENI: Thiamine mo 21.9 2.6E+02 0.0057 21.9 5.4 145 32-208 12-160 (180)
206 PF00710 Asparaginase: Asparag 21.8 4.5E+02 0.0098 22.8 7.3 64 142-208 201-264 (313)
207 PF13407 Peripla_BP_4: Peripla 21.7 3E+02 0.0064 22.4 6.0 44 32-94 42-86 (257)
208 KOG0259|consensus 21.6 1.4E+02 0.003 27.1 3.9 72 74-154 218-289 (447)
209 PRK00302 lnt apolipoprotein N- 21.6 3.4E+02 0.0074 25.3 6.9 65 164-229 255-323 (505)
210 cd03465 URO-D_like The URO-D _ 21.6 4E+02 0.0087 23.0 7.1 48 38-90 174-223 (330)
211 TIGR02483 PFK_mixed phosphofru 21.6 2E+02 0.0044 25.3 5.1 15 41-55 182-196 (324)
212 PLN02510 probable 1-acyl-sn-gl 21.6 2E+02 0.0042 26.0 5.0 37 45-96 172-208 (374)
213 TIGR03128 RuMP_HxlA 3-hexulose 21.5 2.8E+02 0.006 22.1 5.7 41 37-94 68-108 (206)
214 KOG1505|consensus 21.5 1.4E+02 0.0031 26.5 4.1 47 29-92 136-183 (346)
215 PRK07004 replicative DNA helic 21.4 2E+02 0.0044 26.6 5.3 66 31-99 308-375 (460)
216 cd03334 Fab1_TCP TCP-1 like do 21.2 4.5E+02 0.0098 22.1 7.0 81 13-94 86-178 (261)
217 PF13788 DUF4180: Domain of un 21.1 3.4E+02 0.0074 19.8 6.6 68 13-92 5-75 (113)
218 cd04506 SGNH_hydrolase_YpmR_li 20.6 4.2E+02 0.0091 20.7 7.2 60 30-92 104-167 (204)
219 cd05562 Peptidases_S53_like Pe 20.6 4.6E+02 0.01 22.2 7.0 54 31-94 76-129 (275)
220 PF09895 DUF2122: RecB-family 20.5 1E+02 0.0022 22.3 2.4 20 36-55 10-29 (106)
221 TIGR00520 asnASE_II L-asparagi 20.5 6E+02 0.013 22.6 7.9 63 143-208 239-302 (349)
222 PHA01633 putative glycosyl tra 20.3 3.6E+02 0.0079 23.8 6.4 79 165-252 222-301 (335)
223 cd00954 NAL N-Acetylneuraminic 20.1 2.9E+02 0.0064 23.6 5.8 52 29-93 80-133 (288)
224 PLN02494 adenosylhomocysteinas 20.1 2.6E+02 0.0057 26.1 5.6 82 140-229 44-136 (477)
No 1
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=3.5e-49 Score=347.62 Aligned_cols=258 Identities=22% Similarity=0.339 Sum_probs=222.7
Q ss_pred cccEEEEEeeccC--------CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcc-----hhhhhhhhcCCChHHH
Q psy17819 12 KSFKIALVQMTVG--------KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK-----YFREYSEEIGSGITSK 78 (272)
Q Consensus 12 ~~iria~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~-----~~~~~~~~~~~~~~~~ 78 (272)
+.||||++|+++. ++.+.|++++.+++++|+++|+|||||||++++||... .+.++++...++++.+
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 3699999998732 48999999999999999999999999999999998531 2344555553378999
Q ss_pred HHHHHHHHcCcEEEEeeeeecc---CCeeEEEEEE---------EcccCCCCCCccccccccccCCCC-ceEEeeCCceE
Q psy17819 79 TLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNI 145 (272)
Q Consensus 79 ~l~~~a~~~~~~iv~Gs~~~~~---~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~i 145 (272)
.|+++|++++++|++| +.+++ ++.+||++++ ++.|.+++....+.|..+|.+|+. ..+|+++++|+
T Consensus 142 ~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gri 220 (363)
T cd07587 142 FCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKI 220 (363)
T ss_pred HHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceE
Confidence 9999999999999988 66765 3689999998 334555555555789999999985 88999999999
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC---------------
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN--------------- 210 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~--------------- 210 (272)
|++||||.+||+.++.++++|||++++|++|+......+|..++++||+||++||+.+|.+|.+.
T Consensus 221 G~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~ 300 (363)
T cd07587 221 AVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHK 300 (363)
T ss_pred EEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccc
Confidence 99999999999999999999999999999987654557899999999999999999999999642
Q ss_pred CCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819 211 SDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA 270 (272)
Q Consensus 211 ~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~ 270 (272)
+...|.|+|.|++|+|+++++.. .+++++++|+|++.+++.|.+++++.++||++|.+..
T Consensus 301 ~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~ 361 (363)
T cd07587 301 DFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFL 361 (363)
T ss_pred ccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHh
Confidence 11468899999999999998876 6899999999999999999999999999999998865
No 2
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=2.7e-48 Score=333.33 Aligned_cols=255 Identities=27% Similarity=0.453 Sum_probs=219.5
Q ss_pred cEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch----hhhhhhhcCCChHHHHHHHHHHHcCc
Q psy17819 14 FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY----FREYSEEIGSGITSKTLSNVAKEKEI 89 (272)
Q Consensus 14 iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~----~~~~~~~~~~~~~~~~l~~~a~~~~~ 89 (272)
||||++|++..++.++|++++.+++++|+++++|||||||++++||...+ +.+.+.....++..+.+.++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 69999999966999999999999999999999999999999999997532 22333333325788999999999999
Q ss_pred EEEEeeeeeccCCeeEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeCCceEEEEeecCCCChHHH
Q psy17819 90 FLVGGSIPELDNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELA 159 (272)
Q Consensus 90 ~iv~Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D~~~pe~~ 159 (272)
+|++| +++++++++||++++ .+.|.++|....+.|..+|++|+ .+.+|+++++|+|++||||.+||+..
T Consensus 81 ~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~ 159 (279)
T TIGR03381 81 VIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETA 159 (279)
T ss_pred EEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHH
Confidence 99999 778888899999988 23344555444457888999998 58999999999999999999999999
Q ss_pred HHHHHcCCcEEEeccccCCCC------CchhHHHHHHHHhhhCceEEEEEcCCcCCC---CCccceeeeEEECCCCceee
Q psy17819 160 QVYRKKGCDLLIYPGAFNMTT------GPLHWELLVRSRANDNQVYVAACSPAQDKN---SDYIAWGHSTVVDPWANILA 230 (272)
Q Consensus 160 ~~~~~~ga~lil~p~~~~~~~------~~~~~~~~~~~ra~en~~~vv~~n~~g~~~---~~~~~~G~S~i~~p~G~~~~ 230 (272)
+.++++||++|++|++|+..+ ....|..+.++||.||++|++++|++|.+. .+..|.|.|.|++|+|++++
T Consensus 160 r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~il~ 239 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADHTGELVA 239 (279)
T ss_pred HHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEECCCCcEee
Confidence 999999999999999875431 235788888999999999999999999752 46788999999999999999
Q ss_pred eCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhh
Q psy17819 231 TSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVT 269 (272)
Q Consensus 231 ~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~ 269 (272)
+.+ ++++++++++|++.++..|..+++++++||++|..|
T Consensus 240 ~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~~ 279 (279)
T TIGR03381 240 EAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGPL 279 (279)
T ss_pred cCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccCC
Confidence 986 488999999999999999999999999999999753
No 3
>PLN02798 nitrilase
Probab=100.00 E-value=1e-47 Score=330.57 Aligned_cols=258 Identities=34% Similarity=0.615 Sum_probs=225.3
Q ss_pred cccccEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCC-CCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcC
Q psy17819 10 TAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPEC-FNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKE 88 (272)
Q Consensus 10 m~~~iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 88 (272)
|+.+||||++|++..++.+.|++++++++++|+++++|||||||+ .++|+........+.... ++..+.++++|++++
T Consensus 7 ~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~-~~~~~~l~~~A~~~~ 85 (286)
T PLN02798 7 AGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLD-GPIMQRYRSLARESG 85 (286)
T ss_pred ccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCC-CHHHHHHHHHHHHcC
Confidence 666899999999977999999999999999999999999999998 457887655555555555 788999999999999
Q ss_pred cEEEEeeeeec--cCCeeEEEEEE--------------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecC
Q psy17819 89 IFLVGGSIPEL--DNDKVYNAATV--------------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYD 152 (272)
Q Consensus 89 ~~iv~Gs~~~~--~~~~~yns~~v--------------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D 152 (272)
++|++|+++++ +++++||++++ |++..+.|.+..+.|..+|.||+.+.+|+++++|+|++||||
T Consensus 86 i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~~IC~D 165 (286)
T PLN02798 86 LWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYD 165 (286)
T ss_pred eEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEEEEEEc
Confidence 99999967665 56789999988 333333454445568888999999999999999999999999
Q ss_pred CCChHHHHHHH-HcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeee
Q psy17819 153 MRFPELAQVYR-KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT 231 (272)
Q Consensus 153 ~~~pe~~~~~~-~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~ 231 (272)
.+||+..+.++ ++|||+|++|++++...+..+|..++++||+||++|++.+|++|....+..+.|.|+|++|+|+++++
T Consensus 166 ~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~ 245 (286)
T PLN02798 166 LRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVAR 245 (286)
T ss_pred ccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhh
Confidence 99999999998 99999999999987665667888899999999999999999999765567889999999999999998
Q ss_pred CCC--CceEEEEEechhHHHHhhhcCCCCCCcccchhhh
Q psy17819 232 SQF--EETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDV 268 (272)
Q Consensus 232 ~~~--~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~ 268 (272)
.+. +++++++++|++.++..|..+++++|+||+.|+.
T Consensus 246 ~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~~ 284 (286)
T PLN02798 246 LPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFWS 284 (286)
T ss_pred cCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhhhc
Confidence 863 6899999999999999999999999999998863
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.6e-47 Score=329.82 Aligned_cols=260 Identities=29% Similarity=0.443 Sum_probs=222.9
Q ss_pred cccEEEEEeeccC--------CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch----hhhhhhhcCCChHHHH
Q psy17819 12 KSFKIALVQMTVG--------KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY----FREYSEEIGSGITSKT 79 (272)
Q Consensus 12 ~~iria~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~----~~~~~~~~~~~~~~~~ 79 (272)
++||||++|++.. ++.++|++++.+++++|+++|+|||||||++++||.... +.+.+....+++..+.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 6799999999843 788999999999999999999999999999999986432 3333444422678999
Q ss_pred HHHHHHHcCcEEEEeeeeecc-CCeeEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeCCceEEEE
Q psy17819 80 LSNVAKEKEIFLVGGSIPELD-NDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLG 148 (272)
Q Consensus 80 l~~~a~~~~~~iv~Gs~~~~~-~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~ 148 (272)
|.++|++++++|++| +.+++ ++++||++++ .+.|.+++....+.|..+|.+|+ ...+|+++++|+|++
T Consensus 82 l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~ 160 (287)
T cd07568 82 FAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVY 160 (287)
T ss_pred HHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEE
Confidence 999999999999999 55654 5789999998 23345555544567888999998 589999999999999
Q ss_pred eecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCC--CccceeeeEEECCCC
Q psy17819 149 ICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNS--DYIAWGHSTVVDPWA 226 (272)
Q Consensus 149 IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~--~~~~~G~S~i~~p~G 226 (272)
||||.+||++.+.++++|||++++|++++.......|...+++||.||++|++.+|.+|.... ...|.|.|+|++|+|
T Consensus 161 ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii~p~G 240 (287)
T cd07568 161 ICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVDPRG 240 (287)
T ss_pred EEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeEEECCCc
Confidence 999999999999999999999999999875444467888889999999999999999987432 257889999999999
Q ss_pred ceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhhcC
Q psy17819 227 NILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL 272 (272)
Q Consensus 227 ~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~~~ 272 (272)
+++++.+ .+++++++++|++.++..|..+++++++||++|+-+.||
T Consensus 241 ~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~~~ 287 (287)
T cd07568 241 QFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELTKL 287 (287)
T ss_pred eEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhhcC
Confidence 9999987 579999999999999999999999999999999988776
No 5
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=2e-47 Score=330.41 Aligned_cols=262 Identities=26% Similarity=0.444 Sum_probs=223.8
Q ss_pred cccccccEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcc----hhhhhhhhcCCChHHHHHHHH
Q psy17819 8 MSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK----YFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 8 ~~m~~~iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~----~~~~~~~~~~~~~~~~~l~~~ 83 (272)
|.|++++|||++|++..+|.+.|++++.+++++|+++|+|||||||++++||.+. .+...+......+..+.+.++
T Consensus 1 ~~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (296)
T PLN02747 1 MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKL 80 (296)
T ss_pred CCCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHH
Confidence 6799999999999997789999999999999999999999999999999998753 233333333324688999999
Q ss_pred HHHcCcEEEEeeeeeccCCeeEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeCCceEEEEeecCC
Q psy17819 84 AKEKEIFLVGGSIPELDNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDM 153 (272)
Q Consensus 84 a~~~~~~iv~Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D~ 153 (272)
|++++++|++| +++++++.+||++++ .+.|.++|....+.|..+|.+|+ .+.+|+++++|+|++||||.
T Consensus 81 a~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~ 159 (296)
T PLN02747 81 AKELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQ 159 (296)
T ss_pred HHHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccc
Confidence 99999999999 678788899999998 23344444434456777899997 58999999999999999999
Q ss_pred CChHHHHHHHHcCCcEEEeccccCCCC------CchhHHHHHHHHhhhCceEEEEEcCCcCCC-------CCccceeeeE
Q psy17819 154 RFPELAQVYRKKGCDLLIYPGAFNMTT------GPLHWELLVRSRANDNQVYVAACSPAQDKN-------SDYIAWGHST 220 (272)
Q Consensus 154 ~~pe~~~~~~~~ga~lil~p~~~~~~~------~~~~~~~~~~~ra~en~~~vv~~n~~g~~~-------~~~~~~G~S~ 220 (272)
+||+..+.++++||++|++|++|+... ...+|..+.++||.||++|++++|.+|.+. ....|.|.|.
T Consensus 160 ~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~S~ 239 (296)
T PLN02747 160 WFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSF 239 (296)
T ss_pred cchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeeeeE
Confidence 999999999999999999999975421 235788889999999999999999998631 2467899999
Q ss_pred EECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819 221 VVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA 270 (272)
Q Consensus 221 i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~ 270 (272)
|++|+|+++++.+ .+++++++++|++.++..|..++.+.++||++|..+.
T Consensus 240 i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~ 290 (296)
T PLN02747 240 IAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLL 290 (296)
T ss_pred EECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHH
Confidence 9999999999986 5789999999999999999999999999999998753
No 6
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.9e-47 Score=339.86 Aligned_cols=258 Identities=22% Similarity=0.385 Sum_probs=223.6
Q ss_pred ccccEEEEEeeccC--------CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc----chhhhhhhhcCCChHHH
Q psy17819 11 AKSFKIALVQMTVG--------KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT----KYFREYSEEIGSGITSK 78 (272)
Q Consensus 11 ~~~iria~~Q~~~~--------~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~----~~~~~~~~~~~~~~~~~ 78 (272)
.+.||||++|.++. .+.+.|++++.+++++|+++++|||||||++++||.. ..+.+.++.++ ++..+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence 34799999999852 5899999999999999999999999999999999854 23445666666 78999
Q ss_pred HHHHHHHHcCcEEEEeeeeecc---CCeeEEEEEE---------EcccCCCCCCccccccccccCCCC-ceEEeeCCceE
Q psy17819 79 TLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNI 145 (272)
Q Consensus 79 ~l~~~a~~~~~~iv~Gs~~~~~---~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~i 145 (272)
.++++|++++++|++| +.+++ ++.+||++++ ++.|.+++....+.|..+|.+|+. ..+|+++++|+
T Consensus 163 ~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gki 241 (405)
T PLN00202 163 FLQELARKYNMVIVSP-ILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKI 241 (405)
T ss_pred HHHHHHHHCCeEEEEE-eeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeE
Confidence 9999999999999999 66753 4579999988 334555555445678899999986 68999999999
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC--------CC-----
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN--------SD----- 212 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~--------~~----- 212 (272)
|++||||.+|||.++.++.+|||+|++|++|+......+|..++++||+||++|++.+|.+|.+. ++
T Consensus 242 Gv~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~ 321 (405)
T PLN00202 242 AVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK 321 (405)
T ss_pred EEEEccccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEecccccccccccccccccccccc
Confidence 99999999999999999999999999999987654557899999999999999999999999742 11
Q ss_pred --ccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819 213 --YIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA 270 (272)
Q Consensus 213 --~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~ 270 (272)
..|.|.|.|++|+|+++++.. .+++++++|||++.+++.|..+++++++|+++|.++.
T Consensus 322 ~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~ 382 (405)
T PLN00202 322 DFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFF 382 (405)
T ss_pred ccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHH
Confidence 468999999999999999886 5899999999999999999999999999999998765
No 7
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=7e-47 Score=322.24 Aligned_cols=247 Identities=52% Similarity=0.888 Sum_probs=217.6
Q ss_pred EEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhh--hhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 15 KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY--SEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 15 ria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
|||++|++..+++++|++++.+++++|+++++|||||||++++||........ ..... ++..+.+.++|++++++|+
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i~i~ 79 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD-GPTLQALSELAKEHGIWLV 79 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccC-ChHHHHHHHHHHHCCeEEE
Confidence 79999999669999999999999999999999999999999999987655442 23344 6889999999999999999
Q ss_pred EeeeeeccC--CeeEEEEEE--------------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCCh
Q psy17819 93 GGSIPELDN--DKVYNAATV--------------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFP 156 (272)
Q Consensus 93 ~Gs~~~~~~--~~~yns~~v--------------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~p 156 (272)
+|+++++.+ +++||++++ |++..+.|....+.|..+|.+|+...+|+++++|+|++||+|.+||
T Consensus 80 ~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~~p 159 (265)
T cd07572 80 GGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFP 159 (265)
T ss_pred EeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEEEEEeccCcH
Confidence 998777766 899999988 2333233444456788899999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCc
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEE 236 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~ 236 (272)
+..+.++++|||++++|++++...+..+|..++++||.||+++++.+|++|.+.++..+.|.|+|++|+|+++.+.+..+
T Consensus 160 e~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il~~~~~~~ 239 (265)
T cd07572 160 ELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEGE 239 (265)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcHHHhhcCCCC
Confidence 99999999999999999998776667788889999999999999999999987667889999999999999999987669
Q ss_pred eEEEEEechhHHHHhhhcCCCCCCcc
Q psy17819 237 TIVYADIDLNTLNKVRDQIPTGKQKR 262 (272)
Q Consensus 237 ~~~~~~id~~~~~~~r~~~~~~~~~~ 262 (272)
+++++++|++.+++.|..+++++++|
T Consensus 240 ~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 240 GVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred cEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 99999999999999999999988875
No 8
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=7.2e-47 Score=326.84 Aligned_cols=256 Identities=27% Similarity=0.366 Sum_probs=215.1
Q ss_pred cEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchh-----------h---hhhhhcCCChHHH
Q psy17819 14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF-----------R---EYSEEIGSGITSK 78 (272)
Q Consensus 14 iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~-----------~---~~~~~~~~~~~~~ 78 (272)
||||++|++ .+++++.|++++.+++++|+++++|+|||||++++||....+ . +.+...+ ++..+
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVD-GPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCC-CHHHH
Confidence 699999998 678999999999999999999999999999999999875321 1 1223344 78899
Q ss_pred HHHHHHHHcCcEEEEeeeeeccCCeeEEEEEEE-----cccCCCCCCccccccccccCCC--CceEEeeCCceEEEEeec
Q psy17819 79 TLSNVAKEKEIFLVGGSIPELDNDKVYNAATVH-----LFDIAIPGGITFKESDVLSPGN--SFSMFNNGICNIGLGICY 151 (272)
Q Consensus 79 ~l~~~a~~~~~~iv~Gs~~~~~~~~~yns~~v~-----~~~~~~p~~~~~~e~~~~~~G~--~~~v~~~~~~~igv~IC~ 151 (272)
.|+++|++++++|++| +++++++++||++++. ....+.+-++.+.|..+|.+|+ ...+|+++++|+|++|||
T Consensus 80 ~l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~E~~~~~~g~~~~~~v~~~~~~kig~~ICy 158 (297)
T cd07564 80 RLAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPTHAERLVWGQGDGSGLRVVDTPIGRLGALICW 158 (297)
T ss_pred HHHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCCchhhhhcccCCCCCceEEecCCceEEEEEEh
Confidence 9999999999999999 6677788999999980 0111111123456888899987 578999999999999999
Q ss_pred CCCChHHHHHHHHcCCcEEEecccc--CCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC--------------CCccc
Q psy17819 152 DMRFPELAQVYRKKGCDLLIYPGAF--NMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN--------------SDYIA 215 (272)
Q Consensus 152 D~~~pe~~~~~~~~ga~lil~p~~~--~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~--------------~~~~~ 215 (272)
|.+|||+.+.++++||+++++++.. ....+..+|..++++||+||++|++.||.+|... +...+
T Consensus 159 D~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~ 238 (297)
T cd07564 159 ENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLG 238 (297)
T ss_pred hcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccccccccC
Confidence 9999999999999999999987653 2234568899999999999999999999998531 34668
Q ss_pred eeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCC-cccchhhhhhc
Q psy17819 216 WGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQ-KRYDLYDVTAK 271 (272)
Q Consensus 216 ~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~y~~~~~ 271 (272)
.|.|+|++|+|+++++++ ++++++++++|++.+++.|..++.+++ +||++|.+..|
T Consensus 239 ~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~ 296 (297)
T cd07564 239 GGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVD 296 (297)
T ss_pred CCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeC
Confidence 999999999999999986 789999999999999999999999999 69999988765
No 9
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.3e-46 Score=323.72 Aligned_cols=256 Identities=32% Similarity=0.510 Sum_probs=220.4
Q ss_pred cEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch----hhhhhh-hcCCChHHHHHHHHHHHcC
Q psy17819 14 FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY----FREYSE-EIGSGITSKTLSNVAKEKE 88 (272)
Q Consensus 14 iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~----~~~~~~-~~~~~~~~~~l~~~a~~~~ 88 (272)
||||++|+++.++++.|++++.+++++|.++++|||||||++++||.+.. +...+. ... .+..+.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIP-GPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCC-CHHHHHHHHHHHHCC
Confidence 69999999977999999999999999999999999999999999997643 222333 333 678899999999999
Q ss_pred cEEEEeeeeec-cCCeeEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeCCceEEEEeecCCCChH
Q psy17819 89 IFLVGGSIPEL-DNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPE 157 (272)
Q Consensus 89 ~~iv~Gs~~~~-~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D~~~pe 157 (272)
+++++| +.++ +++++||++++ ++.|.++|....+.|..+|.+|+ .+.+|+++++|+|++||||.+||+
T Consensus 80 i~iv~g-~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe 158 (284)
T cd07573 80 VVIPVS-LFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPE 158 (284)
T ss_pred EEEEec-ceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchH
Confidence 999999 4555 45689999998 22344444433456888899999 899999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeccccCCCC--------CchhHHHHHHHHhhhCceEEEEEcCCcCCC---CCccceeeeEEECCCC
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNMTT--------GPLHWELLVRSRANDNQVYVAACSPAQDKN---SDYIAWGHSTVVDPWA 226 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~~~--------~~~~~~~~~~~ra~en~~~vv~~n~~g~~~---~~~~~~G~S~i~~p~G 226 (272)
+.+.++++||+++++|+++++.. ....|..+.++||.||++|++.||++|... .+..|.|.|+|++|+|
T Consensus 159 ~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G 238 (284)
T cd07573 159 AARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIADPFG 238 (284)
T ss_pred HHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEEECCCC
Confidence 99999999999999999975531 225678888999999999999999999743 2688999999999999
Q ss_pred ceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhhc
Q psy17819 227 NILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271 (272)
Q Consensus 227 ~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~~ 271 (272)
+++++++ ++++++++++|++.++..|..+++++++|+++|+++.|
T Consensus 239 ~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~~ 284 (284)
T cd07573 239 EILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALTK 284 (284)
T ss_pred CeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhhC
Confidence 9999986 58999999999999999999999999999999998765
No 10
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=3.7e-46 Score=315.74 Aligned_cols=243 Identities=23% Similarity=0.346 Sum_probs=204.4
Q ss_pred ccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEE
Q psy17819 13 SFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFL 91 (272)
Q Consensus 13 ~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i 91 (272)
+||||++|++ ..+|.+.|++++.+++++| +++|||||||++++||....... ..+.++..+.|+++|+++++.
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~---~~~~~~~~~~l~~~A~~~~~~- 76 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAAS---SLPQDDVVAWMTAKAQQTNAL- 76 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhh---ccccchHHHHHHHHHHHcCeE-
Confidence 5999999999 5689999999999999986 79999999999999997654321 222256889999999999974
Q ss_pred EEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHH
Q psy17819 92 VGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYR 163 (272)
Q Consensus 92 v~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~ 163 (272)
++|++.+.+++.+||++++ .+.|.++. ..+.|..+|.||+++.+|+++++|+|++||||.+|||+.+.+
T Consensus 77 i~g~~~~~~~~~~~Nsa~vi~~~G~~~~y~K~hL~--~~~~E~~~f~~G~~~~v~~~~~~~iG~~ICyD~~fPe~~r~l- 153 (256)
T PRK10438 77 IAGSVALQTESGAVNRFLLVEPGGTVHFYDKRHLF--RMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNR- 153 (256)
T ss_pred EEEEEEEecCCCeEEEEEEEcCCCCEEEEeeeecC--CCCCccceecCCCCceEEEECCEEEEEEEEeecCCHHHHHhh-
Confidence 5675656666779999988 11122221 123678899999999999999999999999999999999986
Q ss_pred HcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEEEEE
Q psy17819 164 KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVYAD 242 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~ 242 (272)
+|+|++++|++|+.. ...+|..+.++||.||++|+++||.+|.+..+..|.|.|.|+||+|+++++.+ +++++++++
T Consensus 154 -~gad~i~~~s~~~~~-~~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~~~~~~e~~i~~~ 231 (256)
T PRK10438 154 -NDYDLALYVANWPAP-RSLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIATAEPHQATRIDAE 231 (256)
T ss_pred -cCCCEEEEecCCCCC-chHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEEcCCCCcEEEEEE
Confidence 799999999998754 34578889999999999999999999986556889999999999999999986 478999999
Q ss_pred echhHHHHhhhcCCCCCCcccchh
Q psy17819 243 IDLNTLNKVRDQIPTGKQKRYDLY 266 (272)
Q Consensus 243 id~~~~~~~r~~~~~~~~~~~~~y 266 (272)
+|++.+++.|..++.++++++..|
T Consensus 232 idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 232 LSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred ECHHHHHHHHHhCCccccCChhhc
Confidence 999999999999999999966544
No 11
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.5e-46 Score=314.25 Aligned_cols=243 Identities=38% Similarity=0.606 Sum_probs=212.8
Q ss_pred EEEEEeecc-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 15 KIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 15 ria~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
|||++|++. ..+++.|++++.+++++|.++++|||||||++++||.+......+.... ++..+.++++|+++++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~iv~ 79 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDG-GETVSFLSELAKKHGVNIVA 79 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccC-chHHHHHHHHHHHcCcEEEe
Confidence 699999995 5899999999999999999999999999999999998765544444555 78999999999999999999
Q ss_pred eeeeeccCCeeEEEEEE---------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHHH
Q psy17819 94 GSIPELDNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRK 164 (272)
Q Consensus 94 Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~ 164 (272)
|+.++.+++++||++++ ++.|.+++.. +.|..+|.+|+++.+|+++++|+|++||+|.+|||+.+.+++
T Consensus 80 G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~~v~~~~~~rig~~IC~D~~~pe~~r~~~~ 157 (253)
T cd07583 80 GSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDELEVFELDGGKVGLFICYDLRFPELFRKLAL 157 (253)
T ss_pred ceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCceEEEeCCeEEEEEEEeccccHHHHHHHHH
Confidence 96667778899999988 1122222211 367788999999999999999999999999999999999999
Q ss_pred cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEEEEec
Q psy17819 165 KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADID 244 (272)
Q Consensus 165 ~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~id 244 (272)
+|||++++|++|+.. ...+|..++++||+||++|++++|.+|. +++..|.|.|.|++|+|+++++.+.+++++++++|
T Consensus 158 ~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~G~-~~~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~i~ 235 (253)
T cd07583 158 EGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNRVGT-DGGNEFGGHSMVIDPWGEVLAEAGEEEEILTAEID 235 (253)
T ss_pred cCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcCccc-CCCceecceeEEECCCchhheecCCCceEEEEEec
Confidence 999999999997654 3567888889999999999999999998 45678899999999999999998778899999999
Q ss_pred hhHHHHhhhcCCCCCCcc
Q psy17819 245 LNTLNKVRDQIPTGKQKR 262 (272)
Q Consensus 245 ~~~~~~~r~~~~~~~~~~ 262 (272)
++.++++|..+++++++|
T Consensus 236 l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 236 LEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred HHHHHHHHHhCCchhhcC
Confidence 999999999999998876
No 12
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.1e-45 Score=312.91 Aligned_cols=243 Identities=30% Similarity=0.420 Sum_probs=211.1
Q ss_pred EEEEEeecc-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhh-hhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 15 KIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFR-EYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 15 ria~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
|||++|++. .++++.|++++.+++++|+++|+|||||||++++||...... ..+.... .++.+.+.++|++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPAD-GPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccC-ChHHHHHHHHHHHcCCEEE
Confidence 799999995 799999999999999999999999999999999999874332 2233444 7799999999999999999
Q ss_pred EeeeeeccCCeeEEEEEE---------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHH
Q psy17819 93 GGSIPELDNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYR 163 (272)
Q Consensus 93 ~Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~ 163 (272)
+| +++++++++||++++ .+.|.+++. +.|..+|.+|+++.+|+++++|+|++||+|.+||++.+.++
T Consensus 80 ~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~~v~~~~~~kig~~IC~D~~fpe~~~~~~ 155 (254)
T cd07576 80 VG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRFPVVELRGLRVGLLICYDVEFPELVRALA 155 (254)
T ss_pred Ee-ccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCceEEEECCeEEEEEEeecCCCCHHHHHHH
Confidence 99 788888899999998 111222211 25778899999999999999999999999999999999999
Q ss_pred HcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEEEEe
Q psy17819 164 KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADI 243 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~i 243 (272)
++|||++++|++++...+ .+|..++++||.||++|++++|.+|. +++..|.|.|+|++|+|+++++.+..++++++++
T Consensus 156 ~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~-~~~~~~~G~S~i~~p~G~il~~~~~~e~~~~~~i 233 (254)
T cd07576 156 LAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANRCGA-EDGLTYVGLSSIAGPDGTVLARAGRGEALLVADL 233 (254)
T ss_pred HCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcccCC-CCCceeeeeeEEECCCCCEeEecCCCCeEEEEEc
Confidence 999999999998765433 56778899999999999999999987 4567799999999999999999875599999999
Q ss_pred chhHHHHhhhcCCCCCCcccc
Q psy17819 244 DLNTLNKVRDQIPTGKQKRYD 264 (272)
Q Consensus 244 d~~~~~~~r~~~~~~~~~~~~ 264 (272)
|++.++..|..+++++++|++
T Consensus 234 d~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 234 DPAALAAARRENPYLADRRPE 254 (254)
T ss_pred CHHHHHhhhhcCchhhhcCCC
Confidence 999999999999999999875
No 13
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-45 Score=314.67 Aligned_cols=246 Identities=30% Similarity=0.457 Sum_probs=211.2
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhh---hhhhcCCChHHHHHHHHHHHcCcE
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE---YSEEIGSGITSKTLSNVAKEKEIF 90 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~a~~~~~~ 90 (272)
|||++|++ ..++.++|++++.+++++|.++++|||||||++++||...+..+ +......++..+.+.++|++++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 80 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAAELGLY 80 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHHHcCcE
Confidence 79999999 56899999999999999999999999999999999997654322 222222256889999999999999
Q ss_pred EEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCC-ceEEeeCCceEEEEeecCCCChHHHHH
Q psy17819 91 LVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQV 161 (272)
Q Consensus 91 iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~igv~IC~D~~~pe~~~~ 161 (272)
|++| +++++++++||++++ ++.|.+ +...|..+|.+|+. +.+|+++++|+|++||||.+||+..+.
T Consensus 81 i~~G-~~~~~~~~~yNs~~vi~~~g~~~~y~K~~----l~~~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r~ 155 (268)
T cd07580 81 IVAG-FAERDGDRLYNSAVLVGPDGVIGTYRKAH----LWNEEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFRL 155 (268)
T ss_pred EEee-cccccCCceEEEEEEECCCCcEEEEEEec----CCchhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHHH
Confidence 9999 778888899999998 122222 22257788999997 999999999999999999999999999
Q ss_pred HHHcCCcEEEeccccCCCCCc-----hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-C-
Q psy17819 162 YRKKGCDLLIYPGAFNMTTGP-----LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-F- 234 (272)
Q Consensus 162 ~~~~ga~lil~p~~~~~~~~~-----~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~- 234 (272)
++.+|||+|++|++|++..+. .+|..+.++||.||++|+++||.+|.+ .+..+.|.|+|++|+|+++++.+ .
T Consensus 156 ~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~~~~~~~~~~ 234 (268)
T cd07580 156 LALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE-RGQPFIGQSLIVGPDGWPLAGPASGD 234 (268)
T ss_pred HHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec-cCceEeeeeEEECCCCCeeeecCCCC
Confidence 999999999999998765432 467778899999999999999999974 56789999999999999999875 3
Q ss_pred CceEEEEEechhHHHHhhhcC--CCCCCcccchh
Q psy17819 235 EETIVYADIDLNTLNKVRDQI--PTGKQKRYDLY 266 (272)
Q Consensus 235 ~~~~~~~~id~~~~~~~r~~~--~~~~~~~~~~y 266 (272)
+++++++++|++.++..|... ++++++|+++|
T Consensus 235 ~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 235 EEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred CCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 799999999999999999884 89999999987
No 14
>PLN02504 nitrilase
Probab=100.00 E-value=2.9e-45 Score=321.28 Aligned_cols=251 Identities=23% Similarity=0.340 Sum_probs=210.3
Q ss_pred ccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchh-------------------hhhhhhcC
Q psy17819 13 SFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF-------------------REYSEEIG 72 (272)
Q Consensus 13 ~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~-------------------~~~~~~~~ 72 (272)
+||||++|++ ...+.++|++++++++++|+++|+|||||||++++||..... ...+..++
T Consensus 24 ~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (346)
T PLN02504 24 TVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVP 103 (346)
T ss_pred ceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccCC
Confidence 6999999999 568999999999999999999999999999999999964211 11233445
Q ss_pred CChHHHHHHHHHHHcCcEEEEeeeeeccCCeeEEEEEEE-----cccCCCCCCccccccccccCCC--CceEEeeCCceE
Q psy17819 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVH-----LFDIAIPGGITFKESDVLSPGN--SFSMFNNGICNI 145 (272)
Q Consensus 73 ~~~~~~~l~~~a~~~~~~iv~Gs~~~~~~~~~yns~~v~-----~~~~~~p~~~~~~e~~~~~~G~--~~~v~~~~~~~i 145 (272)
++..+.|.++|++++++|++| +.+++++++||++++. +...+.+-++.+.|..+|.+|. .+.+|+++++|+
T Consensus 104 -g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~~E~~~f~~G~g~~~~vf~~~~gri 181 (346)
T PLN02504 104 -GPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTALERLIWGFGDGSTIPVYDTPIGKI 181 (346)
T ss_pred -CHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCcccceeeecCCCCCCceEEcCCceE
Confidence 788999999999999999999 6688888999999980 0000111123346778899886 578999999999
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCC----------------
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDK---------------- 209 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~---------------- 209 (272)
|++||||.+||++.|.++.+||+++++|++++ ..+|..++++||+||++||+.||.+|..
T Consensus 182 G~lICyD~~fPe~~r~la~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~ 257 (346)
T PLN02504 182 GAVICWENRMPLLRTAMYAKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEE 257 (346)
T ss_pred EEEEeccchhHHHHHHHHHCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccc
Confidence 99999999999999999999999999998863 3679999999999999999999998621
Q ss_pred ---CCCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCC-cccchhhhh
Q psy17819 210 ---NSDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQ-KRYDLYDVT 269 (272)
Q Consensus 210 ---~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~-~~~~~y~~~ 269 (272)
.++..|.|.|+|++|+|+++++.. .++++++++||++.+++.|..++.+.| +||++|.+.
T Consensus 258 ~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~ 322 (346)
T PLN02504 258 DLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLT 322 (346)
T ss_pred cccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEE
Confidence 134678999999999999998876 578999999999999999999987766 599999874
No 15
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.5e-45 Score=311.49 Aligned_cols=237 Identities=31% Similarity=0.451 Sum_probs=194.8
Q ss_pred EEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 15 KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 15 ria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
|||++|++...|.++|++++.+++++|+++++|||||||++++||..... .+.... ++..+.|+++|++++++|++|
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~--~~~~~~-~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPAS--EAESDT-GPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHH--hcccCC-CHHHHHHHHHHHHcCeEEEEe
Confidence 69999999656999999999999999999999999999999999875422 233444 688999999999999999999
Q ss_pred eeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHHHcC
Q psy17819 95 SIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKG 166 (272)
Q Consensus 95 s~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~~g 166 (272)
+++++++++||++++ ++.|.++ ...|..+|.+|+.+.+|+++++|+|++||||++|||+.+.++++|
T Consensus 78 -~~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL----~~~E~~~f~~G~~~~v~~~~~~kiG~~ICyD~~fPe~~r~~a~~G 152 (279)
T cd07579 78 -FAEADGDGLYNSAVLVGPEGLVGTYRKTHL----IEPERSWATPGDTWPVYDLPLGRVGLLIGHDALFPEAGRVLALRG 152 (279)
T ss_pred -ceEccCCcEEEEEEEEeCCeeEEEEecccC----CCcchhhccCCCCCeeEEcCceeEEEEEeccccCcHHHHHHHHCC
Confidence 668778889999988 2223222 235778899999999999999999999999999999999999999
Q ss_pred CcEEEeccccCC-----------------CCC--chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCc
Q psy17819 167 CDLLIYPGAFNM-----------------TTG--PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWAN 227 (272)
Q Consensus 167 a~lil~p~~~~~-----------------~~~--~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (272)
|++|++|++|+. ..+ ..+|. ++++||+||++||+.||.+|.. ..+.|.|.|++|+|.
T Consensus 153 a~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~---~~~~G~S~ii~P~G~ 228 (279)
T cd07579 153 CDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA---RGYTGWSGVFGPDTF 228 (279)
T ss_pred CCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc---cccccccEEECCCeE
Confidence 999999998743 111 14666 6899999999999999999863 346899999999999
Q ss_pred eeee----CCCCceEEEEEechhHHHHhhhcCCCCCCcccchh
Q psy17819 228 ILAT----SQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266 (272)
Q Consensus 228 ~~~~----~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y 266 (272)
++.. ...++++++++||++.+++ ..+++.+||+++|
T Consensus 229 v~~~~~~~~~~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~ 268 (279)
T cd07579 229 AFPRQEAAIGDEEGIAWALIDTSNLDS---RYPTNVVRRKDLV 268 (279)
T ss_pred EcchhhcccCCCCcEEEEEecchhhcc---cCCchhhhhHHHH
Confidence 9743 4467889999999999888 3344444444444
No 16
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-44 Score=307.30 Aligned_cols=249 Identities=31% Similarity=0.458 Sum_probs=211.2
Q ss_pred EEEEEeecc-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhh-hhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 15 KIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY-SEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 15 ria~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
|||++|++. .++++.|++++++++++|+++|+|||||||++++||.+.+.... ..... .+..+.++++|++++++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~i~ 79 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPD-GPSTQALSDLARRYGLTIL 79 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCC-ChHHHHHHHHHHHcCcEEE
Confidence 799999995 68999999999999999999999999999999999987543322 23333 6789999999999999999
Q ss_pred EeeeeeccCCeeEEEEEEEcc----cCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHHHcCCc
Q psy17819 93 GGSIPELDNDKVYNAATVHLF----DIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCD 168 (272)
Q Consensus 93 ~Gs~~~~~~~~~yns~~v~~~----~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~ 168 (272)
+| +++++++++||++++... ..+.+.++...|..+|.+|+.+.+|+++++|+|++||+|.+||++.+.++++|||
T Consensus 80 ~G-~~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~~E~~~~~~G~~~~v~~~~~~rig~~IC~D~~~pe~~r~l~~~gad 158 (261)
T cd07585 80 AG-LIEKAGDRPYNTYLVCLPDGLVHRYRKLHLFRREHPYIAAGDEYPVFATPGVRFGILICYDNHFPENVRATALLGAE 158 (261)
T ss_pred Ee-ccccCCCceeEEEEEECCCCcEeEEeeecCCccccceEcCCCCCceEEcCCceEEEEEEcCCcCcHHHHHHHHCCCC
Confidence 99 668888899999998100 0011112233578899999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCC---CchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEEEEEec
Q psy17819 169 LLIYPGAFNMTT---GPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVYADID 244 (272)
Q Consensus 169 lil~p~~~~~~~---~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id 244 (272)
++++|++++... ....|...+++||.||++|++++|.+|.. ++..+.|.|+|++|+|+++++.+ ++++++++++|
T Consensus 159 lil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~~~G~S~i~~p~G~v~~~~~~~~e~~l~~~id 237 (261)
T cd07585 159 ILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEVFPGGAMILDPYGRVLAETTSGGDGMVVADLD 237 (261)
T ss_pred EEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCceecceEEEECCCCCEEeccCCCCCcEEEEEec
Confidence 999999876533 23567788899999999999999999974 47788999999999999999986 57999999999
Q ss_pred hhHHHHhhhc--CCCCCCcccchh
Q psy17819 245 LNTLNKVRDQ--IPTGKQKRYDLY 266 (272)
Q Consensus 245 ~~~~~~~r~~--~~~~~~~~~~~y 266 (272)
++.++..|.. .+++.++|+++|
T Consensus 238 ~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 238 LDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred HHHHHHhhccccCccccccCccCC
Confidence 9999999987 378999999887
No 17
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.1e-44 Score=302.99 Aligned_cols=240 Identities=35% Similarity=0.578 Sum_probs=208.5
Q ss_pred EEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch--hhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 16 IALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY--FREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 16 ia~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
||++|++..+|+++|++++.+++++|+++++|+|||||++++||..+. +...+..++ .++.+.+.++|+++++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLD-GPFVSALARLARELGITVVA 79 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCC-CHHHHHHHHHHHHcCeEEEE
Confidence 689999966999999999999999999999999999999999998754 233455565 78899999999999999999
Q ss_pred eeeeeccC-CeeEEEEEE---------EcccCCCCCCccccccccccCCCC--ceEEeeCCceEEEEeecCCCChHHHHH
Q psy17819 94 GSIPELDN-DKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNS--FSMFNNGICNIGLGICYDMRFPELAQV 161 (272)
Q Consensus 94 Gs~~~~~~-~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~--~~v~~~~~~~igv~IC~D~~~pe~~~~ 161 (272)
| ++++++ +++||++++ ++.|.+++....+.|..+|.+|+. ..+++++++|+|++||+|.+||++.+.
T Consensus 80 G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~~ 158 (255)
T cd07581 80 G-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELARA 158 (255)
T ss_pred E-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHHH
Confidence 9 667654 589999998 223434433334578889999998 778888899999999999999999999
Q ss_pred HHHcCCcEEEeccccCCCC-CchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEE
Q psy17819 162 YRKKGCDLLIYPGAFNMTT-GPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVY 240 (272)
Q Consensus 162 ~~~~ga~lil~p~~~~~~~-~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~ 240 (272)
++++||+++++|++|+... ..++|..++++||+||++|++.+|.+|. .+.|.|+|++|+|+++++.+.++++++
T Consensus 159 ~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~~~G~S~i~~p~G~i~~~~~~~~~~l~ 233 (255)
T cd07581 159 LALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----RGIGRSMVVDPLGVVLADLGEREGLLV 233 (255)
T ss_pred HHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----CcccceEEECCCcceeeecCCCCcEEE
Confidence 9999999999999886543 3578889999999999999999999875 567999999999999999877799999
Q ss_pred EEechhHHHHhhhcCCCCCCcc
Q psy17819 241 ADIDLNTLNKVRDQIPTGKQKR 262 (272)
Q Consensus 241 ~~id~~~~~~~r~~~~~~~~~~ 262 (272)
+++|++.+++.|...+++.++|
T Consensus 234 ~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 234 ADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred EEeCHHHHHHHHHhCcchhcCC
Confidence 9999999999999999998876
No 18
>KOG0807|consensus
Probab=100.00 E-value=5.5e-45 Score=289.25 Aligned_cols=264 Identities=38% Similarity=0.654 Sum_probs=238.0
Q ss_pred cccccccccEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC-CCCCcchhhhhhhhcCCChHHHHHHHHH
Q psy17819 6 RKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFN-CPYGTKYFREYSEEIGSGITSKTLSNVA 84 (272)
Q Consensus 6 ~~~~m~~~iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~a 84 (272)
+-|..++..+||++|+...+|..+|++...+++.+|++.|++++.|||.+- .|-++..-.+.+++.. +++.+...++|
T Consensus 8 r~Mat~~~~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~-~k~m~~y~ela 86 (295)
T KOG0807|consen 8 RTMATSKLKRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLD-GKFMEQYRELA 86 (295)
T ss_pred HHHhhcccceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccC-hHHHHHHHHHH
Confidence 445555458999999999999999999999999999999999999999883 4445544455677766 89999999999
Q ss_pred HHcCcEEEEeeeeeccC---CeeEEEEEE--------------EcccCCCCCCccccccccccCCCC-ceEEeeCCceEE
Q psy17819 85 KEKEIFLVGGSIPELDN---DKVYNAATV--------------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIG 146 (272)
Q Consensus 85 ~~~~~~iv~Gs~~~~~~---~~~yns~~v--------------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~~ig 146 (272)
++++|++-+|.+.++.+ .+++|+.++ |+|+.++|+.....|.....||.. .++++++-+|+|
T Consensus 87 r~~nIwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklG 166 (295)
T KOG0807|consen 87 RSHNIWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLG 166 (295)
T ss_pred HhcCeeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccc
Confidence 99999999998877754 689999988 999999999999999999999997 566999999999
Q ss_pred EEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCC
Q psy17819 147 LGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWA 226 (272)
Q Consensus 147 v~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (272)
..||||++|||+.-.+.+.||+++..||+|+...|..+|..+.|+||+|++|||+.+..+|........+|+|+|+||-|
T Consensus 167 laICYDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWG 246 (295)
T KOG0807|consen 167 LAICYDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWG 246 (295)
T ss_pred eeeeeeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchh
Confidence 99999999999999999999999999999999889999999999999999999999999997655666789999999999
Q ss_pred ceeeeCCCC--ceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819 227 NILATSQFE--ETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA 270 (272)
Q Consensus 227 ~~~~~~~~~--~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~ 270 (272)
.+++++++. .+++++|||++-+...|.+.|.+.+||+++|..+.
T Consensus 247 tVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~~ 292 (295)
T KOG0807|consen 247 TVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLFS 292 (295)
T ss_pred hhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhhc
Confidence 999999753 89999999999999999999999999999998754
No 19
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.4e-43 Score=304.76 Aligned_cols=235 Identities=21% Similarity=0.283 Sum_probs=200.2
Q ss_pred cEEEEEeecc-----CCCHHHHHHHHHHHHHHHHH--CCCcEEEeCCCCCCCCCcc--hhhhhhhhcCCChHHHHHHHHH
Q psy17819 14 FKIALVQMTV-----GKDKNKNLENAVRFIRKAAD--NGASLIVLPECFNCPYGTK--YFREYSEEIGSGITSKTLSNVA 84 (272)
Q Consensus 14 iria~~Q~~~-----~~~~~~n~~~~~~~i~~A~~--~~~dlvvfPE~~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~a 84 (272)
++||++|++. .+++++|++++.+++++|++ +++|||||||++++||..+ ...+.+...+ ++..+.|+++|
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~-~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACTVP-GPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccCCC-ChhHHHHHHHH
Confidence 5799999985 57999999999999999987 5999999999999999753 3444556666 78999999999
Q ss_pred HHcCcEEEEeeeeecc-C--CeeEEEEEE---------EcccCCCCCCccccccccccCCCC-ceEEeeC-CceEEEEee
Q psy17819 85 KEKEIFLVGGSIPELD-N--DKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNG-ICNIGLGIC 150 (272)
Q Consensus 85 ~~~~~~iv~Gs~~~~~-~--~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~-~~~igv~IC 150 (272)
+++++++++| +.+++ + +++||++++ ++.|.+ + +.+...|.+|+. ..++++. |+|+|++||
T Consensus 80 ~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~h----l-~~~~e~~~~G~~~~~v~~~~~g~riG~~IC 153 (291)
T cd07565 80 KEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLH----P-WVPIEPWYPGDLGTPVCEGPKGSKIALIIC 153 (291)
T ss_pred HHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecc----c-CCCcccccCCCCCceeeECCCCCEEEEEEE
Confidence 9999999999 66665 3 689999998 122222 1 122345889997 8899875 779999999
Q ss_pred cCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceee
Q psy17819 151 YDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA 230 (272)
Q Consensus 151 ~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~ 230 (272)
||.+|||+.|.++++|||++++|++|+.. ...+|..++++||.||++|++.||.+|. +++..+.|.|+|+||+|++++
T Consensus 154 yD~~fPe~~r~la~~GAdill~ps~~~~~-~~~~w~~~~~aRA~En~~~vv~aN~~G~-~~~~~~~G~S~ivdP~G~ila 231 (291)
T cd07565 154 HDGMYPEIARECAYKGAELIIRIQGYMYP-AKDQWIITNKANAWCNLMYTASVNLAGF-DGVFSYFGESMIVNFDGRTLG 231 (291)
T ss_pred cCCCCcHHHHHHHHCCCeEEEECCcCCCC-cchHHHHHHHHHHHhcCcEEEEeccccc-CCCceeeeeeEEECCCCCEEE
Confidence 99999999999999999999999998754 3578999999999999999999999997 456788999999999999999
Q ss_pred eCCC-CceEEEEEechhHHHHhhhcCCC
Q psy17819 231 TSQF-EETIVYADIDLNTLNKVRDQIPT 257 (272)
Q Consensus 231 ~~~~-~~~~~~~~id~~~~~~~r~~~~~ 257 (272)
+.+. +++++++++|++.++..|..+++
T Consensus 232 ~~~~~~e~i~~adid~~~~~~~R~~~~~ 259 (291)
T cd07565 232 EGGREPDEIVTAELSPSLVRDARKNWGS 259 (291)
T ss_pred eCCCCCCcEEEEEEcHHHHHHHHhcCCC
Confidence 9864 68899999999999999999976
No 20
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=6.9e-44 Score=309.02 Aligned_cols=255 Identities=23% Similarity=0.379 Sum_probs=210.5
Q ss_pred cccEEEEEeec-cCC--CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch-------hhhhhhh-cCCChHHHHH
Q psy17819 12 KSFKIALVQMT-VGK--DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY-------FREYSEE-IGSGITSKTL 80 (272)
Q Consensus 12 ~~iria~~Q~~-~~~--~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~-------~~~~~~~-~~~~~~~~~l 80 (272)
++||||++|++ ..+ +.++|++++.+++++|+++++|||||||++++||.+.+ ...+.+. ++ ++..+.+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 80 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMP-NPETQPL 80 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCC-ChhHHHH
Confidence 46899999997 544 88999999999999999999999999999999986421 1222222 44 6788999
Q ss_pred HHHHHHcCcEEEEeeeeec-cCC---eeEEEEEE---------EcccCCCCCCc--------cccccccccCCC-CceEE
Q psy17819 81 SNVAKEKEIFLVGGSIPEL-DND---KVYNAATV---------HLFDIAIPGGI--------TFKESDVLSPGN-SFSMF 138 (272)
Q Consensus 81 ~~~a~~~~~~iv~Gs~~~~-~~~---~~yns~~v---------~~~~~~~p~~~--------~~~e~~~~~~G~-~~~v~ 138 (272)
.++|+++++++++| +++. .++ ++||++++ .+.|.+++... .+.|+.+|.+|+ .+.+|
T Consensus 81 ~~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~ 159 (302)
T cd07569 81 FDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVF 159 (302)
T ss_pred HHHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceE
Confidence 99999999999999 6664 444 79999988 22233333221 234777899999 89999
Q ss_pred eeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCC---C------CchhHHHHHHHHhhhCceEEEEEcCCcCC
Q psy17819 139 NNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT---T------GPLHWELLVRSRANDNQVYVAACSPAQDK 209 (272)
Q Consensus 139 ~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~---~------~~~~~~~~~~~ra~en~~~vv~~n~~g~~ 209 (272)
+++++|+|++||||.+||++.+.++.+||+++++|+++... . ....|...+++||.||++|++.+|++|.+
T Consensus 160 ~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 239 (302)
T cd07569 160 RVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME 239 (302)
T ss_pred ecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC
Confidence 99999999999999999999999999999999997664321 1 12356677899999999999999999984
Q ss_pred CCCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhc-CCCCCCcccchhhhh
Q psy17819 210 NSDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQ-IPTGKQKRYDLYDVT 269 (272)
Q Consensus 210 ~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~-~~~~~~~~~~~y~~~ 269 (272)
++..+.|.|.|++|+|+++++.+ .+++++++++|++.+++.|.. .+++.++||++|..+
T Consensus 240 -~~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~ 300 (302)
T cd07569 240 -DGCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLI 300 (302)
T ss_pred -CCceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhh
Confidence 56788999999999999999986 478999999999999999995 799999999999865
No 21
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.2e-44 Score=304.74 Aligned_cols=248 Identities=26% Similarity=0.392 Sum_probs=210.6
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchh-hhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF-REYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
|||++|++ ..++++.|++++.+++++|+++++|+|||||++++||.+.+. .+.+.... .+..+.|.+.++ ++.++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~~~-~~~~~~l~~~a~--~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMHAD-DPRLQALAEASG--GICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcccc-hHHHHHHHHHcC--CCEEE
Confidence 69999999 568999999999999999999999999999999999987543 32333333 455555555553 79999
Q ss_pred Eeeeeecc-CCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHH
Q psy17819 93 GGSIPELD-NDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYR 163 (272)
Q Consensus 93 ~Gs~~~~~-~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~ 163 (272)
+| .+++. ++++||++++ .+.|.++|.+..+.|..+|.+|+...+|+++++|+|++||+|.+||+..+.++
T Consensus 78 ~G-~~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~~vf~~~~~~ig~~IC~D~~fp~~~~~~~ 156 (269)
T cd07586 78 FG-FVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDAWHPSLPYLLA 156 (269)
T ss_pred Ee-CeEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcceEEEeCCeEEEEEEEeccCCcHHHHHHH
Confidence 99 45654 5899999987 23355566655567888999999999999999999999999999999999999
Q ss_pred HcCCcEEEeccccCCCC------CchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCc
Q psy17819 164 KKGCDLLIYPGAFNMTT------GPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEE 236 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~------~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~ 236 (272)
++|||++++|+++++.. ...+|..+.++||+||++++++||.+|. +++..+.|+|+|++|+|+++.+.+ +++
T Consensus 157 ~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~-~~~~~~~G~S~ii~p~G~il~~~~~~~~ 235 (269)
T cd07586 157 LDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGV-EDGVYFWGGSRVVDPDGEVVAEAPLFEE 235 (269)
T ss_pred HCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecC-cCCceEeCCcEEECCCCCEEEecCCccc
Confidence 99999999999976532 1246888999999999999999999987 566778899999999999999886 478
Q ss_pred eEEEEEechhHHHHhhhcCCCCCCcccchhh
Q psy17819 237 TIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267 (272)
Q Consensus 237 ~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~ 267 (272)
+++++++|++.+++.|...+.+.++++++|+
T Consensus 236 ~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 236 DLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred cEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 9999999999999999999999999999986
No 22
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.6e-44 Score=302.09 Aligned_cols=242 Identities=33% Similarity=0.565 Sum_probs=207.5
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchh----hhhhhhcCCChHHHHHHHHHHHcCc
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF----REYSEEIGSGITSKTLSNVAKEKEI 89 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~----~~~~~~~~~~~~~~~l~~~a~~~~~ 89 (272)
|||++|++ .++|.+.|++++.+++++|+++++|||||||++++||.+..+ .+.+...+ ++..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPID-GPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCC-CcHHHHHHHHHHHcCe
Confidence 79999998 578999999999999999999999999999999999986432 22344444 6789999999999999
Q ss_pred EEEEeeeeeccC--CeeEEEEEEEccc-------CCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHH
Q psy17819 90 FLVGGSIPELDN--DKVYNAATVHLFD-------IAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQ 160 (272)
Q Consensus 90 ~iv~Gs~~~~~~--~~~yns~~v~~~~-------~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~ 160 (272)
+|++| .++..+ +++||++++ +. .+.+.++...|..+|.+|+.+.+|+++++|+|++||||.+||++.+
T Consensus 80 ~i~~G-~~~~~~~~~~~~Ns~~~--i~~~G~i~~~y~K~~l~~~e~~~~~~G~~~~~~~~~~~~~g~~IC~D~~fpe~~r 156 (258)
T cd07584 80 YIVCG-FVEKGGVPGKVYNSAVV--IDPEGESLGVYRKIHLWGLEKQYFREGEQYPVFDTPFGKIGVMICYDMGFPEVAR 156 (258)
T ss_pred EEEEe-ehcccCCCCceEEEEEE--ECCCCCEEeEEEeecCCchhhhhccCCCCCeeEEcCCceEEEEEEcCccChHHHH
Confidence 99999 556543 689999988 21 0111112335777899999999999999999999999999999999
Q ss_pred HHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEE
Q psy17819 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIV 239 (272)
Q Consensus 161 ~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~ 239 (272)
.++++|+|++++|++|+.. ..+.|...+++||+||++|++.+|.+|. .++..+.|.|.|++|+|+++++.+ ++++++
T Consensus 157 ~~~~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~~g~-~~~~~~~G~S~ii~p~G~il~~~~~~~~~~~ 234 (258)
T cd07584 157 ILTLKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNRVGN-EGDLVLFGKSKILNPRGQVLAEASEEAEEIL 234 (258)
T ss_pred HHHHCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECcccc-CCCceecceeEEECCCCceeeecCCCCCcEE
Confidence 9999999999999998654 3567888999999999999999999887 556778899999999999999986 569999
Q ss_pred EEEechhHHHHhhhcCCCCCCcc
Q psy17819 240 YADIDLNTLNKVRDQIPTGKQKR 262 (272)
Q Consensus 240 ~~~id~~~~~~~r~~~~~~~~~~ 262 (272)
++++|++.+++.|...|++.++|
T Consensus 235 ~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 235 YAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred EEEeCHHHHHHHHhhCchhhhcC
Confidence 99999999999999999998876
No 23
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1.9e-43 Score=298.84 Aligned_cols=241 Identities=27% Similarity=0.392 Sum_probs=206.9
Q ss_pred cEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 14 iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
||||++|++ .++|++.|++++.+++++|++ ++|||||||++++||.+... +.+...+ +...+.++++|+++++.++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~~~-~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEPMN-GPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-HhhcccC-ChHHHHHHHHHHHCCeEEE
Confidence 699999999 569999999999999999998 99999999999999987543 3445555 7899999999999999887
Q ss_pred EeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHHH
Q psy17819 93 GGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRK 164 (272)
Q Consensus 93 ~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~ 164 (272)
.| +++++++++||++++ .+.|.+++ ....|..+|.+|++..+|+++++|+|++||+|.+|||+.+.++.
T Consensus 78 ~~-~~~~~~~~~yNs~~~i~~~G~i~~y~K~~l~--~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~~pe~~r~~~~ 154 (252)
T cd07575 78 GS-LIIKEGGKYYNRLYFVTPDGEVYHYDKRHLF--RMAGEHKVYTAGNERVIVEYKGWKILLQVCYDLRFPVWSRNTND 154 (252)
T ss_pred EE-EEEccCCceEEEEEEECCCCCEEEEeeeecC--CCCCccceecCCCCceEEEECCEEEEEEEEeccCChHHHHhhcC
Confidence 66 778788899999988 11122221 11357788999999999999999999999999999999998763
Q ss_pred cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEEEEec
Q psy17819 165 KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADID 244 (272)
Q Consensus 165 ~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~id 244 (272)
|+++++|++|+.. ....|....++||+||++|++.||.+|.+..+..|.|.|.|++|+|+++++.+..++++++++|
T Consensus 155 --a~lil~~s~~~~~-~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~~l~~~~~~e~~i~~~id 231 (252)
T cd07575 155 --YDLLLYVANWPAP-RRAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYSGDSAVIDPLGEPLAEAEEDEGVLTATLD 231 (252)
T ss_pred --CCEEEEeCCCCCC-chHHHHHHhHHHHhhccceEEEecccccCCCCceEcceeEEECCCCceeeEcCCCceEEEEEEC
Confidence 9999999998654 3467888889999999999999999998665788899999999999999998655999999999
Q ss_pred hhHHHHhhhcCCCCCCccc
Q psy17819 245 LNTLNKVRDQIPTGKQKRY 263 (272)
Q Consensus 245 ~~~~~~~r~~~~~~~~~~~ 263 (272)
++.++..|..++++++++.
T Consensus 232 ~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 232 KEALQEFREKFPFLKDADS 250 (252)
T ss_pred HHHHHHHHhhCCcccccCc
Confidence 9999999999999988764
No 24
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.7e-43 Score=300.27 Aligned_cols=244 Identities=24% Similarity=0.327 Sum_probs=204.3
Q ss_pred cEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchh---hhhhhhcCCChHHHHHHHHHHHcCc
Q psy17819 14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF---REYSEEIGSGITSKTLSNVAKEKEI 89 (272)
Q Consensus 14 iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~ 89 (272)
+|||++|++ .++|.+.|++++.+++++|+++|+|+|||||++++||...+. ..+.+..+ ++..+.+.++|+++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i 79 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIP-GPTTARFAELAREHDC 79 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCC-CHHHHHHHHHHHHcCc
Confidence 589999999 578999999999999999999999999999999999986433 22344444 6788999999999999
Q ss_pred EEEEeeeeecc--CCeeEEEEEEEcccC------CCCCCccccccccccCCC-CceEEeeCCceEEEEeecCCCChHHHH
Q psy17819 90 FLVGGSIPELD--NDKVYNAATVHLFDI------AIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQ 160 (272)
Q Consensus 90 ~iv~Gs~~~~~--~~~~yns~~v~~~~~------~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D~~~pe~~~ 160 (272)
+|++| ++++. ++++||++++ +.. +.+.++.+.|..+|.+|+ ...+|+++++|+|++||+|.+||++.+
T Consensus 80 ~ii~G-~~~~~~~~~~~yNs~~v--i~~~g~~~~y~K~h~~~~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe~~r 156 (258)
T cd07578 80 YIVVG-LPEVDSRSGIYYNSAVL--IGPSGVIGRHRKTHPYISEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFETAR 156 (258)
T ss_pred EEEEe-cceecCCCCCeeEEEEE--ECCCCcEEeEeeecCCcccccccCCCCCCceEEECCCccEEEEEeeCCCchHHHH
Confidence 99999 66654 4789999988 111 111223346778899998 588999999999999999999999999
Q ss_pred HHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEE
Q psy17819 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVY 240 (272)
Q Consensus 161 ~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~ 240 (272)
.++++||+++++|++|.......++. .+||+||+++++.+|++|. +++..+.|.|++++|+|+++++.+.++++++
T Consensus 157 ~~~~~ga~ll~~ps~~~~~~~~~~~~---~~rA~en~~~vv~an~~G~-~~~~~~~G~S~ii~p~G~il~~~~~~e~~~~ 232 (258)
T cd07578 157 LLALGGADVICHISNWLAERTPAPYW---INRAFENGCYLIESNRWGL-ERGVQFSGGSCIIEPDGTIQASIDSGDGVAL 232 (258)
T ss_pred HHHHcCCCEEEEcCCCCCCCCcchHH---HHhhhcCCeEEEEecceec-cCCcceeeEEEEECCCCcEeeccCCCCceEE
Confidence 99999999999999986533222222 4899999999999999997 4567889999999999999998877789999
Q ss_pred EEechhHHHHhhhc-CCCCCCcccch
Q psy17819 241 ADIDLNTLNKVRDQ-IPTGKQKRYDL 265 (272)
Q Consensus 241 ~~id~~~~~~~r~~-~~~~~~~~~~~ 265 (272)
+++|++.++..|.. .++++++||++
T Consensus 233 a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 233 GEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred EEecchHhhhhhcccchhhhhhccCC
Confidence 99999999999975 78999999874
No 25
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.6e-43 Score=298.42 Aligned_cols=242 Identities=29% Similarity=0.461 Sum_probs=204.3
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcc---hhhhhhhhcCCChHHHHHHHHHHHcCcE
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK---YFREYSEEIGSGITSKTLSNVAKEKEIF 90 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~---~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 90 (272)
|||++|++ ..+|++.|++++.+++++|. +|||||||++++||... .+...++..++++..+.++++|++++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAY 77 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcE
Confidence 69999998 56899999999999999883 99999999999999763 2333444432278899999999999999
Q ss_pred EEEeeeeeccCCeeEEEEEEEcccC------CCCCCccccccccccCCC-CceEEeeCCceEEEEeecCCCChHHHHHHH
Q psy17819 91 LVGGSIPELDNDKVYNAATVHLFDI------AIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYR 163 (272)
Q Consensus 91 iv~Gs~~~~~~~~~yns~~v~~~~~------~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D~~~pe~~~~~~ 163 (272)
|++| +++++++++||++++ +.. +.+.++...|..+|.+|+ .+.+|+++++|+|++||||.+|||+.+.++
T Consensus 78 ii~G-~~~~~~~~~yNs~~v--i~~~Gi~~~y~K~~l~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r~~~ 154 (259)
T cd07577 78 IVAG-LPERDGDKFYNSAVV--VGPEGYIGIYRKTHLFYEEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAARTLA 154 (259)
T ss_pred EEec-ceeccCCceEEEEEE--ECCCccEeeEeeccCChhhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHHHHH
Confidence 9999 778888899999988 211 011112335778899999 799999999999999999999999999999
Q ss_pred HcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC---CCccceeeeEEECCCCceeeeCC-CCceEE
Q psy17819 164 KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN---SDYIAWGHSTVVDPWANILATSQ-FEETIV 239 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~---~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~ 239 (272)
++|||++++|+++.. ..|...+++||+||++|++++|.+|... .+..|.|.|+|++|+|+++.+.+ .+++++
T Consensus 155 ~~Gadli~~ps~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~e~~~ 230 (259)
T cd07577 155 LKGADIIAHPANLVL----PYCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLARAPEDGEEVL 230 (259)
T ss_pred HcCCCEEEECCccCC----chhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCEEeecCCCCCcEE
Confidence 999999999999753 2467778999999999999999998742 45678999999999999999986 578999
Q ss_pred EEEechhHHHHhh--hcCCCCCCcccchh
Q psy17819 240 YADIDLNTLNKVR--DQIPTGKQKRYDLY 266 (272)
Q Consensus 240 ~~~id~~~~~~~r--~~~~~~~~~~~~~y 266 (272)
++++|++.+++.| ..++.+.++||++|
T Consensus 231 ~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 231 VAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred EEEEchHHhhcccccccCchhhhcCcccC
Confidence 9999999988755 66789999999887
No 26
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.1e-43 Score=301.39 Aligned_cols=249 Identities=26% Similarity=0.407 Sum_probs=204.8
Q ss_pred cEEEEEeecc-C-CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCC---Ccchh------hhhhhhcCCChHHHHHHH
Q psy17819 14 FKIALVQMTV-G-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY---GTKYF------REYSEEIGSGITSKTLSN 82 (272)
Q Consensus 14 iria~~Q~~~-~-~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~---~~~~~------~~~~~~~~~~~~~~~l~~ 82 (272)
||||++|++. . .+++.|++++++++++|+++++|||||||++++|+ .+.+. ........ +++.+.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALT-PDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHH-HHHHHHHHH
Confidence 6999999995 3 79999999999999999999999999999999874 22221 11112223 678999999
Q ss_pred HHHHcCcEEEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCC
Q psy17819 83 VAKEKEIFLVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMR 154 (272)
Q Consensus 83 ~a~~~~~~iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~ 154 (272)
+|++++++|++|++++++++++||++++ ++.|.++.. ..+|...+.+|+++.+|+++++|+|++||||++
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v~~y~K~~l~~--~e~~~~~~~~G~~~~v~~~~~~~ig~~IC~D~~ 157 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTIGHQDKLHMTP--FEREEWGISGGDKLKVFDTDLGKIGILICYDSE 157 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCEEEEeeeccCc--hhhhcccccCCCCceEEecCCccEEEEEecccc
Confidence 9999999999997667778899999988 111221111 012334678999999999999999999999999
Q ss_pred ChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC---CCccceeeeEEECCC------
Q psy17819 155 FPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN---SDYIAWGHSTVVDPW------ 225 (272)
Q Consensus 155 ~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~---~~~~~~G~S~i~~p~------ 225 (272)
||++.+.++++||+++++|++++...+..+|...+++||.||++|++++|++|... .+..+.|+|.|++|.
T Consensus 158 fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~ 237 (280)
T cd07574 158 FPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVYTPCDFGFPE 237 (280)
T ss_pred cHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccceeecCCCCCCCC
Confidence 99999999999999999999876655556677778999999999999999999754 256789999999996
Q ss_pred CceeeeCC-CCceEEEEEechhHHHHhhhcCC--CCCCcccch
Q psy17819 226 ANILATSQ-FEETIVYADIDLNTLNKVRDQIP--TGKQKRYDL 265 (272)
Q Consensus 226 G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~--~~~~~~~~~ 265 (272)
|+++++.+ ++++++++++|++.+++.|..++ .++++|+|+
T Consensus 238 g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 238 DGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred CCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 88888875 56999999999999999999985 578888875
No 27
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=296.80 Aligned_cols=251 Identities=37% Similarity=0.572 Sum_probs=214.5
Q ss_pred ccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcch--hhhhhhhcCCChHHHHHHHHHHHcCc
Q psy17819 13 SFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY--FREYSEEIGSGITSKTLSNVAKEKEI 89 (272)
Q Consensus 13 ~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~a~~~~~ 89 (272)
.+|||++|++ ...|.++|++++.+++++|+++++|||||||++++||.+++ +.+........+..+.+.++|+++.+
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~ 81 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAEEGGV 81 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHHhCCe
Confidence 5899999999 58999999999999999999999999999999999999874 33333333337899999999998888
Q ss_pred EEEEeeeeeccCCeeEEEEEE---------EcccCCCCCCccccccccccCCCCc-eEEeeCCceEEEEeecCCCChHHH
Q psy17819 90 FLVGGSIPELDNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNSF-SMFNNGICNIGLGICYDMRFPELA 159 (272)
Q Consensus 90 ~iv~Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~~-~v~~~~~~~igv~IC~D~~~pe~~ 159 (272)
+|+.|+.+++. ..||++++ .+.|.+++.. .+.|+.++.||+.. .+|+++++|+|+.||||++|||+.
T Consensus 82 ~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~~ 158 (274)
T COG0388 82 IIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPELA 158 (274)
T ss_pred EEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHHH
Confidence 88887665554 56666555 4456666665 66799999999987 599999999999999999999988
Q ss_pred HHH-HHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCC-Cce
Q psy17819 160 QVY-RKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQF-EET 237 (272)
Q Consensus 160 ~~~-~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~-~~~ 237 (272)
+.+ +.+||+++++|++++...+.++|..+.++||.||+++++.+|.+|.......|.|+|.|++|+|+++++... +++
T Consensus 159 ~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~~~~~~~e~ 238 (274)
T COG0388 159 RRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAEAGEEEEG 238 (274)
T ss_pred HHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCccEEeecCCCCCc
Confidence 877 788999999999998877668999999999999999999999999854458899999999999999999976 799
Q ss_pred EEEEEechhHHHHhhhcCCCCCCcccchh
Q psy17819 238 IVYADIDLNTLNKVRDQIPTGKQKRYDLY 266 (272)
Q Consensus 238 ~~~~~id~~~~~~~r~~~~~~~~~~~~~y 266 (272)
++++++|++..++.|..++...+++...+
T Consensus 239 ~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 267 (274)
T COG0388 239 VLLADIDLAELAEVRRKIPVLKDRRRFDL 267 (274)
T ss_pred EEEEEECHHHHHHHHhhCcchhhcccchh
Confidence 99999999999999999997765544443
No 28
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=4.2e-43 Score=298.34 Aligned_cols=247 Identities=24% Similarity=0.285 Sum_probs=202.2
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcC-CChHHHHHHHHHHHcCcEEE
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG-SGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~iv 92 (272)
|||++|++ ..+|+++|++++.+++++|+++|+|||||||++++||.+.+......... ..+.++.|.+.+++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~ii 80 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAVV 80 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 69999999 57899999999999999999999999999999999998754332211110 02334444444445699999
Q ss_pred EeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHH-HHHHH
Q psy17819 93 GGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPEL-AQVYR 163 (272)
Q Consensus 93 ~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~-~~~~~ 163 (272)
+| .++++++++||++++ ++.|.+++.+..+.|..+|.+|+...+|+++++|+|++||||.+||+. .+.++
T Consensus 81 ~G-~~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~fpe~~~r~~~ 159 (261)
T cd07570 81 VG-LPLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWVPDPPSAELA 159 (261)
T ss_pred Ee-ceEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCCCeEEECCEEEEEEeecccCCCCchHHHHH
Confidence 99 667878899999988 334555555555678899999999999999999999999999999999 99999
Q ss_pred HcCCcEEEeccccCCCCCc-hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEEEE
Q psy17819 164 KKGCDLLIYPGAFNMTTGP-LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYAD 242 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~~~-~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~ 242 (272)
++||+++++|++++...+. .+|..+.++||.||++|++++|.+|. .++..|.|.|+|++|+|+++++.+.. +..+++
T Consensus 160 ~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-~~~~~~~G~S~ii~p~G~vl~~~~~~-~~~~~~ 237 (261)
T cd07570 160 LAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGG-QDDLVFDGGSFIADNDGELLAEAPRF-EEDLAD 237 (261)
T ss_pred HcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCC-CceEEEECceEEEcCCCCEEEecCcc-eEEEEE
Confidence 9999999999998765443 45678899999999999999999886 56778999999999999999988654 788999
Q ss_pred echhHHHHhhhcCCCCCCcccc
Q psy17819 243 IDLNTLNKVRDQIPTGKQKRYD 264 (272)
Q Consensus 243 id~~~~~~~r~~~~~~~~~~~~ 264 (272)
+|++.++..|...+...+..-+
T Consensus 238 id~~~~~~~r~~~~~~~~~~~~ 259 (261)
T cd07570 238 VDLDRLRSERRRNSSFLDEEAE 259 (261)
T ss_pred EEEecCcccccccCCCccchhh
Confidence 9999999999888766554433
No 29
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=5.3e-41 Score=283.92 Aligned_cols=239 Identities=41% Similarity=0.620 Sum_probs=204.8
Q ss_pred EEEEeecc-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhh---hhhhcCCChHHHHHHHHHHHcCcEE
Q psy17819 16 IALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE---YSEEIGSGITSKTLSNVAKEKEIFL 91 (272)
Q Consensus 16 ia~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~a~~~~~~i 91 (272)
||++|++. .++.++|++++.+++++|.++++|+|||||++++|+....... ...... ....+.++++|++++++|
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i~i 79 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELD-GPTLEALAELAKELGIYI 79 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCC-chHHHHHHHHHHHhCeEE
Confidence 68999995 5999999999999999999999999999999999998754432 233334 678999999999999999
Q ss_pred EEeeeeeccCCeeEEEEEEEcccC-------CCCCCcc-ccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHH
Q psy17819 92 VGGSIPELDNDKVYNAATVHLFDI-------AIPGGIT-FKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYR 163 (272)
Q Consensus 92 v~Gs~~~~~~~~~yns~~v~~~~~-------~~p~~~~-~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~ 163 (272)
++| .++++++++||++++ +.. +.+.++. +.|..++.+|+...+|+++++|+|++||+|.++|+..+.+.
T Consensus 80 i~G-~~~~~~~~~~N~~~~--i~~~G~i~~~~~K~~l~~~~E~~~~~~g~~~~~f~~~~~~ig~~IC~d~~~~~~~~~~~ 156 (253)
T cd07197 80 VAG-IAEKDGDKLYNTAVV--IDPDGEIIGKYRKIHLFDFGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFPELARELA 156 (253)
T ss_pred Eee-eEEccCCceEEEEEE--ECCCCeEEEEEEEeecCCCcccceecCCCCCceEEcCCceEEEEEEecCCCcHHHHHHH
Confidence 999 558888899999998 111 1111122 47888999999999999999999999999999999999999
Q ss_pred HcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCCCCceEEEEEe
Q psy17819 164 KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETIVYADI 243 (272)
Q Consensus 164 ~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~i 243 (272)
.+|+|++++|+++.... ..+|..+++.||.||++++++||++|. .++..+.|.|+|++|+|+++++.+..++++++++
T Consensus 157 ~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~-~~~~~~~G~S~i~~p~G~~~~~~~~~~~~~~~~i 234 (253)
T cd07197 157 LKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANRVGE-EGGLEFAGGSMIVDPDGEVLAEASEEEGILVAEL 234 (253)
T ss_pred HCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecCCCC-CCCccccceeEEECCCCceeeecCCCCcEEEEEe
Confidence 99999999999987643 578889999999999999999999987 5578899999999999999998864499999999
Q ss_pred chhHHHHhhhcCCCCCC
Q psy17819 244 DLNTLNKVRDQIPTGKQ 260 (272)
Q Consensus 244 d~~~~~~~r~~~~~~~~ 260 (272)
|++.+++.|..|+...+
T Consensus 235 d~~~~~~~r~~~~~~~~ 251 (253)
T cd07197 235 DLDELREARKRWSYLRD 251 (253)
T ss_pred CHHHHHHHHhhCCcccc
Confidence 99999999998754433
No 30
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.7e-41 Score=293.11 Aligned_cols=238 Identities=19% Similarity=0.250 Sum_probs=199.0
Q ss_pred cccEEEEEeecc-----CCCHHHHHHHHHHHHHHHH--HCCCcEEEeCCCCCCCCCc--chhhhhhhhcCCChHHHHHHH
Q psy17819 12 KSFKIALVQMTV-----GKDKNKNLENAVRFIRKAA--DNGASLIVLPECFNCPYGT--KYFREYSEEIGSGITSKTLSN 82 (272)
Q Consensus 12 ~~iria~~Q~~~-----~~~~~~n~~~~~~~i~~A~--~~~~dlvvfPE~~~~g~~~--~~~~~~~~~~~~~~~~~~l~~ 82 (272)
..++||++|+++ ..++..|++++.+.+++|+ ..++|||||||++++||.. ..+.+.+..++ ++..+.+.+
T Consensus 11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~-g~~~~~l~~ 89 (345)
T PRK13286 11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTIP-GEETAIFAE 89 (345)
T ss_pred CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccCC-CHHHHHHHH
Confidence 369999999983 3678999999999999987 4589999999999999654 34555667777 889999999
Q ss_pred HHHHcCcEEEEeeeeec----cCCeeEEEEEE---------EcccCCCCCCccccccccccCCCCceEEeeC-CceEEEE
Q psy17819 83 VAKEKEIFLVGGSIPEL----DNDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGNSFSMFNNG-ICNIGLG 148 (272)
Q Consensus 83 ~a~~~~~~iv~Gs~~~~----~~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~-~~~igv~ 148 (272)
+|+++++++++|...++ .++.+||++++ ++.|.+ | |.+...|.||+...+++++ |.|+|++
T Consensus 90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~-p----~~~~e~~~pG~~~~v~~~~~G~kiG~l 164 (345)
T PRK13286 90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIM-P----WCPIEGWYPGDCTYVSEGPKGLKISLI 164 (345)
T ss_pred HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeec-C----CchhhceecCCCCEEEeCCCCcEEEEE
Confidence 99999999988833233 24569999999 112221 1 2334567899998899985 5699999
Q ss_pred eecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCce
Q psy17819 149 ICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANI 228 (272)
Q Consensus 149 IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~ 228 (272)
||||.+|||++|.++++||++|++|++|+.+ ...+|..++++||+||++|++.||.+|. .++..|.|.|+|++|+|++
T Consensus 165 IC~D~~fPE~~R~la~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~~G~-~~~~~~~G~S~Ivdp~G~v 242 (345)
T PRK13286 165 ICDDGNYPEIWRDCAMKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANAAGF-DGVYSYFGHSAIIGFDGRT 242 (345)
T ss_pred EEecccChHHHHHHHHcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEecccc-cCCceeeeeEEEECCCCcE
Confidence 9999999999999999999999999997654 4578889999999999999999999997 4567889999999999999
Q ss_pred eeeCC-CCceEEEEEechhHHHHhhhcCCC
Q psy17819 229 LATSQ-FEETIVYADIDLNTLNKVRDQIPT 257 (272)
Q Consensus 229 ~~~~~-~~~~~~~~~id~~~~~~~r~~~~~ 257 (272)
+++.+ .++++++++||++.++++|..++.
T Consensus 243 la~~~~~~e~ii~adld~~~i~~~R~~~~~ 272 (345)
T PRK13286 243 LGECGEEEMGIQYAQLSVSQIRDARRNDQS 272 (345)
T ss_pred EEecCCCCCeEEEEEEeHHHHHHHHHhCCc
Confidence 99986 467999999999999999999954
No 31
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=1.5e-40 Score=290.17 Aligned_cols=236 Identities=23% Similarity=0.346 Sum_probs=198.4
Q ss_pred ccEEEEEeecc-----CCCHHHHHHHHHHHHHHHHHC--CCcEEEeCCCCCCCCCcchh--hhhhhhcCCChHHHHHHHH
Q psy17819 13 SFKIALVQMTV-----GKDKNKNLENAVRFIRKAADN--GASLIVLPECFNCPYGTKYF--REYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 13 ~iria~~Q~~~-----~~~~~~n~~~~~~~i~~A~~~--~~dlvvfPE~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~ 83 (272)
++|||++|+++ ..++++|++++.+++++|++. ++|||||||++++||..+.+ .+.+..++ ++..+.+.++
T Consensus 13 ~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~-g~~~~~l~~~ 91 (333)
T PRK13287 13 GVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCTVD-GPEVDAFAQA 91 (333)
T ss_pred ceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhcccCC-CHHHHHHHHH
Confidence 69999999985 378999999999999999864 89999999999999987532 33445566 7899999999
Q ss_pred HHHcCcEEEEeeeeecc-CCe-eEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeC-CceEEEEee
Q psy17819 84 AKEKEIFLVGGSIPELD-NDK-VYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNG-ICNIGLGIC 150 (272)
Q Consensus 84 a~~~~~~iv~Gs~~~~~-~~~-~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~-~~~igv~IC 150 (272)
|+++++++++| +.++. ++. +||++++ ++.|.+ | +.....|.||+ ..++|+++ |.|+|++||
T Consensus 92 a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h-~----~~p~~~~~pG~~~~~v~~~~~g~kiG~~IC 165 (333)
T PRK13287 92 CKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLH-P----WVPVEPWEPGDLGIPVCDGPGGSKLAVCIC 165 (333)
T ss_pred HHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecc-c----CCccccccCCCCCCceEECCCCceEEEEEE
Confidence 99999999998 55653 343 9999998 122222 1 12234578998 68899886 679999999
Q ss_pred cCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceee
Q psy17819 151 YDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA 230 (272)
Q Consensus 151 ~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~ 230 (272)
||.+|||+.|.++++||+++++|++++.. ..++|....++||.||++|++.+|.+|.+ ..+.+.|+|+|+||+|++++
T Consensus 166 yD~~fPe~~R~~a~~GAeill~~s~~~~~-~~~~w~~~~~arA~en~~~vv~an~~G~~-~~~~~~G~S~Iidp~G~vl~ 243 (333)
T PRK13287 166 HDGMFPEMAREAAYKGANVMIRISGYSTQ-VREQWILTNRSNAWQNLMYTASVNLAGYD-GVFYYFGEGQVCNFDGTTLV 243 (333)
T ss_pred ecccchHHHHHHHHCCCeEEEECCccCCc-chhHHHHHHHHHHHhCCcEEEEEeccccC-CCeeeeeeeEEECCCCcEEE
Confidence 99999999999999999999999988764 35778888999999999999999999974 56778899999999999999
Q ss_pred eCC-CCceEEEEEechhHHHHhhhcCCC
Q psy17819 231 TSQ-FEETIVYADIDLNTLNKVRDQIPT 257 (272)
Q Consensus 231 ~~~-~~~~~~~~~id~~~~~~~r~~~~~ 257 (272)
+.+ ++++++++++|++.++++|..+++
T Consensus 244 ~~~~~~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 244 QGHRNPWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred eCCCCCCeEEEEEEeHHHHHHHHHhcCc
Confidence 986 468999999999999999999876
No 32
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=5.8e-41 Score=287.94 Aligned_cols=230 Identities=22% Similarity=0.263 Sum_probs=187.5
Q ss_pred cEEEEEeec-cCCCH-------HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhh--hhh--------------
Q psy17819 14 FKIALVQMT-VGKDK-------NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE--YSE-------------- 69 (272)
Q Consensus 14 iria~~Q~~-~~~~~-------~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~--~~~-------------- 69 (272)
.|+|+||.. ++.+. ++|++++.+++++|+++++|||||||++++||....+.. .++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 378999997 66555 899999999999999999999999999999998654321 110
Q ss_pred --hcCCChHHHHHHHHHHHcCcEEEEeeeeecc-----------C-CeeEEEEEEEcccC-------CCCCCcccccccc
Q psy17819 70 --EIGSGITSKTLSNVAKEKEIFLVGGSIPELD-----------N-DKVYNAATVHLFDI-------AIPGGITFKESDV 128 (272)
Q Consensus 70 --~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~~-----------~-~~~yns~~v~~~~~-------~~p~~~~~~e~~~ 128 (272)
....++.++.|+++|++++++|++| +.++. + +.+||++++ ++. +.+-++ |.|..+
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~v--i~~~G~iv~~YrK~hL-f~E~~~ 156 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVV--FDRDGTLIARYRKYNL-FGEPGF 156 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEE--EcCCCCccceEeeccc-cccccc
Confidence 1111578899999999999999999 55652 2 369999999 221 111112 367788
Q ss_pred ccCCC-CceEEeeCCc-eEEEEeecCCCChHHHHHHHHc-CCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcC
Q psy17819 129 LSPGN-SFSMFNNGIC-NIGLGICYDMRFPELAQVYRKK-GCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSP 205 (272)
Q Consensus 129 ~~~G~-~~~v~~~~~~-~igv~IC~D~~~pe~~~~~~~~-ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~ 205 (272)
|.+|+ .+.+|+++++ |+|++||||++|||..+.++++ ||+++++|++|+...+..+|..+.++||+||++||+.||.
T Consensus 157 ~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N~ 236 (299)
T cd07567 157 DVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAANY 236 (299)
T ss_pred cCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEecC
Confidence 99996 6899999975 9999999999999999999999 9999999999875444568999999999999999999999
Q ss_pred CcCCCCCccceeeeEEECCC-CceeeeCC--CCceEEEEEechhHHHHh
Q psy17819 206 AQDKNSDYIAWGHSTVVDPW-ANILATSQ--FEETIVYADIDLNTLNKV 251 (272)
Q Consensus 206 ~g~~~~~~~~~G~S~i~~p~-G~~~~~~~--~~~~~~~~~id~~~~~~~ 251 (272)
+|.. .+.|+|.|++|+ |+++++.+ .++++++++||++..++.
T Consensus 237 ~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~~ 281 (299)
T cd07567 237 NNPS----AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRRP 281 (299)
T ss_pred CCCc----CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCccccc
Confidence 9852 356999999999 99999975 368899999999877765
No 33
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.4e-40 Score=284.17 Aligned_cols=246 Identities=23% Similarity=0.258 Sum_probs=197.0
Q ss_pred EEEEEeecc-----CCCHHHHHHHHHHHHHHHHH-----CCCcEEEeCCCCCCCCCcchh------hhhhhhcCCChHHH
Q psy17819 15 KIALVQMTV-----GKDKNKNLENAVRFIRKAAD-----NGASLIVLPECFNCPYGTKYF------REYSEEIGSGITSK 78 (272)
Q Consensus 15 ria~~Q~~~-----~~~~~~n~~~~~~~i~~A~~-----~~~dlvvfPE~~~~g~~~~~~------~~~~~~~~~~~~~~ 78 (272)
.++.+|+.. ++|++.|++++.+++++|++ +++|||||||++++||...+. .+.+..++ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~-~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIP-GPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCC-CHHHH
Confidence 467788863 37999999999999999987 479999999999999987542 33455666 88999
Q ss_pred HHHHHHHHcCcEEEEeeeeeccC---CeeEEEEEE---------EcccCCCCCC-------ccccc-cccccCC-C-Cce
Q psy17819 79 TLSNVAKEKEIFLVGGSIPELDN---DKVYNAATV---------HLFDIAIPGG-------ITFKE-SDVLSPG-N-SFS 136 (272)
Q Consensus 79 ~l~~~a~~~~~~iv~Gs~~~~~~---~~~yns~~v---------~~~~~~~p~~-------~~~~e-~~~~~~G-~-~~~ 136 (272)
.|.++|++++++|++|+ .++++ +++||++++ ++.|.++... ..+.| ...+.+| . .+.
T Consensus 81 ~l~~~A~~~~i~iv~G~-~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~ 159 (294)
T cd07582 81 ALGEKAKELNVYIAANA-YERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFP 159 (294)
T ss_pred HHHHHHHHcCEEEEEee-eeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccccce
Confidence 99999999999999995 46543 679999998 2223332210 01111 1224454 3 368
Q ss_pred EEeeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCC---Cc
Q psy17819 137 MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNS---DY 213 (272)
Q Consensus 137 v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~---~~ 213 (272)
+++++++|+|++||||.+|||..+.++++|||+|++|++++.......|..++++||+||++|++.+|.+|.... ..
T Consensus 160 v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~ 239 (294)
T cd07582 160 VADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGSPYPAD 239 (294)
T ss_pred eecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCcccccCc
Confidence 899999999999999999999999999999999999999876544567888899999999999999999886432 36
Q ss_pred cceeeeEEECCCCceeeeCC-C-CceEEEEEechhHHHHhhhcCCC---CCCcc
Q psy17819 214 IAWGHSTVVDPWANILATSQ-F-EETIVYADIDLNTLNKVRDQIPT---GKQKR 262 (272)
Q Consensus 214 ~~~G~S~i~~p~G~~~~~~~-~-~~~~~~~~id~~~~~~~r~~~~~---~~~~~ 262 (272)
.|.|.|+|++|+|+++++.+ . +++++++++|++.+++.|..+++ +++.|
T Consensus 240 ~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~~~~~~~ 293 (294)
T cd07582 240 SFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHNWLKDLR 293 (294)
T ss_pred eecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccchhhhhc
Confidence 78899999999999999986 4 68899999999999999999864 44444
No 34
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=6e-40 Score=310.03 Aligned_cols=249 Identities=23% Similarity=0.273 Sum_probs=209.2
Q ss_pred cccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcC-CChHHHHHHHHHHHcCc
Q psy17819 12 KSFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG-SGITSKTLSNVAKEKEI 89 (272)
Q Consensus 12 ~~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~ 89 (272)
+.||||++|++ ..+|++.|++++.+++++|+++++|||||||++++||.++++........ ..+.++.|.++|+++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~i 90 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcCE
Confidence 37999999999 57999999999999999999999999999999999999876542211111 03678889999999999
Q ss_pred EEEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCc-----------------eEEee---C
Q psy17819 90 FLVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSF-----------------SMFNN---G 141 (272)
Q Consensus 90 ~iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~-----------------~v~~~---~ 141 (272)
.|++| ++++.++++||++++ .+.|.++|++..|.|+++|+||+.. .+|++ +
T Consensus 91 ~ivvG-~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~~~~~~ 169 (679)
T PRK02628 91 LLVVG-APLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFEAEDLP 169 (679)
T ss_pred EEEEe-eEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEEecccC
Confidence 99999 777778899999988 4567788888889999999999863 24655 6
Q ss_pred CceEEEEeecCCCChHHH-HHHHHcCCcEEEeccccCCCCCchhHH-HHHHHHhhhCceEEEEEcC-CcCCCCCccceee
Q psy17819 142 ICNIGLGICYDMRFPELA-QVYRKKGCDLLIYPGAFNMTTGPLHWE-LLVRSRANDNQVYVAACSP-AQDKNSDYIAWGH 218 (272)
Q Consensus 142 ~~~igv~IC~D~~~pe~~-~~~~~~ga~lil~p~~~~~~~~~~~~~-~~~~~ra~en~~~vv~~n~-~g~~~~~~~~~G~ 218 (272)
++++|+.||+|+|||+.. +.++.+||++|++|++|+...+..+|+ .+.+++|.+++.+++++|+ +|..+++.+|.|+
T Consensus 170 g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~~~~vf~G~ 249 (679)
T PRK02628 170 GFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGESTTDLAWDGQ 249 (679)
T ss_pred CcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCCCCeEEeCe
Confidence 899999999999999984 889999999999999998877766665 6777888888767777764 5545667899999
Q ss_pred eEEECCCCceeeeCC---CCceEEEEEechhHHHHhhhcCCCCCCcc
Q psy17819 219 STVVDPWANILATSQ---FEETIVYADIDLNTLNKVRDQIPTGKQKR 262 (272)
Q Consensus 219 S~i~~p~G~~~~~~~---~~~~~~~~~id~~~~~~~r~~~~~~~~~~ 262 (272)
|.|++ +|+++++.+ .+++++++++|++.++..|...+.+.+++
T Consensus 250 S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 250 TLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred EEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 99998 999999986 45679999999999999998888887766
No 35
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=9.9e-40 Score=303.08 Aligned_cols=229 Identities=25% Similarity=0.328 Sum_probs=199.7
Q ss_pred cEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH--cCcE
Q psy17819 14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE--KEIF 90 (272)
Q Consensus 14 iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~--~~~~ 90 (272)
||||++|++ .+++++.|++++.+++++|+++|+|||||||++++||.+.++....... ....+.+.++|++ +++.
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~--~~~~~~l~~La~~~~~~i~ 78 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL--AACEAALERLAAATAGGPA 78 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH--HHHHHHHHHHHHhcCCCCE
Confidence 699999999 5799999999999999999999999999999999999886654322222 3456778888887 6999
Q ss_pred EEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHH
Q psy17819 91 LVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVY 162 (272)
Q Consensus 91 iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~ 162 (272)
+++| .++++++++||++++ .+.|.++|.+..|.|..+|++|+...+|+++++|+|++||+|.+||++.+.+
T Consensus 79 ii~G-~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~~~~~~~g~rigv~IC~D~~~pe~~r~l 157 (540)
T PRK13981 79 VLVG-HPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEPGVVELKGVRIGVPICEDIWNPEPAETL 157 (540)
T ss_pred EEEe-CcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCceEEEECCEEEEEEEehhhcCCcHHHHH
Confidence 9999 677788899999988 3445667777778899999999999999999999999999999999999999
Q ss_pred HHcCCcEEEeccccCCCCCc-hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEEE
Q psy17819 163 RKKGCDLLIYPGAFNMTTGP-LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVY 240 (272)
Q Consensus 163 ~~~ga~lil~p~~~~~~~~~-~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~ 240 (272)
+.+||+++++|+++++..+. .+|..++++||.||++|+++||.+|. .++..|.|.|+|++|+|+++++.+ .++++++
T Consensus 158 a~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~-~~~~~f~G~S~i~dp~G~il~~~~~~~e~~l~ 236 (540)
T PRK13981 158 AEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGG-QDELVFDGASFVLNADGELAARLPAFEEQIAV 236 (540)
T ss_pred HHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccC-CCceEEeCceEEECCCCCEeeecCCCCCcEEE
Confidence 99999999999998765443 45668899999999999999999997 567889999999999999999986 5799999
Q ss_pred EEechh
Q psy17819 241 ADIDLN 246 (272)
Q Consensus 241 ~~id~~ 246 (272)
+++|++
T Consensus 237 ~did~~ 242 (540)
T PRK13981 237 VDFDRG 242 (540)
T ss_pred EEEeec
Confidence 999985
No 36
>KOG0806|consensus
Probab=100.00 E-value=5.4e-40 Score=272.95 Aligned_cols=258 Identities=38% Similarity=0.635 Sum_probs=238.2
Q ss_pred ccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc-chhhhhhhhcCC----ChHHHHHHHHHHH
Q psy17819 13 SFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT-KYFREYSEEIGS----GITSKTLSNVAKE 86 (272)
Q Consensus 13 ~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~-~~~~~~~~~~~~----~~~~~~l~~~a~~ 86 (272)
++++|++|.. ...+..+|++..+..+++|++++++||||||.++.||.. +.+..+.+.+++ .+..+.+..+|++
T Consensus 13 ~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~~ 92 (298)
T KOG0806|consen 13 NATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAER 92 (298)
T ss_pred ccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHhh
Confidence 5899999998 567899999999999999999999999999999999999 888888888873 4899999999999
Q ss_pred cCcEEEEeeeeecc-CCeeEEEEEE--------------EcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeec
Q psy17819 87 KEIFLVGGSIPELD-NDKVYNAATV--------------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICY 151 (272)
Q Consensus 87 ~~~~iv~Gs~~~~~-~~~~yns~~v--------------~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~ 151 (272)
++++++.|++++.. +++.||+..+ |+|+.+.|+...|.|...|.+|..+.+++...+|||+.|||
T Consensus 93 ~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gkfGi~IC~ 172 (298)
T KOG0806|consen 93 LSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGKFGIFICF 172 (298)
T ss_pred ceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCceEEEEEe
Confidence 99999999887776 6789999877 78999899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHcCCcEEEeccccC---CCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCcccee-eeEEECCCCc
Q psy17819 152 DMRFPELAQVYRKKGCDLLIYPGAFN---MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWG-HSTVVDPWAN 227 (272)
Q Consensus 152 D~~~pe~~~~~~~~ga~lil~p~~~~---~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G-~S~i~~p~G~ 227 (272)
|++|+|..+.+++.||++|+.|++|. ...+..+|..++++||..|..++..++..+.....+...| +|.+++|.|+
T Consensus 173 Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s~~y~~~gshs~~~~p~gk 252 (298)
T KOG0806|consen 173 DIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGSGIYAPRGSHSIMVNPTGK 252 (298)
T ss_pred cccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCceeeecCCcceeecCCcce
Confidence 99999999999999999999999998 4556899999999999999999999998887777788888 9999999999
Q ss_pred eeeeCCCCceEEEEEechhHHHHhhhcCCCCCCcccchhhhhh
Q psy17819 228 ILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTA 270 (272)
Q Consensus 228 ~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~~ 270 (272)
+++....++++.++++|++.+++.|..+++++++|+++|++..
T Consensus 253 vl~a~~~~~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~ 295 (298)
T KOG0806|consen 253 VLAAAVEKEEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLDL 295 (298)
T ss_pred EeeeccCCCccccccCCHHHHHHHhcccchhhccchhhhhhhc
Confidence 9999877777999999999999999999999999999998754
No 37
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.8e-37 Score=292.55 Aligned_cols=243 Identities=15% Similarity=0.156 Sum_probs=195.0
Q ss_pred ccEEEEEeecc-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHH---HcC
Q psy17819 13 SFKIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAK---EKE 88 (272)
Q Consensus 13 ~iria~~Q~~~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~ 88 (272)
.||||++|++. .+|++.|++++.+++++|+++|||||||||++++||.++++......+ ....+.+.++++ +++
T Consensus 3 ~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~--~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 3 LLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTV--THSWECLAEILVGDLTDG 80 (700)
T ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHH--HHHHHHHHHHHhhcccCC
Confidence 68999999994 589999999999999999999999999999999999987654333322 334455666664 579
Q ss_pred cEEEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCC-------------------------c
Q psy17819 89 IFLVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNS-------------------------F 135 (272)
Q Consensus 89 ~~iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~-------------------------~ 135 (272)
+.+++| +++..++++||++++ .+.|.++|++..|.|+++|+||+. .
T Consensus 81 i~vvvG-~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~ 159 (700)
T PLN02339 81 ILCDIG-MPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGD 159 (700)
T ss_pred eEEEEe-eeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCc
Confidence 999999 777777889999988 446788888888999999999862 1
Q ss_pred eEEeeCCceEEEEeecCCCChHHHHH-HHHcCCcEEEeccccCCCCCc--hhHHHHHHHHhhhCceEEEEEcCCcCCCCC
Q psy17819 136 SMFNNGICNIGLGICYDMRFPELAQV-YRKKGCDLLIYPGAFNMTTGP--LHWELLVRSRANDNQVYVAACSPAQDKNSD 212 (272)
Q Consensus 136 ~v~~~~~~~igv~IC~D~~~pe~~~~-~~~~ga~lil~p~~~~~~~~~--~~~~~~~~~ra~en~~~vv~~n~~g~~~~~ 212 (272)
.+|+++++++|+.||+|+|+|+..+. ++.+||++|++|+++++..++ .++..+....+..++.| ++||.+|.+.+.
T Consensus 160 ~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vyaN~~Ge~~~~ 238 (700)
T PLN02339 160 GYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYANQRGCDGGR 238 (700)
T ss_pred ceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEEcCCccCCCc
Confidence 23456678999999999999999985 999999999999987654432 23344444555556777 689999866667
Q ss_pred ccceeeeEEECCCCceeeeCCC----CceEEEEEechhHHHHhhhcCCCCCC
Q psy17819 213 YIAWGHSTVVDPWANILATSQF----EETIVYADIDLNTLNKVRDQIPTGKQ 260 (272)
Q Consensus 213 ~~~~G~S~i~~p~G~~~~~~~~----~~~~~~~~id~~~~~~~r~~~~~~~~ 260 (272)
.+|.|+|.|. |+|+++++.+. ++.+++++||++.++..|...+.+.+
T Consensus 239 lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~ 289 (700)
T PLN02339 239 LYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFRE 289 (700)
T ss_pred eEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhh
Confidence 8899999996 89999999863 45799999999999999987776654
No 38
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=2.2e-37 Score=264.13 Aligned_cols=213 Identities=25% Similarity=0.303 Sum_probs=176.8
Q ss_pred cEEEEEeeccC-C------CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH
Q psy17819 14 FKIALVQMTVG-K------DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 14 iria~~Q~~~~-~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
+||+++|+++. . +.++|++++.+++++|+++++|+|||||++++||.. .. .+.++.++++|++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~---------~~-~~~~~~l~~~ak~ 70 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ---------RD-PDALARLARAARA 70 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc---------cC-HHHHHHHHHHHHh
Confidence 58999999953 3 789999999999999999999999999999998751 22 6788999999999
Q ss_pred cCcEEEEeeeeeccC--CeeEEEEEE---------EcccCCCCCCcc---------------ccccccccCCCCceEEee
Q psy17819 87 KEIFLVGGSIPELDN--DKVYNAATV---------HLFDIAIPGGIT---------------FKESDVLSPGNSFSMFNN 140 (272)
Q Consensus 87 ~~~~iv~Gs~~~~~~--~~~yns~~v---------~~~~~~~p~~~~---------------~~e~~~~~~G~~~~v~~~ 140 (272)
+++++++| +.++++ +++||++++ .+.|.+++.... ..|..+|.+|++..+|++
T Consensus 71 ~~i~ii~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~vf~~ 149 (270)
T cd07571 71 VGAPLLTG-APRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQPLLL 149 (270)
T ss_pred cCCeEEEe-eeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCCcccc
Confidence 99999999 555544 489999988 111221111100 136678999999999999
Q ss_pred CC-ceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCC---CCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccce
Q psy17819 141 GI-CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM---TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAW 216 (272)
Q Consensus 141 ~~-~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~---~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~ 216 (272)
++ +|+|++||||.+|||..+.++++||+++++|+++.+ .....+|..++++||+||++++++||+.
T Consensus 150 ~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~---------- 219 (270)
T cd07571 150 GGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT---------- 219 (270)
T ss_pred CCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC----------
Confidence 99 999999999999999999999999999999997432 2234567788999999999999999976
Q ss_pred eeeEEECCCCceeeeCC-CCceEEEEEechhH
Q psy17819 217 GHSTVVDPWANILATSQ-FEETIVYADIDLNT 247 (272)
Q Consensus 217 G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~ 247 (272)
|.|.|+||+|+++++.+ ++++++++++|++.
T Consensus 220 G~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 220 GISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred eeeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 77999999999999987 47899999999764
No 39
>KOG0805|consensus
Probab=100.00 E-value=1.1e-33 Score=225.57 Aligned_cols=250 Identities=25% Similarity=0.432 Sum_probs=208.6
Q ss_pred ccEEEEEeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc----------------chhhh---hhhhcC
Q psy17819 13 SFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT----------------KYFRE---YSEEIG 72 (272)
Q Consensus 13 ~iria~~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~----------------~~~~~---~~~~~~ 72 (272)
+.||+++|.. ...|....++++++.+.+|+++|+.||||||.++.||+. +.+.+ -+.+++
T Consensus 17 ~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIev~ 96 (337)
T KOG0805|consen 17 IVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIEVP 96 (337)
T ss_pred ceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhcCC
Confidence 6899999998 678999999999999999999999999999999999864 12322 245677
Q ss_pred CChHHHHHHHHHHHcCcEEEEeeeeeccCCeeEEEEEEEcccCC--CCC---C--cccccccccc--CCCCceEEeeCCc
Q psy17819 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIA--IPG---G--ITFKESDVLS--PGNSFSMFNNGIC 143 (272)
Q Consensus 73 ~~~~~~~l~~~a~~~~~~iv~Gs~~~~~~~~~yns~~v~~~~~~--~p~---~--~~~~e~~~~~--~G~~~~v~~~~~~ 143 (272)
++..+.|..+|+++++++|.| ..|+++-.+|.+.+. ++.. .-+ + +.--|.-.|- .|++.+||+++-+
T Consensus 97 -gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f--~~p~g~~lGKHRKlmPTalERciWGqGDGSTiPV~dT~iG 172 (337)
T KOG0805|consen 97 -GPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLF--FSPQGQFLGKHRKLMPTALERCIWGQGDGSTIPVYDTPIG 172 (337)
T ss_pred -ChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEE--ECCCccccccccccccchhhheeeccCCCcccceeecccc
Confidence 899999999999999999999 679999999999988 3211 011 1 1123443344 4557999999999
Q ss_pred eEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC---------------
Q psy17819 144 NIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQD--------------- 208 (272)
Q Consensus 144 ~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~--------------- 208 (272)
|||.+||+|.+.|-+...+..+|+++.+.|+.. ....|...++..|.|-+|||++++.-=.
T Consensus 173 KIG~AICWEN~MPl~R~alY~KgieIycAPT~D----~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~ 248 (337)
T KOG0805|consen 173 KIGAAICWENRMPLYRTALYAKGIEIYCAPTAD----GRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDW 248 (337)
T ss_pred hhceeeecccccHHHHHHHHhcCcEEEeccCCC----CcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccc
Confidence 999999999999999989999999999999985 3477999999999999999999873211
Q ss_pred ----CCCCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCC-CCCCcccchhhhhh
Q psy17819 209 ----KNSDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIP-TGKQKRYDLYDVTA 270 (272)
Q Consensus 209 ----~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~-~~~~~~~~~y~~~~ 270 (272)
..+..+..|+|.|++|-|.+++... ..|+++++|+|+++|.++|..++ ++.|+|||.|.+..
T Consensus 249 ~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtV 316 (337)
T KOG0805|consen 249 YDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTV 316 (337)
T ss_pred hhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEe
Confidence 0245778999999999999999886 58999999999999999999995 67999999998753
No 40
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=3.2e-33 Score=240.35 Aligned_cols=207 Identities=24% Similarity=0.271 Sum_probs=154.2
Q ss_pred EEEEEeec-cCCCHHHHHHHHHHHHHHHHH----CCCcEEEeCCCCCCCCCcchh---hhhhhhcCCChHHHHHHHHHHH
Q psy17819 15 KIALVQMT-VGKDKNKNLENAVRFIRKAAD----NGASLIVLPECFNCPYGTKYF---REYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 15 ria~~Q~~-~~~~~~~n~~~~~~~i~~A~~----~~~dlvvfPE~~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
|||++|++ ..++++.|++++.+++++|++ +++|||||||++++||..... ..+++....++..+.++++|++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~ 80 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKK 80 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 69999999 458999999999999999988 899999999999999986432 2333333227788999999999
Q ss_pred cCcEEEEeeeeeccC---CeeEEEEEE---------EcccCCCCCC-c--ccccc-cccc------CCCCceE--EeeCC
Q psy17819 87 KEIFLVGGSIPELDN---DKVYNAATV---------HLFDIAIPGG-I--TFKES-DVLS------PGNSFSM--FNNGI 142 (272)
Q Consensus 87 ~~~~iv~Gs~~~~~~---~~~yns~~v---------~~~~~~~p~~-~--~~~e~-~~~~------~G~~~~v--~~~~~ 142 (272)
++++|++| ++++.+ +++||++++ ++.|.++... . .+.|. ..+. +|+.... +...+
T Consensus 81 ~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 81 FNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred cCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 99999999 666643 489999988 2233333211 0 01122 1222 7765432 33348
Q ss_pred ceEEEEeecCCC---C--h----HHHHHHHHcCCcEEEeccccCCCCCc--------hhH---HHHHHHHh------hhC
Q psy17819 143 CNIGLGICYDMR---F--P----ELAQVYRKKGCDLLIYPGAFNMTTGP--------LHW---ELLVRSRA------NDN 196 (272)
Q Consensus 143 ~~igv~IC~D~~---~--p----e~~~~~~~~ga~lil~p~~~~~~~~~--------~~~---~~~~~~ra------~en 196 (272)
+|+|+.||||++ | | |+.|.++++|||+|++|++|+...+. .+| ....++|| .||
T Consensus 160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN 239 (295)
T cd07566 160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLE 239 (295)
T ss_pred ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCC
Confidence 899999999995 7 5 99999999999999999998764321 122 23344555 499
Q ss_pred ceEEEEEcCCcCCCCCccceeeeEEEC
Q psy17819 197 QVYVAACSPAQDKNSDYIAWGHSTVVD 223 (272)
Q Consensus 197 ~~~vv~~n~~g~~~~~~~~~G~S~i~~ 223 (272)
++||+.||.+|. +++..|.|+|.|+.
T Consensus 240 ~~~vv~~Nr~G~-~~~~~f~G~S~i~~ 265 (295)
T cd07566 240 GTQVVFCNRIGT-ENDTLYAGSSAVIG 265 (295)
T ss_pred ceEEEEEeccCc-cCCceecCccceee
Confidence 999999999997 46788999999984
No 41
>KOG0808|consensus
Probab=99.97 E-value=1.3e-30 Score=209.77 Aligned_cols=258 Identities=23% Similarity=0.363 Sum_probs=222.1
Q ss_pred ccccEEEEEeecc--C--C----CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc-----chhhhhhhhcCCChHH
Q psy17819 11 AKSFKIALVQMTV--G--K----DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT-----KYFREYSEEIGSGITS 77 (272)
Q Consensus 11 ~~~iria~~Q~~~--~--~----~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~-----~~~~~~~~~~~~~~~~ 77 (272)
++-+|||++|-.+ + . ......+++..+++.|+-.|+++|+|.|.+..+|.. -.+.++++.+..++..
T Consensus 71 pr~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt 150 (387)
T KOG0808|consen 71 PRVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTT 150 (387)
T ss_pred CcEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchH
Confidence 4469999999864 2 2 234566777888888999999999999999988753 2467888888889999
Q ss_pred HHHHHHHHHcCcEEEEeeeeecc---CCeeEEEEEE---------EcccCCCCCCccccccccccCCC-CceEEeeCCce
Q psy17819 78 KTLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV---------HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICN 144 (272)
Q Consensus 78 ~~l~~~a~~~~~~iv~Gs~~~~~---~~~~yns~~v---------~~~~~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~ 144 (272)
+.++++|+++++.||.. +.|++ ++.++|++++ ...|.++|.-..|+|..+|..|+ +-++|++..+|
T Consensus 151 ~flqklakkhdmvivsp-ilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgr 229 (387)
T KOG0808|consen 151 KFLQKLAKKHDMVIVSP-ILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGR 229 (387)
T ss_pred HHHHHHHhhCCeEEEeh-hhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecce
Confidence 99999999999998888 87875 5679999999 33566788888999999999998 78999999999
Q ss_pred EEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCC--------------
Q psy17819 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKN-------------- 210 (272)
Q Consensus 145 igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~-------------- 210 (272)
||+-|||--.+|.-+-.+...||++|++|+++-...+..-|-..++..|+.|++++...|++|.+-
T Consensus 230 iavnicygrhhplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgkpah 309 (387)
T KOG0808|consen 230 IAVNICYGRHHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGKPAH 309 (387)
T ss_pred EEEEeeccCCCchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCCccc
Confidence 999999999999999989999999999999976555567788999999999999999999999741
Q ss_pred -CCccceeeeEEECCCCceeeeCC-CCceEEEEEechhHHHHhhhcCCCCCCcccchhhhh
Q psy17819 211 -SDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVT 269 (272)
Q Consensus 211 -~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~y~~~ 269 (272)
+=-.|+|.|.+..||+...-.+. ..++++++++|++.+++.+++|.+....|.|+|...
T Consensus 310 ~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~ 370 (387)
T KOG0808|consen 310 NDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADL 370 (387)
T ss_pred ccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHH
Confidence 11347999999999998877665 589999999999999999999999999999999864
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=8.9e-31 Score=241.67 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=168.0
Q ss_pred cccEEEEEeeccCC-------CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHH
Q psy17819 12 KSFKIALVQMTVGK-------DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVA 84 (272)
Q Consensus 12 ~~iria~~Q~~~~~-------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a 84 (272)
+++||+++|.+++. +.++|++++.++++++ ++++|+|||||.+++++. .+.. .+..+.+.++|
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~--------~~~~-~~~~~~l~~~a 287 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL--------EDLP-QAFLKALDDLA 287 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc--------cccc-HHHHHHHHHHH
Confidence 36999999999643 4678999999998844 578999999999986542 1112 45677899999
Q ss_pred HHcCcEEEEeeeeecc---CC-eeEEEEEE-------------Ec--ccCCCCCCcc--------ccccccccCCC-Cce
Q psy17819 85 KEKEIFLVGGSIPELD---ND-KVYNAATV-------------HL--FDIAIPGGIT--------FKESDVLSPGN-SFS 136 (272)
Q Consensus 85 ~~~~~~iv~Gs~~~~~---~~-~~yns~~v-------------~~--~~~~~p~~~~--------~~e~~~~~~G~-~~~ 136 (272)
+++++.+++|.. +++ ++ +.||++++ |+ |++++|-+.. ..+..+|.||+ +..
T Consensus 288 ~~~~~~il~G~~-~~~~~~~~~~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~~~ 366 (505)
T PRK00302 288 REKGSALITGAP-RAENKQGRYDYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQP 366 (505)
T ss_pred HhCCCEEEEecc-cccCCCCCCceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCCCC
Confidence 999999999944 443 23 69999988 11 1222221100 01113689998 788
Q ss_pred EEeeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCC---CCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCc
Q psy17819 137 MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM---TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDY 213 (272)
Q Consensus 137 v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~---~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~ 213 (272)
+++++++|+|+.||||..|||..+.++++|+|++++|++..+ ..+..|+..+++.||+||+++++++|++
T Consensus 367 v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~------- 439 (505)
T PRK00302 367 PLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNT------- 439 (505)
T ss_pred CcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCc-------
Confidence 999999999999999999999999999999999999998432 2335677889999999999999999986
Q ss_pred cceeeeEEECCCCceeeeCC-CCceEEEEEechh
Q psy17819 214 IAWGHSTVVDPWANILATSQ-FEETIVYADIDLN 246 (272)
Q Consensus 214 ~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~ 246 (272)
|.|.++||+|+++.+.+ ++++++++++++.
T Consensus 440 ---G~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 440 ---GITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred ---eeeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 67999999999999986 6899999999963
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.97 E-value=3.6e-30 Score=230.70 Aligned_cols=196 Identities=25% Similarity=0.306 Sum_probs=155.7
Q ss_pred cccEEEEEeeccCC-------CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHH
Q psy17819 12 KSFKIALVQMTVGK-------DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVA 84 (272)
Q Consensus 12 ~~iria~~Q~~~~~-------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a 84 (272)
+++||+++|++++. +.++|++++.+++++|.+ ++|+|||||.+++++..+ .+ .+..+.++++|
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~--------~~-~~~~~~l~~~a 227 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLEN--------SP-QKLADRLKLLV 227 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhh--------Cc-HHHHHHHHHHH
Confidence 36999999999653 357899999999998877 899999999999875321 12 33678899999
Q ss_pred HHcCcEEEEeeeeecc-CC--eeEEEEEE--------------Ec--ccCCCCCCccc------cc---cccccCCCCce
Q psy17819 85 KEKEIFLVGGSIPELD-ND--KVYNAATV--------------HL--FDIAIPGGITF------KE---SDVLSPGNSFS 136 (272)
Q Consensus 85 ~~~~~~iv~Gs~~~~~-~~--~~yns~~v--------------~~--~~~~~p~~~~~------~e---~~~~~~G~~~~ 136 (272)
+++++.+++|+ .+.+ ++ ++||++++ |+ |++++|-+..+ .+ ...|+||++..
T Consensus 228 ~~~~~~ii~G~-~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~~ 306 (391)
T TIGR00546 228 LSKGIPILIGA-PDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGPQ 306 (391)
T ss_pred HhCCCEEEEec-ccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCCC
Confidence 99999999994 4443 33 79999998 11 12222211000 01 24689999999
Q ss_pred EEeeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCC---CCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCc
Q psy17819 137 MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT---TGPLHWELLVRSRANDNQVYVAACSPAQDKNSDY 213 (272)
Q Consensus 137 v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~---~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~ 213 (272)
+++++++|+|++||||..|||..|.++++|||++++|+++.+. .+..++..+++.||+||+++++++|++
T Consensus 307 ~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~------- 379 (391)
T TIGR00546 307 VLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT------- 379 (391)
T ss_pred CCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC-------
Confidence 9999999999999999999999999999999999999985432 245677899999999999999999987
Q ss_pred cceeeeEEECCCCce
Q psy17819 214 IAWGHSTVVDPWANI 228 (272)
Q Consensus 214 ~~~G~S~i~~p~G~~ 228 (272)
|.|+++||+|++
T Consensus 380 ---G~S~vidp~G~i 391 (391)
T TIGR00546 380 ---GISAVIDPRGRT 391 (391)
T ss_pred ---ceeEEECCCCCC
Confidence 679999999975
No 44
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.96 E-value=4.6e-28 Score=195.63 Aligned_cols=159 Identities=38% Similarity=0.622 Sum_probs=131.7
Q ss_pred EEEEEeec---cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc--------chhhhhhhhcCCChHHHHHHHH
Q psy17819 15 KIALVQMT---VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT--------KYFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 15 ria~~Q~~---~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~--------~~~~~~~~~~~~~~~~~~l~~~ 83 (272)
|||++|++ ...+.++|++++.+++++|+++++|||||||++++||.. ......+..+. ++..+.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence 79999999 568999999999999999999999999999999999922 23344555565 7899999999
Q ss_pred HHHcCcEEEEeeeeeccCCeeEEEEEE---------EcccCCCCCCcccc-ccccccCC-CCceEEee-----CCceEEE
Q psy17819 84 AKEKEIFLVGGSIPELDNDKVYNAATV---------HLFDIAIPGGITFK-ESDVLSPG-NSFSMFNN-----GICNIGL 147 (272)
Q Consensus 84 a~~~~~~iv~Gs~~~~~~~~~yns~~v---------~~~~~~~p~~~~~~-e~~~~~~G-~~~~v~~~-----~~~~igv 147 (272)
|+++++++++| +++.+++++||++++ ++.|.+++....+. |..+|.+| ....++++ +|+|+|+
T Consensus 80 a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~ 158 (186)
T PF00795_consen 80 AKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGV 158 (186)
T ss_dssp HHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEE
T ss_pred HHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEE
Confidence 99999999999 788899999999988 23444443333455 77788887 45666655 4799999
Q ss_pred EeecCCCChHHHHHHHHcCCcEEEeccc
Q psy17819 148 GICYDMRFPELAQVYRKKGCDLLIYPGA 175 (272)
Q Consensus 148 ~IC~D~~~pe~~~~~~~~ga~lil~p~~ 175 (272)
+||||.+||++.+.++++||+++++|++
T Consensus 159 ~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 159 LICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred EEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999999999999999985
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.95 E-value=7.6e-27 Score=209.39 Aligned_cols=186 Identities=22% Similarity=0.272 Sum_probs=145.9
Q ss_pred cEEEEEeeccCCCH-------HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH
Q psy17819 14 FKIALVQMTVGKDK-------NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 14 iria~~Q~~~~~~~-------~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
.+|+++|++++.+. +++++++.+++++|.+.++|+|||||.+++.+..+ . ....+.+++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~---------~-~~~~~~l~~~~-- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN---------S-PILLDKLKELS-- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh---------C-HHHHHHHHHhc--
Confidence 49999999976443 67899999999999888999999999997643211 1 23456666664
Q ss_pred cCcEEEEeeeeeccCCeeEEEEEE------------Ec--ccCCCCCCc---------cccccccccCCCCceEEeeCCc
Q psy17819 87 KEIFLVGGSIPELDNDKVYNAATV------------HL--FDIAIPGGI---------TFKESDVLSPGNSFSMFNNGIC 143 (272)
Q Consensus 87 ~~~~iv~Gs~~~~~~~~~yns~~v------------~~--~~~~~p~~~---------~~~e~~~~~~G~~~~v~~~~~~ 143 (272)
.++.+++| ..+.+++++|||+++ |+ |++++|-.. .+.|..+|+||++..++++++.
T Consensus 263 ~~~~ii~G-~~~~~~~~~yNS~~vi~~G~~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~~~~~g~ 341 (418)
T PRK12291 263 HKITIITG-ALRVEDGHIYNSTYIFSKGNVQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSDFTLDGV 341 (418)
T ss_pred cCCcEEEe-eeeccCCceEEEEEEECCCCcceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcceeeCCe
Confidence 47899999 556666789999988 22 333344110 2345668999999999999999
Q ss_pred eEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCC---CCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeE
Q psy17819 144 NIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT---TGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220 (272)
Q Consensus 144 ~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~---~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~ 220 (272)
|+|+.||||..|||..+ +|+|++++++|+.+. .++.+|...++.||+||++++++++++ |.|+
T Consensus 342 ~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNt----------GiSa 407 (418)
T PRK12291 342 KFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANG----------SPSY 407 (418)
T ss_pred EEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCC----------ceeE
Confidence 99999999999999987 799999999985543 234677888999999999999999997 6799
Q ss_pred EECCCC
Q psy17819 221 VVDPWA 226 (272)
Q Consensus 221 i~~p~G 226 (272)
++||+-
T Consensus 408 vIdp~~ 413 (418)
T PRK12291 408 IITPKL 413 (418)
T ss_pred EECcch
Confidence 999874
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.5e-24 Score=195.05 Aligned_cols=213 Identities=23% Similarity=0.215 Sum_probs=159.7
Q ss_pred ccEEEEEeeccCCCHH----H---HHHHHHHHHHHHH--HCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHH
Q psy17819 13 SFKIALVQMTVGKDKN----K---NLENAVRFIRKAA--DNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 13 ~iria~~Q~~~~~~~~----~---n~~~~~~~i~~A~--~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (272)
+++|+++|.+++.+.+ . +...+.+....+. ..++|+||+||.+++-. ..+. ......+.+.
T Consensus 227 ~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~--------~~~~--~~~~~~~~~~ 296 (518)
T COG0815 227 TLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFD--------LTRH--PDALARLAEA 296 (518)
T ss_pred ceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccc--------hhhc--chHHHHHHHH
Confidence 5999999999874432 2 2222222333333 37899999999997611 1112 2235677888
Q ss_pred HHHcCcEEEEeeeeec--cCC--eeEEEEEE--------------E--cccCCCCCCccc--------cccccccCCCCc
Q psy17819 84 AKEKEIFLVGGSIPEL--DND--KVYNAATV--------------H--LFDIAIPGGITF--------KESDVLSPGNSF 135 (272)
Q Consensus 84 a~~~~~~iv~Gs~~~~--~~~--~~yns~~v--------------~--~~~~~~p~~~~~--------~e~~~~~~G~~~ 135 (272)
+++.+..+++| ..+. .+| ++|||+++ | .|++++|-+..+ .....|.+|+..
T Consensus 297 ~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~G~~~ 375 (518)
T COG0815 297 LQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSRGPGP 375 (518)
T ss_pred HHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccCCCCC
Confidence 88888999999 4332 233 48999998 2 366666643111 124568889998
Q ss_pred eEEeeC-CceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCC---CCchhHHHHHHHHhhhCceEEEEEcCCcCCCC
Q psy17819 136 SMFNNG-ICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT---TGPLHWELLVRSRANDNQVYVAACSPAQDKNS 211 (272)
Q Consensus 136 ~v~~~~-~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~---~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~ 211 (272)
.++.+. +.|+++.||||.-||+..|...++|+|+++++||..+. .++.|+..+++.||+|+++++++++++
T Consensus 376 ~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNt----- 450 (518)
T COG0815 376 QVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNT----- 450 (518)
T ss_pred cceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCC-----
Confidence 888877 46699999999999999999999999999999985543 456777888899999999999999998
Q ss_pred CccceeeeEEECCCCceeeeCC-CCceEEEEEechh
Q psy17819 212 DYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLN 246 (272)
Q Consensus 212 ~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~id~~ 246 (272)
|-|+++||+|++++..+ +..+++.+.+.+.
T Consensus 451 -----GiSavIdp~Gri~~~l~~~~~~~l~~~v~~~ 481 (518)
T COG0815 451 -----GISAVIDPRGRILAQLPYFTRGVLDATVPLK 481 (518)
T ss_pred -----cceEEECCCCCEEeecCCCCcceeeeeeccc
Confidence 56999999999999997 6899999998744
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.84 E-value=7.5e-20 Score=162.12 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=123.9
Q ss_pred cEEEEEeeccCCCH-----HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcC
Q psy17819 14 FKIALVQMTVGKDK-----NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKE 88 (272)
Q Consensus 14 iria~~Q~~~~~~~-----~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 88 (272)
.++-.++++...+. .++..++.+.+++|.+.++|+|||||.++++|.+. . . +.+.+.+++++
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~--------~--~---~~~~~~l~~~~ 252 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPT--------T--E---RLWRESLRGSD 252 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCccccccccc--------c--c---HHHHHHHHhCC
Confidence 46777777754222 23444556667778888999999999999876431 1 1 12355568899
Q ss_pred cEEEEeeeeeccCCeeEEEEEE--------Eccc-------CCCCCCccccccccccCCC-CceEEeeCCceEEEEeecC
Q psy17819 89 IFLVGGSIPELDNDKVYNAATV--------HLFD-------IAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYD 152 (272)
Q Consensus 89 ~~iv~Gs~~~~~~~~~yns~~v--------~~~~-------~~~p~~~~~~e~~~~~~G~-~~~v~~~~~~~igv~IC~D 152 (272)
+.+++|+ .+++++++||++++ .+.| +++|-...+.|..++.+|. +..++++++.|+|++||||
T Consensus 253 i~II~G~-~~~~~~~~yNsa~v~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~lICYE 331 (388)
T PRK13825 253 VTVIAGA-AVVDPGGYDNVLVAISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPLICYE 331 (388)
T ss_pred CeEEEEe-eecCCCCceEEEEEEeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEEEeee
Confidence 9999994 46667789999988 0111 1111111123556677774 4468999999999999999
Q ss_pred CCC--hHHHHHHHHcCCcEEEeccccCCCC---CchhHHHHHHHHhhhCceEEEEEcC
Q psy17819 153 MRF--PELAQVYRKKGCDLLIYPGAFNMTT---GPLHWELLVRSRANDNQVYVAACSP 205 (272)
Q Consensus 153 ~~~--pe~~~~~~~~ga~lil~p~~~~~~~---~~~~~~~~~~~ra~en~~~vv~~n~ 205 (272)
..| |+..+. .+|+|++++|+|..+.. .+.++..+++.||+|++++++++.+
T Consensus 332 ~~F~~pel~~~--~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 332 QLLVWPVLQSM--LHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred ecCcHHHHHhh--ccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 987 665443 68999999999854432 2467889999999999999999876
No 48
>KOG2303|consensus
Probab=99.81 E-value=8e-20 Score=159.42 Aligned_cols=242 Identities=16% Similarity=0.167 Sum_probs=187.2
Q ss_pred cccccEEEEEeeccC-CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHH---
Q psy17819 10 TAKSFKIALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAK--- 85 (272)
Q Consensus 10 m~~~iria~~Q~~~~-~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~--- 85 (272)
|.+.++||.+++|-+ -|++.|.++|.+-+++|++.||.+-+=||+-++||.+++-..-.+.. -+..+.+.++..
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~--~HswE~l~~l~~~~~ 78 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTL--LHSWEMLAELVESPV 78 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHH--HHHHHHHHHHHcCCC
Confidence 667899999999965 69999999999999999999999999999999999997643222212 233344444443
Q ss_pred HcCcEEEEeeeeeccCCeeEEEEEE--------EcccCCCCCCccccccccccCCCCceEE-------------------
Q psy17819 86 EKEIFLVGGSIPELDNDKVYNAATV--------HLFDIAIPGGITFKESDVLSPGNSFSMF------------------- 138 (272)
Q Consensus 86 ~~~~~iv~Gs~~~~~~~~~yns~~v--------~~~~~~~p~~~~~~e~~~~~~G~~~~v~------------------- 138 (272)
-.++.+.+| +|....+..||+.++ ...|+.+.+...+.|.+||+|+....++
T Consensus 79 ~~~il~diG-mPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVP 157 (706)
T KOG2303|consen 79 TQDILCDIG-MPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVP 157 (706)
T ss_pred CCCeeEecC-CchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeec
Confidence 248999999 999999999999887 3457777788888999999998654322
Q ss_pred ------eeCCceEEEEeecCCCChHHHH-HHHHcCCcEEEeccccCCCCCchh-HHHHHHHHhhhCceEEEEEcCCcCCC
Q psy17819 139 ------NNGICNIGLGICYDMRFPELAQ-VYRKKGCDLLIYPGAFNMTTGPLH-WELLVRSRANDNQVYVAACSPAQDKN 210 (272)
Q Consensus 139 ------~~~~~~igv~IC~D~~~pe~~~-~~~~~ga~lil~p~~~~~~~~~~~-~~~~~~~ra~en~~~vv~~n~~g~~~ 210 (272)
.+...-||.-||.|+|.|...+ .++.+|++++.+.+..-+..++.. -.++....+...|-..+++|.-|...
T Consensus 158 fGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG 237 (706)
T KOG2303|consen 158 FGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDG 237 (706)
T ss_pred ccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCC
Confidence 1112248899999999997765 477899999999888544333322 22455555666777778899999877
Q ss_pred CCccceeeeEEECCCCceeeeCC----CCceEEEEEechhHHHHhhhcC
Q psy17819 211 SDYIAWGHSTVVDPWANILATSQ----FEETIVYADIDLNTLNKVRDQI 255 (272)
Q Consensus 211 ~~~~~~G~S~i~~p~G~~~~~~~----~~~~~~~~~id~~~~~~~r~~~ 255 (272)
+-++|+|.|+|+ -+|+++++.. .+-+++++++|+++++..|...
T Consensus 238 ~RlYydGca~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 238 DRLYYDGCAMIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred ceeEecchhhee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 778899999998 9999999985 3567999999999999999655
No 49
>PLN02798 nitrilase
Probab=85.80 E-value=6.8 Score=33.55 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=42.5
Q ss_pred HHHHHHHcCCcEEEeccccCC--CCCc----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCC
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNM--TTGP----------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPW 225 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~--~~~~----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~ 225 (272)
+.+.++.+|+|+++.|-.+.. .... ..+....+..|.+++++++.....-...++-..+-.+.+++|+
T Consensus 34 ~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~ 113 (286)
T PLN02798 34 LAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDS 113 (286)
T ss_pred HHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCC
Confidence 445566789999999976321 1100 1233445667889999887431110001122345667888999
Q ss_pred Cceee
Q psy17819 226 ANILA 230 (272)
Q Consensus 226 G~~~~ 230 (272)
|+++.
T Consensus 114 G~i~~ 118 (286)
T PLN02798 114 GEIRS 118 (286)
T ss_pred CCEEE
Confidence 99764
No 50
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=84.92 E-value=7.5 Score=32.46 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCcEEEeccccCC--CCCc-----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEEC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNM--TTGP-----------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVD 223 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~--~~~~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~ 223 (272)
+..+.++.+|+|+++.|-.+.. .... ..+....+..|.+++++++..... . ..+-.++-...+++
T Consensus 21 ~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~-~~~~~~yNs~~~i~ 98 (255)
T cd07581 21 RLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-P-AGDGRVYNTLVVVG 98 (255)
T ss_pred HHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-e-CCCCcEEEeEEEEC
Confidence 4556677889999999865322 1111 123445566788999988864321 1 11113456677889
Q ss_pred CCCceee
Q psy17819 224 PWANILA 230 (272)
Q Consensus 224 p~G~~~~ 230 (272)
++|+++.
T Consensus 99 ~~G~i~~ 105 (255)
T cd07581 99 PDGEIIA 105 (255)
T ss_pred CCCcEEE
Confidence 9998664
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=84.61 E-value=8.6 Score=32.03 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCcEEEeccccCCC--CC----------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMT--TG----------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDP 224 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~--~~----------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p 224 (272)
++.+.++.+|+|+++.|-.+... .. ...+....+..|.+++++++.....- .+ -..+-...+++|
T Consensus 23 ~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~--~~-~~~yNs~~~i~~ 99 (254)
T cd07576 23 EAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPER--AG-GAVYNAAVLIDE 99 (254)
T ss_pred HHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEecccc--CC-CceEEEEEEECC
Confidence 45566778899999999754321 10 11233445566888998887653211 11 224456778899
Q ss_pred CCcee
Q psy17819 225 WANIL 229 (272)
Q Consensus 225 ~G~~~ 229 (272)
+|+++
T Consensus 100 ~G~i~ 104 (254)
T cd07576 100 DGTVL 104 (254)
T ss_pred CCCEe
Confidence 99865
No 52
>PLN02747 N-carbamolyputrescine amidase
Probab=84.36 E-value=6.5 Score=33.83 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCcEEEeccccCCC--CC---c-----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMT--TG---P-----------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~--~~---~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~ 220 (272)
++.+.++.+|||+++.|-.+... .. . ..........|.+++++++.... . ..+...+-...
T Consensus 29 ~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~--~~~~~~yNs~~ 105 (296)
T PLN02747 29 RLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFF-E--EANNAHYNSIA 105 (296)
T ss_pred HHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeeee-e--cCCCceEEEEE
Confidence 45666778899999998763221 10 0 01223455678889988875321 1 11222445667
Q ss_pred EECCCCcee
Q psy17819 221 VVDPWANIL 229 (272)
Q Consensus 221 i~~p~G~~~ 229 (272)
+++|+|+++
T Consensus 106 ~i~~~G~i~ 114 (296)
T PLN02747 106 IIDADGTDL 114 (296)
T ss_pred EECCCCCCc
Confidence 789999876
No 53
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=84.19 E-value=6.6 Score=33.53 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=41.5
Q ss_pred HHHHHHHcCCcEEEeccccC--CCCC--c------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEE
Q psy17819 158 LAQVYRKKGCDLLIYPGAFN--MTTG--P------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTV 221 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~--~~~~--~------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i 221 (272)
+.+.++.+|||+++.|-.+. +... . ..+....+..|.+++++++.. .. ....+-.++-.+.+
T Consensus 35 ~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~-~~~~~~~~yNs~~~ 112 (287)
T cd07568 35 MIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IY-EKEQGGTLYNTAAV 112 (287)
T ss_pred HHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eE-EEcCCCcEEEEEEE
Confidence 45556678999999987532 2100 0 012334566789999998862 11 11111234556778
Q ss_pred ECCCCcee
Q psy17819 222 VDPWANIL 229 (272)
Q Consensus 222 ~~p~G~~~ 229 (272)
++|+|+++
T Consensus 113 i~~~G~i~ 120 (287)
T cd07568 113 IDADGTYL 120 (287)
T ss_pred ECCCCcEe
Confidence 89999876
No 54
>PLN00202 beta-ureidopropionase
Probab=83.47 E-value=8.1 Score=35.10 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCCc----hhH-----------HHHHHHHhhhCceEEEEEcCCcCCC--CCccceeee
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTGP----LHW-----------ELLVRSRANDNQVYVAACSPAQDKN--SDYIAWGHS 219 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~~----~~~-----------~~~~~~ra~en~~~vv~~n~~g~~~--~~~~~~G~S 219 (272)
++.+.++.+|||+|+.|-.|..+... ..| ....+..|.+++++++.. . .+.. .+-.++-.+
T Consensus 117 ~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G-~-~e~~~~~~~~~yNSa 194 (405)
T PLN00202 117 PMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP-I-LERDVNHGETLWNTA 194 (405)
T ss_pred HHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE-e-eeeecCCCCcEEEEE
Confidence 34455677899999999764321100 112 345566789999998853 2 2211 122356677
Q ss_pred EEECCCCceeee
Q psy17819 220 TVVDPWANILAT 231 (272)
Q Consensus 220 ~i~~p~G~~~~~ 231 (272)
.+++++|+++..
T Consensus 195 ~vI~~~G~iig~ 206 (405)
T PLN00202 195 VVIGNNGNIIGK 206 (405)
T ss_pred EEECCCCcEEEE
Confidence 888999987643
No 55
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=82.64 E-value=11 Score=31.51 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCC-------------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEEC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTG-------------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVD 223 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~-------------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~ 223 (272)
++...++++|+|+++.|-.+..... ........+..|.+++++++..........+-.++-...+++
T Consensus 22 ~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~yNs~~~i~ 101 (265)
T cd07572 22 ELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFD 101 (265)
T ss_pred HHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEEEEEEEEC
Confidence 3455667789999999976432111 012334456678889988875432111110123456678889
Q ss_pred CCCceee
Q psy17819 224 PWANILA 230 (272)
Q Consensus 224 p~G~~~~ 230 (272)
|+|+++.
T Consensus 102 ~~G~i~~ 108 (265)
T cd07572 102 PDGELVA 108 (265)
T ss_pred CCCeEEe
Confidence 9998753
No 56
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=82.51 E-value=9.7 Score=32.24 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCcEEEeccccC--CCCCc--------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFN--MTTGP--------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~--~~~~~--------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~ 220 (272)
++.+.++++|||+++.|-.+. +.... ..+....+..|.+++++++... ....++ .++-...
T Consensus 23 ~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~--~~~~~~-~~yNs~~ 99 (279)
T TIGR03381 23 RLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSF--FEKAGN-AYYNSLA 99 (279)
T ss_pred HHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEee--eecCCC-ceEEeEE
Confidence 455566778999999996532 21100 1223445567889998887532 121222 3445677
Q ss_pred EECCCCcee
Q psy17819 221 VVDPWANIL 229 (272)
Q Consensus 221 i~~p~G~~~ 229 (272)
+++|+|+++
T Consensus 100 ~i~~~G~i~ 108 (279)
T TIGR03381 100 MIDADGSVL 108 (279)
T ss_pred EECCCCCEE
Confidence 889999876
No 57
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=82.15 E-value=10 Score=32.68 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCC-----------chh--------------HHHHHHHHhhhCceEEEEEcCCcCCCC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTG-----------PLH--------------WELLVRSRANDNQVYVAACSPAQDKNS 211 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~-----------~~~--------------~~~~~~~ra~en~~~vv~~n~~g~~~~ 211 (272)
++.+.++.+|+++|+.|-.+..... ... ....++..|.+++++++..... . ..
T Consensus 24 ~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~-~~ 101 (297)
T cd07564 24 RLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-R-DG 101 (297)
T ss_pred HHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-c-cC
Confidence 4556677889999999975432100 011 1123345678889988855321 1 12
Q ss_pred CccceeeeEEECCCCceeee
Q psy17819 212 DYIAWGHSTVVDPWANILAT 231 (272)
Q Consensus 212 ~~~~~G~S~i~~p~G~~~~~ 231 (272)
+ .++-.+.+++|+|+++..
T Consensus 102 ~-~~yNs~~vi~~~G~i~~~ 120 (297)
T cd07564 102 G-TLYNTQLLIDPDGELLGK 120 (297)
T ss_pred C-ceEEEEEEEcCCCCEeee
Confidence 2 345667788999997744
No 58
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.72 E-value=14 Score=30.96 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHcCCcEEEeccccCCCCCc---------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEE
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNMTTGP---------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVV 222 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~~~~~---------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~ 222 (272)
+.+.++.+|+|+++.|-.+...... .......+..|.+++++++.-...-. ...-.+.-...++
T Consensus 24 ~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~-~~~~~~~Ns~~~i 102 (258)
T cd07584 24 LCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKG-GVPGKVYNSAVVI 102 (258)
T ss_pred HHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehccc-CCCCceEEEEEEE
Confidence 3445667899999998653221110 12234456678889988876542111 1112345667788
Q ss_pred CCCCcee
Q psy17819 223 DPWANIL 229 (272)
Q Consensus 223 ~p~G~~~ 229 (272)
+|+|+++
T Consensus 103 ~~~G~i~ 109 (258)
T cd07584 103 DPEGESL 109 (258)
T ss_pred CCCCCEE
Confidence 9999875
No 59
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=78.94 E-value=14 Score=30.79 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCC-----------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTG-----------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPW 225 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~-----------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~ 225 (272)
++...++++|+|+++.|-.+..... ...+....+..|.+++++++.-... . ..+..++-...+++|+
T Consensus 23 ~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~-~-~~~~~~yNs~~~i~~~ 100 (253)
T cd07583 23 SLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVA-E-KEGGKLYNTAYVIDPD 100 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEE-e-cCCCcEEEEEEEECCC
Confidence 3455567789999999975322110 1123445566788888888843211 1 1112345667788999
Q ss_pred Cceee
Q psy17819 226 ANILA 230 (272)
Q Consensus 226 G~~~~ 230 (272)
|+++.
T Consensus 101 G~i~~ 105 (253)
T cd07583 101 GELIA 105 (253)
T ss_pred CcEEE
Confidence 98764
No 60
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=77.90 E-value=16 Score=32.69 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCC---c--------------hhHHHHHHHHhhhCceEEEEEcCCcCCCC--Ccccee
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTG---P--------------LHWELLVRSRANDNQVYVAACSPAQDKNS--DYIAWG 217 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~---~--------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~--~~~~~G 217 (272)
++.+.++.+||++|+.|-.|..... . ..+....+..|.+++++++.. .. +... +-.++-
T Consensus 94 ~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~g-i~-e~~~~~~~~~yN 171 (363)
T cd07587 94 KIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP-IL-ERDEEHGDTIWN 171 (363)
T ss_pred HHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEe-ee-eeecCCCCcEEE
Confidence 3455567789999998875432110 0 012234567789999998742 11 1111 224556
Q ss_pred eeEEECCCCceee
Q psy17819 218 HSTVVDPWANILA 230 (272)
Q Consensus 218 ~S~i~~p~G~~~~ 230 (272)
.+.+++|+|+++.
T Consensus 172 ta~vi~~~G~ilg 184 (363)
T cd07587 172 TAVVISNSGNVLG 184 (363)
T ss_pred EEEEECCCCCEEe
Confidence 7888899999874
No 61
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=77.82 E-value=17 Score=29.95 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCC--------------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTG--------------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVV 222 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~--------------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~ 222 (272)
...+.+.++|+|+++.|-.+..... ...+....+..|.+++++++.-.. ...++ .+.-...++
T Consensus 22 ~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~--~~~~~-~~~N~~~~i 98 (253)
T cd07197 22 RLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIA--EKDGD-KLYNTAVVI 98 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeE--EccCC-ceEEEEEEE
Confidence 3455667789999999975322110 123445566778888888875432 11122 345667788
Q ss_pred CCCCcee
Q psy17819 223 DPWANIL 229 (272)
Q Consensus 223 ~p~G~~~ 229 (272)
+|+|+++
T Consensus 99 ~~~G~i~ 105 (253)
T cd07197 99 DPDGEII 105 (253)
T ss_pred CCCCeEE
Confidence 9999865
No 62
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=77.34 E-value=9.2 Score=30.04 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHHHHHHcCCcEEEeccccCCCC--------Cc-----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceee
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNMTT--------GP-----------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGH 218 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~~~--------~~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~ 218 (272)
+.+.++++|+|+++.|-.+.... .. ..+.......|.+++++++.....- ++-.+.-.
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~---~~~~~~N~ 102 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER---DDGGLYNS 102 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE---ETTEEEEE
T ss_pred HHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc---ccccccce
Confidence 34556777999999997644321 00 1233455667889998888653221 11225566
Q ss_pred eEEECCCCcee
Q psy17819 219 STVVDPWANIL 229 (272)
Q Consensus 219 S~i~~p~G~~~ 229 (272)
..+++|+|+++
T Consensus 103 ~~~~~~~g~~~ 113 (186)
T PF00795_consen 103 AVVIDPDGEIL 113 (186)
T ss_dssp EEEEETTSEEE
T ss_pred eEEEEeeeccc
Confidence 77788999887
No 63
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=77.27 E-value=20 Score=30.79 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=38.6
Q ss_pred cCCcEEEeccccCC--CCC--ch-------------hHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCc
Q psy17819 165 KGCDLLIYPGAFNM--TTG--PL-------------HWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWAN 227 (272)
Q Consensus 165 ~ga~lil~p~~~~~--~~~--~~-------------~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (272)
+|||+|+.|-.+.. ... .. ......+..|.+++++++.....-.....-.++-.+.+++|+|+
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~ 120 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGE 120 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCc
Confidence 47999998865321 111 00 12245566788999988854321100111234566788899999
Q ss_pred eeee
Q psy17819 228 ILAT 231 (272)
Q Consensus 228 ~~~~ 231 (272)
++..
T Consensus 121 i~~~ 124 (294)
T cd07582 121 IILR 124 (294)
T ss_pred EEEE
Confidence 7754
No 64
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=77.18 E-value=9.1 Score=32.15 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 26 DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 26 ~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+.....+.+.+..+...+++..+++|||..-+.. ..+ .++..-...+|.+.++.|+-=
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~---------g~l--~~Fk~Ga~~lA~~~~~PIvPv 177 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRG---------RGL--LPFKTGAFHAAIAAGVPIIPV 177 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCC---------CCC--CCccHHHHHHHHHcCCCEEEE
Confidence 4455556666666666677889999999975411 112 456777888899998886554
No 65
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=75.33 E-value=23 Score=30.07 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCcEEEeccccC--CCCCc--------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFN--MTTGP--------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~--~~~~~--------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~ 220 (272)
+..+.++.+|+|+++.|-.+. +.... ..+.......|.+++++++... ... ..+-.++-...
T Consensus 23 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~-~~~-~~~~~~yNs~~ 100 (284)
T cd07573 23 ELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSL-FEK-RGNGLYYNSAV 100 (284)
T ss_pred HHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecc-eee-CCCCcEEEEEE
Confidence 455667778999999997522 11110 1122445667888998887632 111 11123456677
Q ss_pred EECCCCceee
Q psy17819 221 VVDPWANILA 230 (272)
Q Consensus 221 i~~p~G~~~~ 230 (272)
+++|+|+++.
T Consensus 101 v~~~~G~i~~ 110 (284)
T cd07573 101 VIDADGSLLG 110 (284)
T ss_pred EECCCCCEEe
Confidence 8899998763
No 66
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=75.29 E-value=22 Score=30.71 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=38.4
Q ss_pred cCCcEEEeccccCC--CCC-ch------------hHHHHHHHHhhhCceEEEEEcCCcCCCCC-ccceeeeEEECCCCce
Q psy17819 165 KGCDLLIYPGAFNM--TTG-PL------------HWELLVRSRANDNQVYVAACSPAQDKNSD-YIAWGHSTVVDPWANI 228 (272)
Q Consensus 165 ~ga~lil~p~~~~~--~~~-~~------------~~~~~~~~ra~en~~~vv~~n~~g~~~~~-~~~~G~S~i~~p~G~~ 228 (272)
+|+++|+.|-.+.. ... .. ......+..|.+++++++.... -...++ ..++-.+.+++|+|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~-e~~~~~~~~~yNta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYP-EKVDESSPKLYNSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeee-EecCCCCCceEEEEEEEcCCCeE
Confidence 79999999975432 111 00 0112334568889988875421 111110 2356778899999987
Q ss_pred eee
Q psy17819 229 LAT 231 (272)
Q Consensus 229 ~~~ 231 (272)
++.
T Consensus 114 i~~ 116 (295)
T cd07566 114 VFN 116 (295)
T ss_pred EEE
Confidence 744
No 67
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=73.19 E-value=12 Score=27.24 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
.....+.+.++.++|-.+++|||...... ... .++..-+..+|++.++.|+.
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~~~---------~~~--~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRSRG---------RDI--LPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCC---------CCC--CCcchhHHHHHHHcCCCEEe
Confidence 34445556667788889999999975411 011 23456677788888888764
No 68
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=73.08 E-value=26 Score=30.39 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCcEEEeccccCC--CC-Cc---------------------------hhHHHHHHHHhhhCceEEEEEcCC
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNM--TT-GP---------------------------LHWELLVRSRANDNQVYVAACSPA 206 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~--~~-~~---------------------------~~~~~~~~~ra~en~~~vv~~n~~ 206 (272)
+..+.++++||++|+.|-.+.. .. .. .......+..|.+++++++.. ..
T Consensus 31 ~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~ 109 (299)
T cd07567 31 EIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPDRFDYTEVLQRLSCAARENSIYVVAN-LG 109 (299)
T ss_pred HHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccccccCchHHHHHHHHHHHHhCeEEEec-cc
Confidence 3445567789999999864322 10 00 012344556788999998853 21
Q ss_pred cCC----------CCCccceeeeEEECCCCceeee
Q psy17819 207 QDK----------NSDYIAWGHSTVVDPWANILAT 231 (272)
Q Consensus 207 g~~----------~~~~~~~G~S~i~~p~G~~~~~ 231 (272)
-.. ..+..++-.+.+++|+|+++..
T Consensus 110 e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~ 144 (299)
T cd07567 110 EKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIAR 144 (299)
T ss_pred cccccccccccCCCCCCceeEEEEEEcCCCCccce
Confidence 110 0111345678888999987633
No 69
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=72.29 E-value=11 Score=27.59 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 30 NLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
......+.+.+..+++--+++|||...+-. ... .++..-...+|.+.+++|+
T Consensus 76 ~~~~~~~~~~~~l~~~~~i~ifPEG~~~~~---------~~~--~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 76 KNRKALKDIKEILRKGGSIVIFPEGTRSRS---------GEL--LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHHHHC---EEE-TT-S---B-----------B------HHHHHHHHHH-----
T ss_pred ccchhHHHHHHHhhhcceeeecCCccCcCC---------Ccc--CCccHHHHHHHHHcCCccc
Confidence 344444445556666555999999965411 011 3344556666666666654
No 70
>PLN02504 nitrilase
Probab=71.18 E-value=28 Score=30.82 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeee
Q psy17819 189 VRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT 231 (272)
Q Consensus 189 ~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~ 231 (272)
....|.+++++++..... ..+-.++-.+.+++|+|+++..
T Consensus 110 l~~~A~~~~i~iv~G~~e---~~~~~~yNsa~~i~~~G~i~~~ 149 (346)
T PLN02504 110 LAAMAGKYKVYLVMGVIE---RDGYTLYCTVLFFDPQGQYLGK 149 (346)
T ss_pred HHHHHHHcCCEEEEeeee---cCCCceEEEEEEECCCCCEEeE
Confidence 345678899888764321 1122356677888999997643
No 71
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=69.18 E-value=35 Score=29.32 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=37.3
Q ss_pred cCCcEEEeccccCC--CCCc-----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCC--ccceeeeEEECCCCcee
Q psy17819 165 KGCDLLIYPGAFNM--TTGP-----------LHWELLVRSRANDNQVYVAACSPAQDKNSD--YIAWGHSTVVDPWANIL 229 (272)
Q Consensus 165 ~ga~lil~p~~~~~--~~~~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~--~~~~G~S~i~~p~G~~~ 229 (272)
+|+|+++.|-.+.. .... .......+..|.+++++++.. .... ..+ -.++-.+.+++|+|+++
T Consensus 38 ~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA~~~~i~i~~g-~~e~-~~~~~~~~yNsa~~i~~~G~i~ 115 (291)
T cd07565 38 PGMDLIVFPEYSTQGLMYDKWTMDETACTVPGPETDIFAEACKEAKVWGVFS-IMER-NPDHGKNPYNTAIIIDDQGEIV 115 (291)
T ss_pred CCCeEEEeCCcccccCCCCcchhhhhccCCCChhHHHHHHHHHHCCeEEEEE-eeee-cCCCCCceEEEEEEECCCCcEE
Confidence 49999999965322 1000 112234456688999887752 1111 111 23456678889999876
Q ss_pred ee
Q psy17819 230 AT 231 (272)
Q Consensus 230 ~~ 231 (272)
..
T Consensus 116 ~~ 117 (291)
T cd07565 116 LK 117 (291)
T ss_pred EE
Confidence 44
No 72
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.50 E-value=41 Score=28.70 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHHHcCCcEEEeccccCC--CCC-------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCc
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNM--TTG-------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWAN 227 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~--~~~-------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (272)
+.+.++++|+|+++.|-.+.. ... ........+..|.+++++++.... .. .++ .++-...+++|+|.
T Consensus 23 ~i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~~-~~-~~~-~~yNs~~vi~~~G~ 98 (279)
T cd07579 23 LAAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGFA-EA-DGD-GLYNSAVLVGPEGL 98 (279)
T ss_pred HHHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEece-Ec-cCC-cEEEEEEEEeCCee
Confidence 344556789999999965422 110 012334456778899988885432 11 112 24556778889984
No 73
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.33 E-value=40 Score=28.12 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHHHHHHcCCcEEEeccccCC--CCC--c--------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCC
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNM--TTG--P--------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPW 225 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~--~~~--~--------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~ 225 (272)
+.+.++.+|+|+++.|-.+.. ... . ..........|.+++++++.... ... +-.++-...+++|+
T Consensus 24 ~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~--~~~-~~~~yNs~~vi~~~ 100 (261)
T cd07585 24 WTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGLI--EKA-GDRPYNTYLVCLPD 100 (261)
T ss_pred HHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEecc--ccC-CCceeEEEEEECCC
Confidence 445567789999999864321 111 0 11233455678889988885432 111 22456777888999
Q ss_pred Ccee
Q psy17819 226 ANIL 229 (272)
Q Consensus 226 G~~~ 229 (272)
|.+.
T Consensus 101 g~i~ 104 (261)
T cd07585 101 GLVH 104 (261)
T ss_pred CcEe
Confidence 9754
No 74
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=67.17 E-value=14 Score=26.10 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 29 KNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
...+.+.+.++ +.+.+..+++|||....... .. ..+..-..++|++.+..|+
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~---------~~--~~~~~g~~~la~~~~~~v~ 111 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPG---------KL--LPFKKGAARLALEAGVPIV 111 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCC---------Cc--CCCcccHHHHHHHcCCCEE
Confidence 44555555544 56678999999999854211 01 2345556778888875544
No 75
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=66.12 E-value=28 Score=29.51 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHHcCCcEEEeccccCCC--CCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCcee
Q psy17819 159 AQVYRKKGCDLLIYPGAFNMT--TGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANIL 229 (272)
Q Consensus 159 ~~~~~~~ga~lil~p~~~~~~--~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~ 229 (272)
.+.++.+|+++++.|-.+... ..........+..|.+++++++.....-. .++..+.-...+++|+|+++
T Consensus 32 i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~-~~~~~~~Ns~~~i~~~G~i~ 103 (270)
T cd07571 32 TRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRRE-PGGGRYYNSALLLDPGGGIL 103 (270)
T ss_pred HhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeec-cCCCceEEEEEEECCCCCCc
Confidence 344456689999999764321 11122334555667889998886443211 11123445667789999865
No 76
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=66.01 E-value=42 Score=28.90 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCcEEEeccccCC--CC-----C---chh---------HHHHHHHHhhhCceEEEEEcCCcCCCCC--ccc
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNM--TT-----G---PLH---------WELLVRSRANDNQVYVAACSPAQDKNSD--YIA 215 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~--~~-----~---~~~---------~~~~~~~ra~en~~~vv~~n~~g~~~~~--~~~ 215 (272)
+..+.++.+|||+|+.|-.+.. .. . ... ........|.+++++++.... ....++ ..+
T Consensus 29 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~~~~~~~ 107 (302)
T cd07569 29 ALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYA-ELTEDGGVKRR 107 (302)
T ss_pred HHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEece-eecCCCCccee
Confidence 3456667789999999864321 10 0 011 112234568889998875421 100111 134
Q ss_pred eeeeEEECCCCceee
Q psy17819 216 WGHSTVVDPWANILA 230 (272)
Q Consensus 216 ~G~S~i~~p~G~~~~ 230 (272)
+-...+++|+|+++.
T Consensus 108 yNsa~~i~~~G~i~~ 122 (302)
T cd07569 108 FNTSILVDKSGKIVG 122 (302)
T ss_pred eeEEEEECCCCCEee
Confidence 556778899999763
No 77
>PRK13287 amiF formamidase; Provisional
Probab=64.95 E-value=48 Score=29.22 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=37.0
Q ss_pred cCCcEEEeccccCCCCCch-------------hHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeee
Q psy17819 165 KGCDLLIYPGAFNMTTGPL-------------HWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT 231 (272)
Q Consensus 165 ~ga~lil~p~~~~~~~~~~-------------~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~ 231 (272)
.|+|+++.|-.+......+ .........|.+++++++..- .....++..++-...+++|+|+++..
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~g~~~~~l~~~a~~~~i~~~~g~-~e~~~~~~~~yNsa~vi~~~G~i~~~ 129 (333)
T PRK13287 51 PGLDLIVFPEYSTQGLNTKKWTTEEFLCTVDGPEVDAFAQACKENKVWGVFSI-MERNPDGNEPYNTAIIIDDQGEIILK 129 (333)
T ss_pred CCCcEEEcCCcccccCCccccchhhhcccCCCHHHHHHHHHHHHcCeEEEEee-EEEcCCCCceEEEEEEECCCCcEEEE
Confidence 3899999986533210011 122344556778888887522 11111112144567788999997644
No 78
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.72 E-value=33 Score=29.03 Aligned_cols=63 Identities=22% Similarity=0.112 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 28 NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+..++.+++.++.|..-|++.|++|-... .+.... ....... ...++.+.+.|+++|+.+.+=
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~-~~~~~~~--~~~l~~l~~~a~~~gv~l~lE 152 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYDV-YYEEKS-EETRQRF--IEGLAWAVEQAAAAQVMLAVE 152 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCccc-cccccc-HHHHHHH--HHHHHHHHHHHHHhCCEEEEE
Confidence 45788889999999999999999873211 111110 1111111 345677788888999886653
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.98 E-value=45 Score=28.07 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 27 KNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 27 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+..++.+.+.++.|+.-|++.|+++-.. .++... ..+..... .+.++.+.+.|+++|+.+.+=
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~-~~~~~~~~--~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTP-PNVIWGRL--AENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCC-HHHHHHHH--HHHHHHHHHHHHHcCCEEEEe
Confidence 35678899999999999999998886542 222211 11111222 356788888999999876544
No 80
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=62.39 E-value=28 Score=21.95 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcE
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIF 90 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 90 (272)
+++++.++.-.....+.+-||.+. ......+-++|+.+++.
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~------------------~~~R~~vH~lA~~~~L~ 42 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMD------------------KHGRKTIHKLANCYNLK 42 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCC------------------HHHHHHHHHHHHHcCCc
Confidence 456666666666678999999964 55678888999988765
No 81
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.26 E-value=16 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHcCcEEEEe
Q psy17819 74 GITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~G 94 (272)
......+++.|+++++.++.-
T Consensus 61 H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEE
Confidence 778999999999999987765
No 82
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=61.83 E-value=40 Score=28.11 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=36.1
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEe--ccccCCCCCc--hhHHHHHHHHhhhCceEEEEEc
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIY--PGAFNMTTGP--LHWELLVRSRANDNQVYVAACS 204 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~--p~~~~~~~~~--~~~~~~~~~ra~en~~~vv~~n 204 (272)
+|++|.|. .++..+.+.++|+|+|+. |..|...... ..........+++|++.+.++=
T Consensus 34 ~V~~~ld~-t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~H 95 (241)
T PF01784_consen 34 KVLVALDA-TPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAH 95 (241)
T ss_dssp EEEEESS--SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEES
T ss_pred EEEEEEeC-CHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEec
Confidence 78889886 466788888899999994 7766443221 2223444556778888887653
No 83
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=61.69 E-value=57 Score=27.13 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHcCCcEEEeccccCCC--CCc--------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCc
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNMT--TGP--------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWAN 227 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~~--~~~--------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (272)
..+.+++ |+|+++.|-.+... ... .......+..|.++++.++.. .... . +-.++-.+.+++++|.
T Consensus 25 ~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~-~~~~-~-~~~~yNs~~~i~~~G~ 100 (252)
T cd07575 25 KIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGS-LIIK-E-GGKYYNRLYFVTPDGE 100 (252)
T ss_pred HHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEEE-EEEc-c-CCceEEEEEEECCCCC
Confidence 3444454 99999999753221 110 112334566788998876632 2111 1 2234566778899998
Q ss_pred ee
Q psy17819 228 IL 229 (272)
Q Consensus 228 ~~ 229 (272)
+.
T Consensus 101 i~ 102 (252)
T cd07575 101 VY 102 (252)
T ss_pred EE
Confidence 65
No 84
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=61.33 E-value=65 Score=26.87 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHHcCCcEEEeccccCC--CC-Cc-----------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEEC
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNM--TT-GP-----------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVD 223 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~--~~-~~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~ 223 (272)
..+.++++|+|+|+.|-.+.. .. .. .......+..|.+++++++.....-. ..+-.++-...+++
T Consensus 25 ~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~~-~~~~~~yNs~~vi~ 103 (258)
T cd07578 25 LCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVGLPEVD-SRSGIYYNSAVLIG 103 (258)
T ss_pred HHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEecceec-CCCCCeeEEEEEEC
Confidence 345566789999999975321 11 00 01123345567888988875432111 11112345567788
Q ss_pred CCCc
Q psy17819 224 PWAN 227 (272)
Q Consensus 224 p~G~ 227 (272)
|+|.
T Consensus 104 ~~g~ 107 (258)
T cd07578 104 PSGV 107 (258)
T ss_pred CCCc
Confidence 9884
No 85
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=58.29 E-value=45 Score=26.43 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=43.5
Q ss_pred cEEEEEeecc---C-C------CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHH
Q psy17819 14 FKIALVQMTV---G-K------DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 14 iria~~Q~~~---~-~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (272)
-.+.+++... . . +.++..+.+.++++++.+.++.+|++-=.....+.... .....+ ..+.+.++++
T Consensus 66 pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 141 (198)
T cd01821 66 GDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG--KVEDTL--GDYPAAMREL 141 (198)
T ss_pred CCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC--cccccc--hhHHHHHHHH
Confidence 3566677642 1 1 45667777777888887788888776211111111110 011122 5678999999
Q ss_pred HHHcCcEE
Q psy17819 84 AKEKEIFL 91 (272)
Q Consensus 84 a~~~~~~i 91 (272)
|+++++.+
T Consensus 142 a~~~~~~~ 149 (198)
T cd01821 142 AAEEGVPL 149 (198)
T ss_pred HHHhCCCE
Confidence 99998874
No 86
>KOG0807|consensus
Probab=58.08 E-value=38 Score=28.35 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=47.0
Q ss_pred hHHHHHHHHcCCcEEEeccccCCCCC-ch-----------hHHHHHHHHhhhCceEEEEEcCCcCCCC-CccceeeeEEE
Q psy17819 156 PELAQVYRKKGCDLLIYPGAFNMTTG-PL-----------HWELLVRSRANDNQVYVAACSPAQDKNS-DYIAWGHSTVV 222 (272)
Q Consensus 156 pe~~~~~~~~ga~lil~p~~~~~~~~-~~-----------~~~~~~~~ra~en~~~vv~~n~~g~~~~-~~~~~G~S~i~ 222 (272)
.|+.++++++||++++.|-++++... +. .+-.-.+..|.++++|+--.......++ .....-...++
T Consensus 37 keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwlSlgg~~~r~~~~~~k~~N~hl~i 116 (295)
T KOG0807|consen 37 KELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWLSLGGHHERSDDGNQKLRNTHLLI 116 (295)
T ss_pred HHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeEEeccccCCCccccceeeeeEEEE
Confidence 47788889999999999988766321 11 1122234456788888876554333221 12334567777
Q ss_pred CCCCceeee
Q psy17819 223 DPWANILAT 231 (272)
Q Consensus 223 ~p~G~~~~~ 231 (272)
|..|+++++
T Consensus 117 d~~G~i~a~ 125 (295)
T KOG0807|consen 117 DSKGEIRAE 125 (295)
T ss_pred cCCchHHHH
Confidence 888887644
No 87
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=56.71 E-value=34 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=25.8
Q ss_pred CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 45 GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 45 ~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+-.+++|||..-+. . .++..-...+|.+.++.|+-=
T Consensus 95 ~~~l~IFPEGtR~~-------------~-~~fk~G~~~lA~~~~~PIvPv 130 (163)
T cd07988 95 EFVLAIAPEGTRSK-------------V-DKWKTGFYHIARGAGVPILLV 130 (163)
T ss_pred CcEEEEeCCCCCCC-------------C-cChhhHHHHHHHHcCCCEEEE
Confidence 45799999997552 1 345667788899998886543
No 88
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.29 E-value=50 Score=21.06 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 33 NAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 33 ~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
...++++.|+++|.+.+.+=+.... . ....+.+.++++++.++.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~----------------~-~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNL----------------F-GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcc----------------c-CHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999997632 1 1234556677789999999
No 89
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=55.74 E-value=14 Score=24.85 Aligned_cols=38 Identities=11% Similarity=0.298 Sum_probs=27.7
Q ss_pred ccEEEEEeec--cCCCHHHHHHHHHHHHHHHHHCCCcEEE
Q psy17819 13 SFKIALVQMT--VGKDKNKNLENAVRFIRKAADNGASLIV 50 (272)
Q Consensus 13 ~iria~~Q~~--~~~~~~~n~~~~~~~i~~A~~~~~dlvv 50 (272)
.+|||+.+.+ +.-+.+...+.+.+.+..|.+.+..+|.
T Consensus 2 eIkIGi~~~~REl~ies~~s~dev~~~v~~Al~~~~~~l~ 41 (74)
T PF11305_consen 2 EIKIGIQNVARELVIESDQSADEVEAAVTDALADGSGVLT 41 (74)
T ss_pred eEEEeeecCCceEEEecCCCHHHHHHHHHHHHhCCCceEE
Confidence 3899999987 3445556778888888888887754443
No 90
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=55.05 E-value=1.2e+02 Score=26.95 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=38.0
Q ss_pred cCCcEEEeccccCCC--CCc-----------hhHHHHHHHHhhhCceEEEEEcCCcCC--C-CCccceeeeEEECCCCce
Q psy17819 165 KGCDLLIYPGAFNMT--TGP-----------LHWELLVRSRANDNQVYVAACSPAQDK--N-SDYIAWGHSTVVDPWANI 228 (272)
Q Consensus 165 ~ga~lil~p~~~~~~--~~~-----------~~~~~~~~~ra~en~~~vv~~n~~g~~--~-~~~~~~G~S~i~~p~G~~ 228 (272)
+|+|+|+.|-.+... ... ..........|.+++++++..-. |+. + .+-.++-...+++|+|++
T Consensus 50 ~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g~~~~~l~~~A~~~~i~~v~~i~-ge~~~~~~~~~~yNta~vi~~~G~i 128 (345)
T PRK13286 50 PGMDLVIFPEYSTHGIMYDRQEMYETASTIPGEETAIFAEACRKAKVWGVFSLT-GERHEEHPRKAPYNTLILINDKGEI 128 (345)
T ss_pred CCCcEEEcCCccccCCCcChHHHHHhcccCCCHHHHHHHHHHHHcCEEEEEecc-ccccccCCCCceeEEEEEECCCCeE
Confidence 589999999764321 111 11223345678899887765332 221 1 122345677788999997
Q ss_pred eee
Q psy17819 229 LAT 231 (272)
Q Consensus 229 ~~~ 231 (272)
+..
T Consensus 129 ~~~ 131 (345)
T PRK13286 129 VQK 131 (345)
T ss_pred EEE
Confidence 643
No 91
>KOG0257|consensus
Probab=54.18 E-value=55 Score=29.63 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHcCcEEEEeeeeec--cCCeeEEEEEEEcccCCCCCCccccccccccCCCCceEEeeCCceEEEEee
Q psy17819 74 GITSKTLSNVAKEKEIFLVGGSIPEL--DNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGIC 150 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~Gs~~~~--~~~~~yns~~v~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC 150 (272)
++.++.|.++|+++++.||.-..++. .++.-+-+..- +|+ ...+-++-|+--..|..-|+|+|=+|.
T Consensus 191 ReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~as------lPg----m~ertitvgS~gKtf~~TGWrlGW~ig 259 (420)
T KOG0257|consen 191 REELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIAS------LPG----MYERTITVGSFGKTFGVTGWRLGWAIG 259 (420)
T ss_pred HHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeec------CCc----hhheEEEeccccceeeeeeeeeeeeec
Confidence 78899999999999999888866654 23332333222 232 233445566666777788999998887
No 92
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=53.93 E-value=49 Score=28.04 Aligned_cols=63 Identities=21% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 28 NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+..++.+++.++.|..-|++.|++|..... +... ..+..... .+.++.+.+.|+++|+.+.+=
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~-~~~~~~~~--~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YEEH-DEETRRRF--REGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc-cCcC-CHHHHHHH--HHHHHHHHHHHHHcCCEEEEe
Confidence 456778889999999999999999753211 1111 01111111 345677788888888876553
No 93
>PTZ00261 acyltransferase; Provisional
Probab=53.24 E-value=39 Score=30.02 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 30 NLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
..+.+.+.+++..++|-.+++|||..-+-- ...+ .++..-...+|.+.++.|+.
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~--------gg~L--~pFK~GaF~LAieagvPIVP 253 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAINKH--------PQVL--QTFRYGTFATIIKHRMEVYY 253 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCCcCC--------CCcC--CCCcHHHHHHHHHcCCCEEE
Confidence 344455566666788999999999975310 0011 34566677788888888643
No 94
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.67 E-value=75 Score=26.87 Aligned_cols=63 Identities=21% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 28 NKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+..++.+++.++.|++-|+..|+++-.. .++... ........ .+.++.+.+.|+++++.+.+=
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~~~~-~~~~~~~~--~~~l~~l~~~A~~~GV~i~iE 157 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLAGYD-VYYEQA-NNETRRRF--IDGLKESVELASRASVTLAFE 157 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcc-cccccc-HHHHHHHH--HHHHHHHHHHHHHhCCEEEEe
Confidence 4567888999999999999999986321 111111 11111111 245677888888888865543
No 95
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.38 E-value=36 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=30.5
Q ss_pred cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCc
Q psy17819 165 KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQ 207 (272)
Q Consensus 165 ~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g 207 (272)
+.||++++++.+-+ ......++..|.+++++++++++.|
T Consensus 47 ~~aD~VIv~t~~vs----H~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 47 KKADLVIVFTDYVS----HNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred CCCCEEEEEeCCcC----hHHHHHHHHHHHHcCCcEEEECCCC
Confidence 57899999888643 3445677788999999999998654
No 96
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=52.11 E-value=52 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCC
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNC 57 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~ 57 (272)
+.+.+.+.+..++|-.+++|||..-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34455667777889999999999764
No 97
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.92 E-value=56 Score=25.77 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEeCCC---CCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 28 NKNLENAVRFIRKAADNGASLIVLPEC---FNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dlvvfPE~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+..++.+.+.++.|...|++.++++=. .......+ .....+ .+.++.+.+.|+++++.+++=
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~---~~~~~~--~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE---ENWERL--AENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH---HHHHHH--HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH---HHHHHH--HHHHHHHHhhhhhhcceEEEe
Confidence 445888899999999999999999843 11111111 111112 356778888888889876554
No 98
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=51.90 E-value=66 Score=27.17 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHcCCcEEEeccccCC-----CCCc---------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCcccee
Q psy17819 158 LAQVYRKKGCDLLIYPGAFNM-----TTGP---------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWG 217 (272)
Q Consensus 158 ~~~~~~~~ga~lil~p~~~~~-----~~~~---------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G 217 (272)
+.+.++++|||+++.|-.+.. .... ..+....+..|.+++++++..... . ..+-..+-
T Consensus 26 ~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~-~~~~~~yN 103 (280)
T cd07574 26 WVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIAGSMP-V-REDGRLYN 103 (280)
T ss_pred HHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEecceE-E-cCCCCeEE
Confidence 445566789999999875421 1000 112234456788899988743211 1 11223455
Q ss_pred eeEEECCCCce
Q psy17819 218 HSTVVDPWANI 228 (272)
Q Consensus 218 ~S~i~~p~G~~ 228 (272)
.+.+++|+|.+
T Consensus 104 s~~~i~~~G~v 114 (280)
T cd07574 104 RAYLFGPDGTI 114 (280)
T ss_pred EEEEECCCCCE
Confidence 77888999976
No 99
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=50.45 E-value=40 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
...++.++|-.++||||...+-.... ..+... .++..-..++|.+.++.||-=
T Consensus 90 ~~~~~L~~G~~l~IFPEGtrs~~~~~----~g~~~~-~~fk~G~~~lA~~~~~pIvPv 142 (210)
T cd07986 90 EALRHLKNGGALIIFPAGRVSTASPP----FGRVSD-RPWNPFVARLARKAKAPVVPV 142 (210)
T ss_pred HHHHHHhCCCEEEEECCccccccccc----CCcccc-CCccHHHHHHHHHHCCCEEEE
Confidence 34445667889999999975422110 000001 456677888999998886644
No 100
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=50.41 E-value=85 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCcEEEecccc
Q psy17819 157 ELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~ 176 (272)
+..+.++++|+|+++.|-.+
T Consensus 23 ~~i~~A~~~gadlvvfPE~~ 42 (261)
T cd07570 23 EAIREAKAQGADLVVFPELS 42 (261)
T ss_pred HHHHHHHHcCCCEEEccchh
Confidence 45566678899999999754
No 101
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=49.69 E-value=43 Score=26.67 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHC--CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 29 KNLENAVRFIRKAADN--GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~--~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
...+.+.+.+++..+. +..+++|||..-. . ....+...++|++.++.+.--
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~--------------~-~~~~~~~~~~a~k~~~p~l~~ 138 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRF--------------T-EEKKERSQEFAEKNGLPPLKH 138 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCC--------------C-HHHHHHHHHHHHHcCCCCcce
Confidence 3445556666655543 7889999998643 1 223344457788877776554
No 102
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=49.17 E-value=70 Score=25.06 Aligned_cols=65 Identities=8% Similarity=-0.085 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCCCCC--cchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEee
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECFNCPYG--TKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGS 95 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs 95 (272)
.++-.+.++...+.|.|-||+--....+.. +..+.......+....++.+.++|.++|+.|.+|.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 455667777777889999999866655432 11110000111226789999999999999999993
No 103
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=48.85 E-value=1.6e+02 Score=24.56 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=44.2
Q ss_pred CceEEeeCCceEEEEeecCCCC-----------------------------hHHHHH--HHHcCCcEEEeccccCCCCC-
Q psy17819 134 SFSMFNNGICNIGLGICYDMRF-----------------------------PELAQV--YRKKGCDLLIYPGAFNMTTG- 181 (272)
Q Consensus 134 ~~~v~~~~~~~igv~IC~D~~~-----------------------------pe~~~~--~~~~ga~lil~p~~~~~~~~- 181 (272)
.+.+++++|.|||++-+.+... +.+.+. .+++++|++++...|+.+..
T Consensus 120 ~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~ 199 (250)
T PF09587_consen 120 RPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYEN 199 (250)
T ss_pred CeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCCC
Confidence 3567788899999888876541 112221 22468999999888765421
Q ss_pred -chhHHHHHHHHhhhCceEEEEEcCC
Q psy17819 182 -PLHWELLVRSRANDNQVYVAACSPA 206 (272)
Q Consensus 182 -~~~~~~~~~~ra~en~~~vv~~n~~ 206 (272)
+..+....-...++.|.-++.....
T Consensus 200 ~p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 200 YPTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 2333333334456778777766543
No 104
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=48.50 E-value=96 Score=23.99 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=41.4
Q ss_pred cEEEEEeecc------CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhh-hhhhcCCChHHHHHHHHHHH
Q psy17819 14 FKIALVQMTV------GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE-YSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 14 iria~~Q~~~------~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~a~~ 86 (272)
..+.++.+.. ..+.++..+.+..+++++...+++++++.-....+.. .... ..... ....+.++++|++
T Consensus 68 ~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~~--~~~~~~~~~~--~~~n~~l~~~a~~ 143 (185)
T cd01832 68 PDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVLE--PFRRRVRARL--AAYNAVIRAVAAR 143 (185)
T ss_pred CCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCccccc--hhHHHHHHHH--HHHHHHHHHHHHH
Confidence 4556665532 1345566677777777777778888887432221111 1110 11112 4567788889988
Q ss_pred cCcEE
Q psy17819 87 KEIFL 91 (272)
Q Consensus 87 ~~~~i 91 (272)
+++.+
T Consensus 144 ~~v~~ 148 (185)
T cd01832 144 YGAVH 148 (185)
T ss_pred cCCEE
Confidence 87653
No 105
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=48.49 E-value=77 Score=24.56 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=44.8
Q ss_pred ccEEEEEeeccC-----CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCc-chhhhhhhhcCCChHHHHHHHHHHH
Q psy17819 13 SFKIALVQMTVG-----KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT-KYFREYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 13 ~iria~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
+..+.+++.... .+.++..+.+.++++.+.+.++.+|+.--........ .........+ ..+-+.++++|++
T Consensus 59 ~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~--~~~n~~~~~~a~~ 136 (183)
T cd04501 59 KPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKL--KSLNRWLKDYARE 136 (183)
T ss_pred CCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHH--HHHHHHHHHHHHH
Confidence 346777776431 2466777777788888888888877763211111110 0001111222 4677888999998
Q ss_pred cCcEEE
Q psy17819 87 KEIFLV 92 (272)
Q Consensus 87 ~~~~iv 92 (272)
.++.++
T Consensus 137 ~~v~~v 142 (183)
T cd04501 137 NGLLFL 142 (183)
T ss_pred cCCCEE
Confidence 876644
No 106
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=48.36 E-value=79 Score=26.71 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 27 KNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 27 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+..++++++.++.|.+-|++.+++.-....+...+... ... .+.++.+.+.|+++++.+.+=
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~---~~~--~~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGL---KRV--IEALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH---HHH--HHHHHHHHHhccCCCCEEEEe
Confidence 567888899999999999999988744332211111111 111 234555566666778875554
No 107
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=47.79 E-value=1.7e+02 Score=25.79 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=45.9
Q ss_pred ceEEEEeecCCCChHHHHHHHHcCCcEEEeccc-cCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 143 CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA-FNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 143 ~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~-~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
.++.++-|+=...+++.+.+...|++=|+.-.. .+.-+ .+.+..-.-.++.+.+++||.++.++.
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p-~~~~~~~~l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSYGVGNAP-QNPALLQELKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccCCCCCCC-CCHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 578888898888999999888888887776543 22211 112333334578899999999998865
No 108
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=47.31 E-value=1.4e+02 Score=25.03 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCcEEEeccccCC--CC-Cch-h-----------HHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNM--TT-GPL-H-----------WELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTV 221 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~--~~-~~~-~-----------~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i 221 (272)
++.+.++.+|+|+++.|-.+.. .. ... . .....+..|.+++++++.... . ..+-.++-...+
T Consensus 23 ~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~G~~--~-~~~~~~yNs~~v 99 (268)
T cd07580 23 ELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAAELGLYIVAGFA--E-RDGDRLYNSAVL 99 (268)
T ss_pred HHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHHHcCcEEEeecc--c-ccCCceEEEEEE
Confidence 3445566789999999975332 11 110 0 122334567788888775421 1 112235567788
Q ss_pred ECCCCce
Q psy17819 222 VDPWANI 228 (272)
Q Consensus 222 ~~p~G~~ 228 (272)
++++|.+
T Consensus 100 i~~~g~~ 106 (268)
T cd07580 100 VGPDGVI 106 (268)
T ss_pred ECCCCcE
Confidence 8998864
No 109
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=45.92 E-value=98 Score=25.81 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec-cCCeeEEEE
Q psy17819 31 LENAVRFIRKAADNGASLIV-LPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL-DNDKVYNAA 108 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvv-fPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~-~~~~~yns~ 108 (272)
++.+.+.+++++ +++|+|| .+-.-.. + ...+ .+..+.+.+...+.|.-+|+|..+=. .+=..|+..
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e---------~-~~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~ 237 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIE---------Y-ENYP-TPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGK 237 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCC---------C-CCCC-CHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCE
Confidence 377888888887 6789855 4443211 1 1123 45566666666667899999966522 333455544
Q ss_pred EE
Q psy17819 109 TV 110 (272)
Q Consensus 109 ~v 110 (272)
.+
T Consensus 238 ~I 239 (250)
T PF09587_consen 238 PI 239 (250)
T ss_pred EE
Confidence 44
No 110
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=44.88 E-value=55 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCC
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNC 57 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~ 57 (272)
....+.+.++.++|-.+++|||...+
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 34445566667789999999999854
No 111
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=44.54 E-value=1.4e+02 Score=24.93 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccEEEEEeecc-CC---CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcc-hhhhhhhhcCCChHHHHHHHHHHHc
Q psy17819 13 SFKIALVQMTV-GK---DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK-YFREYSEEIGSGITSKTLSNVAKEK 87 (272)
Q Consensus 13 ~iria~~Q~~~-~~---~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~a~~~ 87 (272)
++|||.+|+.- .+ ++...-+++.++++. +|++..|=+.-..-.++ +..-.--.+.+.+.++.++++-++.
T Consensus 3 ~ikva~~~L~gC~GC~~slldl~E~L~dll~~-----~div~~~~l~D~keiPEvDValVEGsV~~ee~lE~v~ElReka 77 (247)
T COG1941 3 KIKVATVWLTGCSGCHMSLLDLYEKLLDLLED-----ADIVYCPTLVDEKEIPEVDVALVEGSVCDEEELELVKELREKA 77 (247)
T ss_pred ceEEEEEEeccccchHHHHHhHHHHHHHhhhh-----hcEEEeecccccccCCcccEEEEecccCcHHHHHHHHHHHHhC
Confidence 68999999973 33 333444444444443 37777776554331221 0000000122267888899999999
Q ss_pred CcEEEEeeeeeccCC
Q psy17819 88 EIFLVGGSIPELDND 102 (272)
Q Consensus 88 ~~~iv~Gs~~~~~~~ 102 (272)
++.|-+|+- -..||
T Consensus 78 kivVA~GsC-A~~Gg 91 (247)
T COG1941 78 KIVVALGSC-AVTGG 91 (247)
T ss_pred cEEEEEecc-hhcCC
Confidence 999999954 33444
No 112
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=44.29 E-value=78 Score=25.73 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+.++.++|-.+++|||..-+.. ... .++..-...+|.+.++.|+.-
T Consensus 114 ~~~~~l~~g~~v~IfPEGtr~~~---------~~~--~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 114 RCMELLKKGASVFFFPEGTRSKD---------GKL--AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCC---------Ccc--cCchhhHHHHHHHcCCCEEEE
Confidence 34445567889999999964310 011 334556677888998886655
No 113
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=43.94 E-value=1.7e+02 Score=24.58 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCcEEEeccccCCCCCch--h------------HHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEE
Q psy17819 157 ELAQVYRKKGCDLLIYPGAFNMTTGPL--H------------WELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVV 222 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~~~~~~~~--~------------~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~ 222 (272)
.+.+..+++||++++.|-.+....... . ........|.+....++... .-. .. ...=.+.++
T Consensus 26 ~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ivg~~-~~~-~~--~~~~~~~~i 101 (274)
T COG0388 26 RLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAEEGGVIIVGGP-LPE-RE--KLYNNAALI 101 (274)
T ss_pred HHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHHhCCeEEEEee-eec-cc--cceeeEEEE
Confidence 345566778999999997654321111 1 11233334445565555432 111 11 334556777
Q ss_pred CCCCceeee
Q psy17819 223 DPWANILAT 231 (272)
Q Consensus 223 ~p~G~~~~~ 231 (272)
+++|+++..
T Consensus 102 ~~~G~ii~~ 110 (274)
T COG0388 102 DPDGEILGK 110 (274)
T ss_pred cCCCcEEeE
Confidence 899988754
No 114
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=41.95 E-value=97 Score=24.52 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=41.4
Q ss_pred cEEEEEeeccC-----CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcC
Q psy17819 14 FKIALVQMTVG-----KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKE 88 (272)
Q Consensus 14 iria~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 88 (272)
..+.++++.+. .+.++..+.+.++++++.+.++++++++-. ++. . +. .... ....+.++++|++++
T Consensus 72 pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~---~-~~---~~~~-~~~~~~~~~~a~~~~ 142 (191)
T PRK10528 72 PRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPA---N-YG---RRYN-EAFSAIYPKLAKEFD 142 (191)
T ss_pred CCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCC---c-cc---HHHH-HHHHHHHHHHHHHhC
Confidence 45667776532 356677777778888887778888776311 111 0 00 0111 234567888999988
Q ss_pred cEEE
Q psy17819 89 IFLV 92 (272)
Q Consensus 89 ~~iv 92 (272)
+..+
T Consensus 143 v~~i 146 (191)
T PRK10528 143 IPLL 146 (191)
T ss_pred CCcc
Confidence 7643
No 115
>PRK10799 metal-binding protein; Provisional
Probab=41.71 E-value=1.2e+02 Score=25.38 Aligned_cols=57 Identities=7% Similarity=-0.137 Sum_probs=35.5
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEe--ccccCCCCCc-hhHHHHHHHHhhhCceEEEEE
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIY--PGAFNMTTGP-LHWELLVRSRANDNQVYVAAC 203 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~--p~~~~~~~~~-~~~~~~~~~ra~en~~~vv~~ 203 (272)
+|++|-|. .+++.+.+..+|||+|+. |..|.+.... ..........++++++.++.+
T Consensus 37 ~I~~alD~-t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 37 KIVTGVTA-SQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_pred EEEEEeCC-CHHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEE
Confidence 78888886 466778888899999994 6555432111 112222334667777665543
No 116
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=41.36 E-value=1.3e+02 Score=21.79 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH-cCcEEEEee
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE-KEIFLVGGS 95 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~~~iv~Gs 95 (272)
-+++...+++..+.++|.|.|.=--..+... . +- +..+.+.+..++ +++.||.|+
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~------~-~C---P~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPH------G-PC---PHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCC------C-CC---CCHHHHHHHHHHHhCCCEeeec
Confidence 3455566666678899999997655443210 0 12 224444444444 499999885
No 117
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=41.15 E-value=85 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 33 NAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 33 ~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+.+..|.+|....+++++|-|-.-. ....+- ++.+..++++|++-++.+++-
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSA---------LDPElV-gEVLkv~~~LAeEgrTMv~VT 209 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSA---------LDPELV-GEVLKVMQDLAEEGRTMVVVT 209 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCccc---------CCHHHH-HHHHHHHHHHHHhCCeEEEEe
Confidence 3445667778889999999874311 111222 789999999999988877776
No 118
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=40.82 E-value=94 Score=27.91 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCcEEEeccccCCC-C-C-chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceee
Q psy17819 166 GCDLLIYPGAFNMT-T-G-PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA 230 (272)
Q Consensus 166 ga~lil~p~~~~~~-~-~-~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~ 230 (272)
|+|+++.|-..... . . .+......+..|.+++++++.-...-...+...+.-...+++|+|+++.
T Consensus 197 ~~dlVv~PE~a~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~ 264 (391)
T TIGR00546 197 KPDLVVWPETAFPFDLENSPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQ 264 (391)
T ss_pred CCCEEEcCccccccchhhCcHHHHHHHHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccc
Confidence 79999999753221 1 1 1113344556677888888754321111111134566778899997654
No 119
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.32 E-value=85 Score=26.56 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 35 VRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 35 ~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
+-++.+|..++||++++=|=+.. .+...+ ..+.+.|.++.++ +++|+.=++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~g------vD~~~~----~~i~~lL~~l~~e-g~tIl~vtH 197 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTG------VDVAGQ----KEIYDLLKELRQE-GKTVLMVTH 197 (254)
T ss_pred HHHHHHHhccCCCEEEecCCccc------CCHHHH----HHHHHHHHHHHHC-CCEEEEEeC
Confidence 34667888999999999996543 111111 4577888888888 777777644
No 120
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.72 E-value=1.7e+02 Score=22.27 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=44.1
Q ss_pred cEEEEEeeccC-----CCHHHHHHHHHHHHHHHHH--CCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH
Q psy17819 14 FKIALVQMTVG-----KDKNKNLENAVRFIRKAAD--NGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 14 iria~~Q~~~~-----~~~~~n~~~~~~~i~~A~~--~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
-.+.+++.... .+.+...+.+.++++.+.+ .++.+++..=.-..+.. ......+ .++.+.++++|++
T Consensus 49 pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~----~~~~~~~--~~~n~~l~~~a~~ 122 (169)
T cd01828 49 PKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK----SIPNEQI--EELNRQLAQLAQQ 122 (169)
T ss_pred CCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC----cCCHHHH--HHHHHHHHHHHHH
Confidence 46677776531 3467777777788887776 78888886322111100 0111222 4567888899998
Q ss_pred cCcEEE
Q psy17819 87 KEIFLV 92 (272)
Q Consensus 87 ~~~~iv 92 (272)
+++.++
T Consensus 123 ~~~~~i 128 (169)
T cd01828 123 EGVTFL 128 (169)
T ss_pred CCCEEE
Confidence 888755
No 121
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=39.56 E-value=1.3e+02 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=35.5
Q ss_pred EEEeecCCCChHHHHHHHHcCCcEEEe--ccccCCCCC--chhHHHHHHHHhhhCceEEEEE
Q psy17819 146 GLGICYDMRFPELAQVYRKKGCDLLIY--PGAFNMTTG--PLHWELLVRSRANDNQVYVAAC 203 (272)
Q Consensus 146 gv~IC~D~~~pe~~~~~~~~ga~lil~--p~~~~~~~~--~~~~~~~~~~ra~en~~~vv~~ 203 (272)
+|++|-|. .+++.+.+..+|||+|+. |..|.+... ......- ....+++++.+.++
T Consensus 38 ~I~~alD~-t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~vy~~ 97 (249)
T TIGR00486 38 KVVVAVDA-SESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDISLYSA 97 (249)
T ss_pred EEEEEecC-CHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCeEEEe
Confidence 68888886 456778888899999994 666543211 1112222 34578888766654
No 122
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.23 E-value=1.7e+02 Score=22.80 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=39.3
Q ss_pred cEEEEEeecc-----CCCHHHHHHHHHHHHHHHHH--CCCcEEEeC--CCCCCCCCcchhhhhhhhcCCChHHHHHHHHH
Q psy17819 14 FKIALVQMTV-----GKDKNKNLENAVRFIRKAAD--NGASLIVLP--ECFNCPYGTKYFREYSEEIGSGITSKTLSNVA 84 (272)
Q Consensus 14 iria~~Q~~~-----~~~~~~n~~~~~~~i~~A~~--~~~dlvvfP--E~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a 84 (272)
..+.++.... ..+.++..+.+.++++.+.+ .++.+++.. -+......+........... ...-+.++++|
T Consensus 68 pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~a 146 (191)
T cd01836 68 FDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQPLRWLLGRRA-RLLNRALERLA 146 (191)
T ss_pred CCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4455555432 13456667777777777766 577887752 22111111111111111111 45667888888
Q ss_pred HHc-CcEE
Q psy17819 85 KEK-EIFL 91 (272)
Q Consensus 85 ~~~-~~~i 91 (272)
.++ ++..
T Consensus 147 ~~~~~~~~ 154 (191)
T cd01836 147 SEAPRVTL 154 (191)
T ss_pred hcCCCeEE
Confidence 887 5553
No 123
>KOG2733|consensus
Probab=39.06 E-value=1.2e+02 Score=27.15 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=38.2
Q ss_pred EEeecCCCChHHHHHHHHcCCcEEEeccccCC-------------------CCCchhHHHHHHH----HhhhCceEEEEE
Q psy17819 147 LGICYDMRFPELAQVYRKKGCDLLIYPGAFNM-------------------TTGPLHWELLVRS----RANDNQVYVAAC 203 (272)
Q Consensus 147 v~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~-------------------~~~~~~~~~~~~~----ra~en~~~vv~~ 203 (272)
++|| |..+++...++++ .+.+|++...-.- ..|..+|...++. +|.|+|.||+.+
T Consensus 66 i~i~-D~~n~~Sl~emak-~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMAK-QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred EEEe-cCCCHHHHHHHHh-hhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 4444 7778888888874 4888887544111 1234566666654 699999999988
Q ss_pred cC
Q psy17819 204 SP 205 (272)
Q Consensus 204 n~ 205 (272)
++
T Consensus 144 CG 145 (423)
T KOG2733|consen 144 CG 145 (423)
T ss_pred cc
Confidence 64
No 124
>PRK12677 xylose isomerase; Provisional
Probab=39.06 E-value=2.1e+02 Score=25.84 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcE-EEeCC
Q psy17819 28 NKNLENAVRFIRKAADNGASL-IVLPE 53 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dl-vvfPE 53 (272)
+..++.+++.|+.|.+-|++. ++||=
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 345788889999999999985 55554
No 125
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=39.05 E-value=69 Score=25.95 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
..++|.+.|++++|-|=+ ...+.+.|+++++..+-|.+
T Consensus 72 ~a~~a~~aGA~FivSP~~----------------------~~~v~~~~~~~~i~~iPG~~ 109 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGF----------------------DPEVIEYAREYGIPYIPGVM 109 (196)
T ss_dssp HHHHHHHHT-SEEEESS------------------------HHHHHHHHHHTSEEEEEES
T ss_pred HHHHHHHcCCCEEECCCC----------------------CHHHHHHHHHcCCcccCCcC
Confidence 446677889999999853 25578889999999999943
No 126
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=38.07 E-value=1.2e+02 Score=23.20 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=41.4
Q ss_pred cEEEEEeeccC-----CCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcC
Q psy17819 14 FKIALVQMTVG-----KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKE 88 (272)
Q Consensus 14 iria~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 88 (272)
..+.+++.... .+.+...+.+.++++.+.+.++.+++..=.....+. .. .. ....+.++++|++++
T Consensus 65 pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~-~~------~~--~~~~~~~~~~a~~~~ 135 (177)
T cd01822 65 PDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYG-PR------YT--RRFAAIYPELAEEYG 135 (177)
T ss_pred CCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccc-hH------HH--HHHHHHHHHHHHHcC
Confidence 35566665431 245667777778888887778998875110001000 00 01 456788889999988
Q ss_pred cEEE
Q psy17819 89 IFLV 92 (272)
Q Consensus 89 ~~iv 92 (272)
+.++
T Consensus 136 ~~~~ 139 (177)
T cd01822 136 VPLV 139 (177)
T ss_pred CcEe
Confidence 7644
No 127
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=37.93 E-value=2.1e+02 Score=25.03 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=45.5
Q ss_pred ceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 143 CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 143 ~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
.++.++-++-...+++.+.+...|++=|+.-..-.-. -+..|.... .++.+.+++|+.++.++.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~G~Gn-~p~~~~~~l-~~a~~~gipVV~~sq~~~ 275 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGTGAGN-VPPDLLEAL-KEALERGIPVVRTSRCLN 275 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEeeCCCC-CCHHHHHHH-HHHHHCCCEEEEeccCCC
Confidence 5799999999999999988877888877655442111 123343333 467888999999998864
No 128
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=37.50 E-value=78 Score=24.61 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHHHHC-CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 35 VRFIRKAADN-GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 35 ~~~i~~A~~~-~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
.+.+.++.++ +-.+++|||....... ... ..+..-..++|++.+..|+.-++
T Consensus 90 ~~~~~~~l~~~g~~v~ifPeG~~~~~~---------~~~-~~~~~g~~~la~~~~~~IvPv~i 142 (187)
T cd06551 90 LKYVARLLSKPGSVVWIFPEGTRTRRD---------KRP-LQFKPGVAHLAEKAGVPIVPVAL 142 (187)
T ss_pred HHHHHHHHhcCCcEEEEeCCcccCCCC---------CCc-ccccchHHHHHHHcCCcEEEEEE
Confidence 3344455566 8999999999754211 011 34566778889998888877633
No 129
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=37.48 E-value=1.5e+02 Score=23.06 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=42.8
Q ss_pred ccEEEEEeecc---C-------CCHHHHHHHHHHHHHHHHH--CCCcEEEeCCCCCCCCCcchh-----------hhhhh
Q psy17819 13 SFKIALVQMTV---G-------KDKNKNLENAVRFIRKAAD--NGASLIVLPECFNCPYGTKYF-----------REYSE 69 (272)
Q Consensus 13 ~iria~~Q~~~---~-------~~~~~n~~~~~~~i~~A~~--~~~dlvvfPE~~~~g~~~~~~-----------~~~~~ 69 (272)
...+.+++... . .+.+...+.++++++++.+ .++.+++.-- +....... .....
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~---~~~~~~~~~~~~~~~~~~~~~~~~ 139 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITP---PPVDEEAWEKSLEDGGSQPGRTNE 139 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCC---CCCCHHHHhhhhccccCCccccHH
Confidence 46677777742 1 1355666667777777766 5788877621 11111111 01111
Q ss_pred hcCCChHHHHHHHHHHHcCcEEE
Q psy17819 70 EIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 70 ~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
.+ ..+.+.++++|+++++.++
T Consensus 140 ~~--~~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 140 LL--KQYAEACVEVAEELGVPVI 160 (199)
T ss_pred HH--HHHHHHHHHHHHHhCCcEE
Confidence 12 4566788999999987755
No 130
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=36.81 E-value=48 Score=19.31 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=10.9
Q ss_pred eeeEEECCCCceeeeCC
Q psy17819 217 GHSTVVDPWANILATSQ 233 (272)
Q Consensus 217 G~S~i~~p~G~~~~~~~ 233 (272)
|.|.|+-|+|....-.+
T Consensus 1 G~SGii~~dG~~~q~~~ 17 (40)
T PF08140_consen 1 GPSGIITPDGTNVQFPH 17 (40)
T ss_pred CCCceECCCCCEEECCc
Confidence 45777778886654433
No 131
>PF02833 DHHA2: DHHA2 domain; InterPro: IPR004097 This domain is called DHHA2 since it is often associated with the DHH domain (IPR001667 from INTERPRO) and is diagnostic of DHH subfamily 2 members []. The domain is about 120 residues long and contains a conserved DXK motif at its amino terminus. It is present in inorganic pyrophosphatases and in exopolyphosphatase of Saccharomyces cerevisiae.; GO: 0016462 pyrophosphatase activity, 0005737 cytoplasm; PDB: 1WPP_A 1K20_A 1I74_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2ENX_A 2EB0_A ....
Probab=35.81 E-value=49 Score=24.29 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=28.9
Q ss_pred cccccccccccccEEEEEeec-cC-CCHHHHHHHHHHHHHHH-HHCCCcEEEe
Q psy17819 2 FSQIRKMSTAKSFKIALVQMT-VG-KDKNKNLENAVRFIRKA-ADNGASLIVL 51 (272)
Q Consensus 2 ~~~~~~~~m~~~iria~~Q~~-~~-~~~~~n~~~~~~~i~~A-~~~~~dlvvf 51 (272)
..++++..+. ..+||+.|.. .. ..+....+.+.+.+++. .+++.|++++
T Consensus 21 ~~D~K~f~~~-~~~vgis~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~l~l 72 (127)
T PF02833_consen 21 RKDYKEFEFG-GKKVGISQVETMDLEELLSRKDELLEELEEFCEERKLDLLFL 72 (127)
T ss_dssp TTTEEEEEET-TEEEEEEEEEES-HHHHHTTHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HhCceeeecC-CeEEEEEeeeecCHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3466666665 7999999995 32 23333334455555443 4678998764
No 132
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.79 E-value=77 Score=25.77 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=29.6
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
..++|.+.|++++|-|-+. ..+.+.|+++++..+-|.+
T Consensus 68 ~a~~ai~aGA~FivSP~~~----------------------~~vi~~a~~~~i~~iPG~~ 105 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGTT----------------------QELLAAANDSDVPLLPGAA 105 (201)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEeCCCC
Confidence 4466778899999998643 4567789999999999944
No 133
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=35.62 E-value=1.1e+02 Score=26.02 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
++.+-++.+|..++++++++=|=... ++ ... . -+.++.+++++++.++++|+=.+
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~------LD-i~~--Q-~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSH------LD-IAH--Q-IEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc------cC-HHH--H-HHHHHHHHHHHHhcCCEEEEEec
Confidence 44555778899999999999884422 11 111 1 35789999999999998888733
No 134
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=35.59 E-value=1.2e+02 Score=23.59 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeee
Q psy17819 29 KNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPE 98 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~ 98 (272)
.-++.....++.|.+.++||+|+--+.- .+...+-....+.+ |-..+|.|+++ ++.
T Consensus 77 ~~La~A~~~l~~al~~~~DLlivNkFGk------------~Ea~G~Glr~~i~~-A~~~giPVLt~-V~~ 132 (159)
T PF10649_consen 77 GALAEASAALRRALAEGADLLIVNKFGK------------QEAEGRGLRDEIAA-ALAAGIPVLTA-VPP 132 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcccHH------------hhhcCCCHHHHHHH-HHHCCCCEEEE-ECH
Confidence 4577788889999999999999988751 12221334444444 45568999988 644
No 135
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.92 E-value=95 Score=26.53 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeee
Q psy17819 29 KNLENAVRFIRKAADNGAS-LIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIP 97 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~d-lvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~ 97 (272)
.+++...++.+.|.+.|+| +++.|=+... ..+ .+..+.++.++...++.|++=..|
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~------------~~~-~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNK------------PTQ-EGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCC------------CCH-HHHHHHHHHHHhcCCCCEEEEECc
Confidence 3567778888888999999 4555544321 011 456777888888777776654344
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.77 E-value=1.1e+02 Score=25.92 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=25.7
Q ss_pred EEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 147 LGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 147 v~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
+++++-+..+|..+.+...|||-+++-|+.
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 556777999999999998999999988874
No 137
>KOG0806|consensus
Probab=34.31 E-value=91 Score=27.02 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHcCCcEEEeccccCCCCCc-----------------hhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEE
Q psy17819 159 AQVYRKKGCDLLIYPGAFNMTTGP-----------------LHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTV 221 (272)
Q Consensus 159 ~~~~~~~ga~lil~p~~~~~~~~~-----------------~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i 221 (272)
....+++|+++|+.|-.+....+. ..+...+...|.+++|+++.-. .-....+..-+..+.+
T Consensus 39 i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~~~~~~~i~g~-i~~~~~~~k~yns~~~ 117 (298)
T KOG0806|consen 39 VKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAERLSCYIIGGS-IEEEALGDKLYNSCAD 117 (298)
T ss_pred HHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHhhceEEEecCc-chhhcccccccCcccc
Confidence 345678899999988542221111 2345667778899999988432 1111112334566777
Q ss_pred ECCCCceeee
Q psy17819 222 VDPWANILAT 231 (272)
Q Consensus 222 ~~p~G~~~~~ 231 (272)
++++|+.+..
T Consensus 118 ~~~~g~l~~~ 127 (298)
T KOG0806|consen 118 SSCPGDGLAK 127 (298)
T ss_pred cCCCcchhhe
Confidence 7777776544
No 138
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=33.64 E-value=97 Score=26.37 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeee
Q psy17819 29 KNLENAVRFIRKAADNGAS-LIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIP 97 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~d-lvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~ 97 (272)
.+++...++.+.|.+.|+| +++.|-+... ..+ .+..+.+++++...++.+++=..|
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~------------~~~-~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNK------------PSQ-EGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCC------------CCH-HHHHHHHHHHHhcCCCCEEEEECh
Confidence 3566778888888899999 5666544321 011 456777888888777776655343
No 139
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=33.61 E-value=1.7e+02 Score=21.79 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=41.0
Q ss_pred ccEEEEEeecc---CC------CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHH
Q psy17819 13 SFKIALVQMTV---GK------DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 13 ~iria~~Q~~~---~~------~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (272)
..++.++++.. .. +.++..+.+.++++.+...+ .++++--................... ....+.++++
T Consensus 61 ~~d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (179)
T PF13472_consen 61 KPDLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDPRDPKQDYLNRRI-DRYNQAIREL 138 (179)
T ss_dssp TCSEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSSTTTTHTTCHHHHH-HHHHHHHHHH
T ss_pred CCCEEEEEcccccccccccccccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccccccccchhhhhhH-HHHHHHHHHH
Confidence 46788888752 22 24556677777777776666 66555443322211110000111111 4567888999
Q ss_pred HHHcCcEEE
Q psy17819 84 AKEKEIFLV 92 (272)
Q Consensus 84 a~~~~~~iv 92 (272)
|+++++.++
T Consensus 139 a~~~~~~~i 147 (179)
T PF13472_consen 139 AKKYGVPFI 147 (179)
T ss_dssp HHHCTEEEE
T ss_pred HHHcCCEEE
Confidence 999877644
No 140
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.15 E-value=1.2e+02 Score=22.71 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcCcEEEE
Q psy17819 76 TSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 76 ~~~~l~~~a~~~~~~iv~ 93 (272)
+...++.+..++|+.++.
T Consensus 87 ~~~~~~~l~~~~gv~l~~ 104 (140)
T cd03770 87 VGLYMEILFPKKGVRFIA 104 (140)
T ss_pred HHHHHHHHHhhcCcEEEE
Confidence 344455555555666554
No 141
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=33.12 E-value=76 Score=26.96 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred cEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC
Q psy17819 14 FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFN 56 (272)
Q Consensus 14 iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~ 56 (272)
|||+.+..| .++..+.++.+.+++ ..+|+|++.|.=.
T Consensus 1 mkI~SwNVN---giRar~~~~~~~l~~---~~pDVlclQEtK~ 37 (261)
T COG0708 1 MKIASWNVN---GLRARLKKLLDWLEE---EQPDVLCLQETKA 37 (261)
T ss_pred CeeEEEehh---hHHHHHHHHHHHHHH---hCCCEEEEEeccc
Confidence 577777776 444555555556555 5789999999754
No 142
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.99 E-value=1.1e+02 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHc-CcEEEEe
Q psy17819 29 KNLENAVRFIRKAADNGAS-LIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEK-EIFLVGG 94 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~d-lvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~iv~G 94 (272)
.+++...++.+.|.+.|+| ++|.|=+... ..+ .+..+.++.+|... ++.|++=
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~------------~~~-~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLP------------LDV-DTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCC------------CCH-HHHHHHHHHHHHhCCCCcEEEE
Confidence 3567777888888899998 5666654322 011 45677888888877 5665543
No 143
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=32.40 E-value=1.5e+02 Score=19.64 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCcEEEeCCCC-CCCCCc---chhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 34 AVRFIRKAADNGASLIVLPECF-NCPYGT---KYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 34 ~~~~i~~A~~~~~dlvvfPE~~-~~g~~~---~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
..++++.|.+ +.+.||+..+. +-+... ..+.+.....+-....+.|+..|.++|+.++.
T Consensus 13 a~~iv~~~~~-~~~~Ivie~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~ 75 (82)
T TIGR01766 13 VKQIVEYAKE-NNGTIVLEDLKNIKEMVDKKSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIE 75 (82)
T ss_pred HHHHHHHHHH-cCCEEEECCccchhhhcchhhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEE
Confidence 3567777777 67999998876 322211 11111111122266889999999999998764
No 144
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=32.30 E-value=94 Score=32.02 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 34 AVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 34 ~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
..+.+.++.++|-.++||||...+. ...+ .++..-+.++|++.++.|+.=
T Consensus 500 ~~~~~~~~l~~g~~~~ifPeGt~~~---------~~~~--~~~~~g~~~~a~~~~~~i~pv 549 (1146)
T PRK08633 500 SLEFIRKALDDGEVVCIFPEGAITR---------NGQL--NEFKRGFELIVKGTDVPIIPF 549 (1146)
T ss_pred HHHHHHHHHhCCCEEEEECCcCCCC---------CCCc--cchhHHHHHHHHHCCCCEEEE
Confidence 3344446677788999999997541 1112 456778888999998886655
No 145
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.10 E-value=1e+02 Score=25.15 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=28.9
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
..+.|.+.|++++|-|-+. ..+.+.|+++++..+.|.+
T Consensus 72 ~a~~a~~aGA~FivsP~~~----------------------~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 72 QLRQAVDAGAQFIVSPGLT----------------------PELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCcEECCCC
Confidence 3456778899999888642 3567789999999999943
No 146
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=32.01 E-value=54 Score=20.56 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC
Q psy17819 189 VRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ 233 (272)
Q Consensus 189 ~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~ 233 (272)
.++++.-+|..+-.... .|....++|+|++++-..
T Consensus 9 ~ea~~l~~Gr~l~~~~~----------~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 9 EEARDLRHGRRLPAAGP----------PGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHHTT---B---------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHHhCCCccCCCCC----------CceEEEECCCCcEEEEEE
Confidence 35677778877776632 267999999999987763
No 147
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.70 E-value=1.7e+02 Score=20.69 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHcCcEEEEe
Q psy17819 74 GITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+..+.|.+++++++..+.+|
T Consensus 99 ~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 99 LEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHHHHhCCEEEEe
Confidence 567888999999999988887
No 148
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=31.70 E-value=2e+02 Score=21.89 Aligned_cols=76 Identities=8% Similarity=0.046 Sum_probs=41.8
Q ss_pred cEEEEEeeccC-----CCHHHHHHHHHHHHHHHHHC--CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHH
Q psy17819 14 FKIALVQMTVG-----KDKNKNLENAVRFIRKAADN--GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKE 86 (272)
Q Consensus 14 iria~~Q~~~~-----~~~~~n~~~~~~~i~~A~~~--~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 86 (272)
.++.+++..+. .+.++..+.++++++.+.+. ++.+++..-........ ........+ ..+-+.++++|++
T Consensus 52 pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~-~~~~~~~~~--~~~n~~l~~~a~~ 128 (174)
T cd01841 52 PSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE-IKTRSNTRI--QRLNDAIKELAPE 128 (174)
T ss_pred CCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-cccCCHHHH--HHHHHHHHHHHHH
Confidence 46777776431 35666777777777777654 56666543211111000 000011122 5677889999999
Q ss_pred cCcEEE
Q psy17819 87 KEIFLV 92 (272)
Q Consensus 87 ~~~~iv 92 (272)
+++.++
T Consensus 129 ~~~~~i 134 (174)
T cd01841 129 LGVTFI 134 (174)
T ss_pred CCCEEE
Confidence 886533
No 149
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=31.14 E-value=3.2e+02 Score=24.41 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=45.8
Q ss_pred ceEEEEeecCCCChHHHHH-HHHcCCcEEEeccc-cCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 143 CNIGLGICYDMRFPELAQV-YRKKGCDLLIYPGA-FNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 143 ~~igv~IC~D~~~pe~~~~-~~~~ga~lil~p~~-~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
.|+.++.+|-...+++.+. +...|++=|+.-+. .+ .. ...+. -.-.++.+.+++|+.+..+..
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~G~G-~~-~~~~~-~~i~~~~~~gi~VV~sSr~~~ 294 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGTGSG-NV-TPALI-ESIERASKRGIPVVYSSRCLS 294 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEECCC-CC-ChHHH-HHHHHHHHCCCeEEEEeccCC
Confidence 7899999999999988875 56889998776554 32 21 22222 223577888899999998864
No 150
>PRK07534 methionine synthase I; Validated
Probab=30.89 E-value=3.2e+02 Score=24.13 Aligned_cols=59 Identities=10% Similarity=0.002 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeeccCC
Q psy17819 26 DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDND 102 (272)
Q Consensus 26 ~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~~~~ 102 (272)
+.++-.+.+..+++.-.+.++|+++|--+.- -.....+.+++++.++.+++. +...++|
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~-----------------l~E~~a~~~~~~~~~~Pv~vS-ft~~~~g 183 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVETISA-----------------PEEIRAAAEAAKLAGMPWCGT-MSFDTAG 183 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCC-----------------HHHHHHHHHHHHHcCCeEEEE-EEECCCC
Confidence 4555666667677666688999999965431 233445566667778887777 5444444
No 151
>PRK10481 hypothetical protein; Provisional
Probab=30.82 E-value=2.2e+02 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEe
Q psy17819 26 DKNKNLENAVRFIRKAADNGASLIVL 51 (272)
Q Consensus 26 ~~~~n~~~~~~~i~~A~~~~~dlvvf 51 (272)
+.++...++.+.+++..++|+|.+++
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~d~ivl 96 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGYDVILL 96 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 34566677777888878889999775
No 152
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.82 E-value=1.3e+02 Score=24.64 Aligned_cols=66 Identities=20% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHH-HCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 31 LENAVRFIRKAA-DNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 31 ~~~~~~~i~~A~-~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
++.+.+.++++. +.++++||+==+...-....... ....+ ..+.+.|+.+|+++++++++=+...+
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~-~~~~~--~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGN-RQQEV--AEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCC-HHHHH--HHHHHHHHHHHHHhCCeEEEecccCh
Confidence 344444454443 35899998865443211100000 11112 46788999999999999988755433
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.03 E-value=3.2e+02 Score=22.65 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEeCCCCC-CCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 27 KNKNLENAVRFIRKAADNGASLIVLPECFN-CPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 27 ~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
.+...+.+.+.++.|.+-|+..|+.|=... .++..+... ... .+.+..+.+.|+++++.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~---~~~--~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIH---ATL--VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHH---HHH--HHHHHHHHHHHHHcCCEEEE
Confidence 355677788999999999999877642221 111111111 111 34556677778888877555
No 154
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=29.99 E-value=83 Score=27.48 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=51.1
Q ss_pred cccccEEEEEeecc--CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHc
Q psy17819 10 TAKSFKIALVQMTV--GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEK 87 (272)
Q Consensus 10 m~~~iria~~Q~~~--~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 87 (272)
++.+.|+-.+|-.. ....--.++.|.+.++..++.++++|||-..|-. .+.+..++. +-
T Consensus 162 i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG-----EFvE~~EPt--------------~v 222 (416)
T COG4100 162 ISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG-----EFVEEKEPT--------------HV 222 (416)
T ss_pred cCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch-----hhhhccCcc--------------cc
Confidence 55678888899753 3334456788888888888889999999988732 111111111 23
Q ss_pred CcEEEEeeeeeccCCeeEEE
Q psy17819 88 EIFLVGGSIPELDNDKVYNA 107 (272)
Q Consensus 88 ~~~iv~Gs~~~~~~~~~yns 107 (272)
+.-+++||.....+|.+-.+
T Consensus 223 GaDliAGSLIKNpGGgiakt 242 (416)
T COG4100 223 GADLIAGSLIKNPGGGIAKT 242 (416)
T ss_pred chhhhccceeeCCCCceeec
Confidence 66788997765566655443
No 155
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=29.97 E-value=77 Score=25.81 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=38.1
Q ss_pred EEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCC
Q psy17819 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPA 206 (272)
Q Consensus 145 igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~ 206 (272)
.++.+|-|.++|+..+...+.|+++|...++... ...+...+.++++.++.....
T Consensus 71 ~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~-------~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 71 PDVPLSIDTFNPEVAEAALKAGADIINDISGFED-------DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp TTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSS-------STTHHHHHHHHTSEEEEESES
T ss_pred CCeEEEEECCCHHHHHHHHHcCcceEEecccccc-------cchhhhhhhcCCCEEEEEecc
Confidence 3678999999999998877779999998887532 112223445566666665544
No 156
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=29.51 E-value=89 Score=25.61 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=28.2
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+++|.+.|++++|-|=+ ...+.+.|.++++.++-|
T Consensus 77 q~~~a~~aGa~fiVsP~~----------------------~~ev~~~a~~~~ip~~PG 112 (211)
T COG0800 77 QARQAIAAGAQFIVSPGL----------------------NPEVAKAANRYGIPYIPG 112 (211)
T ss_pred HHHHHHHcCCCEEECCCC----------------------CHHHHHHHHhCCCcccCC
Confidence 345677788888888864 255788899999999999
No 157
>PRK11756 exonuclease III; Provisional
Probab=29.38 E-value=93 Score=26.12 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=22.9
Q ss_pred cEEEEEeeccCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC
Q psy17819 14 FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFN 56 (272)
Q Consensus 14 iria~~Q~~~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~ 56 (272)
|||.....+- .....+++.+.++ +.+||+|+|.|.-.
T Consensus 1 mri~T~Nv~g---~~~~~~~i~~~i~---~~~pDIi~LQE~~~ 37 (268)
T PRK11756 1 MKFVSFNING---LRARPHQLEAIIE---KHQPDVIGLQETKV 37 (268)
T ss_pred CEEEEEEcCC---HHHHHHHHHHHHH---hcCCCEEEEEeccc
Confidence 4666555542 2334455555554 45899999999753
No 158
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.13 E-value=1.7e+02 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.3
Q ss_pred EEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 147 LGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 147 v~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
+++.+-+..++..+.+...|||.+++-|+.
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 556677888999999999999999988774
No 159
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=28.88 E-value=1.3e+02 Score=25.13 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=40.4
Q ss_pred cEEEE-Eeec-cCCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEE
Q psy17819 14 FKIAL-VQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFL 91 (272)
Q Consensus 14 iria~-~Q~~-~~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i 91 (272)
+++|+ +++. ++.+.+..++++.+++. +-|++-+-|..+--.. +.. .+....=.++|+++++.+
T Consensus 66 ~~vavGvHPr~iP~e~~~~l~~L~~~l~-----~e~VvAiGEiGLe~~t---------~~E-~evf~~QL~LA~e~dvPv 130 (254)
T COG1099 66 LKVAVGVHPRAIPPELEEVLEELEELLS-----NEDVVAIGEIGLEEAT---------DEE-KEVFREQLELARELDVPV 130 (254)
T ss_pred eeEEeccCCCCCCchHHHHHHHHHhhcc-----cCCeeEeeecccccCC---------HHH-HHHHHHHHHHHHHcCCcE
Confidence 45554 4443 45555554544444442 4467777776543111 111 344555567999999999
Q ss_pred EEeeeeecc
Q psy17819 92 VGGSIPELD 100 (272)
Q Consensus 92 v~Gs~~~~~ 100 (272)
++- .|.+.
T Consensus 131 iVH-TPr~n 138 (254)
T COG1099 131 IVH-TPRRN 138 (254)
T ss_pred EEe-CCCCc
Confidence 999 66653
No 160
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=28.77 E-value=1.3e+02 Score=25.71 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=48.1
Q ss_pred eCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCC--------
Q psy17819 140 NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNS-------- 211 (272)
Q Consensus 140 ~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~-------- 211 (272)
..|.||++++=.+.-.--+.+.+...||++.+..+|..+ .+...+.+.+ +.|+.|..-- |.+..
T Consensus 41 l~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplS-----TQDdvaAAL~-~~Gi~V~A~~--get~eey~~~i~~ 112 (268)
T PF05221_consen 41 LKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLS-----TQDDVAAALA-EEGIPVFAWK--GETDEEYWWCIEK 112 (268)
T ss_dssp TTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT-------HHHHHHHH-HTTEEEEE-T--T--HHHHHHHHHH
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcc-----cchHHHHHhc-cCCceEEEeC--CCCHHHHHHHHHH
Confidence 357888887777766777888899999999998887322 2333333433 5687776432 22111
Q ss_pred Cccc---eeeeEEECCCCcee
Q psy17819 212 DYIA---WGHSTVVDPWANIL 229 (272)
Q Consensus 212 ~~~~---~G~S~i~~p~G~~~ 229 (272)
.+.| .++..|+|..|.+.
T Consensus 113 ~L~~~~~~~P~~iiDDG~Dl~ 133 (268)
T PF05221_consen 113 ALSWEDDHGPNLIIDDGGDLV 133 (268)
T ss_dssp CHSESTTCE-SEEEESSSHHH
T ss_pred HhcCCCCCCcceeecchHHHH
Confidence 1111 37788997777654
No 161
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=28.75 E-value=1.3e+02 Score=23.46 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=29.6
Q ss_pred EEEEEeeccCCCHHHHHHHHHHHHHHHHHC-C-CcEEEeCCCCCCCCC
Q psy17819 15 KIALVQMTVGKDKNKNLENAVRFIRKAADN-G-ASLIVLPECFNCPYG 60 (272)
Q Consensus 15 ria~~Q~~~~~~~~~n~~~~~~~i~~A~~~-~-~dlvvfPE~~~~g~~ 60 (272)
||+++|++.+++.+.-- ++-+-|.+|++. . -++++.|--...++.
T Consensus 1 Kv~ivQ~pYlGd~~a~r-~mGerIGRaaQ~FEV~eLiiap~~~vda~e 47 (173)
T PF14419_consen 1 KVVIVQMPYLGDLKACR-KMGERIGRAAQAFEVKELIIAPKEKVDAYE 47 (173)
T ss_pred CeeEEeccccCCHHHHH-HHHHHHhHHHhhcchheEEEeccCccCHHH
Confidence 68999999998876533 333334444332 2 488999987766544
No 162
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=28.69 E-value=2.6e+02 Score=23.28 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=33.7
Q ss_pred cCCcEEEeccccCC--CCC-------chhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCcee
Q psy17819 165 KGCDLLIYPGAFNM--TTG-------PLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANIL 229 (272)
Q Consensus 165 ~ga~lil~p~~~~~--~~~-------~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~ 229 (272)
+|+|+|+.|-.+.. ... ........+..|.+++..++.... ...++ .+.-...+++|+|.+.
T Consensus 33 ~gadLivfPE~~~~Gy~~~~~~~~~~~~~~~~~l~~~A~~~~~~i~g~~~--~~~~~-~~~Nsa~vi~~~G~~~ 103 (256)
T PRK10438 33 TGRDVIVLPEMFTTGFAMEAAASSLPQDDVVAWMTAKAQQTNALIAGSVA--LQTES-GAVNRFLLVEPGGTVH 103 (256)
T ss_pred cCCCEEEeCCcccCCCcccchhhccccchHHHHHHHHHHHcCeEEEEEEE--EecCC-CeEEEEEEEcCCCCEE
Confidence 69999999975422 110 012334456678888864432211 11111 1335667889999754
No 163
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.36 E-value=1.2e+02 Score=24.92 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeecc--CCeeEEEEEEEccc
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELD--NDKVYNAATVHLFD 114 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~~--~~~~yns~~v~~~~ 114 (272)
.++.|.+.|++++|-|=+. ..+.+.|+++++.++-|.....+ ...-+-..++.+|.
T Consensus 80 ~~~~a~~aGA~FivsP~~~----------------------~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFP 137 (213)
T PRK06552 80 TARLAILAGAQFIVSPSFN----------------------RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFP 137 (213)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECC
Confidence 3456777888998877542 45677788999999999443221 00001111221121
Q ss_pred CCCCCCccccccccc-cCCCCceEEeeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCC
Q psy17819 115 IAIPGGITFKESDVL-SPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178 (272)
Q Consensus 115 ~~~p~~~~~~e~~~~-~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~ 178 (272)
-..-+ .+.-+.+ .+=+..+++-++|. .++-...+...|++.+...+++..
T Consensus 138 a~~~G---~~~ik~l~~~~p~ip~~atGGI-----------~~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 138 GSTLG---PSFIKAIKGPLPQVNVMVTGGV-----------NLDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred cccCC---HHHHHHHhhhCCCCEEEEECCC-----------CHHHHHHHHHCCCcEEEEchHHhC
Confidence 10000 0000000 11122344444443 567777778899999998877643
No 164
>smart00642 Aamy Alpha-amylase domain.
Probab=28.14 E-value=2.9e+02 Score=21.51 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCC--------CCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECF--------NCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~--------~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
++.+.+.+...++.|++.|-++=.. -.||...++....+.....+..+.|-+.|++.++.|++-.+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3334444444556799988765442 23344444333333332246677888888889999998833
No 165
>PLN00175 aminotransferase family protein; Provisional
Probab=27.92 E-value=1.7e+02 Score=26.50 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHcCcEEEEe
Q psy17819 74 GITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+.++.+.++|++++++|+.-
T Consensus 206 ~~~l~~l~~~a~~~~~~ii~D 226 (413)
T PLN00175 206 REELELIASLCKENDVLAFTD 226 (413)
T ss_pred HHHHHHHHHHHHHcCcEEEEe
Confidence 456788899999999988866
No 166
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=27.71 E-value=1.6e+02 Score=26.47 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=54.6
Q ss_pred eCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCC-------
Q psy17819 140 NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSD------- 212 (272)
Q Consensus 140 ~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~------- 212 (272)
++|.||+.++=.+.-.--+...++..||++.+.+++.- ..+...+.+.+...+++|..-- |+...+
T Consensus 43 lkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNpl-----STqD~vaaAl~~~~GipVfA~k--Ge~~eeY~~~~~~ 115 (420)
T COG0499 43 LKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPL-----STQDDVAAALAAKEGIPVFAWK--GETLEEYYEAIDQ 115 (420)
T ss_pred CCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCC-----cccHHHHHHHhhccCceEEEEc--CCCHHHHHHHHHH
Confidence 45888999998888888899999999999999888832 2234455555566677777543 321100
Q ss_pred ccceeeeEEECCCCceee
Q psy17819 213 YIAWGHSTVVDPWANILA 230 (272)
Q Consensus 213 ~~~~G~S~i~~p~G~~~~ 230 (272)
..-..+..|+|..|....
T Consensus 116 vl~~~p~iiiDDG~D~~~ 133 (420)
T COG0499 116 VLDWEPNIIIDDGGDLTK 133 (420)
T ss_pred HhCcCCCEEEecCcceee
Confidence 111246677766666543
No 167
>PRK05748 replicative DNA helicase; Provisional
Probab=27.56 E-value=1.4e+02 Score=27.35 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH-HC-CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 31 LENAVRFIRKAA-DN-GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 31 ~~~~~~~i~~A~-~~-~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
++.++..+++.+ +. ++++||.==+-+.......-......+ ....+.|+.+|+++++.|++-+-..+
T Consensus 298 i~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i--~~i~~~LK~lAke~~i~vi~lsQlnr 366 (448)
T PRK05748 298 VTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEV--SEISRSLKALAKELKVPVIALSQLSR 366 (448)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHH--HHHHHHHHHHHHHhCCeEEEecccCh
Confidence 344444444433 23 688888766554321111000111223 56789999999999999999865443
No 168
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=27.40 E-value=3.6e+02 Score=22.37 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCcEEEecccc
Q psy17819 157 ELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 157 e~~~~~~~~ga~lil~p~~~ 176 (272)
+....++.+|+++|+.|-.+
T Consensus 23 ~~i~~A~~~ga~liv~PE~~ 42 (269)
T cd07586 23 EIIETARERGADLVVFPELS 42 (269)
T ss_pred HHHHHHHHcCCCEEEecchh
Confidence 34455667899999999753
No 169
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=27.25 E-value=3.5e+02 Score=24.26 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHcCcEEEEeeeeec--cCCeeEEEEEEEcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeec
Q psy17819 74 GITSKTLSNVAKEKEIFLVGGSIPEL--DNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICY 151 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~Gs~~~~--~~~~~yns~~v~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~ 151 (272)
.+..+.|.++|++++++|+.--.+.. .++..+.+. . . +. .+...+.-++-...+..+|.|+|.+++.
T Consensus 196 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~---~--~~-----~~~~~i~~~SfSK~~~~pGlRlG~~i~~ 264 (412)
T PTZ00433 196 RKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSV-A---D--FD-----TTVPRVILGGTAKNLVVPGWRLGWLLLV 264 (412)
T ss_pred HHHHHHHHHHHHHcCCeEEEeccccccccCCCCccch-h---h--cc-----CCCceEEEccchhhcCCCCeeEEEEEEe
Confidence 45667788899999999887732211 011111110 0 0 00 0111122233344556789999999984
Q ss_pred C--CCChHHHHHHH
Q psy17819 152 D--MRFPELAQVYR 163 (272)
Q Consensus 152 D--~~~pe~~~~~~ 163 (272)
+ ...+++...+.
T Consensus 265 ~p~~~~~~~~~~~~ 278 (412)
T PTZ00433 265 DPHGNGGDFLDGMK 278 (412)
T ss_pred CCcccHHHHHHHHH
Confidence 3 33455555443
No 170
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=27.18 E-value=59 Score=24.53 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHCCCcEEEeCCCCCC
Q psy17819 30 NLENAVRFIRKAADNGASLIVLPECFNC 57 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dlvvfPE~~~~ 57 (272)
+-++++++.++|.+.+..++.||+...+
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~ 89 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQS 89 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhh
Confidence 6788889999999889999999998754
No 171
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.11 E-value=2.9e+02 Score=21.19 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=43.1
Q ss_pred ccEEEEEeeccC------CCHHHHHHHHHHHHHHHHH--CCCcEEEeCCCCCCCCCcc-hhhhhhhhcCCChHHHHHHHH
Q psy17819 13 SFKIALVQMTVG------KDKNKNLENAVRFIRKAAD--NGASLIVLPECFNCPYGTK-YFREYSEEIGSGITSKTLSNV 83 (272)
Q Consensus 13 ~iria~~Q~~~~------~~~~~n~~~~~~~i~~A~~--~~~dlvvfPE~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~ 83 (272)
+..+.+++.... .+.+...+.+.++++++.+ .++++|+..=.-.. .... ........+ ....+.++++
T Consensus 56 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~ 132 (189)
T cd01825 56 PPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPPDSL-QKTGAGRWRTPPGL--DAVIAAQRRV 132 (189)
T ss_pred CCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchh-ccCCCCCcccCCcH--HHHHHHHHHH
Confidence 356777777421 2456667777777777766 57888876421110 0000 000001111 4567888999
Q ss_pred HHHcCcEEE
Q psy17819 84 AKEKEIFLV 92 (272)
Q Consensus 84 a~~~~~~iv 92 (272)
|+++++.++
T Consensus 133 a~~~~v~~v 141 (189)
T cd01825 133 AKEEGIAFW 141 (189)
T ss_pred HHHcCCeEE
Confidence 999987654
No 172
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.05 E-value=2.9e+02 Score=21.14 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=41.9
Q ss_pred cEEEEEeecc---C-C-----CHHHHHHHHHHHHHHH--HHCCCcEEEeCCCCCCCCCc--chhhhhhhhcCCChHHHHH
Q psy17819 14 FKIALVQMTV---G-K-----DKNKNLENAVRFIRKA--ADNGASLIVLPECFNCPYGT--KYFREYSEEIGSGITSKTL 80 (272)
Q Consensus 14 iria~~Q~~~---~-~-----~~~~n~~~~~~~i~~A--~~~~~dlvvfPE~~~~g~~~--~~~~~~~~~~~~~~~~~~l 80 (272)
.++.+++... . . +.+...+.+.++++.+ ...++.+|+..=........ .........+ ..+.+.+
T Consensus 62 ~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~--~~~n~~l 139 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANL--AAYADAV 139 (191)
T ss_pred CCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHH--HHHHHHH
Confidence 4677777742 1 1 4555666777777766 34577877753211111000 0011111222 4567888
Q ss_pred HHHHHHcCcEEE
Q psy17819 81 SNVAKEKEIFLV 92 (272)
Q Consensus 81 ~~~a~~~~~~iv 92 (272)
+++|+++++.++
T Consensus 140 ~~~a~~~~~~~i 151 (191)
T cd01834 140 RELAAENGVAFV 151 (191)
T ss_pred HHHHHHcCCeEE
Confidence 999999887655
No 173
>KOG3325|consensus
Probab=26.74 E-value=1.6e+02 Score=22.83 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.5
Q ss_pred ceEEeeCCceEEEEeecC---CCChHHHHHHHHc-CCcEEEe
Q psy17819 135 FSMFNNGICNIGLGICYD---MRFPELAQVYRKK-GCDLLIY 172 (272)
Q Consensus 135 ~~v~~~~~~~igv~IC~D---~~~pe~~~~~~~~-ga~lil~ 172 (272)
..++..+-+|||.+.++- +..|+....+++| ++|+++.
T Consensus 72 ~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldvDILl~ 113 (183)
T KOG3325|consen 72 NKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDVDILLT 113 (183)
T ss_pred cceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCCcEEEe
Confidence 357788888999988887 4457777666644 9999993
No 174
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=26.65 E-value=80 Score=26.42 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHcCcEEEEeeeeecc
Q psy17819 74 GITSKTLSNVAKEKEIFLVGGSIPELD 100 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~Gs~~~~~ 100 (272)
..+.+.|+.+|+++++.|++-+-..++
T Consensus 156 ~~i~~~Lk~lA~~~~i~vi~~sQlnr~ 182 (259)
T PF03796_consen 156 GEISRELKALAKELNIPVIALSQLNRE 182 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEBSGG
T ss_pred HHHHHHHHHHHHHcCCeEEEccccChh
Confidence 467889999999999999999665453
No 175
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.56 E-value=1.4e+02 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 38 IRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 38 i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
.+.|.+.|++++|-|=+. ..+.+.|+++++.++-|.+
T Consensus 84 a~~a~~aGA~FiVsP~~~----------------------~~v~~~~~~~~i~~iPG~~ 120 (222)
T PRK07114 84 AALYIQLGANFIVTPLFN----------------------PDIAKVCNRRKVPYSPGCG 120 (222)
T ss_pred HHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEeCCCC
Confidence 356677788888888542 4577888999999999944
No 176
>KOG3406|consensus
Probab=26.12 E-value=2.2e+02 Score=21.27 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.2
Q ss_pred HCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 43 DNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 43 ~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
+.++.|.|+-|.+.- ..+....+.++++++|.++
T Consensus 48 krqA~lcvLaencde----------------p~yvKLVeALcaeh~ipli 81 (134)
T KOG3406|consen 48 KRQAHLCVLAENCDE----------------PMYVKLVEALCAEHQIPLI 81 (134)
T ss_pred hCceeEEEEeccCCc----------------hHHHHHHHHHHhhcCCCeE
Confidence 458999999998732 4567888999999988865
No 177
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=25.96 E-value=1.8e+02 Score=27.57 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 34 AVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 34 ~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
.+-.+..|...+|+++++=|=... + ...+. ...++.|+++.+++++.+++=|+
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTa------L---Dvt~q-~qIL~llk~l~~e~g~a~l~ITH 213 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTA------L---DVTTQ-AQILDLLKDLQRELGMAVLFITH 213 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccc------c---CHHHH-HHHHHHHHHHHHHcCcEEEEEcC
Confidence 344556677788999998885432 1 12233 67899999999999999888755
No 178
>PRK06348 aspartate aminotransferase; Provisional
Probab=25.94 E-value=2e+02 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHcCcEEEEe
Q psy17819 74 GITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~G 94 (272)
.+..+.|.++|+++++.|+.-
T Consensus 181 ~~~~~~l~~~a~~~~~~ii~D 201 (384)
T PRK06348 181 KETLEEIAKIAIEYDLFIISD 201 (384)
T ss_pred HHHHHHHHHHHHHCCeEEEEe
Confidence 456788889999999988876
No 179
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.78 E-value=2.4e+02 Score=26.57 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=40.9
Q ss_pred CceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEc
Q psy17819 142 ICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACS 204 (272)
Q Consensus 142 ~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n 204 (272)
-.++|.+|+......|-...+...|+|+|++-+.-++ ....|....+.++.--+..++..|
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~--~~~~~~~i~~ik~~~p~~~vi~g~ 296 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD--SIYQLEMIKYIKKTYPELDVIGGN 296 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC--cHHHHHHHHHHHHhCCCCcEEEec
Confidence 3568999987655678888899999999998665332 345566666666544445555433
No 180
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=25.57 E-value=1.6e+02 Score=23.01 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=29.7
Q ss_pred HHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 38 IRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 38 i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+.++.++|-.+++|||..-.. . ..+..-...+|.+.++.|+.-
T Consensus 90 ~~~~lk~g~~v~ifpeG~r~~-------------~-~~~~~G~~~lA~~~~~pIvPv 132 (189)
T cd07983 90 MLRALKDGYNIAITPDGPRGP-------------R-YKVKPGVILLARKSGAPIVPV 132 (189)
T ss_pred HHHHHhCCCEEEEcCCCCCCc-------------c-eecchHHHHHHHHhCCCEEEE
Confidence 344556788999999975310 1 234566788999999997765
No 181
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.34 E-value=1.8e+02 Score=24.80 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCcEE-Ee-CCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeee
Q psy17819 30 NLENAVRFIRKAADNGASLI-VL-PECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIP 97 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dlv-vf-PE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~ 97 (272)
+++...++.+.|.+.|+|-+ +. |-+... .+ ....+.++++|...++.+++=..|
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~-------------s~-~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKP-------------SQ-EELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSC-------------CH-HHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccc-------------hh-hHHHHHHHHHHhhcCCCEEEEECC
Confidence 46666777788888899953 44 533211 11 456788888888778887764333
No 182
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=25.22 E-value=3.1e+02 Score=24.56 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred cCCCChHHHHHHHH---cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCc
Q psy17819 151 YDMRFPELAQVYRK---KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWAN 227 (272)
Q Consensus 151 ~D~~~pe~~~~~~~---~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (272)
-|..+.++-+.... .++|+++-.-. | .-.+.++..|.+.+++++.+-+.-+ -++....+.|.++++.|+
T Consensus 66 ~~a~~~ev~~~~~~~~~~~~d~vIGVGG-----G--k~iD~aK~~A~~~~~pfIsvPT~AS-~Da~~Sp~aSv~~~~~g~ 137 (360)
T COG0371 66 GEASEEEVERLAAEAGEDGADVVIGVGG-----G--KTIDTAKAAAYRLGLPFISVPTIAS-TDAITSPVASVIYNGKGD 137 (360)
T ss_pred CccCHHHHHHHHHHhcccCCCEEEEecC-----c--HHHHHHHHHHHHcCCCEEEecCccc-cccccCCceeeEEcCCCc
Confidence 34445555444332 56888885443 2 2567889999999999998766554 334444568999999993
Q ss_pred eeeeCCCCceEEEEEech
Q psy17819 228 ILATSQFEETIVYADIDL 245 (272)
Q Consensus 228 ~~~~~~~~~~~~~~~id~ 245 (272)
........+..+++|.+.
T Consensus 138 ~~~~~~~~P~~vivD~ev 155 (360)
T COG0371 138 KYSFLAKAPDAVIVDTEV 155 (360)
T ss_pred eeeeecCCCcEEEEcHHH
Confidence 333334567777777664
No 183
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.21 E-value=2.1e+02 Score=20.69 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 30 NLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.-++..++++++.+.|+.-++|--. ...+.+.+.|+++++.++.+
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g--------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG--------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT--------------------S--HHHHHHHHHTT-EEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc--------------------hHHHHHHHHHHHcCCEEEeC
Confidence 4567777888888778776655432 34577889999999987644
No 184
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.07 E-value=1.8e+02 Score=24.81 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHCCCcEEE-eCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeee
Q psy17819 29 KNLENAVRFIRKAADNGASLIV-LPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIP 97 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~dlvv-fPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~ 97 (272)
.+++...++.+.|.+.|+|-++ .|=+... ..+ ....+.+++++...++.+++=..|
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~------------~~~-~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNK------------PTQ-EGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCC------------CCH-HHHHHHHHHHHhcCCCCEEEEECc
Confidence 4677777888888888998544 3443211 011 456778888888777776655344
No 185
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=24.99 E-value=2.6e+02 Score=22.96 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
..+.++++++...++++||+=.+.-. +...... .... ....+.|.++++++++.+++=.+..+
T Consensus 98 ~~~~~l~~~~~~~~~~lvviDpl~~~-~~~~~~d--~~~~--~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 98 PEFERIIEQLLIRRIDLVVIDPLVSF-HGVSEND--NGAM--DAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEECChHHh-CCCCcCC--HHHH--HHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 34445555555678999999844321 1100000 0111 34677888999998888877745444
No 186
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.24 E-value=1.2e+02 Score=22.72 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCcEEEeCCCC
Q psy17819 36 RFIRKAADNGASLIVLPECF 55 (272)
Q Consensus 36 ~~i~~A~~~~~dlvvfPE~~ 55 (272)
+.++.|.+.++|+|++--+.
T Consensus 44 ~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHcCCCEEEEcCch
Confidence 46777888899999985543
No 187
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=24.13 E-value=36 Score=18.92 Aligned_cols=10 Identities=50% Similarity=1.258 Sum_probs=7.9
Q ss_pred EeecCCCChH
Q psy17819 148 GICYDMRFPE 157 (272)
Q Consensus 148 ~IC~D~~~pe 157 (272)
-+|||..||.
T Consensus 21 nvCyD~~fPi 30 (34)
T smart00037 21 NVCYDQAFPI 30 (34)
T ss_pred ceeccccccC
Confidence 4799998883
No 188
>PRK09989 hypothetical protein; Provisional
Probab=24.06 E-value=4.2e+02 Score=21.96 Aligned_cols=61 Identities=5% Similarity=-0.056 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcEE-EeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEE
Q psy17819 28 NKNLENAVRFIRKAADNGASLI-VLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93 (272)
Q Consensus 28 ~~n~~~~~~~i~~A~~~~~dlv-vfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (272)
+...+.+.+.++.|.+-|+..| ++|-....+...+... ... .+.++.+.+.|+++++.+.+
T Consensus 81 ~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~---~~~--~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 81 HEARADIDLALEYALALNCEQVHVMAGVVPAGEDAERYR---AVF--IDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHH---HHH--HHHHHHHHHHHHhcCCEEEE
Confidence 4556778888888889899866 4454322221111111 111 34567777788888887654
No 189
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=23.94 E-value=3.5e+02 Score=22.38 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEee
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGS 95 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs 95 (272)
...+.++..++++.|.+++|.=-.++. . .+..+.+.++|++++..+.+++
T Consensus 47 ~~~H~e~a~~aL~aGkhVl~~s~gAla--------------d-~e~~~~l~~aA~~~g~~l~i~s 96 (229)
T TIGR03855 47 QEAVKEYAEKILKNGKDLLIMSVGALA--------------D-RELRERLREVARSSGRKVYIPS 96 (229)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCcccC--------------C-HHHHHHHHHHHHhcCCEEEECh
Confidence 345667888888999999992111110 1 3567889999999988888884
No 190
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=23.71 E-value=1.3e+02 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCC
Q psy17819 24 GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCP 58 (272)
Q Consensus 24 ~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g 58 (272)
++.-..-.+.+..++.+|.++++++.||-|.+.+|
T Consensus 114 ~G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 114 PGPDNDLNDDLEPYLQRAISDDATIYVFGEPFRPG 148 (206)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCEEEEECceecCC
Confidence 34445567777889999999999999999998766
No 191
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.69 E-value=2.5e+02 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred EEEEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 145 igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
+=+++++-+..++..+.+.. .||-+++-|++
T Consensus 201 ~pv~vGfGI~~~e~v~~~~~-~ADGviVGSai 231 (258)
T PRK13111 201 LPVAVGFGISTPEQAAAIAA-VADGVIVGSAL 231 (258)
T ss_pred CcEEEEcccCCHHHHHHHHH-hCCEEEEcHHH
Confidence 33456777889999988775 59999988774
No 192
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.43 E-value=2.8e+02 Score=24.72 Aligned_cols=64 Identities=19% Similarity=0.071 Sum_probs=39.3
Q ss_pred CCceEEEEeecCCCChHHH--------HHHHHcCCcEEEeccccCCCCCchhH-HHHHHHHhhhCceEEEEEcC
Q psy17819 141 GICNIGLGICYDMRFPELA--------QVYRKKGCDLLIYPGAFNMTTGPLHW-ELLVRSRANDNQVYVAACSP 205 (272)
Q Consensus 141 ~~~~igv~IC~D~~~pe~~--------~~~~~~ga~lil~p~~~~~~~~~~~~-~~~~~~ra~en~~~vv~~n~ 205 (272)
++--++.+||-|..|-|.. ..+.+.++|+++.-.+|... ++-.. -.++.+..-+.+++++.+..
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnag-rYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAG-RYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCc-hHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 3455899999998885322 22345689999986665432 11111 23445556678888886543
No 193
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=23.38 E-value=1.5e+02 Score=24.62 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=27.2
Q ss_pred HHHHHHHCC-CcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 37 FIRKAADNG-ASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 37 ~i~~A~~~~-~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
..+.|.+++ +|+|.+||..-.. ...-..+.++|++.++.+-+.
T Consensus 89 v~R~Av~~~rVDil~~p~~~r~~---------------~gldh~~a~laa~~~valeis 132 (229)
T COG1603 89 VNRAAVENKRVDILSHPETGRKD---------------PGLDHVLARLAAEKGVALEIS 132 (229)
T ss_pred HHHHHHhccCccEEEcccccCCC---------------ccccHHHHHHHHhcCceEEEe
Confidence 445677665 9999999976321 122245677777776664444
No 194
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=23.33 E-value=2e+02 Score=24.04 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHH-HCCCcEEEeCCCCCCCCCc-chhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 30 NLENAVRFIRKAA-DNGASLIVLPECFNCPYGT-KYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 30 n~~~~~~~i~~A~-~~~~dlvvfPE~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
+++++.+.++.++ +.++++||+=.....-... .... ....+ ......|+.+|+++++++++-+...+
T Consensus 124 ~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~-~~~~~--~~~~~~L~~la~~~~vtvll~sq~~~ 192 (271)
T cd01122 124 SMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGD-ERKAL--DEIMTKLRGFATEHGIHITLVSHLRR 192 (271)
T ss_pred CHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchh-HHHHH--HHHHHHHHHHHHHhCCEEEEEecccC
Confidence 3455555555443 4589988886643210000 0000 00111 35667799999999999888865544
No 195
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.15 E-value=5.3e+02 Score=22.84 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEeCCCC----CCC------CC------cchhhhhh--hhcCCChHHHHHHHHHHHc
Q psy17819 26 DKNKNLENAVRFIRKAADNGASLIVLPECF----NCP------YG------TKYFREYS--EEIGSGITSKTLSNVAKEK 87 (272)
Q Consensus 26 ~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~----~~g------~~------~~~~~~~~--~~~~~~~~~~~l~~~a~~~ 87 (272)
+=...+++..++++.|++.|||.|=|.-.. ++. |. ...+.+.. ..++ -++...|.+.|++.
T Consensus 24 NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p-~e~~~~Lke~a~~~ 102 (347)
T COG2089 24 NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETP-LEWHAQLKEYARKR 102 (347)
T ss_pred cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCC-HHHHHHHHHHHHHc
Confidence 334558889999999999999999877622 221 10 01122222 2345 68999999999998
Q ss_pred CcEEEE
Q psy17819 88 EIFLVG 93 (272)
Q Consensus 88 ~~~iv~ 93 (272)
|+.+..
T Consensus 103 Gi~~~S 108 (347)
T COG2089 103 GIIFFS 108 (347)
T ss_pred CeEEEe
Confidence 875433
No 196
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=22.97 E-value=1.2e+02 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=20.7
Q ss_pred hhhcCCChHHHHHHHHHHHcCcEEEEeeeee
Q psy17819 68 SEEIGSGITSKTLSNVAKEKEIFLVGGSIPE 98 (272)
Q Consensus 68 ~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~ 98 (272)
.+.++ ....+...+.+++.++.+|+|+...
T Consensus 182 GE~lp-~~~~~~a~~~~~~aDlllviGTSl~ 211 (271)
T PTZ00409 182 GEVIP-KSLLKQAEKEIDKCDLLLVVGTSSS 211 (271)
T ss_pred CCcCC-HHHHHHHHHHHHcCCEEEEECCCCc
Confidence 34454 4455666777788899999996543
No 197
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=22.86 E-value=1.8e+02 Score=26.52 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHH-HCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 31 LENAVRFIRKAA-DNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 31 ~~~~~~~i~~A~-~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
++.++..+++.. +.++++||.==+-+-..... .......+ ..+.+.|+.+|++++++|++-+...+
T Consensus 290 ~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~-~~~r~~~i--~~i~~~Lk~lA~e~~i~vi~lsqlnr 356 (434)
T TIGR00665 290 ITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-SENRQQEV--SEISRSLKALAKELNVPVIALSQLSR 356 (434)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC-CCCHHHHH--HHHHHHHHHHHHHhCCeEEEEeccCc
Confidence 444554444433 35789888765433211100 00011223 45678899999999999998865333
No 198
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.79 E-value=1.9e+02 Score=24.41 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHCCCcE-EEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 30 NLENAVRFIRKAADNGASL-IVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 30 n~~~~~~~i~~A~~~~~dl-vvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
+++...++.+.|.+.|+|- ++.|=+... .-+ ....+.+..++...++.+++=
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~------------~~~-~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNK------------PSQ-EGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCC------------CCH-HHHHHHHHHHHhcCCCCEEEE
Confidence 4556777888888889985 444443221 111 456777888888776666543
No 199
>PLN02591 tryptophan synthase
Probab=22.73 E-value=2.9e+02 Score=23.26 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=27.9
Q ss_pred eEEEEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 144 NIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 144 ~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
.+=+++++-+..+|..+.+...|||-+++-|+.
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 345667888999999999988899999998875
No 200
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=22.62 E-value=2.3e+02 Score=26.76 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=39.9
Q ss_pred EEEEeecCCCCh--HHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEc
Q psy17819 145 IGLGICYDMRFP--ELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACS 204 (272)
Q Consensus 145 igv~IC~D~~~p--e~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n 204 (272)
=|...+.|.+|| +....+++.|+..|+.|..+ . -+..+...|-++++.+++++
T Consensus 453 ~gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGS-----i--rD~evI~aAne~gIamvfTg 507 (513)
T PRK00881 453 KGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGS-----I--RDEEVIAAADEHGIAMVFTG 507 (513)
T ss_pred CCeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCC-----C--ChHHHHHHHHHcCCEEEECC
Confidence 356777998886 66788899999999999883 1 12344567888899888775
No 201
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.54 E-value=4.8e+02 Score=23.21 Aligned_cols=64 Identities=17% Similarity=0.051 Sum_probs=44.6
Q ss_pred ceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 143 CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 143 ~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
.++.++-++=...++..+.+...|++=|+.-.. +.......+.... .++.+++++|+.++.+..
T Consensus 233 ~~V~il~~~pG~~~~~l~~~l~~~~~GiVl~g~-G~Gn~~~~~~~~l-~~a~~~GipVV~~Sqc~~ 296 (347)
T PRK11096 233 PKVGIVYNYANASDLPAKALVDAGYDGIVSAGV-GNGNLYKTVFDTL-ATAAKNGVAVVRSSRVPT 296 (347)
T ss_pred CeEEEEEeCCCCCHHHHHHHHhccCCEEEEEeE-CCCCCCHHHHHHH-HHHHHCCCEEEEeCCCCC
Confidence 478888888888899998887778877664332 2211223344333 578899999999998864
No 202
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=22.46 E-value=1.7e+02 Score=26.08 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEee
Q psy17819 34 AVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGS 95 (272)
Q Consensus 34 ~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs 95 (272)
+.+-++..++.|.++|-+.+++=. ..+..+...+-..++.+.+.++++|+.|+++.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~ 67 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWS------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGT 67 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHH------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEechh------hccCCCCeeecHHHHHHHHHHHhccCeEEEEe
Confidence 334444444559999998887511 11112222225678889999999999999983
No 203
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.29 E-value=2.6e+02 Score=23.83 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 145 igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
+=++.++-+..|+..+....- ||=+++-|+.
T Consensus 206 ~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 206 VPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred CCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 446667778899999988877 9999887774
No 204
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.89 E-value=2.9e+02 Score=22.94 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=23.3
Q ss_pred EEEEeecCCCChHHHHHHHHcCCcEEEecccc
Q psy17819 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176 (272)
Q Consensus 145 igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~ 176 (272)
+=+.+..-+..++..+.+... ||.+++-|+.
T Consensus 188 ~pI~vggGI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 188 LPIAVGFGISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred CcEEEEccCCCHHHHHHHHcc-CCEEEECHHH
Confidence 445556668888888888777 9999887764
No 205
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.85 E-value=2.6e+02 Score=21.87 Aligned_cols=145 Identities=21% Similarity=0.163 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeeccCCeeEEEEEEE
Q psy17819 32 ENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVH 111 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~~~~~~yns~~v~ 111 (272)
+...+.++++.+.|+++|.+-+--.+ .... ....+.+.+++++++..+++...++-.. -++..-+|
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~----------~~~~--~~~a~~l~~~~~~~~~~liin~~~~la~--~~~~dGvH 77 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLS----------DEEL--LELARRLAELCQKYGVPLIINDRVDLAL--ELGADGVH 77 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-----------HHHH--HHHHHHHHHHHHHTTGCEEEES-HHHHH--HCT-SEEE
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCC----------ccHH--HHHHHHHHHHhhcceEEEEecCCHHHHH--hcCCCEEE
Confidence 44567777888889999999986533 1111 3456778889999988888884433211 12222344
Q ss_pred cccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCC----chhHHH
Q psy17819 112 LFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTG----PLHWEL 187 (272)
Q Consensus 112 ~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~----~~~~~~ 187 (272)
+...+++ ..+.+.. --+...+|+ -.+..+-.+.+...|+|.++...-++.... ..-|..
T Consensus 78 l~~~~~~----~~~~r~~---------~~~~~~ig~----S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~ 140 (180)
T PF02581_consen 78 LGQSDLP----PAEARKL---------LGPDKIIGA----SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDG 140 (180)
T ss_dssp EBTTSSS----HHHHHHH---------HTTTSEEEE----EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHH
T ss_pred ecccccc----hHHhhhh---------cccceEEEe----ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHH
Confidence 4332211 0111100 011223442 244566677777899999987554433211 122333
Q ss_pred HHHHHhhhCceEEEEEcCCcC
Q psy17819 188 LVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 188 ~~~~ra~en~~~vv~~n~~g~ 208 (272)
+. ........+++.-++...
T Consensus 141 l~-~~~~~~~~pv~AlGGI~~ 160 (180)
T PF02581_consen 141 LR-EIARASPIPVYALGGITP 160 (180)
T ss_dssp HH-HHHHHTSSCEEEESS--T
T ss_pred HH-HHHHhCCCCEEEEcCCCH
Confidence 32 333444478887765543
No 206
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=21.76 E-value=4.5e+02 Score=22.83 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=40.1
Q ss_pred CceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 142 ICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 142 ~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
..++.++-|+=...+++.+.+. .+++-++.-..-.-. ....+.. .-.++.+.+++|+.++.+..
T Consensus 201 ~~~V~il~~~pG~~~~~l~~~~-~~~~GlVl~~~G~Gn-~~~~~~~-~l~~a~~~gipVV~~sr~~~ 264 (313)
T PF00710_consen 201 LPRVAILYLYPGMDAELLDAAL-AGAKGLVLEGYGAGN-VPPALLE-ALARAVERGIPVVVTSRCPS 264 (313)
T ss_dssp -S-EEEEE--TT--THHHHHHH-TT-SEEEEEEBTTTB-SSHHHHH-HHHHHHHTTSEEEEEESSSC
T ss_pred CCCEEEEEECCCCCHHHHHHHh-ccCCEEEEeccCCCC-CCHHHHH-HHHHHHhcCceEEEeccccc
Confidence 4579999999888899998888 889988765542111 2233333 33667788999999998754
No 207
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.71 E-value=3e+02 Score=22.39 Aligned_cols=44 Identities=27% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCCcE-EEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 32 ENAVRFIRKAADNGASL-IVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 32 ~~~~~~i~~A~~~~~dl-vvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
++..+.++.+.+.++|- |+.|=.. ....+.+++ +++.++.++.=
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~~~------------------~~~~~~l~~-~~~~gIpvv~~ 86 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPVDP------------------DSLAPFLEK-AKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESSST------------------TTTHHHHHH-HHHTTSEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCH------------------HHHHHHHHH-HhhcCceEEEE
Confidence 34445566666667774 3344322 223344444 66678987774
No 208
>KOG0259|consensus
Probab=21.65 E-value=1.4e+02 Score=27.05 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHcCcEEEEeeeeeccCCeeEEEEEEEcccCCCCCCccccccccccCCCCceEEeeCCceEEEEeecCC
Q psy17819 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDM 153 (272)
Q Consensus 74 ~~~~~~l~~~a~~~~~~iv~Gs~~~~~~~~~yns~~v~~~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~~igv~IC~D~ 153 (272)
..-++.+..+|+++++.||+- |..+.-+|+..-. .|-...-..--.++-|.-..-+-++|+|+|=++-.|-
T Consensus 218 ~~HL~kiae~A~klgi~vIaD---EVY~~~vfg~~pf------vpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~ 288 (447)
T KOG0259|consen 218 EDHLKKIAETAKKLGIMVIAD---EVYGHTVFGDKPF------VPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDP 288 (447)
T ss_pred HHHHHHHHHHHHHhCCeEEeh---hhcceeecCCCCc------cchhhccccCceEeecccccccccCCceeeeEEEecc
Confidence 345666677777888877766 4433333333222 1100000111123334444455677888888888873
Q ss_pred C
Q psy17819 154 R 154 (272)
Q Consensus 154 ~ 154 (272)
.
T Consensus 289 ~ 289 (447)
T KOG0259|consen 289 R 289 (447)
T ss_pred c
Confidence 3
No 209
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=21.63 E-value=3.4e+02 Score=25.33 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred HcCCcEEEeccccCC-C--CCchhHHHHHHHHhhhCceEEEEEcCCcCCC-CCccceeeeEEECCCCcee
Q psy17819 164 KKGCDLLIYPGAFNM-T--TGPLHWELLVRSRANDNQVYVAACSPAQDKN-SDYIAWGHSTVVDPWANIL 229 (272)
Q Consensus 164 ~~ga~lil~p~~~~~-~--~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~-~~~~~~G~S~i~~p~G~~~ 229 (272)
++|+|+++.|-...+ . .....+....+..+.+++++++.....-... ++..+.-...+++| |+++
T Consensus 255 ~~~~dlvV~PE~a~p~~~~~~~~~~~~~l~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~ 323 (505)
T PRK00302 255 LGPADLIIWPETAIPFLLEDLPQAFLKALDDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGIL 323 (505)
T ss_pred cCCCCEEEeCCcccccccccccHHHHHHHHHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCc
Confidence 458999999976432 1 1112233344566778999888654321111 11124455667778 6554
No 210
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.61 E-value=4e+02 Score=22.95 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHCCCcEEEeCCCCCCCC--CcchhhhhhhhcCCChHHHHHHHHHHHcCcE
Q psy17819 38 IRKAADNGASLIVLPECFNCPY--GTKYFREYSEEIGSGITSKTLSNVAKEKEIF 90 (272)
Q Consensus 38 i~~A~~~~~dlvvfPE~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 90 (272)
++...+.|+|+|.+.|-..++. +++.+.++.. +..+.+-+..++.+..
T Consensus 174 ~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~-----p~~k~i~~~i~~~g~~ 223 (330)
T cd03465 174 ADALIEAGADGIYISDPWASSSILSPEDFKEFSL-----PYLKKVFDAIKALGGP 223 (330)
T ss_pred HHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhh-----HHHHHHHHHHHHcCCc
Confidence 3334456999999999765543 4444444433 3334444444444443
No 211
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.61 E-value=2e+02 Score=25.26 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.0
Q ss_pred HHHCCCcEEEeCCCC
Q psy17819 41 AADNGASLIVLPECF 55 (272)
Q Consensus 41 A~~~~~dlvvfPE~~ 55 (272)
|.+.+||++++||.-
T Consensus 182 ala~~a~~iliPE~~ 196 (324)
T TIGR02483 182 GIAGGADVILIPEIP 196 (324)
T ss_pred HhccCCCEEEecCCC
Confidence 455689999999974
No 212
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=21.56 E-value=2e+02 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeee
Q psy17819 45 GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSI 96 (272)
Q Consensus 45 ~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~ 96 (272)
+.-+++|||..-. . ........++|++.++.++-...
T Consensus 172 ~~~LvIFPEGTR~-------------t--~~~~~~s~~~A~k~glPil~~vL 208 (374)
T PLN02510 172 PLWLALFPEGTDY-------------T--EAKCQRSQKFAAEHGLPILNNVL 208 (374)
T ss_pred CcEEEEeCCcCCC-------------C--ccccchHHHHHHHcCCCcceeEE
Confidence 3569999998632 1 22234456888888888776633
No 213
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.53 E-value=2.8e+02 Score=22.11 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 37 FIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 37 ~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
.++++.+.|+|+++++-.+. ......+.+.++++++.++++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHHcCCEEEEE
Confidence 46777888999999885431 223456777788899888876
No 214
>KOG1505|consensus
Probab=21.49 E-value=1.4e+02 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEeCCCC-CCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEE
Q psy17819 29 KNLENAVRFIRKAADNGASLIVLPECF-NCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLV 92 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~dlvvfPE~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (272)
+.+.+..+..+.+ ...-.+++|||.. .+ ....+.-++.|++.|....
T Consensus 136 ~~l~~~~k~l~~~-~~~~wLlLFPEGT~~~----------------~~~~~~S~~fa~k~GLp~l 183 (346)
T KOG1505|consen 136 KTLISLLKHLKDS-PDPYWLLLFPEGTRFT----------------EKKHERSQEFAAKNGLPHL 183 (346)
T ss_pred HHHHHHHHHhccC-CCceEEEEecCCCccc----------------HHHHHHHHHHHHHcCCCCc
Confidence 4555555555543 3346899999987 33 3344555666777666543
No 215
>PRK07004 replicative DNA helicase; Provisional
Probab=21.43 E-value=2e+02 Score=26.59 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHH-C-CCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEeeeeec
Q psy17819 31 LENAVRFIRKAAD-N-GASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL 99 (272)
Q Consensus 31 ~~~~~~~i~~A~~-~-~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~Gs~~~~ 99 (272)
+..++..+++.+. . ++++||.-=+-+..-... -......+ ....+.|+.+|+++++.|++-+-..+
T Consensus 308 ~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~-~~~r~~ei--~~Isr~LK~lAkel~ipVi~lsQLnR 375 (460)
T PRK07004 308 PMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQ-GENRATEI--SEISRSLKSLAKELDVPVIALSQLNR 375 (460)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCC-CCcHHHHH--HHHHHHHHHHHHHhCCeEEEEeccCh
Confidence 3444444443332 2 489988877655421110 01112234 67889999999999999998865433
No 216
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=21.16 E-value=4.5e+02 Score=22.14 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=40.5
Q ss_pred ccEEEEEeeccC-----CC---HHH----HHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHH
Q psy17819 13 SFKIALVQMTVG-----KD---KNK----NLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTL 80 (272)
Q Consensus 13 ~iria~~Q~~~~-----~~---~~~----n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l 80 (272)
..||++++.+.. .+ ++. --+.+.+.+++-++.|+|+|+. +-.+....-..+.+.....-..--...|
T Consensus 86 n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~-~k~I~~~a~~~l~k~gI~~v~~v~~~dl 164 (261)
T cd03334 86 NPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV-EKSVSRIAQDLLLEAGITLVLNVKPSVL 164 (261)
T ss_pred CCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-CCccCHHHHHHHHHCCCEEEEecCHHHH
Confidence 468999998742 11 121 2333344555556779998764 5554322222222211111102234566
Q ss_pred HHHHHHcCcEEEEe
Q psy17819 81 SNVAKEKEIFLVGG 94 (272)
Q Consensus 81 ~~~a~~~~~~iv~G 94 (272)
+++|+..|..++.-
T Consensus 165 ~rIa~~tGa~ii~~ 178 (261)
T cd03334 165 ERISRCTGADIISS 178 (261)
T ss_pred HHHHHHhCCEEecC
Confidence 77777766665544
No 217
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=21.12 E-value=3.4e+02 Score=19.85 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=43.5
Q ss_pred ccEEEEEeec-c-CCCHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHc-Cc
Q psy17819 13 SFKIALVQMT-V-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEK-EI 89 (272)
Q Consensus 13 ~iria~~Q~~-~-~~~~~~n~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~ 89 (272)
..+|+.+... . ..+ .+...+++..|-.++++.|++|+-.++ +++..... +-.=+.|+++..-. ++
T Consensus 5 ~~~v~~~~s~~~~i~~----~qdalDLi~~~~~~~~~~i~l~~~~l~----~dFF~L~T----glAGeiLQKf~NY~ikl 72 (113)
T PF13788_consen 5 GIRVAEVSSDEPLISD----EQDALDLIGTAYEHGADRIILPKEALS----EDFFDLRT----GLAGEILQKFVNYRIKL 72 (113)
T ss_pred CeEEEEEeCCCCeecc----hhHHHHHHHHHHHcCCCEEEEEhHHCC----HHHHHhhc----chHHHHHHHHHhhceeE
Confidence 4677777765 2 234 445556777778889999999999987 34433333 33345667777654 55
Q ss_pred EEE
Q psy17819 90 FLV 92 (272)
Q Consensus 90 ~iv 92 (272)
.||
T Consensus 73 Aiv 75 (113)
T PF13788_consen 73 AIV 75 (113)
T ss_pred EEE
Confidence 544
No 218
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=20.62 E-value=4.2e+02 Score=20.73 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEeCCCCCCCCC-cchhhhhhhhcCCChHHHHHHHHHHHcC-cEEE
Q psy17819 30 NLENAVRFIRKAADN--GASLIVLPECFNCPYG-TKYFREYSEEIGSGITSKTLSNVAKEKE-IFLV 92 (272)
Q Consensus 30 n~~~~~~~i~~A~~~--~~dlvvfPE~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~iv 92 (272)
..+++.++++++.+. ++.+++.+ ...+... ..........+ ..+.+.++++|++++ +.++
T Consensus 104 ~~~~l~~~i~~ir~~~p~~~Ivv~~-~~~p~~~~~~~~~~~~~~~--~~~n~~~~~~a~~~~~v~~v 167 (204)
T cd04506 104 YQNNLKKIFKEIRKLNPDAPIFLVG-LYNPFYVYFPNITEINDIV--NDWNEASQKLASQYKNAYFV 167 (204)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEe-cCCccccccchHHHHHHHH--HHHHHHHHHHHHhCCCeEEE
Confidence 345556666666654 46677664 2111101 01111111222 456677888888876 5544
No 219
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=20.61 E-value=4.6e+02 Score=22.22 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEeCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHcCcEEEEe
Q psy17819 31 LENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGG 94 (272)
Q Consensus 31 ~~~~~~~i~~A~~~~~dlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 94 (272)
...+.+.++.|.++++|+|...=...... .... ....+.+.+++++.++.+|+.
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~g~~~~~---------~~~~-~~~~~ai~~a~~~~GvlvVaA 129 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDIGYLNEP---------FFQD-GPIAQAVDEVVASPGVLYFSS 129 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCCC---------cccC-CHHHHHHHHHHHcCCcEEEEe
Confidence 45677888888899999998754332110 0011 345667777776668888777
No 220
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=20.54 E-value=1e+02 Score=22.30 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCcEEEeCCCC
Q psy17819 36 RFIRKAADNGASLIVLPECF 55 (272)
Q Consensus 36 ~~i~~A~~~~~dlvvfPE~~ 55 (272)
++.+-|.+.|..++||||.-
T Consensus 10 e~~KlA~K~gk~livlpdl~ 29 (106)
T PF09895_consen 10 EAFKLALKLGKSLIVLPDLK 29 (106)
T ss_pred HHHHHHHHcCCcEEEeCCHH
Confidence 45566778899999999963
No 221
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.50 E-value=6e+02 Score=22.61 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=45.1
Q ss_pred ceEEEEeecCCCChHHHHHHHHcCCcEEEeccc-cCCCCCchhHHHHHHHHhhhCceEEEEEcCCcC
Q psy17819 143 CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA-FNMTTGPLHWELLVRSRANDNQVYVAACSPAQD 208 (272)
Q Consensus 143 ~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~-~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~ 208 (272)
.++.++-++=...+++.+.+...|++=|++-.. .+.. +..|... -.++.+.+++||.++.++.
T Consensus 239 p~V~il~~~pG~~~~ll~~~~~~g~~GlVl~g~G~Gn~--p~~~~~a-l~~a~~~GipVV~~Sr~~~ 302 (349)
T TIGR00520 239 PKVDIIYAYQNAPPLIVNAVLDAGAKGIVLAGVGNGSL--SAAGLKV-NETAAKLGVPIVRSSRVPD 302 (349)
T ss_pred CcEEEEEECCCCCHHHHHHHHhCCCCEEEEEeECCCCC--CHHHHHH-HHHHHHCCCEEEEEccCCC
Confidence 478888888777899999888888887766543 2221 2334433 3468889999999998864
No 222
>PHA01633 putative glycosyl transferase group 1
Probab=20.30 E-value=3.6e+02 Score=23.81 Aligned_cols=79 Identities=6% Similarity=-0.002 Sum_probs=43.0
Q ss_pred cCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCCccceeeeEEECCCCceeeeCC-CCceEEEEEe
Q psy17819 165 KGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVYADI 243 (272)
Q Consensus 165 ~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~~~~~~~-~~~~~~~~~i 243 (272)
+.+|+++.||.+-. ..+...-|...|++|+.++..|. .+..-.|.+.++.++..-....+ ++.++.+-..
T Consensus 222 ~~aDifV~PS~~Eg-------fGlvlLEAMA~G~PVVas~~~~l--~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~ 292 (335)
T PHA01633 222 GAMDFTIVPSGTEG-------FGMPVLESMAMGTPVIHQLMPPL--DEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKF 292 (335)
T ss_pred HhCCEEEECCcccc-------CCHHHHHHHHcCCCEEEccCCCc--eeecCCccceeeCCCCHHHhcCcccCceeeecCC
Confidence 47999999987421 12334567788999998876542 12222234555543332111111 2345555556
Q ss_pred chhHHHHhh
Q psy17819 244 DLNTLNKVR 252 (272)
Q Consensus 244 d~~~~~~~r 252 (272)
|.+.+..+-
T Consensus 293 d~~~la~ai 301 (335)
T PHA01633 293 QIEDMANAI 301 (335)
T ss_pred CHHHHHHHH
Confidence 777666653
No 223
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.15 E-value=2.9e+02 Score=23.55 Aligned_cols=52 Identities=10% Similarity=0.067 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCcEEE-eCCCCCCCCCcchhhhhhhhcCCChHHHHHHHHHHHc-CcEEEE
Q psy17819 29 KNLENAVRFIRKAADNGASLIV-LPECFNCPYGTKYFREYSEEIGSGITSKTLSNVAKEK-EIFLVG 93 (272)
Q Consensus 29 ~n~~~~~~~i~~A~~~~~dlvv-fPE~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~iv~ 93 (272)
.+++...++.+.|.+.|+|-++ .|-+... ..+ .+..+.++.+++.. ++.|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~------------~~~-~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYK------------FSF-EEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC------------CCH-HHHHHHHHHHHHhcCCCCEEE
Confidence 4567777888888899999865 4554321 111 45678888888877 666555
No 224
>PLN02494 adenosylhomocysteinase
Probab=20.05 E-value=2.6e+02 Score=26.09 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=53.1
Q ss_pred eCCceEEEEeecCCCChHHHHHHHHcCCcEEEeccccCCCCCchhHHHHHHHHhhhCceEEEEEcCCcCCCCC-------
Q psy17819 140 NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSD------- 212 (272)
Q Consensus 140 ~~~~~igv~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~~~~~~~~~~~~~ra~en~~~vv~~n~~g~~~~~------- 212 (272)
..|.||+.++=.+.-.--+.+.+...||++.+..+|..+ .+...+.+.+ +.+++|..-- |++..+
T Consensus 44 l~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~s-----Tqd~vaaal~-~~gi~vfa~~--g~~~~ey~~~~~~ 115 (477)
T PLN02494 44 FKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS-----TQDHAAAAIA-RDSAAVFAWK--GETLQEYWWCTER 115 (477)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCcc-----chHHHHHHHH-hCCceEEEec--CCCHHHHHHHHHH
Confidence 458899999888888888889999999999987777322 2333343444 5677766432 332111
Q ss_pred -ccc---eeeeEEECCCCcee
Q psy17819 213 -YIA---WGHSTVVDPWANIL 229 (272)
Q Consensus 213 -~~~---~G~S~i~~p~G~~~ 229 (272)
+.+ .|+..|+|..|...
T Consensus 116 ~l~~~~~~~p~~i~DDG~dl~ 136 (477)
T PLN02494 116 ALDWGPGGGPDLIVDDGGDAT 136 (477)
T ss_pred HHcCCCCCCCCEEEeCCchHH
Confidence 111 25888988777644
Done!