RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17819
(272 letters)
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Length = 276
Score = 408 bits (1052), Expect = e-146
Identities = 154/274 (56%), Positives = 196/274 (71%), Gaps = 15/274 (5%)
Query: 12 KSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEI 71
+F++AL+Q+ V K+ NL A +R+AA GA+++ LPECFN PYGT YF +Y+E+I
Sbjct: 2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61
Query: 72 GSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HLFDIAI 117
G +++ LS VAKE I+L+GGSIPE D K+YN +V HLFDI +
Sbjct: 62 P-GESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 118 PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFN 177
PG ITF+ES LSPG+SFS F+ C +GLGICYDMRF ELAQ+Y ++GC LL+YPGAFN
Sbjct: 121 PGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFN 180
Query: 178 MTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
+TTGP HWELL R+RA DNQVYVA SPA+D + Y+AWGHSTVVDPW +L + EET
Sbjct: 181 LTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEET 240
Query: 238 IVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
I+Y+DIDL L ++R QIP KQKR DLY V +K
Sbjct: 241 ILYSDIDLKKLAEIRQQIPILKQKRADLYTVESK 274
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics,
four layer sandwich, PSI, protein structure initiative;
2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Length = 291
Score = 391 bits (1006), Expect = e-138
Identities = 131/287 (45%), Positives = 171/287 (59%), Gaps = 26/287 (9%)
Query: 8 MSTA----KSFKIALVQMTV-GKDKNKNLENAVRFIRKAADN--GASLIVLPECFNCPYG 60
MS + + K+ALVQ++ DK NL+ A FI +A L+VLPECFN PY
Sbjct: 1 MSASKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYS 60
Query: 61 TKYFREYSEEI---GSGITSKTLSNVAKEKEIFLVGGSIPEL--DNDKVYNAATV----- 110
T FR+YSE I + + LSN+A + +I LVGG+IPEL DK+YN + +
Sbjct: 61 TDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDG 120
Query: 111 ---------HLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQV 161
HLFD+ IP GI+F ES+ LSPG + + G+GICYDMRFPELA +
Sbjct: 121 KLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAML 180
Query: 162 YRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTV 221
+KG +IYP AFN TGPLHW LL RSRA DNQVYV CSPA++ S Y A+GHS V
Sbjct: 181 SARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIV 240
Query: 222 VDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDV 268
VDP I+A + E I+YA++D + R +P KQ+R+D+Y
Sbjct: 241 VDPRGKIVAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRRFDVYSD 287
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 385 bits (992), Expect = e-134
Identities = 92/291 (31%), Positives = 139/291 (47%), Gaps = 21/291 (7%)
Query: 1 MFSQI--RKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCP 58
M S + R M+T + IA+ QMT D KN + A I +A + ++ LPECF+
Sbjct: 1 MLSTVFRRTMATGR-HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI 59
Query: 59 YGTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL---DNDKVYNAATV----- 110
K + + +A++ I+L G + D +N +
Sbjct: 60 GLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDG 119
Query: 111 ---------HLFDIAIPGGITFKESDVLSPGNSF-SMFNNGICNIGLGICYDMRFPELAQ 160
HLFD+ IPG + ES+ G + I +GL ICYD+RFPEL+
Sbjct: 120 VTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSL 179
Query: 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220
RK+G LL +P AF + TG HWE L+R+RA +NQ YV A + N ++GHS
Sbjct: 180 WNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSM 239
Query: 221 VVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
VVDPW ++A + +A+IDL+ ++ +R+ P +R DLY +
Sbjct: 240 VVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHRRSDLYTLHIN 290
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 338 bits (869), Expect = e-118
Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 29/277 (10%)
Query: 8 MSTAKSFKIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE 66
+ K+ + Q+ + D +KN ++ K + ++VLPE +N Y ++ E
Sbjct: 15 VPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNE 74
Query: 67 YSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HL 112
++ G + + ++A++ ++ +V GS+ + N++++N A HL
Sbjct: 75 KADNNL-GQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHL 133
Query: 113 FDIAIPGGITFKESDVLSPGNSFSM--FNNGICNIGLGICYDMRFPELAQVYRKKGCDLL 170
+ +E + L+ G + + + ICYD+RFPEL + + G +
Sbjct: 134 VPM-------LREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIA 186
Query: 171 IYPGAFNMTTGPLHWELLVRSRANDNQVYVAAC-SPAQDKNSDYIAWGHSTVVDPWANIL 229
Y + M+ HW L+++RA +N ++V S D N++Y GHS V++P +++
Sbjct: 187 FYVAQWPMSRLQ-HWHSLLKARAIENNMFVIGTNSTGFDGNTEY--AGHSIVINPNGDLV 243
Query: 230 ATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLY 266
I+ D++LN + + R+ IP K + DLY
Sbjct: 244 GELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLY 280
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 290 bits (744), Expect = 2e-97
Identities = 51/314 (16%), Positives = 111/314 (35%), Gaps = 53/314 (16%)
Query: 1 MFSQIRKMSTAKSFKIALVQMTVG--------KDKNKNLENAVRFIRKAADNGASLIVLP 52
++ + + ++ +Q ++ K + I+ AA+ G +++
Sbjct: 60 FTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQ 119
Query: 53 ECFNCPYG------TKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL--DNDKV 104
E + P+ + E++EE +G T+K L+ +AK + ++ + + +
Sbjct: 120 EAWTMPFAFCTREKFPWC-EFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETI 178
Query: 105 YNAATV--------------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGI 149
+N A V H+ + F ES GN+ +F + + I
Sbjct: 179 WNTAVVISNSGRYLGKHRKNHIPRV-----GDFNESTYYMEGNTGHPVFETEFGKLAVNI 233
Query: 150 CYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPA--- 206
CY P+ ++ G +++ P A W + R+ A N + +
Sbjct: 234 CYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTE 293
Query: 207 ------------QDKNSDYIAWGHSTVVDPWANILA-TSQFEETIVYADIDLNTLNKVRD 253
+ +G S V P + S+ ++ ++ ++DLN +V+D
Sbjct: 294 QFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKD 353
Query: 254 QIPTGKQKRYDLYD 267
+R LY
Sbjct: 354 FWGFRMTQRVPLYA 367
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 264 bits (677), Expect = 4e-89
Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 36/273 (13%)
Query: 15 KIALVQMTVGK-DKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY---FREYSEE 70
K+A VQM + +KN A + I++A+ GA L+VLPE F+ Y + E +++
Sbjct: 3 KVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQK 62
Query: 71 IGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLFDIAI 117
I G T+ L +VA++ +++V G+ E D D +YN+A V HLF
Sbjct: 63 IPEGETTTFLMDVARDTGVYIVAGT-AEKDGDVLYNSAVVVGPRGFIGKYRKIHLF---- 117
Query: 118 PGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAF 176
++E PG+ F +F+ G +G+ IC+D FPE A+ KG D++ +P
Sbjct: 118 -----YREKFFFEPGDLGFRVFDLGFMKVGVMICFDWFFPESARTLALKGADVIAHPANL 172
Query: 177 NMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT-SQFE 235
M + + RA +N+VY + G S + P A +L+ S+ E
Sbjct: 173 VMP----YAPRAMPIRALENKVYTVTADRV-GEERGLKFIGKSLIASPKAEVLSMASETE 227
Query: 236 ETIVYADIDLNTLNKVR--DQIPTGKQKRYDLY 266
E + A+IDL+ + R D K +R + Y
Sbjct: 228 EEVGVAEIDLSLVRNKRINDLNDIFKDRREEYY 260
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 263 bits (674), Expect = 2e-88
Identities = 54/276 (19%), Positives = 99/276 (35%), Gaps = 26/276 (9%)
Query: 8 MSTAKSFKIALVQMTV-GKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE 66
+ +IAL+Q T D NL+ +A++ GA L++ PE F Y
Sbjct: 15 VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICA 74
Query: 67 YSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV--------------HL 112
L +A+++ I LV ++ A + L
Sbjct: 75 QVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQL 134
Query: 113 FDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLI 171
+ +E PG + + G + L +CYD+ FPE+ + +G L++
Sbjct: 135 YG--------PEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVL 186
Query: 172 YPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT 231
P A +L+ +RA +N + +A + + G S VV P L
Sbjct: 187 VPTALAGDETS-VPGILLPARAVENGITLAYANHC-GPEGGLVFDGGSVVVGPAGQPLGE 244
Query: 232 SQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267
E ++ D+ + + D + +R +L+
Sbjct: 245 LGVEPGLLVVDLPDQSQDAGSDSADYLQDRRAELHR 280
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 251 bits (642), Expect = 2e-83
Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 43/303 (14%)
Query: 12 KSFKIALVQM---TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFRE-- 66
+ +A+ Q + + + + + + KAA GA+ IV PE + ++
Sbjct: 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61
Query: 67 -----YSEEIGSGITSKTLSNVAKEKEIFLVGGS---IPELDNDKVYNAATV-------- 110
+ E G + L A E I G + E + +N + +
Sbjct: 62 AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121
Query: 111 ------HLFD---IAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQ 160
HL E PG+ F +++ +G+ I D R+PE +
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWR 181
Query: 161 VYRKKGCDLLIYPGAFNMTTGPL---------HWELLVRSRANDNQVYVAACSPAQDKNS 211
V +G +++ P+ H L +++ + N + AA A
Sbjct: 182 VMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKA-GMEE 240
Query: 212 DYIAWGHSTVVDPWANILA-TSQFEETIVYADIDLNTLNKVRDQIPT-GKQKRYDLYDVT 269
+ + GHS +V P I+A T+ E+ ++ A +DL+ ++R+ I + ++ Y +
Sbjct: 241 NCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLI 300
Query: 270 AKL 272
A+L
Sbjct: 301 AEL 303
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 240 bits (615), Expect = 1e-79
Identities = 53/265 (20%), Positives = 90/265 (33%), Gaps = 32/265 (12%)
Query: 12 KSFKIALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEE 70
+I+LVQ + D N + + A + L++LPE F + + + +
Sbjct: 2 HDLRISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGFSNEAIDKAEDM 60
Query: 71 IGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HLFDIAI 117
G T + A + G S+ V+N HLF
Sbjct: 61 --DGPTVAWIRTQAARLGAAITG-SVQLRTEHGVFNRLLWATPDGALQYYDKRHLFRFG- 116
Query: 118 PGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELA------QVYRKKGCDLLI 171
E + G I +CYD+RFP + + DL +
Sbjct: 117 ------NEHLRYAAGRERLCVEWKGWRINPQVCYDLRFPVFCRNRFDVERPGQLDFDLQL 170
Query: 172 YPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILAT 231
+ A + W+ L+R+RA +N +VAA + + G S V+D
Sbjct: 171 FV-ANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQVE 229
Query: 232 SQFEETIVYADIDLNTLNKVRDQIP 256
+ +E +V I L + R + P
Sbjct: 230 IREQEQVVTTTISAAALAEHRARFP 254
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 240 bits (613), Expect = 2e-78
Identities = 58/288 (20%), Positives = 103/288 (35%), Gaps = 43/288 (14%)
Query: 9 STAKSFKIALVQMTV-----GKDKNKNLENAVRFIR--KAADNGASLIVLPECFNCPYGT 61
+ F +A +Q V KD + N+E+ +R + KA G LI+ PE T
Sbjct: 9 KPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNT 68
Query: 62 KYFR--EYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDND---KVYNAATV------ 110
+ E+ ++ G ++ + KE +++ V SI E + D YN A +
Sbjct: 69 AKWLSEEFLLDVP-GKETELYAKACKEAKVYGVF-SIMERNPDSNKNPYNTAIIIDPQGE 126
Query: 111 --------HLFDIAIPGGITFKESDVLSPGN-SFSMFN-NGICNIGLGICYDMRFPELAQ 160
++ + PG+ + G + + IC+D PELA+
Sbjct: 127 IILKYRKLFPWN----------PIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAR 176
Query: 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220
KGC++ I ++ W L RS A N +Y + + A N + +G
Sbjct: 177 EAAYKGCNVYIRISGYSTQVND-QWILTNRSNAWHNLMYTVSVNLAGYDN-VFYYFGEGQ 234
Query: 221 VVDPWANILAT-SQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267
+ + L + IV +I + R +
Sbjct: 235 ICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHR 282
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 233 bits (595), Expect = 8e-76
Identities = 50/288 (17%), Positives = 89/288 (30%), Gaps = 42/288 (14%)
Query: 9 STAKSFKIALVQM-----TVGKDKNKNLENAVRFIR--KAADNGASLIVLPECFN--CPY 59
S+ + +A+V + N I K G L+V PE Y
Sbjct: 8 SSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMY 67
Query: 60 GTKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPEL----DNDKVYNAATV----- 110
E + I G ++ S ++ ++ V E YN +
Sbjct: 68 DPAEMMETAVAIP-GEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNG 126
Query: 111 ---------HLFDIAIPGGITFKESDVLSPGNS-FSMFNNGICNIGLGICYDMRFPELAQ 160
+ + PG + I L I D +PE+ +
Sbjct: 127 EIVQKYRKIIPWC----------PIEGWYPGGQTYVSEGPKGMKISLIIXDDGNYPEIWR 176
Query: 161 VYRKKGCDLLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220
KG +L++ + M ++ ++ A N YVA + A + Y +GHS
Sbjct: 177 DCAMKGAELIVRCQGY-MYPAKDQQVMMAKAMAWANNCYVAVANAA-GFDGVYSYFGHSA 234
Query: 221 VVDPWANILA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYD 267
++ L + E I YA + L+ + R + L+
Sbjct: 235 IIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQNHLFKILHR 282
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 92.8 bits (231), Expect = 2e-21
Identities = 69/292 (23%), Positives = 97/292 (33%), Gaps = 38/292 (13%)
Query: 8 MSTAKSFKIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT---- 61
MS ++AL Q+ TVG D N E +R+ R +A+ GA L+ PE Y
Sbjct: 1 MS--LQLRLALNQIDSTVG-DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLA 57
Query: 62 --KYFREYSEEIGSGITSKTLSNVAKEKEIFLVG--------GSIPELDNDKVYNAATVH 111
F E S + ++ E + LVG NAA V
Sbjct: 58 LRSSFVEASRTALRELAARLAEEGFGELPV-LVGYLDRSESAQPKYGQPAGAPRNAAAV- 115
Query: 112 LFDIAIPGGIT---------FKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPE-LAQV 161
L + F E PG++ + +I L IC D+
Sbjct: 116 LHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPA 175
Query: 162 YRKKGCDLLIYPGAFNMTTGPLHW-ELLVRSRANDNQVYVAACSP--AQDKNSDYIAWGH 218
R G LL+ A LVR RA + A + QD + + G
Sbjct: 176 ARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQD---ELVFDGD 232
Query: 219 STVVDPWANILA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYDLYDVT 269
S VVD ++A QF E V D+DL R D ++
Sbjct: 233 SIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVIS 284
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 83.3 bits (206), Expect = 2e-18
Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 35/265 (13%)
Query: 11 AKSFKIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTK------ 62
+ +IAL Q+ TVG D N+ V + A D GA ++ PE Y +
Sbjct: 4 SMKTRIALAQLNVTVG-DFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRP 62
Query: 63 YFREYSEEIGSGITSKTLSN-----------VAKEKEIFLVGGSIPELDNDKVYNAATVH 111
F S+ + + ++ A + + YNAA++
Sbjct: 63 AFYAASDAALAELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASL- 121
Query: 112 LFDIAIPGGIT---------FKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVY 162
+ + G F E + + +F G+ IC D+ AQ+
Sbjct: 122 IVGGEVAGTYRKQDLPNTEVFDEKRYFATDAAPYVFELNGVKFGVVICEDVWHASAAQLA 181
Query: 163 RKKGCDLLIYPGA--FNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHST 220
+ G +LI P ++M + ++L R+R + + + + + + G S
Sbjct: 182 KAAGAQVLIVPNGSPYHMNKDAVRIDIL-RARIRETGLPMVYVN-LVGGQDELVFDGGSF 239
Query: 221 VVDPWANILATS-QFEETIVYADID 244
V+D ++A QFEE + D
Sbjct: 240 VLDGAGELVAKMPQFEEGNAIVEFD 264
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 71.3 bits (175), Expect = 3e-14
Identities = 61/300 (20%), Positives = 102/300 (34%), Gaps = 53/300 (17%)
Query: 15 KIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYG------TKYFRE 66
++A T+G D N + + R D+GA+L V PE Y +
Sbjct: 14 RVAACTHHTTIG-DPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLD 72
Query: 67 YSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATV-------------HL- 112
E+ + +++ A + +VG P ++YN A V +L
Sbjct: 73 AVEDALLDLVTES----ADLLPVLVVG--APLRHRHRIYNTAVVIHRGAVLGVVPKSYLP 126
Query: 113 ----FD--------IAIPGGITFKESDV-LSPGNSFSMFNNGICNIGLGICYDMRFPEL- 158
F G I +DV F+ + + + I DM P
Sbjct: 127 TYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEIAEDMFVPMPP 186
Query: 159 AQVYRKKGCDLLIYPGAFNMTTGPLHW-ELLVRSRAND-NQVYV-AACSPAQDKNSDYIA 215
+ G +L +T G LL RS + YV AA + + +A
Sbjct: 187 SAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGES--TTDLA 244
Query: 216 W-GHSTVVDPWANILATS-QFEET--IVYADIDLNTLNKVRDQIPTGKQKRYDLYDVTAK 271
W G + + + +LA S +F + AD+D L R ++ T R ++T
Sbjct: 245 WDGQTMIWEN-GALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTES 303
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 66.9 bits (164), Expect = 1e-12
Identities = 42/301 (13%), Positives = 81/301 (26%), Gaps = 75/301 (24%)
Query: 8 MSTAKSFKIALVQM--TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGT---- 61
MS + +I + T D N++N + I +A + ++ LPE YG
Sbjct: 1 MSL-STIRIGGAAVNQTPI-DWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLF 58
Query: 62 --KYFREYSEEIGSGITSKTLSNVAKE-KEIFLVGGSIPELDNDKVYNAATV-------- 110
+ E + E +A +I + G P YN +
Sbjct: 59 LTDWVAETAIE--------YCFEIAASCTDITVSLGL-PMRIAGITYNCVCLVENGIVKG 109
Query: 111 -----HL-----FD---------IAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICY 151
L + + +++ IG IC
Sbjct: 110 FSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLYNV--KDAR-IGFEICE 166
Query: 152 DMRFP-----ELAQVYRKKGCDLLIYPGAFNMTTGPLHW-ELLVRSRANDNQ---VYVAA 202
D + KG L++ P A + G LV + VY
Sbjct: 167 DAWRTDRVGIRHYE----KGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANL 222
Query: 203 --CSPAQDKNSDYIAWGHSTVVDPWANILA-TSQF---EETIVYADIDLNTLNKVRDQIP 256
+ + + ++ ++ + ++YADI ++ +
Sbjct: 223 LGNE------AGRMIYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLT 276
Query: 257 T 257
Sbjct: 277 Q 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-05
Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 62/208 (29%)
Query: 1 MFSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVL--PECFNCP 58
M S I ++ + VQ V K N +L + + + NGA +V+ P P
Sbjct: 338 MLS-ISNLTQEQ------VQDYVNKT-NSHLPAGKQ-VEISLVNGAKNLVVSGP-----P 383
Query: 59 ---YG-TKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFD 114
YG R+ G + S + K F + F
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFS---ERKLKF-------------------SNRFL 421
Query: 115 -IAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGIC-YDMRFPELAQVYR-KKGCDL-- 169
+A P F S +L P + + N + + D++ P VY G DL
Sbjct: 422 PVASP----F-HSHLLVP--ASDLINKDLVKNNVSFNAKDIQIP----VYDTFDGSDLRV 470
Query: 170 ---LIYPGAFNM-TTGPLHWELLVRSRA 193
I + P+ WE + +A
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 42.0 bits (98), Expect = 2e-04
Identities = 57/324 (17%), Positives = 85/324 (26%), Gaps = 148/324 (45%)
Query: 21 MTVGKDKNKNLENAVRFIRKAADN------GASL--IVL--PEC----FNCPYGTKYFRE 66
M G D K A + + ADN G S+ IV+ P F G K RE
Sbjct: 1631 M--GMDLYKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIRE 1686
Query: 67 -YS------------------EEIGSGITSKTLSNVAKEKE-----------IFLVG--- 93
YS +EI TS T + EK + L+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQFTQPALTLMEKAA 1743
Query: 94 -------GSIPELDNDKV--------YNAATVHLFDIAIPGGITFKESDVLS-------- 130
G IP D Y A L ++ ++ ++
Sbjct: 1744 FEDLKSKGLIPA---DATFAGHSLGEYAA----L--ASLADVMSI--ESLVEVVFYRGMT 1792
Query: 131 -----PGNSFSMFNNGIC-----NIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTT 180
P + N G+ + + + +V ++ G + I
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI--------- 1843
Query: 181 GPLHWELLVRSRANDN---QVYVAACSPAQDKNSDYIAWGHSTVVDPWANILATSQFEET 237
N N Q YVAA G +D N+L
Sbjct: 1844 ------------VNYNVENQQYVAA--------------GDLRALDTVTNVL------NF 1871
Query: 238 IVYADIDLNTLN------KVRDQI 255
I ID+ L +V +
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 42.0 bits (98), Expect = 2e-04
Identities = 41/262 (15%), Positives = 75/262 (28%), Gaps = 86/262 (32%)
Query: 3 SQIRKMSTAKSFKIALVQMT---VGKDKNK-NLENAVRFI------RKAADNGASLIVLP 52
SQ+++ F L + T D+ E +F+ + + G VL
Sbjct: 31 SQLQE-----QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 53 ECFNCPYGTKYF-REY--SEEI---GSGITSKTLSNVAKEKEIF--------LVGGSIPE 98
C F Y +I + + + + + K KE+ + +
Sbjct: 86 LCLT------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 99 LDNDKVYNAA---TVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRF 155
N ++ A L AI GG GN+ Y F
Sbjct: 140 KSNSALFRAVGEGNAQLV--AIFGG----------QGNTDD--------------Y---F 170
Query: 156 PELAQVYRKKGCDLLIYP---GAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSD 212
EL +Y+ Y G + E L+R+ + +V+ +
Sbjct: 171 EELRDLYQ-------TYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGL--------N 214
Query: 213 YIAWGHSTVVDPWANILATSQF 234
+ W + P + L +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPI 236
Score = 28.1 bits (62), Expect = 3.8
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 22/85 (25%)
Query: 16 IALVQMTVGKDKNKNLENAVRFI--RKAADNGASL-IVLPECFNCPYGTKYFREYSEEIG 72
IA+ V + + A++++ R G + IV +N +Y +
Sbjct: 1810 IAINPGRVAASFS---QEALQYVVERVGKRTGWLVEIV---NYNVE-NQQY-------VA 1855
Query: 73 SGITS--KTLSNVA---KEKEIFLV 92
+G T++NV K ++I ++
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDII 1880
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 42/289 (14%), Positives = 70/289 (24%), Gaps = 114/289 (39%)
Query: 9 STAKSFKIALVQ------MTVGKDKNKN--LENAVRFIRKAADNGASLIVLPECFNCPYG 60
S+K+ + + + LE + + + N S N
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLR 226
Query: 61 TKYFREYSEEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDI----- 115
+ + + SK N LV L N V NA + F++
Sbjct: 227 IHSIQAELRRL---LKSKPYENC------LLV------LLN--VQNAKAWNAFNLSCKIL 269
Query: 116 ----------AIPGGITF-----KESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQ 160
+ T S L+P S+ D R +L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---------YLDCRPQDL-- 318
Query: 161 VYRKKGCDLLIYPGAFNMTTGPLH----WELLVRSRANDNQVYVAACSPAQDKNSDYIA- 215
++ TT P E + D +A
Sbjct: 319 --PREVL-----------TTNPRRLSIIAESI----------------------RDGLAT 343
Query: 216 WGHSTVVDPWANILATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRYD 264
W D W ++ + I + LN L P +K +D
Sbjct: 344 W------DNWKHVN-CDKLTTII---ESSLNVLE------PAEYRKMFD 376
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.3
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 26 DKN--KNLENAVRFIRKAADNGASLIV 50
+K K L+ +++ A D+ +L +
Sbjct: 18 EKQALKKLQASLKLY--ADDSAPALAI 42
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 2 FSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAAD----NGASLIVL 51
I+ ++A V D +LE+A+ + K A GA ++VL
Sbjct: 551 LQAIKTGQ----LQVAEVSTLYDLDGVNSLEDALTNLVKTAIATVQAGAEILVL 600
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 27.3 bits (61), Expect = 6.2
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 4/63 (6%)
Query: 8 MSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY 67
+ AK + + + +++ A +G +I E G
Sbjct: 138 IEQAKKWG----HPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNE 193
Query: 68 SEE 70
+
Sbjct: 194 THR 196
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB,
inhibitor, TIM barrel, sialic acid synthase, transfera;
HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A
1xuz_A* 1xuu_A 3cm4_A
Length = 349
Score = 27.1 bits (61), Expect = 6.8
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 8 MSTAKSFKIALVQMTVGKDK------------NKNLENAVRFIRKAADNGA 46
M FKI +VG + +L+ A + A + GA
Sbjct: 1 MQNNNEFKIG--NRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGA 49
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania
major} SCOP: d.92.1.3
Length = 478
Score = 27.0 bits (58), Expect = 7.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 139 NNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPL 183
+ ++ IC D + P+ D ++Y + G L
Sbjct: 81 KWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVL 125
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase;
2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Length = 283
Score = 26.9 bits (59), Expect = 8.0
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 85 KEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICN 144
LV G+IP + Y L A +T E S + G C+
Sbjct: 69 NGNFFLLVEGAIP-TAKEGRYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCS 127
Query: 145 IGLGICYDMRFPELAQ 160
GI ++
Sbjct: 128 AYGGIPAAEGNVTGSK 143
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.1 bits (61), Expect = 8.7
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 3 SQIRKMSTAKSFKIALVQMTVGKDKNKN-LENAVRFIRKAAD----NGASLIVL 51
++ R M A + T D L +A+R IR+ + GA+ ++L
Sbjct: 553 AEFRAMRDYMGDTAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVIL 606
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 26.9 bits (60), Expect = 9.7
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 34 AVRFIRKAADNGASLIV 50
++ A G LIV
Sbjct: 179 QFNDLKAALKRGCKLIV 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,147,564
Number of extensions: 245615
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 39
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)