RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17819
(272 letters)
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like
domain of NitFhit (class 10 nitrilases). This subgroup
includes mammalian Nit1 and Nit2, the Nit1-like domain
of the invertebrate NitFhit, and various uncharacterized
bacterial and archaeal Nit-like proteins. Nit1 and Nit2
are candidate tumor suppressor proteins. In NitFhit, the
Nit1-like domain is encoded as a fusion protein with the
non-homologous tumor suppressor, fragile histidine triad
(Fhit). Mammalian Nit1 and Fhit may affect distinct
signal pathways, and both may participate in DNA
damage-induced apoptosis. Nit1 is a negative regulator
in T cells. Overexpression of Nit2 in HeLa cells leads
to a suppression of cell growth through cell cycle
arrest in G2. These Nit proteins and the Nit1-like
domain of NitFhit belong to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 10.
Length = 265
Score = 397 bits (1023), Expect = e-141
Identities = 129/265 (48%), Positives = 168/265 (63%), Gaps = 17/265 (6%)
Query: 15 KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYS-EEIGS 73
++AL+QMT DK NL A I +AA GA L+VLPECFN P GT F+ EE G
Sbjct: 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDN--DKVYNAATV--------------HLFDIAI 117
G T + LS +AKE I+LVGGSIPE D+ KVYN + V HLFD+ +
Sbjct: 61 GPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDV 120
Query: 118 PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
PGGI+++ESD L+PG+ + + IGLGICYD+RFPELA+ ++G D+L P AF
Sbjct: 121 PGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFPELARALARQGADILTVPAAFT 180
Query: 178 MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
MTTGP HWELL+R+RA +NQ YV A + A D + +GHS +VDPW +LA + E
Sbjct: 181 MTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEGEG 240
Query: 238 IVYADIDLNTLNKVRDQIPTGKQKR 262
+V A+IDL+ L +VR QIP K +R
Sbjct: 241 VVVAEIDLDRLEEVRRQIPVLKHRR 265
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function
prediction only].
Length = 274
Score = 216 bits (553), Expect = 4e-70
Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 26/280 (9%)
Query: 12 KSFKIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY--FREYS 68
++A QM D +NL +R IR+AA GA L+V PE F Y + F E +
Sbjct: 1 SMMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEA 60
Query: 69 EEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLFDI 115
T + L+ +A+E + +VGG +PE NAA + HLFD
Sbjct: 61 AAEAGEETLEFLAALAEEGGVIIVGGPLPE-REKLYNNAALIDPDGEILGKYRKLHLFDA 119
Query: 116 AIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVY-RKKGCDLLIYP 173
++E +PG+ +F IGL ICYD+RFPELA+ G +LL+ P
Sbjct: 120 ------FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPELARRLLALGGAELLLVP 173
Query: 174 GAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TS 232
A+ G HWE+L+R+RA +NQVYV A + A + GHS ++DP +LA
Sbjct: 174 AAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLAEAG 233
Query: 233 QFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL 272
+ EE ++ ADIDL L +VR +IP K +R DV
Sbjct: 234 EEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDLDVELLR 273
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 253
Score = 206 bits (526), Expect = 3e-66
Identities = 91/262 (34%), Positives = 134/262 (51%), Gaps = 35/262 (13%)
Query: 15 KIALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS 73
KIAL+Q+ + D N+E I +AA GA LIVLPE +N Y E ++E G
Sbjct: 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGG 60
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAAT--------------VHLFDIAIPG 119
T LS +AK+ + +V GS+ E + K+YN A +HLF +
Sbjct: 61 E-TVSFLSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGLM--- 116
Query: 120 GITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT 179
E L+ G+ +F +GL ICYD+RFPEL + +G ++L P +
Sbjct: 117 ----GEDKYLTAGDELEVFELDGGKVGLFICYDLRFPELFRKLALEGAEILFVPAEW--- 169
Query: 180 TGPL----HWELLVRSRANDNQVYVAACSPA-QDKNSDYIAWGHSTVVDPWANILATSQF 234
P HW L+R+RA +NQ +V AC+ D +++ GHS V+DPW +LA +
Sbjct: 170 --PAARIEHWRTLLRARAIENQAFVVACNRVGTDGGNEFG--GHSMVIDPWGEVLAEAGE 225
Query: 235 EETIVYADIDLNTLNKVRDQIP 256
EE I+ A+IDL + +VR +IP
Sbjct: 226 EEEILTAEIDLEEVAEVRKKIP 247
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes.
This superfamily (also known as the C-N hydrolase
superfamily) contains hydrolases that break
carbon-nitrogen bonds; it includes nitrilases, cyanide
dihydratases, aliphatic amidases, N-terminal amidases,
beta-ureidopropionases, biotinidases, pantotheinase,
N-carbamyl-D-amino acid amidohydrolases, the glutaminase
domain of glutamine-dependent NAD+ synthetase,
apolipoprotein N-acyltransferases, and
N-carbamoylputrescine amidohydrolases, among others.
These enzymes depend on a Glu-Lys-Cys catalytic triad,
and work through a thiol acylenzyme intermediate.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. These oligomers include dimers, tetramers,
hexamers, octamers, tetradecamers, octadecamers, as well
as variable length helical arrangements and
homo-oligomeric spirals. These proteins have roles in
vitamin and co-enzyme metabolism, in detoxifying small
molecules, in the synthesis of signaling molecules, and
in the post-translational modification of proteins. They
are used industrially, as biocatalysts in the fine
chemical and pharmaceutical industry, in cyanide
remediation, and in the treatment of toxic effluent.
This superfamily has been classified previously in the
literature, based on global and structure-based sequence
analysis, into thirteen different enzyme classes
(referred to as 1-13). This hierarchy includes those
thirteen classes and a few additional subfamilies. A
putative distant relative, the plasmid-borne TraB
family, has not been included in the hierarchy.
Length = 253
Score = 204 bits (521), Expect = 2e-65
Identities = 101/264 (38%), Positives = 139/264 (52%), Gaps = 28/264 (10%)
Query: 16 IALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE--YSEEIG 72
IA VQ+ D NL A+R I++AA+ GA LIVLPE F Y + +E E
Sbjct: 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEEL 60
Query: 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIP 118
G T + L+ +AKE I++V G I E D DK+YN A V HLFD
Sbjct: 61 DGPTLEALAELAKELGIYIVAG-IAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---- 115
Query: 119 GGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
F E SPG+ F +F+ IGL ICYD+RFPELA+ KG D+++ P A+
Sbjct: 116 ----FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRFPELARELALKGADIILVPAAW-P 170
Query: 179 TTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEETI 238
T HWELL+R+RA +N VYV A + + G S +VDP +LA + EE I
Sbjct: 171 TARREHWELLLRARAIENGVYVVAANRV-GEEGGLEFAGGSMIVDPDGEVLAEASEEEGI 229
Query: 239 VYADIDLNTLNKVRDQIPTGKQKR 262
+ A++DL+ L + R + + +R
Sbjct: 230 LVAELDLDELREARKRWSYLRDRR 253
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 255
Score = 202 bits (515), Expect = 1e-64
Identities = 88/267 (32%), Positives = 126/267 (47%), Gaps = 32/267 (11%)
Query: 16 IALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK-YFREYSEEIGSG 74
+AL Q DK +NLE R + +AA GA L+V PE +G E G
Sbjct: 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDG 60
Query: 75 ITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIPGG 120
L+ +A+E I +V G + +VYN V HL+D
Sbjct: 61 PFVSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYD-----A 115
Query: 121 ITFKESDVLSPGNSFS--MFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
F+ESD ++PG+ +F G +GL CYD+RFPELA+ G D+++ P A+
Sbjct: 116 FGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELARALALAGADVIVVPAAWV- 174
Query: 179 TTGPL---HWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFE 235
GP HWE L+R+RA +N VYVAA A + G S VVDP +LA
Sbjct: 175 -AGPGKEEHWETLLRARALENTVYVAAAGQAGPRGI-----GRSMVVDPLGVVLADLGER 228
Query: 236 ETIVYADIDLNTLNKVRDQIPTGKQKR 262
E ++ ADID + + R+ +P + +R
Sbjct: 229 EGLLVADIDPERVEEAREALPVLENRR 255
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase.
Length = 286
Score = 179 bits (456), Expect = 3e-55
Identities = 91/274 (33%), Positives = 139/274 (50%), Gaps = 21/274 (7%)
Query: 11 AKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSE- 69
S ++A+ QMT D N R ++AA GA L+ LPECF G K +
Sbjct: 8 GSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECF-SFIGDKDGESLAIA 66
Query: 70 EIGSGITSKTLSNVAKEKEIFLVGGSIPEL--DNDKVYNAATV--------------HLF 113
E G + ++A+E ++L G E D+ +YN + HLF
Sbjct: 67 EPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLF 126
Query: 114 DIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYR-KKGCDLLIY 172
D+ +PGG KES +PG + ++ + +GL +CYD+RFPEL Q R + G +L+
Sbjct: 127 DVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYDLRFPELYQQLRFEHGAQVLLV 186
Query: 173 PGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-- 230
P AF TG HWE+L+R+RA + Q YV A + A N ++GH+ ++DPW ++A
Sbjct: 187 PSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVARL 246
Query: 231 TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYD 264
+ I ADIDL+ L+ VR ++P + +R
Sbjct: 247 PDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSL 280
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 258
Score = 148 bits (376), Expect = 1e-43
Identities = 84/266 (31%), Positives = 132/266 (49%), Gaps = 27/266 (10%)
Query: 15 KIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY-----GTKYFREYS 68
K+AL+QM +V D NL+ A ++AA GA LI PE Y G K + E S
Sbjct: 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLW-ELS 59
Query: 69 EEIGSGITSKTLSNVAKEKEIFLVGGSIPE-LDNDKVYNAATVHLFDIAIPGGITF---- 123
E I G T + S +AKE +++V G + + KVYN+A V D P G +
Sbjct: 60 EPID-GPTVRLFSELAKELGVYIVCGFVEKGGVPGKVYNSAVV--ID---PEGESLGVYR 113
Query: 124 ------KESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
E G + +F+ IG+ ICYDM FPE+A++ KG +++ P A+
Sbjct: 114 KIHLWGLEKQYFREGEQYPVFDTPFGKIGVMICYDMGFPEVARILTLKGAEVIFCPSAWR 173
Query: 178 MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEE 236
+ W++ + +RA +N V+V A D + +G S +++P +LA S+ E
Sbjct: 174 EQDADI-WDINLPARALENTVFV-AAVNRVGNEGDLVLFGKSKILNPRGQVLAEASEEAE 231
Query: 237 TIVYADIDLNTLNKVRDQIPTGKQKR 262
I+YA+IDL+ + R +P K ++
Sbjct: 232 EILYAEIDLDAIADYRMTLPYLKDRK 257
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 261
Score = 145 bits (368), Expect = 2e-42
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 25/269 (9%)
Query: 15 KIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
+IALVQ VG DK +NL R+ RKAA GA L+ PE Y E+
Sbjct: 1 RIALVQFEARVG-DKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVP 59
Query: 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFK-------- 124
G +++ LS++A+ + ++ G I E D+ YN +L + +P G+ +
Sbjct: 60 DGPSTQALSDLARRYGLTILAGLI-EKAGDRPYNT---YL--VCLPDGLVHRYRKLHLFR 113
Query: 125 -ESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPL 183
E ++ G+ + +F G+ ICYD FPE + G ++L P A TT P
Sbjct: 114 REHPYIAAGDEYPVFATPGVRFGILICYDNHFPENVRATALLGAEILFAPHATPGTTSPK 173
Query: 184 HWELLVR---SRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEETIV 239
E +R +RA DN V+VAAC+ + + G + ++DP+ +LA T+ + +V
Sbjct: 174 GREWWMRWLPARAYDNGVFVAACNGVGR-DGGEVFPGGAMILDPYGRVLAETTSGGDGMV 232
Query: 240 YADIDLNTLNKVRDQ--IPTGKQKRYDLY 266
AD+DL+ +N VR + I + +R +LY
Sbjct: 233 VADLDLDLINTVRGRRWISFLRARRPELY 261
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11
nitrilases). CPA (EC 3.5.1.53, also known as
N-carbamoylputrescine amidase and carbamoylputrescine
hydrolase) converts N-carbamoylputrescine to putrescine,
a step in polyamine biosynthesis in plants and bacteria.
This subgroup includes Arabidopsis thaliana CPA, also
known as nitrilase-like 1 (NLP1), and Pseudomonas
aeruginosa AguB. This subgroup belongs to a larger
nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 11. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer; P.
aeruginosa AugB is a homohexamer, Arabidopsis thaliana
NLP1 is a homooctomer.
Length = 284
Score = 141 bits (358), Expect = 1e-40
Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 34/283 (12%)
Query: 14 FKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY-----GTKYFREYS 68
+ALVQM +D NL A +R+AA GA ++ L E F PY YF + +
Sbjct: 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYF-DLA 59
Query: 69 EEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVY-NAATVHLFD----IA------- 116
E G T+ +AKE + + S+ E + +Y N+A V D +
Sbjct: 60 EPPIPGPTTARFQALAKELGVVIP-VSLFEKRGNGLYYNSAVV--IDADGSLLGVYRKMH 116
Query: 117 IPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA 175
IP + E +PG++ F +F+ IG+ IC+D FPE A++ +G ++L YP A
Sbjct: 117 IPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAARLMALQGAEILFYPTA 176
Query: 176 F-NMTTGP-------LHWELLVRSRANDNQVYVAACSPA---QDKNSDYIAWGHSTVVDP 224
+ P W+ + R A N V VAA + D S +G S + DP
Sbjct: 177 IGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIADP 236
Query: 225 WANILA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266
+ ILA S+ EE I+ A+ DL+ + +VR P + +R DLY
Sbjct: 237 FGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLY 279
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 268
Score = 137 bits (346), Expect = 4e-39
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 46/261 (17%)
Query: 15 KIALVQMT--VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYF------RE 66
++A VQ VG D + NL ++ IR+AAD GA+L+VLPE N Y F
Sbjct: 1 RVACVQFDPRVG-DLDANLARSIELIREAADAGANLVVLPELANTGY---VFESRDEAFA 56
Query: 67 YSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLF 113
+EE+ G +++ + +A E +++V G E D D++YN+A + HL+
Sbjct: 57 LAEEVPDGASTRAWAELAAELGLYIVAG-FAERDGDRLYNSAVLVGPDGVIGTYRKAHLW 115
Query: 114 DIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIY 172
+ E + PG+ +F+ IG+ ICYD FPE ++ +G D++
Sbjct: 116 NE---------EKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFRLLALQGADIVCV 166
Query: 173 PGAFNMTTGPLHWEL-----LVRSRANDNQVYVAACSPA-QDKNSDYIAWGHSTVVDPWA 226
P + P L + A+ N +++A ++ +I G S +V P
Sbjct: 167 PTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTERGQPFI--GQSLIVGPDG 224
Query: 227 NILAT--SQFEETIVYADIDL 245
LA S EE I+ ADIDL
Sbjct: 225 WPLAGPASGDEEEILLADIDL 245
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. This family
contains hydrolases that break carbon-nitrogen bonds.
The family includes: Nitrilase EC:3.5.5.1, Aliphatic
amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12,
Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related
proteins generally have a conserved E-K-C catalytic
triad, and are multimeric alpha-beta-beta-alpha sandwich
proteins.
Length = 172
Score = 130 bits (330), Expect = 8e-38
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 25/179 (13%)
Query: 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY--FREYSEEI 71
K+ALVQ+ D NL+ + I +AA GA L+VLPE F Y + E +E I
Sbjct: 1 KVALVQLPPSAFDLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYLELAEAI 60
Query: 72 GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAI 117
G T + LS +A++ I +V G IPE D +YN + HL
Sbjct: 61 -PGETLQFLSALARKNGITVVAG-IPEKDGGGLYNTLVLIDPDGELLGKYRKRHLVP--- 115
Query: 118 PGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA 175
+ E + PG + F +F+ + +GL ICY++RFPELA++ KG ++L P A
Sbjct: 116 --VGEWVERPLFGPGGATFPVFDTPVGKLGLLICYEIRFPELARMLALKGAEILANPSA 172
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and
related proteins (putative class 13 nitrilases).
Pseudomonas sp. MCI3434 R-amidase hydrolyzes
(R,S)-piperazine-2-tert-butylcarboxamide to form
(R)-piperazine-2-carboxylic acid. It does so with strict
R-stereoselectively. Its preferred substrates are
carboxamide compounds which have the amino or imino
group connected to their beta- or gamma-carbon. This
subgroup belongs to a larger nitrilase superfamily
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), class 13 represents proteins that
at the time were difficult to place in a distinct
similarity group. It has been suggested that this
subgroup represents a new class. Members of the
nitrilase superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. Native R-amidase however appears to be a
monomer.
Length = 254
Score = 126 bits (319), Expect = 3e-35
Identities = 76/259 (29%), Positives = 108/259 (41%), Gaps = 30/259 (11%)
Query: 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS 73
++AL Q D NL +AA GA L+V PE F Y E
Sbjct: 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPAD 60
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAIPG 119
G + L +A+ I +V G PE VYNAA + HLF G
Sbjct: 61 GPALQALRAIARRHGIAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLF-----G 114
Query: 120 GITFKESDVLSPGNSFSMFN-NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNM 178
E +PG+ F + G+ +GL ICYD+ FPEL + G DL++ P A M
Sbjct: 115 DS---ERAAFTPGDRFPVVELRGL-RVGLLICYDVEFPELVRALALAGADLVLVPTA-LM 169
Query: 179 T-TGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
G + LV +RA +NQ++VA + G S++ P +LA + E
Sbjct: 170 EPYGFVA-RTLVPARAFENQIFVAYANRC-GAEDGLTYVGLSSIAGPDGTVLARAGRGEA 227
Query: 238 IVYADIDLNTLNKVRDQIP 256
++ AD+D L R + P
Sbjct: 228 LLVADLDPAALAAARRENP 246
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase. Members
of this family are N-carbamoylputrescine amidase
(3.5.1.53). Bacterial genes are designated AguB. The
AguAB pathway replaces SpeB for conversion of agmatine
to putrescine in two steps rather than one [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 279
Score = 117 bits (295), Expect = 1e-31
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 31/280 (11%)
Query: 15 KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY-----GTKYFREYSE 69
+A +QM D N+ A R +R+AA GA +I+LPE F PY YF ++
Sbjct: 2 TVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYF-ALAQ 60
Query: 70 EIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIA-----------IP 118
+ K +AKE + + S E + YN ++ + D IP
Sbjct: 61 PVEGHPAIKRFQALAKELGVVIP-VSFFEKAGNAYYN--SLAMIDADGSVLGVYRKSHIP 117
Query: 119 GGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
G ++E PG++ F +++ IG+GIC+D FPE A+ G ++L YP A
Sbjct: 118 DGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETARAMALMGAEVLFYPTAIG 177
Query: 178 MTTGPL------HWELLVRSRANDNQVYVAACSPAQDKNSDYIA---WGHSTVVDPWANI 228
HW+ +++ A N V V A + + D +G S + D +
Sbjct: 178 SEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEIGDGGEQTFYGSSFIADHTGEL 237
Query: 229 LA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267
+A + EE ++ A DL+ + K R + +R +LY
Sbjct: 238 VAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYG 277
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the
nitrilase superfamily; some members of this subgroup
have an N-terminal RimI domain (class 12 nitrilases).
Some members of this subgroup are implicated in
post-translational modification, as they contain an
N-terminal GCN5-related N-acetyltransferase (GNAT)
protein RimI family domain. The nitrilase superfamily is
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), this subgroup corresponds to
class 12. Members of this superfamily generally form
homomeric complexes, the basic building block of which
is a homodimer.
Length = 280
Score = 112 bits (283), Expect = 9e-30
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 56/282 (19%)
Query: 14 FKIALVQMTVGKDKN-KNLENAV-RFIRKAADNGASLIVLPECFN------CPYGTKYFR 65
++A Q + + + + V ++ +AA GA L+V PE F P
Sbjct: 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLD 60
Query: 66 EYSEEIGSGITS---KTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGG-- 120
E + + +T S +A++ I ++ GS+P ++ ++YN A +LF P G
Sbjct: 61 EAIRAL-AALTPDYVALFSELARKYGINIIAGSMPVREDGRLYNRA--YLFG---PDGTI 114
Query: 121 -------ITFKESDV--LSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLI 171
+T E + +S G+ +F+ + IG+ ICYD FPELA+ + G DLL+
Sbjct: 115 GHQDKLHMTPFEREEWGISGGDKLKVFDTDLGKIGILICYDSEFPELARALAEAGADLLL 174
Query: 172 YPGAFNMTTGPLHWELLVR----SRANDNQVYVAAC--------SPAQDKNSDYIAWGHS 219
P T VR +RA +NQ YV SPA D + +G +
Sbjct: 175 VPSC----TDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVD-----VNYGQA 225
Query: 220 TVVDP----WAN--ILATSQ-FEETIVYADIDLNTLNKVRDQ 254
V P + ILA + E + AD+DL L ++R++
Sbjct: 226 AVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREE 267
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related
proteins, members of the nitrilase superfamily (putative
class 13 nitrilases). Uncharacterized subgroup of the
nitrilase superfamily. This superfamily is comprised of
nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. Pyrococcus horikoshii Ph0642 is a
hypothetical protein belonging to this subgroup. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
This subgroup was classified as belonging to class 13,
which represents proteins that at the time were
difficult to place in a distinct similarity group.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer.
Length = 259
Score = 110 bits (278), Expect = 4e-29
Identities = 78/265 (29%), Positives = 117/265 (44%), Gaps = 52/265 (19%)
Query: 15 KIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFR------EY 67
K+ VQ + KNL+ I+ A LIVLPE FN Y F
Sbjct: 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGY---AFTSKEEVASL 54
Query: 68 SEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLFD 114
+E I G T++ L +A+E ++V G +PE D DK YN+A V HLF
Sbjct: 55 AESIPDGPTTRFLQELARETGAYIVAG-LPERDGDKFYNSAVVVGPEGYIGIYRKTHLF- 112
Query: 115 IAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYP 173
++E PG++ F +F+ G IG+ IC+D FPE A+ KG D++ +P
Sbjct: 113 --------YEEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAARTLALKGADIIAHP 164
Query: 174 GAFNMTTGPLHWELLVRSRANDNQVYVA-ACSPAQDKNSD----YIAWGHSTVVDPWANI 228
N+ P + + RA +N+V+ A ++ +I G S + P +
Sbjct: 165 A--NLVL-P-YCPKAMPIRALENRVFTITANRIGTEERGGETLRFI--GKSQITSPKGEV 218
Query: 229 L--ATSQFEETIVYADIDLN-TLNK 250
L A EE +V A+ID +K
Sbjct: 219 LARAPEDGEEVLV-AEIDPRLARDK 242
>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related
proteins, members of the nitrilase superfamily (putative
class 13 nitrilases). Uncharacterized subgroup
belonging to a larger nitrilase superfamily comprised of
nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), class 13 represents proteins that
at the time were difficult to place in a distinct
similarity group; this subgroup either represents a new
class or one that was included previously in class 13.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. XC1258 is a homotetramer.
Length = 252
Score = 101 bits (255), Expect = 8e-26
Identities = 75/266 (28%), Positives = 112/266 (42%), Gaps = 48/266 (18%)
Query: 15 KIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS 73
KIAL+Q V +D NL + I + LIVLPE F + +E +
Sbjct: 2 KIALIQTDLVWEDPEANLAHFEEKIEQL-KEKTDLIVLPEMFTTGFSMNA-EALAEPMN- 58
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAA-------TV------HLFDIAIPGG 120
G T + + AK+K + GS+ + K YN V HLF +A
Sbjct: 59 GPTLQWMKAQAKKKGA-AITGSLIIKEGGKYYNRLYFVTPDGEVYHYDKRHLFRMA---- 113
Query: 121 ITFKESDVLSPGNSFSMFN-NGICNIGLGICYDMRFPELA---QVYRKKGCDLLIY---- 172
E V + GN + G I L +CYD+RFP + Y DLL+Y
Sbjct: 114 ---GEHKVYTAGNERVIVEYKGW-KILLQVCYDLRFPVWSRNTNDY-----DLLLYVANW 164
Query: 173 PGAFNMTTGPLHWELLVRSRANDNQVYVAACSP-AQD-KNSDYIAWGHSTVVDPWANILA 230
P W+ L+++RA +NQ YV + D +Y G S V+DP LA
Sbjct: 165 PAPRR-----AAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYS--GDSAVIDPLGEPLA 217
Query: 231 TSQFEETIVYADIDLNTLNKVRDQIP 256
++ +E ++ A +D L + R++ P
Sbjct: 218 EAEEDEGVLTATLDKEALQEFREKFP 243
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase
(beta-AS) and similar proteins (class 5 nitrilases).
This family includes mammalian-like beta-AS (EC 3.5.1.6,
also known as beta-ureidopropionase or
N-carbamoyl-beta-alanine amidohydrolase). This enzyme
catalyzes the third and final step in the catabolic
pyrimidine catabolic pathway responsible for the
degradation of uracil and thymine, the hydrolysis of
N-carbamyl-beta-alanine and
N-carbamyl-beta-aminoisobutyrate to the beta-amino
acids, beta-alanine and beta-aminoisobutyrate
respectively. This family belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 5. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer. Beta-ASs
from this subgroup are found in various oligomeric
states, dimer (human), hexamer (calf liver), decamer
(Arabidopsis and Zea mays), and in the case of
Drosophila melanogaster beta-AS, as a homooctamer
assembled as a left-handed helical turn, with the
possibility of higher order oligomers formed by adding
dimers at either end. Rat beta-AS changes its oligomeric
state (hexamer, trimer, dodecamer) in response to
allosteric effectors. Eukaryotic Saccharomyces kluyveri
beta-AS belongs to a different superfamily.
Length = 287
Score = 94.1 bits (234), Expect = 1e-22
Identities = 80/287 (27%), Positives = 130/287 (45%), Gaps = 33/287 (11%)
Query: 15 KIALVQMT--------VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY----GTK 62
++ L+Q + + K K ++ V IR+AA+ GA ++ L E F PY
Sbjct: 5 RVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDT 64
Query: 63 YFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKV-YNAATVHLFD------- 114
+ E++EEI +G T+K + +AKE + L+ I E + YN A V D
Sbjct: 65 KWYEFAEEIPNGPTTKRFAALAKEYNMVLI-LPIYEKEQGGTLYNTAAVIDADGTYLGKY 123
Query: 115 --IAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLI 171
IP F E PGN + +F+ IG+ ICYD FPE + G +++
Sbjct: 124 RKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYICYDRHFPEGWRALGLNGAEIVF 183
Query: 172 YPGAFNMTTGPLH---WELLVRSRANDNQVYVAACSPAQDKNSDYIA--WGHSTVVDPWA 226
P A T L W+L + A N +V A + + I +G S VDP
Sbjct: 184 NPSA---TVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVDPRG 240
Query: 227 NILAT-SQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL 272
+A+ S+ ++ ++ A++DL+ + +VRD + +R + Y KL
Sbjct: 241 QFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELTKL 287
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and
similar proteins (class 1 nitrilases). Nitrilases
(nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles
(RCN) to ammonia and the corresponding carboxylic acid.
Most nitrilases prefer aromatic nitriles, some prefer
arylacetonitriles and others aliphatic nitriles. This
group includes the nitrilase cyanide dihydratase (CDH),
which hydrolyzes inorganic cyanide (HCN) to produce
formate. It also includes cyanide hydratase (CH), which
hydrolyzes HCN to formamide. This group includes four
Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3
have a strong substrate preference for
phenylpropionitrile (PPN) and other nitriles which may
originate from the breakdown of glucosinolates. The
product of PPN hydrolysis, phenylacetic acid has auxin
activity. AthNIT1-3 can also convert indoacetonitrile to
indole-3-acetic acid (IAA, auxin), but with a lower
affinity and velocity. From their expression patterns,
it has been speculated that NIT3 may produce IAA during
the early stages of germination, and that NIT3 may
produce IAA during embryo development and maturation.
AthNIT4 has a strong substrate specificity for the
nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate
of cyanide detoxification. AthNIT4 has both a nitrilase
activity and a nitrile hydratase (NHase) activity, which
generate aspartic acid and asparagine respectively from
Ala(CN). NHase catalyzes the hydration of nitriles to
their corresponding amides. This subgroup belongs to a
larger nitrilase superfamily comprised of belong to a
larger nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 1.
Length = 297
Score = 90.2 bits (225), Expect = 3e-21
Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 62/306 (20%)
Query: 14 FKIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECF-----------NCPYGT 61
K+A VQ V D +E A R I +AA NGA L+V PE F G
Sbjct: 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGR 60
Query: 62 KYFREY---SEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIP 118
+ F Y S E+ + L+ A+E I++V G E D +YN T L D P
Sbjct: 61 ELFARYYENSVEVDGPELER-LAEAARENGIYVVLGVS-ERDGGTLYN--TQLLID---P 113
Query: 119 GGI----------TFKESDVLSPGN--SFSMFNNGICNIGLGICYD-----MRFPELAQV 161
G T E V G+ + + I +G IC++ R+ AQ
Sbjct: 114 DGELLGKHRKLKPTHAERLVWGQGDGSGLRVVDTPIGRLGALICWENYMPLARYALYAQ- 172
Query: 162 YRKKGCDLLI--YPGAFNMTTGPLHWELLVRSRANDNQVYVAACS-----PAQDKNSDYI 214
G + + +P W R A + + +V + + +
Sbjct: 173 ----GEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDD 228
Query: 215 AW---------GHSTVVDPWANILATSQF-EETIVYADIDLNTLNKVR-DQIPTGKQKRY 263
G S +V P +LA EE I+YADIDL+ + + + D P G R
Sbjct: 229 EEADPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRP 288
Query: 264 DLYDVT 269
D++ +T
Sbjct: 289 DVFSLT 294
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase.
Length = 296
Score = 89.4 bits (222), Expect = 5e-21
Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 31/286 (10%)
Query: 16 IALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE----YSEEI 71
+A +Q D+ N++ A R +R+A GA++I++ E F Y + RE ++
Sbjct: 9 VAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPY 68
Query: 72 GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIA---------IPGGIT 122
T + +AKE + + S E N+ YN+ + D IP G
Sbjct: 69 EGHPTIARMQKLAKELGVVIP-VSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPG 127
Query: 123 FKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF----- 176
++E +PG++ F +F+ IG+ IC+D FPE A+ +G ++L+YP A
Sbjct: 128 YQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQ 187
Query: 177 --NMTTGPLHWELLVRSRANDNQVYVAACS-------PAQDKNSDYIAWGHSTVVDPWAN 227
+ + HW+ +++ A N V + A + + S +G S + P
Sbjct: 188 DPGLDSRD-HWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIAGPTGE 246
Query: 228 ILATSQFE-ETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAKL 272
I+A + + E ++ A+ DL+ + R + +R DLY V L
Sbjct: 247 IVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTL 292
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT,
glutaminase) domain of glutamine-dependent NAD
synthetases (class 7 and 8 nitrilases).
Glutamine-dependent NAD synthetases are bifunctional
enzymes, which have an N-terminal GAT domain and a
C-terminal NAD+ synthetase domain. The GAT domain is a
glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to
L-glutamate and ammonia. The ammonia is used by the NAD+
synthetase domain in the ATP-dependent amidation of
nicotinic acid adenine dinucleotide. Glutamine
aminotransferases are categorized depending on their
active site residues into different unrelated classes.
This class of GAT domain belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to classes 7 and 8. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Mycobacterium tuberculosis glutamine-dependent NAD+
synthetase forms a homooctamer.
Length = 261
Score = 76.7 bits (190), Expect = 1e-16
Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 55/284 (19%)
Query: 15 KIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK--YFR----E 66
+IAL Q+ TVG D N E + IR+A GA L+V PE Y + R E
Sbjct: 1 RIALAQLNPTVG-DLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLE 59
Query: 67 YSEEIGSGITSKTLSNVAKEKEI-FLVGGSIPELDNDKVYNAATVHLFD--IAIPGGITF 123
+EE + + T + +I +VG +P + K+YNAA V L + I G+
Sbjct: 60 AAEEALEELAAAT-----ADLDIAVVVG--LPLRHDGKLYNAAAV-LQNGKIL---GVVP 108
Query: 124 K----------ESDVLSPGNSFSMFNNGICNIGLGICYDMRFP-----ELAQVYRKKGCD 168
K E +PG+ + IG+ IC D+ P ELA G D
Sbjct: 109 KQLLPNYGVFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWVPDPPSAELAL----AGAD 164
Query: 169 LLIYPGAFNMTTGPLHW-ELLVRSRANDNQ---VYVAA-CSPAQDKNSDYIAWGHSTVVD 223
L++ A G + LV SR+ VYV D + G S + D
Sbjct: 165 LILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGG-----QDDLVFDGGSFIAD 219
Query: 224 PWANILA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266
+LA +FEE + AD+DL+ L R + + + ++Y
Sbjct: 220 NDGELLAEAPRFEEDL--ADVDLDRLRSERRRNSSFLDEEAEIY 261
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 269
Score = 75.8 bits (187), Expect = 4e-16
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 29/264 (10%)
Query: 15 KIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIG 72
++A+ Q+ +G D +NLE + I A + GA L+V PE Y + E+
Sbjct: 1 RVAIAQIDPVLG-DVEENLEKHLEIIETARERGADLVVFPELSLTGYNLG---DLVYEVA 56
Query: 73 SGITSKTLSNVA-KEKEIFLVGGSIPELDNDKVYNAA-------TVHL-FDIAIPGGITF 123
L +A I +V G + E + + YN+A VH+ + +P F
Sbjct: 57 MHADDPRLQALAEASGGICVVFGFVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLF 116
Query: 124 KESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYP---------G 174
+E +PG+ F+ G+ IC D P L + G D++ P G
Sbjct: 117 EEGRYFAPGSHLRAFDTRFGRAGVLICEDAWHPSLPYLLALDGADVIFIPANSPARGVGG 176
Query: 175 AFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT-SQ 233
F+ WE L++ A N VYV + ++ Y WG S VVDP ++A
Sbjct: 177 DFDNEEN---WETLLKFYAMMNGVYVVFANRVGVEDGVYF-WGGSRVVDPDGEVVAEAPL 232
Query: 234 FEETIVYADIDLNTLNKVRDQIPT 257
FEE ++ A++D + + + R PT
Sbjct: 233 FEEDLLVAELDRSAIRRARFFSPT 256
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an
uncharacterized subgroup of the nitrilase superfamily
(putative class 13 nitrilases). Members of this
subgroup have two nitrilase domains. This is the second
of those two domains. The nitrilase superfamily is
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13). Class 13 represents proteins that
at the time were difficult to place in a distinct
similarity group; this subgroup represents either a new
class or one that was included previously in class 13.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer.
Length = 279
Score = 74.9 bits (184), Expect = 8e-16
Identities = 83/285 (29%), Positives = 120/285 (42%), Gaps = 52/285 (18%)
Query: 15 KIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSE-EIGS 73
+IA+ Q D NL R +A GA L+V PE T SE E +
Sbjct: 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPEL----ALTGLDDPASEAESDT 56
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGI--TFKESDV--- 128
G L +A+ ++LV G E D D +YN+A + P G+ T++++ +
Sbjct: 57 GPAVSALRRLARRLRLYLVAG-FAEADGDGLYNSAV-----LVGPEGLVGTYRKTHLIEP 110
Query: 129 ----LSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGA--------- 175
+PG+++ +++ + +GL I +D FPE +V +GCDLL P A
Sbjct: 111 ERSWATPGDTWPVYDLPLGRVGLLIGHDALFPEAGRVLALRGCDLLACPAAIAIPFVGAH 170
Query: 176 --------FNMTTG--PLHWELLVRSRANDNQVYVA-ACSPAQDKNSDYIAW----GHST 220
+ + TG P HW L R RA +N VY A A P D Y W G T
Sbjct: 171 AGTSVPQPYPIPTGADPTHWHLA-RVRAGENNVYFAFANVP--DPARGYTGWSGVFGPDT 227
Query: 221 VVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDL 265
P EE I +A ID + L+ PT +R DL
Sbjct: 228 FAFPRQEAAIGD--EEGIAWALIDTSNLDSR---YPTNVVRRKDL 267
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional.
Length = 540
Score = 70.2 bits (173), Expect = 1e-13
Identities = 67/259 (25%), Positives = 103/259 (39%), Gaps = 47/259 (18%)
Query: 14 FKIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK-------YF 64
+IAL Q+ TVG D N + +AAD GA L++ PE F Y + +
Sbjct: 1 LRIALAQLNPTVG-DIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL 59
Query: 65 REYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFD---IAI---- 117
+ + L+ LVG P + K+YNAA + L +A
Sbjct: 60 AACEAAL------ERLAAATAGGPAVLVGH--PWREGGKLYNAAAL-LDGGEVLATYRKQ 110
Query: 118 --PGGITFKESDVLSPGNSFSMFN-NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPG 174
P F E +PG + G+ IG+ IC D+ PE A+ + G +LL+ P
Sbjct: 111 DLPNYGVFDEKRYFAPGPEPGVVELKGV-RIGVPICEDIWNPEPAETLAEAGAELLLVPN 169
Query: 175 AFNMTTGPLHW------ELLVRSRANDNQVYVAACSP--AQDKNSDYIAWGHSTVVDPWA 226
A P H E ++R+R + + + + QD + + G S V++
Sbjct: 170 A-----SPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQD---ELVFDGASFVLNADG 221
Query: 227 NILAT-SQFEETIVYADID 244
+ A FEE I D D
Sbjct: 222 ELAARLPAFEEQIAVVDFD 240
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.
Length = 256
Score = 63.2 bits (154), Expect = 9e-12
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 149 ICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGP----LHWELLVRSRANDNQVYVAACS 204
+CYD+RFP V+ + D Y A + P LHW+ L+ +RA +NQ YVA C+
Sbjct: 140 VCYDLRFP----VWSRNRND---YDLALYVANWPAPRSLHWQTLLTARAIENQAYVAGCN 192
Query: 205 PAQDKNSDYIAWGHSTVVDPWANILATSQ-FEETIVYADIDLNTLNKVRDQIP 256
+ + G S +++P I+AT++ + T + A++ L L + R++ P
Sbjct: 193 RVGSDGNGHHYRGDSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFP 245
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an
uncharacterized subgroup of the nitrilase superfamily
(putative class 13 nitrilases). Members of this
subgroup have two nitrilase domains. This is the first
of those two domains. The nitrilase superfamily is
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13). Class 13 represents proteins that
at the time were difficult to place in a distinct
similarity group; this subgroup represents either a new
class or one that was included previously in class 13.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer.
Length = 258
Score = 61.8 bits (150), Expect = 3e-11
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 29/251 (11%)
Query: 14 FKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFN---CPYGTKYFREYSE 69
+K A +Q +K +N+E + +AA GA LIV PE C Y + E
Sbjct: 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVE 60
Query: 70 EIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDK--VYNAATVHLFDIAIPGGIT----- 122
I G T+ + +A+E + ++V G +PE+D+ YN+A + P G+
Sbjct: 61 PI-PGPTTARFAELAREHDCYIVVG-LPEVDSRSGIYYNSAV-----LIGPSGVIGRHRK 113
Query: 123 ----FKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
E + G+ +F+ I I L IC D+ F E A++ G D++ + +
Sbjct: 114 THPYISEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFETARLLALGGADVICHISNWL 173
Query: 178 MTTGPL-HWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEE 236
P +W +RA +N Y+ + + + G S +++P I A+ +
Sbjct: 174 AERTPAPYW----INRAFENGCYLIESNRWGLERGVQFS-GGSCIIEPDGTIQASIDSGD 228
Query: 237 TIVYADIDLNT 247
+ +IDL+
Sbjct: 229 GVALGEIDLDR 239
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 294
Score = 59.7 bits (145), Expect = 2e-10
Identities = 61/274 (22%), Positives = 100/274 (36%), Gaps = 50/274 (18%)
Query: 22 TVGKDKNKNLENAVRFIRKA-----ADNGASLIVLPECF--NCPYGTKYFREYSEEIGSG 74
D N++ I A L+VLPE P G RE + +
Sbjct: 14 EDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGE--PREVWQFDKAA 71
Query: 75 IT-----SKTLSNVAKEKEIFLVGGSIPELDND---KVYNAATVHLFDIAIPGGITFKES 126
I ++ L AKE +++ + E D D +N A F I G I +
Sbjct: 72 IDIPGPETEALGEKAKELNVYIAANAY-ERDPDFPGLYFNTA----FIIDPSGEIILRYR 126
Query: 127 DVLS-------------------PGNS----FSMFNNGICNIGLGICYDMRFPELAQVYR 163
+ S G F + + I N+G C + +PE+A+
Sbjct: 127 KMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPVADTEIGNLGCLACEEGLYPEVARGLA 186
Query: 164 KKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAW---GHST 220
G ++L+ + + WE+ R+RA +N YV + + S Y A G S
Sbjct: 187 MNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSM 246
Query: 221 VVDPWANILATSQF--EETIVYADIDLNTLNKVR 252
+VD +LA + + + A+ID+ L + R
Sbjct: 247 IVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRAR 280
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2
nitrilases). Aliphatic amidases catalyze the hydrolysis
of short-chain aliphatic amides to form ammonia and the
corresponding organic acid. This group includes
Pseudomonas aeruginosa (Pa) AmiE, the amidase from
Geobacillus pallidus RAPc8 (RAPc8 amidase), and
Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and
HpAmiE hydrolyze various very short aliphatic amides,
including propionamide, acetamide and acrylamide. HpAmiF
is a formamidase which specifically hydrolyzes
formamide. These proteins belong to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 2. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer. HpAmiE ,
HpAmiF, and RAPc8 amidase, and PaAimE appear to be
homohexameric enzymes, trimer of dimers.
Length = 291
Score = 52.7 bits (127), Expect = 4e-08
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 143 CNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVA- 201
I L IC+D +PE+A+ KG +L+I + M W + ++ A N +Y A
Sbjct: 146 SKIALIICHDGMYPEIARECAYKGAELIIRIQGY-MYPAKDQWIITNKANAWCNLMYTAS 204
Query: 202 ACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEE-TIVYADI 243
D Y +G S +V+ L E IV A++
Sbjct: 205 VNLAGFDGVFSY--FGESMIVNFDGRTLGEGGREPDEIVTAEL 245
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase
(class 9 nitrilases). ALP N-acyl transferase (Lnt), is
an essential membrane-bound enzyme in gram-negative
bacteria, which catalyzes the N-acylation of
apolipoproteins, the final step in lipoprotein
maturation. This is a reverse amidase (i.e.
condensation) reaction. This subgroup belongs to a
larger nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 9.
Length = 270
Score = 52.2 bits (126), Expect = 5e-08
Identities = 60/278 (21%), Positives = 98/278 (35%), Gaps = 71/278 (25%)
Query: 14 FKIALVQ-------MTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFN-CPYGTKYFR 65
++ALVQ + + L+ + R+ AD L+V PE P+ +
Sbjct: 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPE--TALPFDLQRDP 58
Query: 66 EYSEEIGSGITSKTLSNVAKEKEI-FLVGGSIPELDNDKVYNAATV-------------- 110
+ + + A+ L G E + YN+A +
Sbjct: 59 DALARL---------ARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKH 109
Query: 111 HLFDIAIPGG-----------ITFKESDV---LSPGNSF--SMFNNGICNIGLGICYDMR 154
HL P G + SPG + G+ +G ICY+
Sbjct: 110 HLV----PFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQPLLLGGGV-RVGPLICYESI 164
Query: 155 FPELAQVYRKKGCDLLIYP---GAFNMTTGPL-HWELLVRSRANDNQVYVAACSPAQDKN 210
FPEL + ++G DLL+ F + GP H + R RA + + + N
Sbjct: 165 FPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLA-MARLRAIETGRPLVRAA-----N 218
Query: 211 SDYIAWGHSTVVDPWANILA-TSQFEETIVYADIDLNT 247
+ G S V+DP I+A FE ++ A++ L T
Sbjct: 219 T-----GISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase.
Length = 346
Score = 51.3 bits (123), Expect = 2e-07
Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 61/289 (21%)
Query: 9 STAKSFKIALVQM-TVGKDKNKNLENAVRFIRKAADNGASLIVLPECF------------ 55
+++ + + +VQ TV D L+ A R I +AA G+ L+V PE F
Sbjct: 20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGL 79
Query: 56 ----NCPYGTKYFREY-SEEIG-SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAAT 109
P G + FR+Y + I G L+ +A + +++LV G I E D +Y T
Sbjct: 80 AIGDRSPKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVI-ERDGYTLYC--T 136
Query: 110 VHLFDIAIPGGITFKESDVLSP------------GNSFSMFNNGICNIGLGICYDMRFPE 157
V FD P G + L P G++ +++ I IG IC++ R P
Sbjct: 137 VLFFD---PQGQYLGKHRKLMPTALERLIWGFGDGSTIPVYDTPIGKIGAVICWENRMPL 193
Query: 158 LAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAAC-----------SP- 205
L KG ++ P A + T W+ +R A + +V + P
Sbjct: 194 LRTAMYAKGIEIYCAPTADSRET----WQASMRHIALEGGCFVLSANQFCRRKDYPPPPE 249
Query: 206 ------AQDKNSDYIAW-GHSTVVDPWANILATSQFE-ETIVYADIDLN 246
+D D I G S ++ P +LA +E E ++ AD+DL
Sbjct: 250 YLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLG 298
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase. This enzyme
transfers the acyl group to lipoproteins in the
lgt/lsp/lnt system which is found broadly in bacteria
but not in archaea. This model represents one component
of the "lipoprotein lgt/lsp/lnt system" genome property
[Protein fate, Protein modification and repair].
Length = 391
Score = 47.7 bits (114), Expect = 2e-06
Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 61/255 (23%)
Query: 9 STAKSFKIALVQMTV---GKDKNKNLENAVRFI---RKAADNGASLIVLPECFNCPYGTK 62
+ +ALVQ + K ++ LE + + K A L+V PE
Sbjct: 155 VPGPTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVEKPDLVVWPETAFPFDLEN 214
Query: 63 YFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKV---YNAATV-----HLFD 114
++ ++ + + K I ++ G P+ YN+A + +
Sbjct: 215 SPQKLADRL---------KLLVLSKGIPILIG-APDAVPGGPYHYYNSAYLVDPGGEVVQ 264
Query: 115 IA-----IPGGITFKESDVL---------------SPGNSFSMFNNGICNIGLGICYDMR 154
+P G + S G + I ICY+
Sbjct: 265 RYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGPQVLKLPGGKIAPLICYESI 324
Query: 155 FPELAQVYRKKGCDLLIYP---GAFNMTTGPL--HWELLVRSRANDNQVYVAACSPAQDK 209
FP+L + ++G +LL+ F ++GP R+ N + A
Sbjct: 325 FPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRAT------- 377
Query: 210 NSDYIAWGHSTVVDP 224
N+ G S V+DP
Sbjct: 378 NT-----GISAVIDP 387
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 47.8 bits (114), Expect = 3e-06
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 130 SPGNSFSMFN-NGICNIGLGICYDMRFPELAQVYRKKGCDLLIYP---GAFNMTTGPLHW 185
S G + G I ICY+ FPEL + ++G +LL+ F + GP
Sbjct: 370 SRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQH 429
Query: 186 ELLVRSRA--NDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEETIVYAD 242
R RA + A N+ G S V+DP ILA F ++ A
Sbjct: 430 FQQARVRAVELGRPLVRAT-------NT-----GISAVIDPRGRILAQLPYFTRGVLDAT 477
Query: 243 I 243
+
Sbjct: 478 V 478
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase,
class 6 nitrilases). DCase hydrolyses
N-carbamyl-D-amino acids to produce D-amino acids. It is
an important biocatalyst in the pharmaceutical industry,
producing useful D-amino acids for example in the
preparation of beta-lactam antibiotics. This subgroup
belongs to a larger nitrilase superfamily comprised of
nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), this subgroup corresponds to
class 6. Members of this superfamily generally form
homomeric complexes, the basic building block of which
is a homodimer. Agrobacterium radiobacter DCase forms a
tetramer (dimer of dimers). Some DCases may form
trimers.
Length = 302
Score = 44.2 bits (105), Expect = 3e-05
Identities = 63/278 (22%), Positives = 104/278 (37%), Gaps = 64/278 (23%)
Query: 35 VRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS-------GITSKTLSNVAKEK 87
+ + +AA GA L+V PE + +++ E+ S ++ L + AKE
Sbjct: 28 IALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKEL 87
Query: 88 EI-FLVGGSIPELDNDKVYNAATVHLFDIAI----PGGITFKESDVLSPGNS-------- 134
I F +G EL D F+ +I G I K V PG+
Sbjct: 88 GIGFYLG--YAELTED----GGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPF 141
Query: 135 --------------FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTT 180
F +F +G+ IC D R+PE +V +G +L++ +N T
Sbjct: 142 QHLEKRYFEPGDLGFPVFRVPGGIMGMCICNDRRWPETWRVMGLQGVELVL--LGYNTPT 199
Query: 181 GPLHWE-----------LLVRSRANDNQVYVAACSPA-QDKNSDYIAWGHSTVVDPWANI 228
L +++ A N +V A + A + D I G S +V P I
Sbjct: 200 HNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGMEDGCDLI--GGSCIVAPTGEI 257
Query: 229 LATSQFEE-TIVYADIDLNTLNKVRDQIPTGKQKRYDL 265
+A + E ++ AD DL D G++ ++
Sbjct: 258 VAQATTLEDEVIVADCDL-------DLCREGRETVFNF 288
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase.
Length = 405
Score = 42.5 bits (100), Expect = 1e-04
Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 41/265 (15%)
Query: 38 IRKAADNGASLIVLPECFNCPYG----TKYFREYSEEIGSGITSKTLSNVAKEKEIFLVG 93
I A G +++ L E + P+ K + E++E + G ++K L +A++ + +V
Sbjct: 119 IDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTKFLQELARKYNMVIVS 177
Query: 94 GSIPELD---NDKVYNAATV--HLFDIA-------IPGGITFKESDVLSPGNS-FSMFNN 140
I E D + ++N A V + +I IP F ES GN+ +F
Sbjct: 178 -PILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFET 236
Query: 141 GICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLH---WELLVRSRANDNQ 197
I + ICY P + G +++ P A T G L W + R+ A N
Sbjct: 237 AFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSA---TVGDLSEPMWPIEARNAAIANS 293
Query: 198 VYVAACS-----------PAQDKNSDYIAWGH----STVVDPWANILAT-SQFEETIVYA 241
+V + + + D + +GH S P A+ + S++++ ++ +
Sbjct: 294 YFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLIS 353
Query: 242 DIDLNTLNKVRDQIPTGKQKRYDLY 266
D+DLN +++D+ RY++Y
Sbjct: 354 DMDLNLCRQLKDKWGFRMTARYEMY 378
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family.
This family represents a subfamily of a C-N
bond-cleaving hydrolases (see pfam00795). Members occur
as part of a cluster of genes in a probable biosynthetic
cluster that contains a radical SAM protein, an
N-acetyltransferase, a flavoprotein, several proteins of
unknown function, and usually a glycosyltransferase.
Members are closely related to a characterized aliphatic
nitrilase from Rhodopseudomonas rhodochrous J1, for
which an active site Cys was found at position 165
[Unknown function, Enzymes of unknown specificity].
Length = 301
Score = 41.6 bits (98), Expect = 2e-04
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 12 KSFKIALVQMT-VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPY----------- 59
+ + A VQ++ V L + I +AA G LIV PE F PY
Sbjct: 1 RIVRAAAVQISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETF-VPYYPYFSFVQPPV 59
Query: 60 --GTKYFREYSEEIG-SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFD 114
G ++ R Y + + G + ++ A+E + +V G + E D+ +YN +FD
Sbjct: 60 LMGKEHLRLYEQAVVVPGPVTDAVAEAAREHGMVVVLG-VNERDHGSLYNTQL--IFD 114
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS)
and similar proteins (class 5 nitrilases). This
subgroup includes mammalian-like beta-AS (EC 3.5.1.6,
also known as beta-ureidopropionase or
N-carbamoyl-beta-alanine amidohydrolase). This enzyme
catalyzes the third and final step in the catabolic
pyrimidine catabolic pathway responsible for the
degradation of uracil and thymine, the hydrolysis of
N-carbamyl-beta-alanine and
N-carbamyl-beta-aminoisobutyrate to the beta-amino
acids, beta-alanine and beta-aminoisobutyrate
respectively. This subgroup belongs to a larger
nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 5. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer. Beta-ASs
from this subgroup are found in various oligomeric
states, dimer (human), hexamer (calf liver), decamer
(Arabidopsis and Zea mays), and in the case of
Drosophila melanogaster beta-AS, as a homooctamer
assembled as a left-handed helical turn, with the
possibility of higher order oligomers formed by adding
dimers at either end. Rat beta-AS changes its oligomeric
state (hexamer, trimer, dodecamer) in response to
allosteric effectors. Eukaryotic Saccharomyces kluyveri
beta-AS belongs to a different superfamily.
Length = 363
Score = 37.3 bits (87), Expect = 0.006
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 35/192 (18%)
Query: 37 FIRKAADNGASLIVLPECFNCPYG----TKY-FREYSEEIGSGITSKTLSNVAKEKEIFL 91
I AA G ++I E + P+ K + E++E G T+K +AK+ + +
Sbjct: 95 IIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVI 154
Query: 92 VGGSIPELD---NDKVYNAATV--------------HLFDIAIPGGITFKESDVLSPGNS 134
V I E D D ++N A V H IP F ES GN+
Sbjct: 155 V-SPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNH-----IPRVGDFNESTYYMEGNT 208
Query: 135 -FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLH---WELLVR 190
+F I + ICY P +Y G +++ P A T G L W + R
Sbjct: 209 GHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSA---TVGALSEPMWPIEAR 265
Query: 191 SRANDNQVYVAA 202
+ A N +
Sbjct: 266 NAAIANSYFTVG 277
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional.
Length = 333
Score = 36.2 bits (84), Expect = 0.011
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 145 IGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLH--WELLVRSRANDNQVYVAA 202
+ + IC+D FPE+A+ KG +++I + + + W L RS A N +Y A+
Sbjct: 160 LAVCICHDGMFPEMAREAAYKGANVMIRISGY---STQVREQWILTNRSNAWQNLMYTAS 216
Query: 203 -CSPAQDKNSDYIAWGHSTVVDPWANILA 230
D Y G V + L
Sbjct: 217 VNLAGYDGVFYYF--GEGQVCNFDGTTLV 243
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.
Length = 505
Score = 36.0 bits (84), Expect = 0.017
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 129 LSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMT-------- 179
S G + ICY++ FPE + ++G DLL+ N++
Sbjct: 358 FSRGPYVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLL-----NISNDAWFGDS 412
Query: 180 TGPL-HWELLVRSRANDNQVYVA-ACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEE 236
GP H++ + R RA + + A N+ G + V+DP I+A QF E
Sbjct: 413 IGPYQHFQ-MARMRALELGRPLIRAT------NT-----GITAVIDPLGRIIAQLPQFTE 460
Query: 237 TIVYADI 243
++ +
Sbjct: 461 GVLDGTV 467
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 31.2 bits (71), Expect = 0.57
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 10 TAKSFKIALVQMT---VGKDKNKNLENAVRFIRKAADNGASLIVLPECFNC 57
+F+ V+MT +N ++ + +AA NG I++ EC
Sbjct: 158 QTGTFRPRFVEMTYEDATSPENLDVNHPNNIFVQAAKNGPIAIIMDECMEK 208
>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4
nitrilases). These secondary amidases participate in
vitamin recycling. Biotinidase (EC 3.5.1.12) has both a
hydrolase and a transferase activity. It hydrolyzes
free biocytin or small biotinyl-peptides produced
during the proteolytic degradation of biotin-dependent
carboxylases, to release free biotin (vitamin H), and
it can transfer biotin to acceptor molecules such as
histones. Biotinidase deficiency in humans is an
autosomal recessive disorder characterized by
neurological and cutaneous symptoms. This subgroup
includes the three human vanins, vanin1-3. Vanins are
ectoenzymes, Vanin-1, and -2 are membrane associated,
vanin-3 is secreted. They are pantotheinases (EC
3.5.1.92, pantetheine hydrolase), which convert
pantetheine, to pantothenic acid (vitamin B5) and
cysteamine (2-aminoethanethiol, a potent anti-oxidant).
They are potential targets for therapeutic intervention
in inflammatory disorders. Vanin-1 deficient mice
lacking free cysteamine are less susceptible to
intestinal inflammation, and expression of vanin-1 and
-3 is induced as part of the inflammatory-regenerative
differentiation program of human epidermis. This
subgroup belongs to a larger nitrilase superfamily
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified
in the literature based on global and structure based
sequence analysis into thirteen different enzyme
classes (referred to as 1-13), this subgroup
corresponds to class 4. Members of this superfamily
generally form homomeric complexes, the basic building
block of which is a homodimer.
Length = 299
Score = 31.1 bits (71), Expect = 0.58
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 28 NKNLENAVRFIRKAADNGASLIVLPE 53
KNL+ I+ AA GA +IV PE
Sbjct: 23 EKNLDIYEEIIKSAAKQGADIIVFPE 48
>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats. These represent a subfamily
of TPR (tetratricopeptide repeat) sequences.
Length = 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 24 GKDKNKNLENAVRFIRKAADNG 45
G K+LE A+ + +KAA+ G
Sbjct: 14 GLGVPKDLEKALEYYKKAAELG 35
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
Length = 679
Score = 30.2 bits (69), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 30 NLENAVRFIRKAADNGASLIVLPE 53
N + R+AAD+G +L V PE
Sbjct: 30 NAARILALARRAADDGVALAVFPE 53
>gnl|CDD|173056 PRK14592, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 165
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 73 SGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPG 132
SGI S+T + + + K++++ +P L+ D+ Y + + + ++ + + G
Sbjct: 61 SGINSRTEAELLRNKKLYVERSKLPNLNEDEFYQSDLIGM-EVKLEDNTIY--------G 111
Query: 133 NSFSMFNNGICNI 145
++N G C+I
Sbjct: 112 YIKKIYNFGSCDI 124
>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed.
Length = 418
Score = 29.9 bits (68), Expect = 1.4
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 15 KIALVQMTVGKDKNKNLENAVRF-------IRKAADNGASLIVLPE 53
I LV + +D + EN I KA D LIVLPE
Sbjct: 196 NIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPE 241
>gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases. Peptidase M20 family,
dipeptidase-like subfamily. This group contains a large
variety of enzymes, including cytosolic nonspecific
dipeptidase (CNDP), Xaa-methyl-His dipeptidase
(anserinase), canosinase, DUG2 type proteins, as well as
many proteins inferred by homology to be dipeptidases.
These enzymes have been shown to act on a wide range of
dipeptides, but not larger peptides. For example,
anserinase mainly catalyzes the hydrolysis of
N-alpha-acetylhistidine while carnosinase degrades
beta-alanyl-L-histidine. Substrates of CNDP are varied
and not limited to Xaa-His dipeptides. DUG2 proteins
contain a metallopeptidase domain and a large N-terminal
WD40 repeat region, and are involved in the alternative
pathway of glutathione degradation.
Length = 428
Score = 29.1 bits (66), Expect = 2.3
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 39 RKAADNG-------ASLIVLPECFNCPYGTKYFREYSEEIGSGITSKTLSN-VAKEKEIF 90
R AAD+ A+L L + P G K E EEIGS L + + E+
Sbjct: 101 RGAADDKGGIAAHLAALRALGGLGDLPVGVKVIIEGEEEIGSP----GLEALLEEHPELL 156
>gnl|CDD|224551 COG1636, COG1636, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 204
Score = 28.5 bits (64), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 149 ICYDMRFPELAQVYRKKGCD-----LLIYP 173
+C+DMR + A+ ++ G D LLI P
Sbjct: 93 MCFDMRLEKTAKKAKELGFDVFTTTLLISP 122
>gnl|CDD|185563 PTZ00337, PTZ00337, surface protease GP63; Provisional.
Length = 567
Score = 29.1 bits (65), Expect = 3.1
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 142 ICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVA 201
I GLG+C + P G D+++Y F T+GP W + +D + + A
Sbjct: 157 IPRTGLGMCDNFTIPHKHHTVGVAGADMILYANIFP-TSGPAAWAIPC-FLLDDGRPFAA 214
Query: 202 A 202
A
Sbjct: 215 A 215
>gnl|CDD|217180 pfam02677, DUF208, Uncharacterized BCR, COG1636.
Length = 176
Score = 28.3 bits (64), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 149 ICYDMRFPELAQVYRKKGCD-----LLIYP 173
CYDMR E AQ ++ G D LLI P
Sbjct: 87 YCYDMRLEETAQYAKEHGFDAFTTTLLISP 116
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional.
Length = 371
Score = 28.6 bits (64), Expect = 4.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 62 KYFREYSEEIGSGITSKTLSNVAKEKEIFL--VGGSIPELDNDKVYNAATVHLFDI 115
KY RE S +I G + L ++ + E + G IP +D Y+A H+ I
Sbjct: 268 KYLREMSRKITKGTGREELFEMSVKIEKRMKEEKGLIPNVD---FYSATVYHVMGI 320
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 27.9 bits (62), Expect = 8.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 62 KYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIP-ELDNDKV 104
RE +EE+ I S TL +VA I L SI ELD + +
Sbjct: 589 ATDREKAEEVAKKIESLTLGDVATSIAIDLWTQSIKVELDEETL 632
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 27.3 bits (61), Expect = 8.7
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 19/71 (26%)
Query: 130 SPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELL- 188
+ G + MF LG + + P + + +L Y AF M+ GP+ W LL
Sbjct: 343 ALGMAIGMF-------SLGTAFYTQAPGIVAL-----LSMLFYVAAFAMSWGPVCWVLLS 390
Query: 189 ------VRSRA 193
+R +A
Sbjct: 391 EIFPNAIRGKA 401
>gnl|CDD|233120 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
This model represents a set of proteins with extensive
C-terminal homology to the ATP-dependent protease La,
product of the lon gene of E. coli. The model is based
on a seed alignment containing only archaeal members,
but several bacterial proteins match the model well.
Because several species, including Thermotoga maritima
and Treponema pallidum, contain both a close homolog of
the lon protease and nearly full-length homolog of the
members of this family, we suggest there may also be a
functional division between the two families. Members of
this family from Pyrococcus horikoshii and Pyrococcus
abyssi each contain a predicted intein [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 608
Score = 27.5 bits (61), Expect = 8.8
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 217 GHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKR 262
G S + A +L + E+ +VY + + + ++ ++P G+ +
Sbjct: 49 GKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIV-EVPAGEGRE 93
>gnl|CDD|225356 COG2764, PhnB, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 136
Score = 26.5 bits (59), Expect = 9.6
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 1 MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYG 60
+ M + +L +E+ +AA GA++++ E + +G
Sbjct: 62 LSDAFPDMGATEGGGTSLSLDL-------YVEDVDAVFERAAAAGATVVMPLE--DTFWG 112
Query: 61 TKYFR 65
+Y +
Sbjct: 113 DRYGQ 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,635,386
Number of extensions: 1284452
Number of successful extensions: 1343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 63
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)