RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17819
(272 letters)
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 156 bits (393), Expect = 5e-47
Identities = 85/267 (31%), Positives = 129/267 (48%), Gaps = 19/267 (7%)
Query: 8 MSTAKSFKIALVQMTVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREY 67
M+T + IA+ QMT D KN + A I +A + ++ LPECF+ K +
Sbjct: 1 MATGR-HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 59
Query: 68 SEEIGSGITSKTLSNVAKEKEIFLVGGSIPELD---NDKVYNAATV-------------- 110
+ +A++ I+L G + D +N +
Sbjct: 60 LAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKL 119
Query: 111 HLFDIAIPGGITFKESDVLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDL 169
HLFD+ IPG + ES+ G + I +GL ICYD+RFPEL+ RK+G L
Sbjct: 120 HLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQL 179
Query: 170 LIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANIL 229
L +P AF + TG HWE L+R+RA +NQ YV A + N ++GHS VVDPW ++
Sbjct: 180 LSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVV 239
Query: 230 ATSQFEETIVYADIDLNTLNKVRDQIP 256
A + +A+IDL+ ++ +R+ P
Sbjct: 240 AQCSERVDMCFAEIDLSYVDTLREMQP 266
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 146 bits (369), Expect = 5e-43
Identities = 57/303 (18%), Positives = 114/303 (37%), Gaps = 43/303 (14%)
Query: 12 KSFKIALVQM---TVGKDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKY----- 63
+ +A+ Q + + + + + + KAA GA+ IV PE + ++
Sbjct: 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61
Query: 64 --FREYSEEIGSGITSKTLSNVAKEKEIFLVGGS---IPELDNDKVYNAATVHLFD---- 114
+ E G + L A E I G + E + +N + +
Sbjct: 62 AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121
Query: 115 -----IAIPGGITFKESD---------VLSPGNSFSMFNNGICNIGLGICYDMRFPELAQ 160
I +PG ++ F +++ +G+ I D R+PE +
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWR 181
Query: 161 VYRKKGCDLLIYPGA---------FNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNS 211
V +G +++ + H L +++ + N + AA A
Sbjct: 182 VMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGM-EE 240
Query: 212 DYIAWGHSTVVDPWANILA-TSQFEETIVYADIDLNTLNKVRDQIPTGKQ-KRYDLYDVT 269
+ + GHS +V P I+A T+ E+ ++ A +DL+ ++R+ I KQ ++ Y +
Sbjct: 241 NCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLI 300
Query: 270 AKL 272
A+L
Sbjct: 301 AEL 303
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 139 bits (349), Expect = 2e-40
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 16/263 (6%)
Query: 15 KIALVQMTVG-KDKNKNLENAVRFIRKAADNGASLIVLPECFNCPYGTKYFREYSEEIGS 73
K+ +QM + +KN A + I++A+ GA L+VLPE F+ Y + E +
Sbjct: 3 KVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQ 62
Query: 74 GITSKTLSNVAKEKEIFLVGGSIPELDNDKVYNAATVHLFDIAIPGGITFK------ESD 127
+T + + + + + Y + + G K E
Sbjct: 63 IPEGETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHLFYREKV 122
Query: 128 VLSPGN-SFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCDLLIYPGAFNMTTGPLHWE 186
PG+ F +F+ G +G+ IC+D FPE A+ KG +++ +P M P
Sbjct: 123 FFEPGDLGFKVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPANLVMPYAPRAM- 181
Query: 187 LLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANILA-TSQFEETIVYADIDL 245
RA +N+VY ++ G S + P A +L+ S+ EE I +IDL
Sbjct: 182 ---PIRALENRVYTITADRVGEER-GLKFIGKSLIASPKAEVLSIASETEEEIGVVEIDL 237
Query: 246 NTLN--KVRDQIPTGKQKRYDLY 266
N ++ D K +R + Y
Sbjct: 238 NLARNKRLNDMNDIFKDRREEYY 260
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 136 bits (341), Expect = 4e-39
Identities = 123/275 (44%), Positives = 160/275 (58%), Gaps = 22/275 (8%)
Query: 11 AKSFKIALVQMT-VGKDKNKNLENAVRFIRKAADN--GASLIVLPECFNCPYGTKYFREY 67
++ K+ALVQ++ DK NL+ A FI +A L+VLPECFN PY T FR+Y
Sbjct: 7 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKY 66
Query: 68 S---EEIGSGITSKTLSNVAKEKEIFLVGGSIPELDNDK----------------VYNAA 108
S + + LSN+A + +I LVGG+IPELD +
Sbjct: 67 SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 126
Query: 109 TVHLFDIAIPGGITFKESDVLSPGNSFSMFNNGICNIGLGICYDMRFPELAQVYRKKGCD 168
VHLFD+ IP GI+F ES+ LSPG + + G+GICYDMRFPELA + +KG
Sbjct: 127 KVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAF 186
Query: 169 LLIYPGAFNMTTGPLHWELLVRSRANDNQVYVAACSPAQDKNSDYIAWGHSTVVDPWANI 228
+IYP AFN TGPLHW LL RSRA DNQVYV CSPA++ S Y A+GHS VVDP I
Sbjct: 187 AMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKI 246
Query: 229 LATSQFEETIVYADIDLNTLNKVRDQIPTGKQKRY 263
+A + E I+YA++D + R +P KQ+R+
Sbjct: 247 VAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRRF 281
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB)
{Helicobacter pylori [TaxId: 210]}
Length = 133
Score = 26.3 bits (56), Expect = 2.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 24 GKDKNKNLENAVRFIRKAADNG 45
GK KN + AV+ KA G
Sbjct: 104 GKGVVKNEKQAVKTFEKACRLG 125
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 26.8 bits (59), Expect = 3.4
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 2 FSQIRKMSTAKSFKIALVQMTVGKDKNKNLENAVRFIRK----AADNGASLIVL 51
I+ ++A V D +LE+A+ + K GA ++VL
Sbjct: 121 LQAIKTGQ----LQVAEVSTLYDLDGVNSLEDALTNLVKTAIATVQAGAEILVL 170
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 25.3 bits (55), Expect = 5.4
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 7 KMSTAKSFKIALVQMTVGKDKNKNLENAVR--FIRKAADNGASLIVLPECFNCPYGTKYF 64
++ A+SF+ A+V + + L F + + + ++ +P + +
Sbjct: 7 YVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQAL 66
Query: 65 REYSEEIG 72
+ +
Sbjct: 67 GKSGKYHA 74
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 26.0 bits (55), Expect = 5.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 24 GKDKNKNLENAVRFIRKAADNG 45
G+ +N + A+ +K G
Sbjct: 227 GEGVTRNEKQAIENFKKGCKLG 248
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 25.0 bits (54), Expect = 7.7
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 51 LPECFNCPYGTKYFREYSEEIGS 73
L N G F+ + + S
Sbjct: 13 LENLINHECGLAAFKAFLKSEYS 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,011,940
Number of extensions: 47267
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 13
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)