BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1782
(90 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE NNGLSV SLLNAE
Sbjct: 116 IVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEENNQNNGLSVGSLLNAE 175
Query: 69 MLSRQVGAVREEV 81
MLSRQVGA E++
Sbjct: 176 MLSRQVGAALEQM 188
>gi|189164166|gb|ACD77184.1| putative hepatocyte nuclear factor 4 nuclear hormone receptor
[Callosobruchus maculatus]
Length = 507
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE+ NNGLSV SLLNAE
Sbjct: 126 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEESNQNNGLSVGSLLNAE 185
Query: 69 MLSRQVGAVREEVS 82
MLSRQVGA E++
Sbjct: 186 MLSRQVGAALEQMG 199
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE NNGLSV SLLNAE
Sbjct: 116 IVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEENNQNNGLSVGSLLNAE 175
Query: 69 MLSRQVGAVREEV 81
MLSRQVGA E++
Sbjct: 176 MLSRQVGAALEQM 188
>gi|242019940|ref|XP_002430416.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515546|gb|EEB17678.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 362
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSY+ET NNGLSV SLLNAE
Sbjct: 76 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYDETNQNNGLSVTSLLNAE 135
Query: 69 MLSRQ 73
MLSRQ
Sbjct: 136 MLSRQ 140
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/72 (86%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN-NGLSVNSLLNA 67
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE T N +GLSV SLL A
Sbjct: 164 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQTNNGSGLSVVSLLQA 223
Query: 68 EMLSRQVGAVRE 79
EMLSRQVGA E
Sbjct: 224 EMLSRQVGAALE 235
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN-NGLSVNSLLNA 67
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE + N +GLSV SLL A
Sbjct: 110 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSNNGSGLSVVSLLQA 169
Query: 68 EMLSRQVGAVRE 79
EMLSRQVGA E
Sbjct: 170 EMLSRQVGAALE 181
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN-NGLSVNSLLNA 67
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE + N +GLSV SLL A
Sbjct: 78 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSNNGSGLSVVSLLQA 137
Query: 68 EMLSRQVGAVRE 79
EMLSRQVGA E
Sbjct: 138 EMLSRQVGAALE 149
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN-NGLSVNSLLNA 67
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPSYEE + N +GLSV SLL A
Sbjct: 69 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSNNGSGLSVVSLLQA 128
Query: 68 EMLSRQVGAVRE 79
EMLSRQVGA E
Sbjct: 129 EMLSRQVGAALE 140
>gi|112984316|ref|NP_001037474.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
Length = 436
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRI+CRRPSYEE T NGLSV SLLNAE
Sbjct: 100 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQANGLSVVSLLNAE 159
Query: 69 MLSRQV 74
+LSR+V
Sbjct: 160 LLSRKV 165
>gi|290555896|ref|NP_001166834.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
gi|2734852|gb|AAB93763.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
Length = 410
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRI+CRRPSYEE T NGLSV SLLNAE
Sbjct: 74 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQANGLSVVSLLNAE 133
Query: 69 MLSRQV 74
+LSR+V
Sbjct: 134 LLSRKV 139
>gi|373943373|gb|AEY80162.1| SXR-like protein, partial [Hyblaea puera]
Length = 209
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRI+CRRPSYEE T NGLSV SLLNAE
Sbjct: 21 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQANGLSVVSLLNAE 80
Query: 69 MLSRQV 74
+LSR+V
Sbjct: 81 LLSRKV 86
>gi|90025357|gb|ABD85142.1| SXR-like nuclear receptor [Lymantria dispar]
Length = 424
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRI+CRRPSYEE T NGLSV SLLNAE
Sbjct: 66 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQANGLSVVSLLNAE 125
Query: 69 MLSRQV 74
+LSR+V
Sbjct: 126 LLSRKV 131
>gi|357631166|gb|EHJ78814.1| SXR-like nuclear receptor [Danaus plexippus]
Length = 497
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 61/66 (92%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRI+CRRPSYEE NGLSV SLLNAE
Sbjct: 124 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPAQANGLSVVSLLNAE 183
Query: 69 MLSRQV 74
+LSR+V
Sbjct: 184 LLSRKV 189
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN-NGLSVNSLLNA 67
++DKDKRNQCRYCRL+KCFKAGMK EAVQNERDRISCRRPSYEE + N +GLSV SLL A
Sbjct: 78 IIDKDKRNQCRYCRLRKCFKAGMKMEAVQNERDRISCRRPSYEEQSNNGSGLSVVSLLQA 137
Query: 68 EMLSRQVGAV 77
EMLSRQV ++
Sbjct: 138 EMLSRQVASL 147
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL KCFKAGMKKEAVQNERDRIS RRPSYEE + NGL+++ L+NAE
Sbjct: 104 VVDKDKRNQCRYCRLGKCFKAGMKKEAVQNERDRISSRRPSYEEPVSANGLTISVLINAE 163
Query: 69 MLSRQVGAVRE 79
+SRQ+ AV +
Sbjct: 164 TMSRQLSAVND 174
>gi|162416915|emb|CAJ53825.2| putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis]
Length = 312
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 68/82 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRIS RR SYE+T+ NN LSV++LLNAE
Sbjct: 42 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISTRRDSYEDTSQNNSLSVSTLLNAE 101
Query: 69 MLSRQVGAVREEVSLFGSLLVT 90
+LSRQ+ + + L ++ T
Sbjct: 102 ILSRQISSPVGQCDLTHKVIAT 123
>gi|328717673|ref|XP_001946928.2| PREDICTED: transcription factor HNF-4 homolog isoform 1
[Acyrthosiphon pisum]
Length = 383
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+V+KDKRNQCRYCRL+KCFKAGM+KEAVQNERDRI+CRRPSYEE +GLSV SLLNAE
Sbjct: 81 IVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCASGLSVTSLLNAE 140
Query: 69 MLSRQVGAVREEVSLFGSLLV 89
+LSR E+ +L L+
Sbjct: 141 ILSRSESDTAEDTNLTNKLVA 161
>gi|328717679|ref|XP_003246275.1| PREDICTED: transcription factor HNF-4 homolog isoform 4
[Acyrthosiphon pisum]
Length = 420
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+V+KDKRNQCRYCRL+KCFKAGM+KEAVQNERDRI+CRRPSYEE +GLSV SLLNAE
Sbjct: 118 IVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCASGLSVTSLLNAE 177
Query: 69 MLSRQVGAVREEVSLFGSLLV 89
+LSR E+ +L L+
Sbjct: 178 ILSRSESDTAEDTNLTNKLVA 198
>gi|328717677|ref|XP_003246274.1| PREDICTED: transcription factor HNF-4 homolog isoform 3
[Acyrthosiphon pisum]
Length = 375
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+V+KDKRNQCRYCRL+KCFKAGM+KEAVQNERDRI+CRRPSYEE +GLSV SLLNAE
Sbjct: 73 IVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCASGLSVTSLLNAE 132
Query: 69 MLSRQVGAVREEVSLFGSLLV 89
+LSR E+ +L L+
Sbjct: 133 ILSRSESDTAEDTNLTNKLVA 153
>gi|328717675|ref|XP_003246273.1| PREDICTED: transcription factor HNF-4 homolog isoform 2
[Acyrthosiphon pisum]
Length = 404
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 65/80 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+V+KDKRNQCRYCRL+KCFKAGM+KEAVQNERDRI+CRRPSYEE +GLSV SLLNAE
Sbjct: 117 IVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCASGLSVTSLLNAE 176
Query: 69 MLSRQVGAVREEVSLFGSLL 88
+LSR E+ +L L+
Sbjct: 177 ILSRSESDTAEDTNLTNKLV 196
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/66 (77%), Positives = 59/66 (89%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RRPSYE++ N G+S+ L+NAE
Sbjct: 95 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRPSYEDSLQNGGVSIPQLVNAE 154
Query: 69 MLSRQV 74
+SRQV
Sbjct: 155 HMSRQV 160
>gi|443685320|gb|ELT88964.1| hypothetical protein CAPTEDRAFT_172322 [Capitella teleta]
Length = 374
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGM+KEAVQNERDRIS RR +YEE N LSV +LLNAE
Sbjct: 84 VVDKDKRNQCRYCRLKKCFRAGMRKEAVQNERDRISVRRTTYEEIGQNGALSVGTLLNAE 143
Query: 69 MLSRQVG 75
+LSRQVG
Sbjct: 144 LLSRQVG 150
>gi|347967270|ref|XP_308036.5| AGAP002155-PA [Anopheles gambiae str. PEST]
gi|347967272|ref|XP_003436042.1| AGAP002155-PB [Anopheles gambiae str. PEST]
gi|333466373|gb|EAA03702.6| AGAP002155-PA [Anopheles gambiae str. PEST]
gi|333466374|gb|EGK96219.1| AGAP002155-PB [Anopheles gambiae str. PEST]
Length = 596
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/74 (71%), Positives = 59/74 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR+PS ++ NGLSV LL AE
Sbjct: 94 VVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRKPSTDDKNTINGLSVKFLLRAE 153
Query: 69 MLSRQVGAVREEVS 82
SR GA +E +
Sbjct: 154 NFSRHFGAALDETN 167
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/66 (78%), Positives = 59/66 (89%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ A LSV++L+NAE
Sbjct: 96 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISSRRTSYEDPGAGGPLSVSALMNAE 155
Query: 69 MLSRQV 74
+LSRQV
Sbjct: 156 ILSRQV 161
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE+ N LSV++LLNAE
Sbjct: 98 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISVRRTSYEDVNQTNSLSVSTLLNAE 157
Query: 69 MLSRQVGAVREEVSLFGSLLVT 90
+LSRQ+ + L L+ T
Sbjct: 158 ILSRQMTSPAVGTDLSHKLVAT 179
>gi|157129052|ref|XP_001655253.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
gi|108872374|gb|EAT36599.1| AAEL011323-PA, partial [Aedes aegypti]
Length = 531
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPS E+ +NGLSV LL AE
Sbjct: 86 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNGLSVKFLLLAE 145
Query: 69 MLSRQVGAVREEV 81
SR GA ++
Sbjct: 146 NRSRHFGAALDDA 158
>gi|3608378|gb|AAC72723.1| nuclear transcription factor 4 homolog isoform a [Aedes aegypti]
Length = 565
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPS E+ +NGLSV LL AE
Sbjct: 119 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNGLSVKFLLLAE 178
Query: 69 MLSRQVGAVREEV 81
SR GA ++
Sbjct: 179 NRSRHFGAALDDA 191
>gi|157129050|ref|XP_001655252.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
Length = 532
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPS E+ +NGLSV LL AE
Sbjct: 86 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNGLSVKFLLLAE 145
Query: 69 MLSRQVGAVREEV 81
SR GA ++
Sbjct: 146 NRSRHFGAALDDA 158
>gi|3608380|gb|AAC72724.1| nuclear transcription factor 4 homolog isoform b [Aedes aegypti]
Length = 538
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRRPS E+ +NGLSV LL AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNGLSVKFLLLAE 151
Query: 69 MLSRQVGAVREEV 81
SR GA ++
Sbjct: 152 NRSRHFGAALDDA 164
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ + +SVN LLNAE
Sbjct: 53 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRTSYEDNLTSGSMSVNMLLNAE 112
Query: 69 MLSRQVGAVREE 80
+LSRQ+ E
Sbjct: 113 VLSRQMAPPLSE 124
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 57/67 (85%), Gaps = 2/67 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLN 66
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRIS RRPSYEE A+ NGLS LL+
Sbjct: 99 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISSRRPSYEEQLASNVNGLSAVHLLH 158
Query: 67 AEMLSRQ 73
EM +RQ
Sbjct: 159 VEMFNRQ 165
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 51/72 (70%), Positives = 59/72 (81%), Gaps = 6/72 (8%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKE------AVQNERDRISCRRPSYEETTANNGLSVN 62
+VDKDKRNQCRYCRLKKCF+AGMKKE AVQNERDRIS RRPSYE++ N G+S+
Sbjct: 64 VVDKDKRNQCRYCRLKKCFRAGMKKEACSSTPAVQNERDRISTRRPSYEDSLQNGGVSIP 123
Query: 63 SLLNAEMLSRQV 74
L+NAE +SRQV
Sbjct: 124 QLVNAEHMSRQV 135
>gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 516
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 135 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 192
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 193 -SINALLQAEVLSRQI 207
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 136 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 193
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 194 -SINALLQAEVLSRQI 208
>gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 alpha (HNF4alpha4) [Homo sapiens]
gi|1588510|prf||2208436A hepatocyte nuclear factor 4:ISOTYPE=alpha
Length = 504
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 123 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 180
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 181 -SINALLQAEVLSRQI 195
>gi|297259762|ref|XP_001110097.2| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Macaca
mulatta]
Length = 462
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 81 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 138
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 139 -SINALLQAEVLSRQI 153
>gi|385298694|ref|NP_001245284.1| hepatocyte nuclear factor 4-alpha isoform g [Homo sapiens]
gi|119596329|gb|EAW75923.1| hepatocyte nuclear factor 4, alpha, isoform CRA_c [Homo sapiens]
Length = 467
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 86 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 143
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 144 -SINALLQAEVLSRQI 158
>gi|198472026|ref|XP_001355813.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
gi|198139573|gb|EAL32872.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
Length = 686
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 56/68 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 187 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 246
Query: 69 MLSRQVGA 76
SRQ A
Sbjct: 247 NESRQSKA 254
>gi|195473133|ref|XP_002088850.1| GE10817 [Drosophila yakuba]
gi|194174951|gb|EDW88562.1| GE10817 [Drosophila yakuba]
Length = 703
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 184 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 243
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 244 NESRQSKAGAAME 256
>gi|194760751|ref|XP_001962596.1| GF14359 [Drosophila ananassae]
gi|190616293|gb|EDV31817.1| GF14359 [Drosophila ananassae]
Length = 735
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 215 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 274
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 275 NESRQSKAGAAME 287
>gi|397511217|ref|XP_003825975.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 3 [Pan
paniscus]
Length = 467
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 86 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 143
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 144 -SINALLQAEVLSRQI 158
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 282 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVVSLVKAE 341
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 342 NESRQSKAGAAME 354
>gi|195577679|ref|XP_002078696.1| GD22387 [Drosophila simulans]
gi|194190705|gb|EDX04281.1| GD22387 [Drosophila simulans]
Length = 703
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 184 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 243
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 244 NESRQSKAGAAME 256
>gi|195339307|ref|XP_002036261.1| GM12759 [Drosophila sechellia]
gi|194130141|gb|EDW52184.1| GM12759 [Drosophila sechellia]
Length = 703
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 184 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 243
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 244 NESRQSKAGAAME 256
>gi|24582907|ref|NP_476887.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|442626918|ref|NP_723414.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
gi|22945982|gb|AAF52702.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|28317035|gb|AAO39537.1| RE09535p [Drosophila melanogaster]
gi|220942524|gb|ACL83805.1| Hnf4-PA [synthetic construct]
gi|220952740|gb|ACL88913.1| Hnf4-PA [synthetic construct]
gi|440213579|gb|AAF52703.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
Length = 704
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 185 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 244
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 245 NESRQSKAGAAME 257
>gi|195398447|ref|XP_002057833.1| GJ17882 [Drosophila virilis]
gi|194141487|gb|EDW57906.1| GJ17882 [Drosophila virilis]
Length = 679
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 185 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVVSLVKAE 244
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 245 NESRQSKAGAAME 257
>gi|195115900|ref|XP_002002494.1| GI12430 [Drosophila mojavensis]
gi|193913069|gb|EDW11936.1| GI12430 [Drosophila mojavensis]
Length = 715
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 217 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVVSLVKAE 276
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 277 NESRQSKAGAAMEP 290
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 56/68 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 172 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 231
Query: 69 MLSRQVGA 76
SRQ A
Sbjct: 232 NESRQSKA 239
>gi|194858671|ref|XP_001969229.1| GG24056 [Drosophila erecta]
gi|190661096|gb|EDV58288.1| GG24056 [Drosophila erecta]
Length = 704
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 185 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 244
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 245 NESRQSKAGAAME 257
>gi|24582909|ref|NP_723413.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
gi|22945983|gb|AAN10680.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
Length = 732
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 213 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 272
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 273 NESRQSKAGAAMEP 286
>gi|25012937|gb|AAN71555.1| RH29074p, partial [Drosophila melanogaster]
Length = 738
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 219 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 278
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 279 NESRQSKAGAAMEP 292
>gi|161076819|ref|NP_001097126.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
gi|157400121|gb|ABV53653.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
Length = 708
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 189 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 248
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 249 NESRQSKAGAAME 261
>gi|241669014|gb|ACS68165.1| FI04795p [Drosophila melanogaster]
Length = 738
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 219 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 278
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 279 NESRQSKAGAAMEP 292
>gi|1575768|gb|AAB09592.1| hepatocyte nuclear factor 4 homolog [Drosophila melanogaster]
Length = 666
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 147 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 206
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 207 NESRQSKAGAAMEP 220
>gi|12644293|sp|P49866.2|HNF4_DROME RecName: Full=Transcription factor HNF-4 homolog; Short=dHNF4;
AltName: Full=Nuclear receptor subfamily 2 group A
member 4
Length = 666
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 147 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 206
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 207 NESRQSKAGAAMEP 220
>gi|195156579|ref|XP_002019177.1| GL26219 [Drosophila persimilis]
gi|194115330|gb|EDW37373.1| GL26219 [Drosophila persimilis]
Length = 518
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 56/68 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 187 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 246
Query: 69 MLSRQVGA 76
SRQ A
Sbjct: 247 NESRQSKA 254
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 85 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 142
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 143 -SINALIQADVLSRQI 157
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 142 -SINALIQADVLSRQI 156
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 156 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 213
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 214 -SINALLQAEVLSRQI 228
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 142 -SINALIQADVLSRQI 156
>gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4-alpha isoform a [Homo sapiens]
gi|325495531|gb|ADZ17371.1| hepatocyte nuclear factor 4 4 alpha variant 1 [Homo sapiens]
Length = 464
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 156 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 213
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 214 -SINALLQAEVLSRQI 228
>gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sapiens]
Length = 455
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 142 -SINALLQAEVLSRQI 156
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 142 -SINALIQADVLSRQI 156
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|71725341|ref|NP_001025174.1| hepatocyte nuclear factor 4-alpha isoform e [Homo sapiens]
gi|50980769|gb|AAT91237.1| hepatocyte nuclear factor 4 alpha, transcript variant 7 [Homo
sapiens]
Length = 442
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 129 -SINALLQAEVLSRQI 143
>gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [Homo sapiens]
Length = 465
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 142 -SINALLQAEVLSRQI 156
>gi|71725339|ref|NP_787110.2| hepatocyte nuclear factor 4-alpha isoform d [Homo sapiens]
gi|50980771|gb|AAT91238.1| hepatocyte nuclear factor 4 alpha, transcript variant 8 [Homo
sapiens]
gi|119596327|gb|EAW75921.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Homo sapiens]
gi|325495547|gb|ADZ17379.1| hepatocyte nuclear factor 4 4 alpha variant 4 [Homo sapiens]
Length = 452
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 129 -SINALLQAEVLSRQI 143
>gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapiens]
Length = 465
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 142 -SINALLQAEVLSRQI 156
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|119508140|gb|ABL75645.1| IP16932p [Drosophila melanogaster]
Length = 415
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 189 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 248
Query: 69 MLSRQ--VGAVRE 79
SRQ GA E
Sbjct: 249 NESRQSKAGAAME 261
>gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4-alpha isoform b [Homo sapiens]
gi|148886624|sp|P41235.3|HNF4A_HUMAN RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|119596331|gb|EAW75925.1| hepatocyte nuclear factor 4, alpha, isoform CRA_e [Homo sapiens]
gi|147883854|gb|ABQ52204.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|208966450|dbj|BAG73239.1| hepatocyte nuclear factor 4, alpha [synthetic construct]
gi|325495549|gb|ADZ17380.1| hepatocyte nuclear factor 4 4 alpha variant 2 [Homo sapiens]
Length = 474
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha,
partial [Papio anubis]
Length = 425
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 54 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 111
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 112 -SINALLQAEVLSRQI 126
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 129 -SINALIQADVLSRQI 143
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 108 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 165
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 166 -SINALLQAEVLSQQI 180
>gi|332209102|ref|XP_003253649.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Nomascus
leucogenys]
Length = 418
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|332209104|ref|XP_003253650.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Nomascus
leucogenys]
Length = 396
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 129 -SINALLQAEVLSRQI 143
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+L+ A++LSRQ+ +
Sbjct: 142 -SINALIQADVLSRQISS 158
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+L+ A++LSRQ+ +
Sbjct: 151 -SINALIQADVLSRQISS 167
>gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4-alpha isoform c [Homo sapiens]
gi|119596330|gb|EAW75924.1| hepatocyte nuclear factor 4, alpha, isoform CRA_d [Homo sapiens]
gi|187952661|gb|AAI37541.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|187953631|gb|AAI37540.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 417
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|71725336|ref|NP_001025175.1| hepatocyte nuclear factor 4-alpha isoform f [Homo sapiens]
gi|50980773|gb|AAT91239.1| hepatocyte nuclear factor 4 alpha, transcript variant 9 [Homo
sapiens]
Length = 395
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 129 -SINALLQAEVLSRQI 143
>gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [Homo sapiens]
gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 408
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 142 -SINALLQAEVLSRQI 156
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 57 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 114
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+L+ A++LSRQ+ +
Sbjct: 115 -SINALIQADVLSRQISS 131
>gi|426391780|ref|XP_004062244.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Gorilla gorilla
gorilla]
Length = 303
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQN RDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNGRDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 142 -SINALLQAEVLSRQI 156
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAELLSQQI 165
>gi|391333983|ref|XP_003741389.1| PREDICTED: transcription factor HNF-4 homolog [Metaseiulus
occidentalis]
Length = 648
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 3/80 (3%)
Query: 4 KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLS 60
+ H+ ++DKDKRNQCRYCRL+KCF+AGM+KEAVQNERDRISCRRPSYE+T A GLS
Sbjct: 292 RFHRNCVIDKDKRNQCRYCRLRKCFRAGMRKEAVQNERDRISCRRPSYEDTGALAAQGLS 351
Query: 61 VNSLLNAEMLSRQVGAVREE 80
+ L+ A++ SR A E
Sbjct: 352 LQCLVTADIHSRNNSAGYEH 371
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|354493673|ref|XP_003508964.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 4
[Cricetulus griseus]
Length = 449
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|432867223|ref|XP_004071086.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 431
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/66 (68%), Positives = 58/66 (87%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++ S+N+L+ A+
Sbjct: 72 IVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP---SINALIQAD 128
Query: 69 MLSRQV 74
+++RQ+
Sbjct: 129 VMTRQI 134
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|354493671|ref|XP_003508963.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 3
[Cricetulus griseus]
Length = 439
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSFP-- 141
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+L+ A++LSRQ+ +
Sbjct: 142 -SINALIQADVLSRQISS 158
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 129 -SINALLQAEVLSQQI 143
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 129 -SINALLQAEVLSQQI 143
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 65/78 (83%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N LL AE+LS+Q+ +
Sbjct: 151 -SINVLLQAEVLSQQISS 167
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+LL AE+L++Q+ +
Sbjct: 142 -SINALLQAEVLAQQISS 158
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 142 -SINALLQAEVLSQQI 156
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 65/78 (83%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N LL AE+LS+Q+ +
Sbjct: 151 -SINVLLQAEVLSQQISS 167
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|94481791|gb|ABF21496.1| hepatocyte nuclear factor-4 alpha [Oreochromis mossambicus]
Length = 340
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+L+ A++LSRQ+
Sbjct: 142 -SINALIQADVLSRQI 156
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|122938528|gb|ABM69088.1| hepatocyte nuclear factor 4 alpha 9 [Rattus norvegicus]
Length = 356
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 71 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 128
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 129 -SINALLQAEVLSQQI 143
>gi|395506966|ref|XP_003757799.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Sarcophilus harrisii]
Length = 358
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 60 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 117
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N+LL+AE L++Q+ +
Sbjct: 118 -SINALLHAEALAQQISS 134
>gi|222431989|gb|ACM50921.1| HNF4alpha12 [Mus musculus]
Length = 353
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|222431983|gb|ACM50918.1| HNF4alpha12 [Rattus norvegicus]
Length = 353
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 125
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 126 -SINALLQAEVLSQQI 140
>gi|122938532|gb|ABM69090.1| hepatocyte nuclear factor 4 alpha 3 [Rattus norvegicus]
gi|122938534|gb|ABM69091.1| hepatocyte nuclear factor 4 alpha 3 [Mus musculus]
Length = 358
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 73 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 130
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 131 -SINALLQAEVLSQQI 145
>gi|122938530|gb|ABM69089.1| hepatocyte nuclear factor 4 alpha 9 [Mus musculus]
Length = 350
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 65 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 122
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 123 -SINALLQAEVLSQQI 137
>gi|224172708|ref|XP_002189627.1| PREDICTED: hepatocyte nuclear factor 4-beta-like, partial
[Taeniopygia guttata]
Length = 267
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 57/69 (82%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 74 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSINILTQAE 130
Query: 69 MLSRQVGAV 77
+++QVG V
Sbjct: 131 AMAQQVGHV 139
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 65/78 (83%), Gaps = 5/78 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQVGA 76
S+N LL AE+L++Q+ +
Sbjct: 142 -SINVLLQAEVLAQQISS 158
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N L+ AE+LS+Q+
Sbjct: 151 -SINVLIQAEVLSQQI 165
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+ +LL AE+LS+Q+
Sbjct: 151 -SITALLQAEVLSQQI 165
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+ +LL AE+LS+Q+
Sbjct: 151 -SITALLQAEVLSQQI 165
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N L+ AE+LS+Q+
Sbjct: 151 -SINVLIQAEVLSQQI 165
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 84 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 141
Query: 59 LSVNSLLNAEMLSRQV 74
S+N L+ AE+LS+Q+
Sbjct: 142 -SINVLIQAEVLSQQI 156
>gi|301607256|ref|XP_002933229.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 420
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/66 (71%), Positives = 57/66 (86%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++ S+N L+ AE
Sbjct: 59 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP---SINVLIQAE 115
Query: 69 MLSRQV 74
+LS+Q+
Sbjct: 116 VLSQQI 121
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 3/65 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 104 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSINVLTQAE 160
Query: 69 MLSRQ 73
+++Q
Sbjct: 161 AMAQQ 165
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 3/70 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS+ L AE
Sbjct: 102 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGALSITILTQAE 158
Query: 69 MLSRQVGAVR 78
+++Q A+R
Sbjct: 159 AMAQQYSALR 168
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + ++Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+ +LL AE LS+Q+
Sbjct: 151 -SITALLQAEALSQQI 165
>gi|322795773|gb|EFZ18452.1| hypothetical protein SINV_10428 [Solenopsis invicta]
Length = 441
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 5/73 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT-ANNGLS----VNSL 64
+D+DKRNQCRYCRL+KCF+AGMKKEAVQNERDRISCRRPS E+ N G S V +
Sbjct: 72 IDRDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISCRRPSNEDPPDKNKGPSKEDVVKAD 131
Query: 65 LNAEMLSRQVGAV 77
AEMLS+QVG +
Sbjct: 132 ARAEMLSKQVGGL 144
>gi|345320280|ref|XP_001520082.2| PREDICTED: hepatocyte nuclear factor 4-gamma-like, partial
[Ornithorhynchus anatinus]
Length = 308
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 3/70 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCR+CRLKKCF+AGMKKEAVQNERDRIS RR + + +N S+N+L AE
Sbjct: 6 VVDKDKRNQCRFCRLKKCFRAGMKKEAVQNERDRISTRRTA---SDGSNIPSINTLAQAE 62
Query: 69 MLSRQVGAVR 78
LSRQV +R
Sbjct: 63 TLSRQVALLR 72
>gi|410055259|ref|XP_514664.4| PREDICTED: hepatocyte nuclear factor 4-alpha [Pan troglodytes]
Length = 482
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/60 (76%), Positives = 52/60 (86%), Gaps = 3/60 (5%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE++ N S+N+LL AE
Sbjct: 99 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDS---NLPSINALLQAE 155
>gi|6016234|sp|P79926.1|HNF4B_XENLA RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta;
AltName: Full=Nuclear receptor subfamily 2 group A
member 3
gi|1771970|emb|CAA89991.1| hepatocyte nuclear factor 4 beta (HNF4 beta) [Xenopus laevis]
Length = 446
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 93 IVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISMRRSSYED---NGSLSINVLTQAE 149
Query: 69 MLSRQVGAV 77
+ Q V
Sbjct: 150 AMVHQYSPV 158
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 3/65 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 113 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSINILTQAE 169
Query: 69 MLSRQ 73
+++Q
Sbjct: 170 AMAQQ 174
>gi|148228957|ref|NP_001081539.1| hepatocyte nuclear factor 4-beta [Xenopus laevis]
gi|125859019|gb|AAI29598.1| LOC397902 protein [Xenopus laevis]
Length = 455
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 102 IVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISMRRSSYED---NGSLSINVLTQAE 158
Query: 69 MLSRQVGAV 77
+ Q V
Sbjct: 159 AMVHQYSPV 167
>gi|395510982|ref|XP_003759744.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Sarcophilus harrisii]
Length = 455
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR ++E +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNNFE---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 159 ALSRQI 164
>gi|301620547|ref|XP_002939634.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Xenopus
(Silurana) tropicalis]
Length = 453
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 3/68 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS R+ ++E + S+N+L AE
Sbjct: 102 IVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRKSAFEGSIIP---SINTLSQAE 158
Query: 69 MLSRQVGA 76
+LSRQ+ A
Sbjct: 159 VLSRQITA 166
>gi|332020205|gb|EGI60649.1| Transcription factor HNF-4-like protein [Acromyrmex echinatior]
Length = 440
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 5/73 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE-TTANNGLS----VNSL 64
+D+DKRNQCRYCRL+KCF+AGMKKEAVQNERDRISCRRPS E+ N G S V +
Sbjct: 70 IDRDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISCRRPSNEDPPDKNKGPSKEDVVKAD 129
Query: 65 LNAEMLSRQVGAV 77
AEMLS+ VG +
Sbjct: 130 TRAEMLSKHVGGL 142
>gi|344273185|ref|XP_003408404.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Loxodonta
africana]
Length = 455
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 3/68 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRNTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQVGA 76
+LSRQ+
Sbjct: 159 VLSRQISG 166
>gi|126321023|ref|XP_001367478.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Monodelphis
domestica]
Length = 455
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMK+EAVQNERDRIS RR ++E +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLKKCFRAGMKREAVQNERDRISTRRNNFE---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 159 ALSRQI 164
>gi|57116108|gb|AAW33563.1| hepatic nuclear factor 4beta [Gallus gallus]
Length = 459
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 3/65 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS++ L AE
Sbjct: 104 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSISVLTQAE 160
Query: 69 MLSRQ 73
+++Q
Sbjct: 161 AMAQQ 165
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 56/67 (83%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
VDKDKRNQCRYCRL+KCF+AGMK+EAVQNERDRIS ++ + +++ + LSV +LLNA+
Sbjct: 152 VDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKSTIDDSAS---LSVTTLLNADT 208
Query: 70 LSRQVGA 76
+S+Q A
Sbjct: 209 MSKQPSA 215
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 3/65 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS++ L AE
Sbjct: 113 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSISVLTQAE 169
Query: 69 MLSRQ 73
+++Q
Sbjct: 170 AMAQQ 174
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 3/65 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+ N LS++ L AE
Sbjct: 113 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYED---NGSLSISVLTQAE 169
Query: 69 MLSRQ 73
+++Q
Sbjct: 170 AMAQQ 174
>gi|338728283|ref|XP_001490847.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Equus
caballus]
Length = 446
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 57/74 (77%), Gaps = 3/74 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +Y+ ++ S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYDGSSIP---SINTLAQAE 149
Query: 69 MLSRQVGAVREEVS 82
+ SRQ+ VS
Sbjct: 150 VRSRQISISSPGVS 163
>gi|1588511|prf||2208436B hepatocyte nuclear factor 4
Length = 774
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 421 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 477
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 478 VRSRQI 483
>gi|345793141|ref|XP_544134.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Canis lupus
familiaris]
Length = 446
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 149
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 150 IRSRQI 155
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 56/67 (83%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
VDKDKRNQCRYCRL+KCF+AGMK+EAVQNERDRIS ++ + +++ + LSV +LLNA+
Sbjct: 104 VDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKSTIDDSAS---LSVTTLLNADT 160
Query: 70 LSRQVGA 76
+S+Q A
Sbjct: 161 MSKQPSA 167
>gi|410987323|ref|XP_003999954.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Felis
catus]
Length = 446
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 149
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 150 IRSRQI 155
>gi|345793143|ref|XP_003433716.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Canis lupus
familiaris]
Length = 408
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 IRSRQI 117
>gi|281348540|gb|EFB24124.1| hypothetical protein PANDA_019943 [Ailuropoda melanoleuca]
Length = 446
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 149
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 150 VRSRQI 155
>gi|348588691|ref|XP_003480098.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cavia porcellus]
Length = 455
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 159 IRSRQI 164
>gi|301788566|ref|XP_002929700.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Ailuropoda
melanoleuca]
Length = 455
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 159 VRSRQI 164
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR +++ N S+++L AE
Sbjct: 102 IVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNTFD---GCNSPSISTLSQAE 158
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 159 TLSRQI 164
>gi|444705874|gb|ELW47258.1| Hepatocyte nuclear factor 4-gamma [Tupaia chinensis]
Length = 497
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 103 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 159
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 160 VRSRQI 165
>gi|410987325|ref|XP_003999955.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Felis
catus]
Length = 408
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 IRSRQI 117
>gi|395855283|ref|XP_003800096.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Otolemur garnettii]
Length = 446
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 149
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 150 VRSRQI 155
>gi|426235662|ref|XP_004011799.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Ovis aries]
Length = 446
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 149
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 150 VRSRQI 155
>gi|354471113|ref|XP_003497788.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cricetulus
griseus]
Length = 455
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 159 VRSRQI 164
>gi|126304932|ref|XP_001375141.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Monodelphis
domestica]
Length = 459
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE++ LS++ L AE
Sbjct: 103 VIDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISIRRNSYEDS---GSLSISILTQAE 159
Query: 69 MLSRQVGAV 77
+++ Q ++
Sbjct: 160 VMATQYSSI 168
>gi|115583654|ref|NP_004124.4| hepatocyte nuclear factor 4-gamma [Homo sapiens]
gi|190691697|gb|ACE87623.1| hepatocyte nuclear factor 4, gamma protein [synthetic construct]
gi|325495495|gb|ADZ17353.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|332240662|ref|XP_003269505.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Nomascus leucogenys]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|291388149|ref|XP_002710691.1| PREDICTED: hepatocyte nuclear factor 4, gamma [Oryctolagus
cuniculus]
Length = 455
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 159 VRSRQI 164
>gi|332827154|ref|XP_528171.3| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
troglodytes]
gi|397522594|ref|XP_003831346.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
paniscus]
gi|426359948|ref|XP_004047216.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Gorilla
gorilla gorilla]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|390475727|ref|XP_002759056.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Callithrix
jacchus]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|395739787|ref|XP_002819236.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Pongo abelii]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|119607446|gb|EAW87040.1| hepatocyte nuclear factor 4, gamma, isoform CRA_a [Homo sapiens]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|157822005|ref|NP_001102409.1| hepatocyte nuclear factor 4-gamma [Rattus norvegicus]
gi|149048503|gb|EDM01044.1| hepatocyte nuclear factor 4, gamma (predicted) [Rattus norvegicus]
Length = 418
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +YE T N S+N+L AE
Sbjct: 65 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYEGT---NIPSINTLAQAE 121
Query: 69 MLSRQVGAVREEVS 82
+ S Q+ S
Sbjct: 122 VRSCQISVPNPSAS 135
>gi|403299977|ref|XP_003940746.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Saimiri boliviensis
boliviensis]
Length = 445
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|297299621|ref|XP_001087848.2| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 2 [Macaca
mulatta]
Length = 455
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 158
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 159 VRSRQI 164
>gi|402878525|ref|XP_003902931.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Papio
anubis]
Length = 445
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|355698038|gb|EHH28586.1| Hepatocyte nuclear factor 4-gamma [Macaca mulatta]
gi|355779768|gb|EHH64244.1| Hepatocyte nuclear factor 4-gamma [Macaca fascicularis]
Length = 445
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 148
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 149 VRSRQI 154
>gi|296480539|tpg|DAA22654.1| TPA: hepatocyte nuclear factor 4, gamma [Bos taurus]
Length = 425
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 72 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 128
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 129 VRSRQI 134
>gi|45430043|ref|NP_991380.1| hepatocyte nuclear factor 4-gamma [Bos taurus]
gi|32454393|gb|AAP82998.1| hepatocyte nuclear factor 4gamma [Bos taurus]
Length = 425
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 72 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 128
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 129 VRSRQI 134
>gi|154757671|gb|AAI51654.1| HNF4G protein [Bos taurus]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|296226749|ref|XP_002759057.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Callithrix
jacchus]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|5834598|emb|CAA89990.2| hepatocyte nuclear factor 4 gamma (HNF4gamma) [Homo sapiens]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|6002728|gb|AAF00110.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|332827156|ref|XP_003339197.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827190|ref|XP_003339198.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827194|ref|XP_003311815.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
troglodytes]
gi|397522596|ref|XP_003831347.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Pan
paniscus]
gi|397522598|ref|XP_003831348.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 3 [Pan
paniscus]
gi|397522600|ref|XP_003831349.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
paniscus]
gi|402878527|ref|XP_003902932.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Papio
anubis]
gi|426359950|ref|XP_004047217.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Gorilla
gorilla gorilla]
gi|160110004|sp|Q14541.3|HNF4G_HUMAN RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
gi|33096752|emb|CAE11875.1| hypothetical protein [Homo sapiens]
gi|85397490|gb|AAI05012.1| HNF4G protein [Homo sapiens]
gi|85398004|gb|AAI05010.1| HNF4G protein [Homo sapiens]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|119607447|gb|EAW87041.1| hepatocyte nuclear factor 4, gamma, isoform CRA_b [Homo sapiens]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|307191079|gb|EFN74819.1| Transcription factor HNF-4-like protein [Camponotus floridanus]
Length = 426
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/71 (63%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
Query: 5 LHKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
+ K +DKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRI+ R PS E T N+G S+ L
Sbjct: 62 MRKCQIDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRINNRPPSNENQTENSGPSMEDL 121
Query: 65 LNAEMLSRQVG 75
L M +R +G
Sbjct: 122 L---MAARHIG 129
>gi|109086735|ref|XP_001087731.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 1 [Macaca
mulatta]
Length = 408
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE+ N LS++ L AE
Sbjct: 102 IVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISMRRSSYED---NGSLSISVLTQAE 158
Query: 69 MLSRQVGAV 77
+ Q +
Sbjct: 159 AMVLQYSPL 167
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE++ + LS+ L AE
Sbjct: 113 VIDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISIRRNSYEDSGS---LSIAILTQAE 169
Query: 69 MLSRQVGAV 77
+++ Q ++
Sbjct: 170 VMATQHSSI 178
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR +++ N S+++L AE
Sbjct: 160 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNTFD---GCNIPSISTLSQAE 216
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 217 ALSRQI 222
>gi|7305147|ref|NP_038948.1| hepatocyte nuclear factor 4-gamma [Mus musculus]
gi|4914655|emb|CAB43724.1| hepatocyte nuclear factor 4 gamma [Mus musculus]
gi|116138605|gb|AAI25520.1| Hepatocyte nuclear factor 4, gamma [Mus musculus]
gi|148673275|gb|EDL05222.1| hepatocyte nuclear factor 4, gamma [Mus musculus]
Length = 418
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +YE +N S+N+L AE
Sbjct: 65 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYE---GSNIPSINTLAQAE 121
Query: 69 MLSRQV 74
+ S Q+
Sbjct: 122 VRSCQI 127
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR +++ N S+++L AE
Sbjct: 101 VVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNTFD---GCNIPSISTLSQAE 157
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 158 TLSRQI 163
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE++ LS++ L AE
Sbjct: 102 VIDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISIRRSSYEDS---GSLSISVLTQAE 158
Query: 69 MLSRQVGAV 77
++ Q ++
Sbjct: 159 AMATQYSSL 167
>gi|10720045|sp|Q9WUU6.2|HNF4G_MOUSE RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
Length = 408
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +YE +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYE---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ S Q+
Sbjct: 112 VRSCQI 117
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/66 (69%), Positives = 56/66 (84%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR + E +++ S+N+L AE
Sbjct: 104 IVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSTSEGSSSP---SINTLAQAE 160
Query: 69 MLSRQV 74
+LSRQ+
Sbjct: 161 VLSRQI 166
>gi|196011894|ref|XP_002115810.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
gi|190581586|gb|EDV21662.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
Length = 327
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DKDKRNQCRYCRLKKCF+AGMKKEAVQ+ERDRIS RRPS E+ + + L+ ++LL AE
Sbjct: 48 VIDKDKRNQCRYCRLKKCFRAGMKKEAVQSERDRIS-RRPS-EDQSGGSELTCSTLLAAE 105
Query: 69 MLSRQVGAVREEVSL 83
+LS+ + E SL
Sbjct: 106 LLSQPQSSPPRECSL 120
>gi|49457135|emb|CAG46888.1| HNF4G [Homo sapiens]
Length = 408
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKK+AVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKKAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|216409716|dbj|BAH02295.1| hepatocyte nuclear factor 4, gamma [Homo sapiens]
Length = 408
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS R +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRSSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>gi|76178768|gb|ABA40996.1| hepatocyte nuclear factor 4 alpha [Bos taurus]
Length = 212
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 51/59 (86%), Gaps = 3/59 (5%)
Query: 16 NQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQV 74
NQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++ S+N+LL AE+LS+Q+
Sbjct: 1 NQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP---SINALLQAEVLSQQI 56
>gi|74180629|dbj|BAE25549.1| unnamed protein product [Mus musculus]
Length = 418
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNER RIS RR +YE +N S+N+L AE
Sbjct: 65 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERGRISTRRSTYE---GSNIPSINTLAQAE 121
Query: 69 MLSRQV 74
+ S Q+
Sbjct: 122 VRSCQI 127
>gi|45387535|ref|NP_991109.1| hepatic nuclear factor 4, beta [Danio rerio]
gi|41351199|gb|AAH65657.1| Hepatic nuclear factor 4, beta [Danio rerio]
Length = 465
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGM+KEAVQNERDRISCRR E L+++ L+ AE
Sbjct: 106 VVDKDKRNQCRYCRLRKCFRAGMRKEAVQNERDRISCRR----ENQGVGTLTIDVLMQAE 161
Query: 69 MLSRQ 73
+ Q
Sbjct: 162 AYTHQ 166
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/68 (61%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR--PSYEETTANNGLSVNSLLN 66
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR P +E + L
Sbjct: 103 IVDKDKRNQCRFCRLNKCFRAGMKKEAVQNERDRISSRRSIPDSQELP-----PITILAQ 157
Query: 67 AEMLSRQV 74
AE LS+Q+
Sbjct: 158 AETLSKQI 165
>gi|115430095|ref|NP_001068579.1| hepatocyte nuclear factor 4-gamma [Danio rerio]
gi|115313265|gb|AAI24294.1| Hepatocyte nuclear factor 4, gamma [Danio rerio]
gi|182891948|gb|AAI65580.1| Hnf4g protein [Danio rerio]
Length = 444
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR + +++ + +L +AE
Sbjct: 91 VVDKDKRNQCRFCRLHKCFRAGMKKEAVQNERDRISSRRNIQD---SHDLPPITALAHAE 147
Query: 69 MLSRQVGA 76
LS+Q+ A
Sbjct: 148 ALSQQITA 155
>gi|68132010|gb|AAY85271.1| HNF4gamma, partial [Danio rerio]
Length = 413
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR + +++ + +L +AE
Sbjct: 72 VVDKDKRNQCRFCRLHKCFRAGMKKEAVQNERDRISSRRNIQD---SHDLPPITALAHAE 128
Query: 69 MLSRQVGA 76
LS+Q+ A
Sbjct: 129 ALSQQITA 136
>gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon nigroviridis]
Length = 431
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR--PSYEETTANNGLSVNSLLN 66
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR P +E + L
Sbjct: 103 IVDKDKRNQCRFCRLNKCFRAGMKKEAVQNERDRISSRRSIPDSQELPP-----ITILAQ 157
Query: 67 AEMLSRQV 74
AE LS+Q+
Sbjct: 158 AETLSKQI 165
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR--PSYEETTANNGLSVNSLLN 66
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR P ++ + L
Sbjct: 105 IVDKDKRNQCRFCRLNKCFRAGMKKEAVQNERDRISSRRNIPDSQDLP-----PITILAQ 159
Query: 67 AEMLSRQV 74
AE LS+Q+
Sbjct: 160 AESLSQQI 167
>gi|156399521|ref|XP_001638550.1| predicted protein [Nematostella vectensis]
gi|156225671|gb|EDO46487.1| predicted protein [Nematostella vectensis]
Length = 323
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 4/79 (5%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+++KDKRNQCR+CRL+KCF+AGMKKEAVQNERD IS ++P E+ GL+ SLL+AE
Sbjct: 44 VINKDKRNQCRFCRLRKCFRAGMKKEAVQNERDSIS-KKPKEEK---KYGLTTQSLLSAE 99
Query: 69 MLSRQVGAVREEVSLFGSL 87
+LSR + +L S+
Sbjct: 100 ILSRPASSPPGTKTLLKSI 118
>gi|380861647|gb|AFF18489.1| HNF4 [Schmidtea mediterranea]
Length = 655
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+DKDKRNQCRYCRLKKC GMK+ AVQNERDRIS RR S+++ N LS++ L+ AE
Sbjct: 110 MDKDKRNQCRYCRLKKCILVGMKRAAVQNERDRISTRRSSFDDIPPNVILSISQLMQAE 168
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR--PSYEETTANNGLSVNSLLN 66
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNERDRIS RR P ++ + L
Sbjct: 104 IVDKDKRNQCRFCRLNKCFRAGMKKEAVQNERDRISSRRSIPDSQDLP-----PITILAQ 158
Query: 67 AEMLSRQV 74
AE LS+Q+
Sbjct: 159 AESLSQQI 166
>gi|348509753|ref|XP_003442411.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Oreochromis
niloticus]
Length = 409
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGM+KEAVQNERD I+ +R + E+T LS++ LL AE
Sbjct: 99 IVDKDKRNQCRYCRLRKCFKAGMRKEAVQNERDCINSQR-AKEQTVGT--LSISVLLQAE 155
Query: 69 MLSRQVGAV 77
+Q A+
Sbjct: 156 TTVQQFPAL 164
>gi|449669174|ref|XP_004206958.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Hydra
magnipapillata]
Length = 473
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
+ +D RNQCRYCRLKKCF GMKKEAVQNERD+IS +P E L+ +L+NAEM
Sbjct: 46 IVRDNRNQCRYCRLKKCFFVGMKKEAVQNERDKISRSKPPEEHDLT---LNPQTLVNAEM 102
Query: 70 LSR 72
LSR
Sbjct: 103 LSR 105
>gi|358339638|dbj|GAA47660.1| hepatocyte nuclear factor 4 [Clonorchis sinensis]
Length = 533
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 2 YSKLHKQ--LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSY--EETTANN 57
Y+ HK+ ++ KDKRNQCR+CRL+KCF+ GMKK AVQNERD+IS RP + T+ ++
Sbjct: 64 YTCRHKRACVITKDKRNQCRFCRLRKCFRVGMKKAAVQNERDKIS-NRPMFLDSATSGHS 122
Query: 58 GLSVNSLLNAE 68
L + L+ AE
Sbjct: 123 FLDLRQLMQAE 133
>gi|353232893|emb|CCD80248.1| putative hepatocyte nuclear factor 4-alpha (hnf-4-alpha)
[Schistosoma mansoni]
Length = 1061
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 2 YSKLHKQ--LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNG 58
Y+ HK+ +V KDKRNQCR+CR +KCF+ GMK+ AVQ ERD+IS R +Y+ ++ ++
Sbjct: 314 YTCRHKKNCIVTKDKRNQCRFCRFRKCFRVGMKESAVQKERDKISNRHINYDPNSSIHST 373
Query: 59 LSVNSLLNAEMLS 71
+ + LL AE ++
Sbjct: 374 IDLQKLLQAEAIA 386
>gi|256088710|ref|XP_002580469.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Schistosoma
mansoni]
Length = 805
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 2 YSKLHKQ--LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNG 58
Y+ HK+ +V KDKRNQCR+CR +KCF+ GMK+ AVQ ERD+IS R +Y+ ++ ++
Sbjct: 220 YTCRHKKNCIVTKDKRNQCRFCRFRKCFRVGMKESAVQKERDKISNRHINYDPNSSIHST 279
Query: 59 LSVNSLLNAEMLS 71
+ + LL AE ++
Sbjct: 280 IDLQKLLQAEAIA 292
>gi|209156451|pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
gi|209156452|pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERD
Sbjct: 36 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78
>gi|348512222|ref|XP_003443642.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 477
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/31 (87%), Positives = 30/31 (96%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNE 39
+VDKDKRNQCR+CRL KCF+AGMKKEAVQNE
Sbjct: 100 VVDKDKRNQCRFCRLNKCFRAGMKKEAVQNE 130
>gi|170048462|ref|XP_001852944.1| retinoid X receptor alpha [Culex quinquefasciatus]
gi|167870580|gb|EDS33963.1| retinoid X receptor alpha [Culex quinquefasciatus]
Length = 421
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 38/52 (73%)
Query: 31 MKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQVGAVREEVS 82
MKKEAVQNERDRISCRR S EE ++NGLSV LL AE SR GA ++ +
Sbjct: 1 MKKEAVQNERDRISCRRSSLEEVESSNGLSVKFLLRAENFSRHFGAALDDAN 52
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 303 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 362
Query: 67 AEM 69
AE+
Sbjct: 363 AEL 365
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 319 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 378
Query: 67 AEM 69
AE+
Sbjct: 379 AEL 381
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT-ANNGLSVNSLLNA 67
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E T+ ANN + +L A
Sbjct: 166 MIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGEEVESTSGANNDMPTEQILEA 225
Query: 68 EM 69
E+
Sbjct: 226 EL 227
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T AN + V +L
Sbjct: 147 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNESEVEPTSSANEDMPVEKILE 206
Query: 67 AEM 69
AE+
Sbjct: 207 AEL 209
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 232 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 291
Query: 67 AEM 69
AE+
Sbjct: 292 AEL 294
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T ANN + V +L
Sbjct: 160 MIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPVEQILE 219
Query: 67 AEM 69
AE+
Sbjct: 220 AEL 222
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + V+ +L+
Sbjct: 181 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERGDSEVESTSGFNEDMPVDKILD 240
Query: 67 AEM 69
AE+
Sbjct: 241 AEL 243
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 243 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 302
Query: 67 AEM 69
AE+
Sbjct: 303 AEL 305
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 205 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 264
Query: 67 AEM 69
AE+
Sbjct: 265 AEL 267
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 155 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 214
Query: 67 AEM 69
AE+
Sbjct: 215 AEL 217
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 155 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 214
Query: 67 AEM 69
AE+
Sbjct: 215 AEL 217
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 155 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 214
Query: 67 AEM 69
AE+
Sbjct: 215 AEL 217
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 169 LIDKRQRNRCKYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 228
Query: 67 AEM 69
AE+
Sbjct: 229 AEL 231
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 173 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 232
Query: 67 AEM 69
AE+
Sbjct: 233 AEL 235
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 155 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 214
Query: 67 AEM 69
AE+
Sbjct: 215 AEL 217
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 174 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 233
Query: 67 AEM 69
AE+
Sbjct: 234 AEL 236
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T ANN + V +L
Sbjct: 160 MIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPVEQILE 219
Query: 67 AEM 69
AE+
Sbjct: 220 AEL 222
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + V+ +L+
Sbjct: 172 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGESEVESTSSFNEEMPVDKILD 231
Query: 67 AEM 69
AE+
Sbjct: 232 AEL 234
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 184 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 243
Query: 67 AEM 69
AE+
Sbjct: 244 AEL 246
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 167 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSNANEDMPVEKILE 226
Query: 67 AEM 69
AE+
Sbjct: 227 AEL 229
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 149 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 208
Query: 67 AEM 69
AE+
Sbjct: 209 AEL 211
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 208 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 267
Query: 67 AEM 69
AE+
Sbjct: 268 AEL 270
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 178 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSGANEDMPVERILE 237
Query: 67 AEM 69
AE+
Sbjct: 238 AEL 240
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T A+ + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNESEVESTSGASEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 178 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 237
Query: 67 AEM 69
AE+
Sbjct: 238 AEL 240
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 178 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 237
Query: 67 AEM 69
AE+
Sbjct: 238 AEL 240
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 168 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 227
Query: 67 AEM 69
AE+
Sbjct: 228 AEL 230
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 169 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 228
Query: 67 AEM 69
AE+
Sbjct: 229 AEL 231
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 188 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 247
Query: 67 AEM 69
AE+
Sbjct: 248 AEL 250
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E ++AN + V +L
Sbjct: 155 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRSEAEAEPASSANEDMPVEKILE 214
Query: 67 AEM 69
AE+
Sbjct: 215 AEL 217
>gi|324516278|gb|ADY46480.1| Nuclear hormone receptor family member nhr-64 [Ascaris suum]
Length = 257
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
H +VDKD RN CR CR +C ++GMK+EAVQNERD I + S ++T + + +LL
Sbjct: 55 HSCVVDKDHRNTCRRCRFDQCLRSGMKREAVQNERDTIVSHQASSTDSTYSEAY-IATLL 113
Query: 66 NAE 68
AE
Sbjct: 114 KAE 116
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L A
Sbjct: 133 LVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRNKERESEAESTSAVNEEMPVEKILEA 192
Query: 68 EMLSRQVGAVREEVSLFGS 86
EM Q V + S GS
Sbjct: 193 EMAIEQKTEVHADGSSEGS 211
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|324510259|gb|ADY44291.1| Nuclear hormone receptor family member nhr-14 [Ascaris suum]
Length = 462
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
+DKD RN CRYCR +KC GMK EA+QNERDRI
Sbjct: 65 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRI 98
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 195 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 254
Query: 67 AEM 69
AE+
Sbjct: 255 AEL 257
>gi|308476028|ref|XP_003100231.1| CRE-NHR-14 protein [Caenorhabditis remanei]
gi|308265755|gb|EFP09708.1| CRE-NHR-14 protein [Caenorhabditis remanei]
Length = 433
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
+DKD RN CRYCR +KC GMK EA+QNERDRI
Sbjct: 64 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRI 97
>gi|341878517|gb|EGT34452.1| CBN-NHR-14 protein [Caenorhabditis brenneri]
Length = 439
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
+DKD RN CRYCR +KC GMK EA+QNERDRI
Sbjct: 64 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRI 97
>gi|268581075|ref|XP_002645520.1| C. briggsae CBR-NHR-14 protein [Caenorhabditis briggsae]
Length = 440
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
+DKD RN CRYCR +KC GMK EA+QNERDRI
Sbjct: 64 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRI 97
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 174 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILE 233
Query: 67 AEM 69
AE+
Sbjct: 234 AEL 236
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + V+ +L+
Sbjct: 172 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERGESEVESTSSFNEEMPVDKILD 231
Query: 67 AEM 69
AE+
Sbjct: 232 AEL 234
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L A
Sbjct: 133 LVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRNKERESEVESTSAVNEEMPVEKILEA 192
Query: 68 EMLSRQ 73
EM Q
Sbjct: 193 EMAVEQ 198
>gi|71995367|ref|NP_741860.2| Protein NHR-14, isoform a [Caenorhabditis elegans]
gi|44888978|sp|O02151.3|NHR14_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-14
gi|351061749|emb|CCD69597.1| Protein NHR-14, isoform a [Caenorhabditis elegans]
Length = 435
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 4 KLHKQL-VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC--RRPSYEETTANN 57
+ +KQ +DKD RN CRYCR +KC GMK EA+QNERDRI RR + NN
Sbjct: 57 RFNKQCNIDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRRKRSGANSENN 113
>gi|170579273|ref|XP_001894756.1| Nuclear hormone receptor family member nhr-14 [Brugia malayi]
gi|158598517|gb|EDP36393.1| Nuclear hormone receptor family member nhr-14, putative [Brugia
malayi]
Length = 450
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRR------PSYEETTANNG 58
+DKD RN CRYCR +KC GMK EA+QNERDRI S +R P++ + T+ +G
Sbjct: 66 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRSRKRSLPAHLQPTSTSG 121
>gi|71995375|ref|NP_741861.2| Protein NHR-14, isoform b [Caenorhabditis elegans]
gi|351061750|emb|CCD69598.1| Protein NHR-14, isoform b [Caenorhabditis elegans]
Length = 434
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 4 KLHKQL-VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC--RRPSYEETTANN 57
+ +KQ +DKD RN CRYCR +KC GMK EA+QNERDRI RR + NN
Sbjct: 57 RFNKQCNIDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRRKRSGANSENN 113
>gi|25513780|pir||H89591 protein T01B10.4 [imported] - Caenorhabditis elegans
Length = 445
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 4 KLHKQL-VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC--RRPSYEETTANN 57
+ +KQ +DKD RN CRYCR +KC GMK EA+QNERDRI RR + NN
Sbjct: 72 RFNKQCNIDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRRKRSGANSENN 128
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L A
Sbjct: 25 MVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEA 84
Query: 68 EMLSRQVGAVREEVSLFGS 86
EM Q + + S GS
Sbjct: 85 EMAVEQKTELHADGSSGGS 103
>gi|393911648|gb|EFO20938.2| nuclear hormone receptor family member nhr-14 [Loa loa]
Length = 450
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRR------PSYEETTANNG 58
+DKD RN CRYCR +KC GMK EA+QNERDRI S +R P++ + T+ +G
Sbjct: 66 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRSRKRSLPAHLQPTSTSG 121
>gi|312081684|ref|XP_003143130.1| nuclear hormone receptor family member nhr-14 [Loa loa]
Length = 445
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRR------PSYEETTANNG 58
+DKD RN CRYCR +KC GMK EA+QNERDRI S +R P++ + T+ +G
Sbjct: 66 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRSRKRSLPAHLQPTSTSG 121
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L A
Sbjct: 136 MVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEA 195
Query: 68 EMLSRQVGAVREEVSLFGS 86
EM Q + + S GS
Sbjct: 196 EMAVEQKTELHADGSSGGS 214
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECANSGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|402585565|gb|EJW79504.1| hypothetical protein WUBG_09584, partial [Wuchereria bancrofti]
Length = 202
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR-------PSYEETTANNG 58
+DKD RN CRYCR +KC GMK EA+QNERDRI + P++ + T+ +G
Sbjct: 66 IDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRSRKRSLPAHLQPTSTSG 121
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECANSGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T AN + V +L
Sbjct: 213 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKTVNENEVESTSSANEDMPVEKILE 272
Query: 67 AEM 69
AE+
Sbjct: 273 AEL 275
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T A+ + V +L
Sbjct: 203 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERSENEVESTSSASEDMPVEKILE 262
Query: 67 AEM 69
AE+
Sbjct: 263 AEL 265
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + + +L+
Sbjct: 170 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERGESEVESTSSFNEEMPADKILD 229
Query: 67 AEM 69
AE+
Sbjct: 230 AEV 232
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E ++AN + V +L+
Sbjct: 175 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENEVESSSSANEDMPVEKILD 234
Query: 67 AE 68
AE
Sbjct: 235 AE 236
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ+ER R R E T+A N + V +L A
Sbjct: 170 LVDKRQRNRCQYCRYQKCLAMGMKREAVQDERQRNKEREGEVESTSAVNEEMPVEKILEA 229
Query: 68 EMLSRQVGAVREEVSLFGS 86
E+ Q + + S GS
Sbjct: 230 EVAVEQKTELHADGSSGGS 248
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI S T +G N +E+
Sbjct: 52 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSHSSTSPTALPSGEYFNGQPVSEL 109
Query: 70 LSRQVGAVREEVSLFGS 86
+S+ + A + +GS
Sbjct: 110 ISQLLRAEPYPAARYGS 126
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +T + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILE 241
Query: 67 AEMLSRQVGAVREEVSLFGSLLV 89
AE+ AV + +G + V
Sbjct: 242 AEL------AVEPKTESYGDMSV 258
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C++CR KC GMK+EAVQ ER R+ + E+T AN + V +L
Sbjct: 264 LIDKRQRNRCQFCRYMKCLSMGMKREAVQEERQRVKEKGEGEVESTTNANQEMPVERILE 323
Query: 67 AEM 69
AE+
Sbjct: 324 AEL 326
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T AN+ + V +L
Sbjct: 154 MIDKRQRNRCQYCRYMKCLAQGMKREAVQEERQRVKEKGDGEVESTSGANSDMPVEQILE 213
Query: 67 AEM 69
AE+
Sbjct: 214 AEI 216
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T AN+ + V +L
Sbjct: 165 MIDKRQRNRCQYCRYMKCLAQGMKREAVQEERQRVKEKGDGEVESTSGANSDMPVEQILE 224
Query: 67 AEM 69
AE+
Sbjct: 225 AEI 227
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET--TANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+ +AN + V +L
Sbjct: 204 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENEVESSNSANEDMPVEKILE 263
Query: 67 AE 68
AE
Sbjct: 264 AE 265
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 186 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSGGSEDMPVERILE 245
Query: 67 AEM 69
AE+
Sbjct: 246 AEL 248
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L+A
Sbjct: 180 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAELSGAINEEMPVEKILDA 239
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 240 ELAVEQ 245
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 137 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKDRDGEVESTSAVNEEMPVEKILEAE 196
Query: 69 MLSRQVGAVREEVSLFGS 86
M Q + + S GS
Sbjct: 197 MAVEQKTELHADGSSGGS 214
>gi|313219531|emb|CBY30454.1| unnamed protein product [Oikopleura dioica]
Length = 439
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNA 67
+++ RN CR+CRL KCF+AGM++EAVQNERD I P E A LSV L A
Sbjct: 91 IERANRNSCRHCRLIKCFRAGMRREAVQNERDPIR-PAPQRPEPHAKGNLSVKVLETA 147
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 171 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEAE 230
Query: 69 MLSRQ 73
M Q
Sbjct: 231 MAVEQ 235
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 137 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEAE 196
Query: 69 MLSRQ 73
M Q
Sbjct: 197 MAVEQ 201
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 170 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKDRDGEVESTSAVNEEMPVEKILEAE 229
Query: 69 MLSRQVGAVREEVSLFGS 86
M Q + + S GS
Sbjct: 230 MAVEQKTELHADGSSGGS 247
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T++N +S+ LL
Sbjct: 111 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRTKDRDASEVESTSSNPNEMSIERLLE 170
Query: 67 AE 68
AE
Sbjct: 171 AE 172
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L+A
Sbjct: 180 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAELSGAINEEMPVEKILDA 239
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 240 ELAVEQ 245
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L+A
Sbjct: 173 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAELSGAINEEMPVEKILDA 232
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 233 ELAVEQ 238
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 137 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEAE 196
Query: 69 MLSRQ 73
M Q
Sbjct: 197 MAVEQ 201
>gi|47216868|emb|CAG11675.1| unnamed protein product [Tetraodon nigroviridis]
Length = 436
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L AE
Sbjct: 144 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEAE 203
Query: 69 MLSRQVGAVREEVSLFGS 86
M Q + + S GS
Sbjct: 204 MAVEQKTELHADGSSGGS 221
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L+A
Sbjct: 167 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAELSGAINEEMPVEKILDA 226
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 227 ELAVEQ 232
>gi|163676264|gb|ABY40361.1| retinoid x receptor beta b [Carassius auratus]
Length = 207
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ+ER + R YE ++AN + V +L A
Sbjct: 25 LVDKRQRNRCQYCRYQKCLATGMKREAVQDERQKNKERDGDYECSSSANEEMPVEKILEA 84
Query: 68 E 68
E
Sbjct: 85 E 85
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER + + + E N+ + V+ +L AE
Sbjct: 235 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQK-NKEKEDGEPANPNDDMPVDKILEAE 293
Query: 69 MLS 71
++S
Sbjct: 294 LIS 296
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+A N + V +L A
Sbjct: 1 MVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSAVNEEMPVEKILEA 60
Query: 68 EMLSRQVGAVREEVSLFGS 86
E+ Q + + S GS
Sbjct: 61 EVAVEQKTELHTDGSSGGS 79
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T AN + V +L
Sbjct: 102 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNESEVEPTSSANEDMPVEKILE 161
Query: 67 AEM 69
AE+
Sbjct: 162 AEL 164
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + ETT+ N + V+ +L+
Sbjct: 171 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVETTSRFNEDMPVDKILD 230
Query: 67 AEM 69
AE+
Sbjct: 231 AEL 233
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR--RPSYEETTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R ++AN + V +L
Sbjct: 255 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRSESEVESTSSANEDMPVEKILE 314
Query: 67 AEM 69
AE+
Sbjct: 315 AEL 317
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR--RPSYEETTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R ++AN + V +L
Sbjct: 472 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGESEVESSSSANEDMPVEKILE 531
Query: 67 AEM 69
AE+
Sbjct: 532 AEL 534
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATGGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|33318315|gb|AAQ05028.1| RXR gamma [Scophthalmus maximus]
Length = 198
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + V+ +L+
Sbjct: 26 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGESEVESTSSFNEDMPVDKILD 85
Query: 67 AEM 69
AE+
Sbjct: 86 AEV 88
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|268564953|ref|XP_002639282.1| C. briggsae CBR-NHR-69 protein [Caenorhabditis briggsae]
Length = 374
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
V ++KRN CR CRL+KC KAGMK A+QNERD I R+ + EE + ++ L+ AE
Sbjct: 50 VTRNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKTPEEGKED---LIDQLVQAEQ 106
Query: 70 LSRQV 74
+ +Q+
Sbjct: 107 MCQQL 111
>gi|47207654|emb|CAF91378.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ N + V+ +L+
Sbjct: 163 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGDSEVESTSSFNEDMPVDKILD 222
Query: 67 AEM 69
AE+
Sbjct: 223 AEL 225
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR--RPSYEETTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R ++AN + V +L
Sbjct: 265 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRSESEVESTSSANEDMPVEKILE 324
Query: 67 AEM 69
AE+
Sbjct: 325 AEL 327
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR--RPSYEETTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R ++AN + V +L
Sbjct: 273 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGESEVESSSSANEDMPVEKILE 332
Query: 67 AEM 69
AE+
Sbjct: 333 AEL 335
>gi|32563633|ref|NP_492615.2| Protein NHR-69 [Caenorhabditis elegans]
gi|30315986|sp|P91829.2|NHR69_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-69
gi|25005021|emb|CAB05815.2| Protein NHR-69 [Caenorhabditis elegans]
gi|28396038|gb|AAO39182.1| nuclear receptor NHR-69 [Caenorhabditis elegans]
Length = 373
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
V K+KRN CR CRL+KC KAGMK A+QNERD I R+ + T A ++ L+ AE
Sbjct: 50 VTKNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKT---TGAEKEDLIDQLVAAET 106
Query: 70 LSRQV 74
L +Q+
Sbjct: 107 LCQQL 111
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS+ + NG +N
Sbjct: 57 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPPQPSHGQFALTNGDPLN 107
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS+ + NG +N
Sbjct: 48 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPSHGQFALTNGDPLN 98
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ ER + R YE ++AN + V +L A
Sbjct: 133 LVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEA 192
Query: 68 E 68
E
Sbjct: 193 E 193
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ ER + R YE ++AN + V +L A
Sbjct: 133 LVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEA 192
Query: 68 E 68
E
Sbjct: 193 E 193
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L+
Sbjct: 38 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSKDRNENEVESTSSANEDMPVEKILD 97
Query: 67 AEM 69
AE+
Sbjct: 98 AEL 100
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+DK RNQCR CRLKKCF+A M K+AVQ+ER R+P +++ + G
Sbjct: 82 IDKTHRNQCRACRLKKCFEASMNKDAVQHER---GPRKPKFKDVSDMGG 127
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 13 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERNENEVESTSSANEDMPVEKILE 72
Query: 67 AEM 69
AE+
Sbjct: 73 AEL 75
>gi|12000389|gb|AAG21692.1| retinoid X receptor alpha [Neovison vison]
Length = 193
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 8 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 67
Query: 67 AEM 69
AE+
Sbjct: 68 AEL 70
>gi|20271136|gb|AAM18523.1|AF495876_1 retinoid X receptor [Danio rerio]
Length = 133
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + ETT+ N + V+ +L+
Sbjct: 26 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVETTSRFNEDMPVDKILD 85
Query: 67 AEM 69
AE+
Sbjct: 86 AEL 88
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + +L
Sbjct: 155 VIDKRQRNRCQYCRYQKCLSCGMKREAVQEERQRTKDRADSEVESTSGGAPPEMPLERIL 214
Query: 66 NAEM 69
AE+
Sbjct: 215 EAEL 218
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI S T+A G N +E
Sbjct: 98 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPPAHSSASPTSAPGAGEYFNGQPVSE 155
Query: 69 MLSRQVGAVREEVSLFGS 86
++S+ + A S +GS
Sbjct: 156 LISQLLRAEPYPASRYGS 173
>gi|313226358|emb|CBY21502.1| unnamed protein product [Oikopleura dioica]
Length = 472
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNA 67
+++ RN CR+CRL KCF+AGM++EAVQNERD I P E A LSV L A
Sbjct: 124 IERANRNSCRHCRLIKCFRAGMRREAVQNERDPIR-PAPQRPEPHAKGNLSVKVLETA 180
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNAE 68
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI S T+A G N +E
Sbjct: 98 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPPAHSSASPTSAPGAGEYFNGQPVSE 155
Query: 69 MLSRQVGAVREEVSLFGS 86
++S+ + A S +GS
Sbjct: 156 LISQLLRAEPYPASRYGS 173
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 90 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGENEVESTSSANEDMPVEKILE 149
Query: 67 AEM 69
AE+
Sbjct: 150 AEL 152
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT-ANNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+ N + V +L AE
Sbjct: 137 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSVVNEEMPVEKILEAE 196
Query: 69 MLSRQ 73
M Q
Sbjct: 197 MAVEQ 201
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT-ANNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R R E T+ N + V +L AE
Sbjct: 171 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKEREGEVESTSVVNEEMPVEKILEAE 230
Query: 69 MLSRQ 73
M Q
Sbjct: 231 MAVEQ 235
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 92 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 142
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI PS+ + N + N +
Sbjct: 26 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIP---PSHSGGSPNALPAAGDFFNGQP 80
Query: 70 LSRQV 74
+S +
Sbjct: 81 VSELI 85
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 81 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 140
Query: 67 AEM 69
AE+
Sbjct: 141 AEL 143
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 146 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILE 205
Query: 67 AEM 69
AE+
Sbjct: 206 AEL 208
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 61 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 111
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 81 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 140
Query: 67 AEM 69
AE+
Sbjct: 141 AEL 143
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 52 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 102
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 174 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILE 233
Query: 67 AEM 69
AE+
Sbjct: 234 AEL 236
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 81 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 140
Query: 67 AEM 69
AE+
Sbjct: 141 AEL 143
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E +TAN+ + V +L
Sbjct: 169 IIDKRQRNRCQYCRYMKCLNMGMKREAVQEERQRVKEKGEGEVESTSTANSDMPVEKILE 228
Query: 67 AEM 69
AE+
Sbjct: 229 AEL 231
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T AN+ + V +L+
Sbjct: 170 VIDKRQRNRCQYCRYMKCLAMGMKREAVQEERQRVKEKGEGEVESTSSANSDMPVEKVLD 229
Query: 67 AEM 69
AE+
Sbjct: 230 AEL 232
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 114 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 164
>gi|449275308|gb|EMC84181.1| Hepatocyte nuclear factor 4-gamma [Columba livia]
Length = 441
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYC K + + AVQNERDRIS RR +++ N S+++L AE
Sbjct: 92 VVDKDKRNQCRYCLNKLDYYS---FPAVQNERDRISTRRNTFD---GCNIPSISTLSQAE 145
Query: 69 MLSRQV 74
LSRQ+
Sbjct: 146 ALSRQI 151
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 55 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 105
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 66 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 116
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E A G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEVECAGGGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 170
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E +A+NG + V +L
Sbjct: 208 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAESASNGHEDMPVERIL 266
Query: 66 NAEM 69
AE+
Sbjct: 267 EAEL 270
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 81 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILE 140
Query: 67 AEM 69
AE+
Sbjct: 141 AEL 143
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 170
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+N + V +L
Sbjct: 170 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSNGSEDMPVERILE 229
Query: 67 AEM 69
AE+
Sbjct: 230 AEL 232
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI PS++ G+S NSL
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIP---PSHQ------GISPNSL 140
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 117 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 167
>gi|156145618|gb|ABU53622.1| ultraspiracle [Pyrrhocoris apterus]
Length = 256
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
LVDK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V L +
Sbjct: 23 LVDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSFHTDMPVERLRD 82
Query: 67 AEMLSRQVG 75
AE RQ+G
Sbjct: 83 AE---RQIG 88
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 114 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 164
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 169
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 169
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS+ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPSHGQFALTNGDPLN 173
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 122 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 172
>gi|112820305|gb|ABI24014.1| Rxr1 [Oikopleura dioica]
Length = 239
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLNA 67
+DK +RN+C+YCR +KC AGMKKEAVQ+ER +RP+ EE N + + V +L A
Sbjct: 38 IDKRQRNRCQYCRYQKCLLAGMKKEAVQDER-----KRPAAEEDFENPLDEMPVVDILEA 92
Query: 68 E 68
E
Sbjct: 93 E 93
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 169
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P TA +
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHALPGAAPPTAGS 145
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N + ++ +L
Sbjct: 148 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSNLHADMPIDRILE 207
Query: 67 AE 68
AE
Sbjct: 208 AE 209
>gi|312373492|gb|EFR21221.1| hypothetical protein AND_17368 [Anopheles darlingi]
Length = 512
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 35 AVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQVGAVREEVS 82
AVQNERDRISCR+PS ++ + NGLSV LL AE SR GA ++ +
Sbjct: 106 AVQNERDRISCRKPSTDDKSTINGLSVKFLLRAENFSRHFGAALDDAN 153
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + +L
Sbjct: 123 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRTKDRADSEVESTSGGAPPEMPLERIL 182
Query: 66 NAEM-LSRQVGAVRE 79
AE+ + Q G + E
Sbjct: 183 EAELRVESQTGTLSE 197
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + AN + V +L AE
Sbjct: 97 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANEDMPVEKILEAE 156
Query: 69 M 69
+
Sbjct: 157 L 157
>gi|3608382|gb|AAC72725.1| nuclear transcription factor 4 homolog isoform c [Aedes aegypti]
Length = 427
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 31 MKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQVGAVREE 80
+ + VQNERDRISCRRPS E+ +NGLSV LL AE SR GA ++
Sbjct: 3 INQNTVQNERDRISCRRPSMEDIDTSNGLSVKFLLLAENRSRHFGAALDD 52
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 179 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKDRNENEVESTSCANEDMPVEKILE 238
Query: 67 AE 68
AE
Sbjct: 239 AE 240
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + AN + V +L AE
Sbjct: 109 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANEDMPVEKILEAE 168
Query: 69 M 69
+
Sbjct: 169 L 169
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER + + + E N+ + V+ +L AE
Sbjct: 59 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQK-NKEKEDGEPANPNDDMPVDKILEAE 117
Query: 69 MLS 71
++S
Sbjct: 118 LIS 120
>gi|313219082|emb|CBY43294.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLNA 67
+DK +RN+C+YCR +KC AGMKKEAVQ+ER +RP+ EE N + + V +L A
Sbjct: 150 IDKRQRNRCQYCRYQKCLLAGMKKEAVQDER-----KRPAAEEDFENPLDEMPVVDILEA 204
Query: 68 E 68
E
Sbjct: 205 E 205
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R E+T+ N + V+ +L+
Sbjct: 24 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGEIEVESTSSFNEEMPVDKILD 83
Query: 67 AEM 69
AE+
Sbjct: 84 AEL 86
>gi|222431991|gb|ACM50922.1| HNF4alpha10/11/12 [Homo sapiens]
Length = 103
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%), Gaps = 2/36 (5%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKE 34
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKE
Sbjct: 68 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|112984304|ref|NP_001037470.1| protein ultraspiracle homolog [Bombyx mori]
gi|1345734|sp|P49700.1|USP_BOMMO RecName: Full=Protein ultraspiracle homolog; AltName: Full=BmCF1;
AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=RXR type hormone receptor CF1
gi|456395|gb|AAC13750.1| RXR type hormone receptor [Bombyx mori]
Length = 462
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + R +++ LS+ LL E
Sbjct: 157 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARRTEDAHPSSSVQELSIERLLELE 216
Query: 69 ML 70
L
Sbjct: 217 AL 218
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+N +S++ +L
Sbjct: 138 IIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNRERSENEVESTSNIQGDISIDRILE 197
Query: 67 AEML 70
AE+
Sbjct: 198 AELW 201
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKC K GM++EAVQ R R+S + S + T NN
Sbjct: 107 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMSHPQTSPGQYTLNN 152
>gi|313244758|emb|CBY15470.1| unnamed protein product [Oikopleura dioica]
Length = 431
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN--NGLSVNSLLNA 67
+DK +RN+C+YCR +KC AGMKKEAVQ+ER +RP+ EE N + + V +L A
Sbjct: 150 IDKRQRNRCQYCRYQKCLLAGMKKEAVQDER-----KRPAAEEDFENPLDEMPVVDILEA 204
Query: 68 E 68
E
Sbjct: 205 E 205
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR KKC GMK+EAVQ ER R R S E+T+N
Sbjct: 18 IIDKRQRNRCQYCRYKKCLDMGMKREAVQEERQRTKDRDTSEVESTSN 65
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T++ + V +L
Sbjct: 187 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMPVERILE 246
Query: 67 AEMLSRQVGAVREEVSLFG 85
AE+ AV ++ FG
Sbjct: 247 AEL------AVEPKIEAFG 259
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 90 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 140
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI PS+ +G+S NSL
Sbjct: 98 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIP---PSH------SGISPNSL 141
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T++ + V +L
Sbjct: 189 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMPVERILE 248
Query: 67 AEMLSRQVGAVREEVSLFG 85
AE+ AV ++ FG
Sbjct: 249 AEL------AVDPKIEAFG 261
>gi|148696965|gb|EDL28912.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_c [Mus
musculus]
Length = 241
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI--------SCRRPSYEETTANNGLSV 61
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI +C P G V
Sbjct: 43 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHALPGPAACSPPGATGVEPFTGPPV 100
Query: 62 NSLLNAEML 70
+ L+ A++L
Sbjct: 101 SELI-AQLL 108
>gi|148696963|gb|EDL28910.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_a [Mus
musculus]
Length = 270
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER------DRISCRRPSYEETTANNGLSVNS 63
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R +C P G V+
Sbjct: 94 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAACSPPGATGVEPFTGPPVSE 153
Query: 64 LLNAEML 70
L+ A++L
Sbjct: 154 LI-AQLL 159
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T++ + V +L
Sbjct: 189 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMPVERILE 248
Query: 67 AEMLSRQVGAVREEVSLFG 85
AE+ AV ++ FG
Sbjct: 249 AEL------AVDPKIEAFG 261
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T N + V+ +L+
Sbjct: 174 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTCSFNEEMPVDKILD 233
Query: 67 AEM 69
AE+
Sbjct: 234 AEL 236
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 47 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERNENEVESTSCANEDMPVEKILE 106
Query: 67 AE 68
AE
Sbjct: 107 AE 108
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +T + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILE 241
Query: 67 AEMLSRQVGAVREEVSLFGSLLV 89
AE+ AV + +G + V
Sbjct: 242 AEL------AVEPKTESYGDMSV 258
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 89 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 139
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 145
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRLKKCF+ GM K+AVQ+ER
Sbjct: 120 VVDKTHRNQCRACRLKKCFEVGMNKDAVQHER 151
>gi|156630611|gb|ABU89804.1| retinoid X receptor [Mytilus galloprovincialis]
Length = 126
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R + E+T ANN + V +L
Sbjct: 4 IIDKRQRNRCQYCRYMKCLTMGMKREAVQEERQRNKEKGEGEVESTSGANNDMPVEKILE 63
Query: 67 AEM 69
AE+
Sbjct: 64 AEL 66
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLNA 67
+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ N + V+ +L+A
Sbjct: 173 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEDMPVDKILDA 232
Query: 68 EM 69
E+
Sbjct: 233 EL 234
>gi|4378479|gb|AAD19578.1| retinoic acid receptor [Sus scrofa]
Length = 136
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLNA 67
+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L A
Sbjct: 1 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGENEVESTSSANEDMPVEKILEA 60
Query: 68 EM 69
E+
Sbjct: 61 EL 62
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI PS+ +G+S NSL
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIP---PSH------SGISPNSL 140
>gi|308494274|ref|XP_003109326.1| CRE-NHR-69 protein [Caenorhabditis remanei]
gi|308246739|gb|EFO90691.1| CRE-NHR-69 protein [Caenorhabditis remanei]
Length = 372
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
V ++KRN CR CRL+KC KAGMK A+QNERD I R+ + T L ++ L+ AE
Sbjct: 50 VTRNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKA--SATEKEDL-IDQLVAAET 106
Query: 70 LSRQV 74
L +Q+
Sbjct: 107 LCQQL 111
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 166 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECANSGHEDMPVERIL 224
Query: 66 NAEM 69
AE+
Sbjct: 225 EAEL 228
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEADCANSGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLNA 67
+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ N + V+ +L+A
Sbjct: 127 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEDMPVDKILDA 186
Query: 68 EM 69
E+
Sbjct: 187 EL 188
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +T + + V +L
Sbjct: 103 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILE 162
Query: 67 AEMLSRQVGAVREEVSLFGSLLV 89
AE+ AV + +G + V
Sbjct: 163 AEL------AVEPKTESYGDMSV 179
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E A+NG + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECASNGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
VD+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ NG +N
Sbjct: 98 VDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPNQPNPSHYALTNGDHLN 148
>gi|409194682|gb|AFV31631.1| retinoid X receptor alpha, partial [Acanthopagrus schlegelii]
Length = 196
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 47 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKDRNENEVESTSCANEDMPVEKILE 106
Query: 67 AE 68
AE
Sbjct: 107 AE 108
>gi|403183182|gb|EAT36598.2| AAEL011323-PB, partial [Aedes aegypti]
Length = 421
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 36 VQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQVGAVREE 80
VQNERDRISCRRPS E+ +NGLSV LL AE SR GA ++
Sbjct: 3 VQNERDRISCRRPSMEDIDTSNGLSVKFLLLAENRSRHFGAALDD 47
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS------ 63
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 155 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLNGHCYLSG 212
Query: 64 ----LLNAEMLSRQVGAVREEVSLFGS 86
LL AE R + A S +GS
Sbjct: 213 YISLLLRAEPTPRLLRAGPYPTSRYGS 239
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ + ++V +L
Sbjct: 190 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERHRSREKSDTEAESTSITSEEMAVERILE 249
Query: 67 AEMLSRQVGAVREEVSLFG 85
AE+ AV ++ FG
Sbjct: 250 AEL------AVEPKIEAFG 262
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET-TANNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R + E T A + V+ +L AE
Sbjct: 221 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGTGGAPEEMPVDRILEAE 280
Query: 69 MLSRQ 73
+ Q
Sbjct: 281 LAVEQ 285
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 145
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 129 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 176
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 129 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 176
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T++ + V +L
Sbjct: 187 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSSGSEDMPVERILE 246
Query: 67 AEM 69
AE+
Sbjct: 247 AEL 249
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T++ + V +L
Sbjct: 187 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSSGSEDMPVERILE 246
Query: 67 AEM 69
AE+
Sbjct: 247 AEL 249
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P + + NG
Sbjct: 126 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRVPPTQPHHGQFALTNG 172
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 59 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 118
Query: 67 AEM 69
AE+
Sbjct: 119 AEL 121
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 104 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 154
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 18 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKDRDTSEVESTSN 65
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRLKKCF+ GM K+AVQ+ER
Sbjct: 78 MVDKTHRNQCRACRLKKCFEVGMNKDAVQHER 109
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P + + NG
Sbjct: 126 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRVPPTQPHHGQFALTNG 172
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 130 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 177
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 145
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L A
Sbjct: 134 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAEFSGAINEEMPVEKILEA 193
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 194 ELAVEQ 199
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 18 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 65
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P + + NG
Sbjct: 45 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRVPPTQPHHGQFALTNG 91
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQN------ERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAV + +R R+ +P + + NG
Sbjct: 461 IDQHHRNQCQYCRLKKCLKVGMRREAVVSLFTAAVQRGRVPPTQPHHGQFALTNG 515
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 18 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 65
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L A
Sbjct: 134 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAELSGAINEEMPVEKILEA 193
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 194 ELAVEQ 199
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L A
Sbjct: 171 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERDGEAEFSGAINEEMPVEKILEA 230
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 231 ELAVEQ 236
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P + + NG
Sbjct: 126 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRVPPTQPHHGQFALTNG 172
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria
chalumnae]
Length = 274
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 19 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 69
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 80 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 110
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T AN + V +L
Sbjct: 497 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKDKNENEVESTSCANEDMPVEKILE 556
Query: 67 AE 68
AE
Sbjct: 557 AE 558
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER------DRISCRRPSYEETTANNGLSVN 62
++DK +RN+C+YCR +KC GMK+EAVQ ER D I P+Y+ + V+
Sbjct: 145 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNREKDEIDLNNPNYD-------MPVD 197
Query: 63 SLLNAEMLS 71
+L AE+ S
Sbjct: 198 KILEAELAS 206
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 130 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 180
>gi|308496134|ref|XP_003110255.1| CRE-NHR-88 protein [Caenorhabditis remanei]
gi|308245092|gb|EFO89044.1| CRE-NHR-88 protein [Caenorhabditis remanei]
Length = 591
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
+DKD+RN CRYCR ++C GM+ EA++ +RD I ++ ++ + SL +
Sbjct: 80 IDKDQRNACRYCRFQRCLTVGMEPEAIRPDRDVIGKQKNPRKKKMKAESSNETSLPSPNG 139
Query: 70 LSRQVGAVREEVSLFGSLL 88
V A E+V++ LL
Sbjct: 140 CDSPVSAANEDVNILTFLL 158
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 131 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 181
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 100 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 130
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 1103 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 1153
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 129 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 179
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 130 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 180
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 127 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 177
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 7/66 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP---SYEETTA--NNGLSVNS 63
+VDK +RN+C+YCR +KC GM++EAVQ ER R +P S E+T+ +N + V
Sbjct: 205 MVDKRQRNRCQYCRYQKCIGMGMRREAVQEERQRKD--KPTGDSQVESTSGTSNDMPVEK 262
Query: 64 LLNAEM 69
+L+AE+
Sbjct: 263 ILDAEL 268
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 79 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 129
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C++CR KC GMK+EAVQ ER R+ + E+T AN+ + V +L
Sbjct: 163 MIDKRQRNRCQFCRYMKCLAQGMKREAVQEERQRVKEKGDGEVESTSGANSDMPVEHVLE 222
Query: 67 AEM 69
AE+
Sbjct: 223 AEV 225
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 12/71 (16%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL-LNAE 68
VDK RNQC+ CRLKKC +AGM K+AVQNER +TA + ++S+ L+AE
Sbjct: 80 VDKAHRNQCQACRLKKCLQAGMNKDAVQNERQ---------PRSTAQ--VRLDSIELDAE 128
Query: 69 MLSRQVGAVRE 79
+ V A R+
Sbjct: 129 LPPEHVAATRD 139
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 131 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 181
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRLKKCF+ GM K+AVQ+ER
Sbjct: 78 MVDKTHRNQCRACRLKKCFEVGMNKDAVQHER 109
>gi|341886864|gb|EGT42799.1| hypothetical protein CAEBREN_14643 [Caenorhabditis brenneri]
Length = 373
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS--VNSLLNA 67
V ++KRN CR CRL+KC KAGMK A+QNERD I R+ T+ NG + L+ A
Sbjct: 50 VTRNKRNACRACRLQKCIKAGMKSNAIQNERDAIGKRK-----KTSVNGKQDLIEQLVEA 104
Query: 68 EMLSRQV 74
E L +Q+
Sbjct: 105 ENLCQQL 111
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 130
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 102 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 132
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
LVDK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 126 LVDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSFHTDMPVERILE 185
Query: 67 AE 68
AE
Sbjct: 186 AE 187
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 104 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 134
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP-----SYEETTANNGLSVNSL 64
+ K RNQC++CRL+KCFK GM+KEAVQ ER + R + +E T ++ ++NSL
Sbjct: 74 ITKANRNQCQFCRLQKCFKVGMRKEAVQKERHTSTIRADRNSGKTEKEMTPDSETAINSL 133
Query: 65 L 65
+
Sbjct: 134 I 134
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 129 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 179
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 125 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 175
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRLKKCF+ GM K+AVQ+ER
Sbjct: 78 VVDKTHRNQCRACRLKKCFEVGMNKDAVQHER 109
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 130
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 89 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 139
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI PS + G+S NSL
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIP---PSQQ------GISPNSL 140
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 121 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 171
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 73 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 118
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 54 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 104
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 98 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 128
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 130
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 127 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 177
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 125 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 175
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 65 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 115
>gi|312074761|ref|XP_003140115.1| hypothetical protein LOAG_04530 [Loa loa]
gi|307764723|gb|EFO23957.1| hypothetical protein LOAG_04530 [Loa loa]
Length = 395
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR---PSYEE 52
VDK+ R CR CR KKC K GM KEA+Q RD I CRR P Y++
Sbjct: 59 VDKETRKACRACRYKKCLKMGMTKEALQPRRDLIGCRRYRQPDYQQ 104
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 80 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 110
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ ++ + + +L
Sbjct: 153 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212
Query: 67 AE 68
AE
Sbjct: 213 AE 214
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L A
Sbjct: 171 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGRERDGEAELSGAINEEMPVEKILEA 230
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 231 ELAVEQ 236
>gi|197127315|gb|ACH43813.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 209
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLNA 67
+D+ RNQC+YCRLKKC GM++EAVQ R R+ +P++ + NG L+ +S L+
Sbjct: 119 IDQHHRNQCQYCRLKKCLXVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLNCHSYLSG 176
Query: 68 EMLSRQVGAVREEVSLFGS 86
+S + A S FGS
Sbjct: 177 -YISLLLRAEPYPTSRFGS 194
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 24 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 74
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ ++ + + +L
Sbjct: 153 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212
Query: 67 AE 68
AE
Sbjct: 213 AE 214
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 105 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 155
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R E + A N + V +L A
Sbjct: 171 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGRERDGEAELSGAINEEMPVEKILEA 230
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 231 ELAVEQ 236
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 105 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 135
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + + +L
Sbjct: 18 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPIERILE 77
Query: 67 AE 68
AE
Sbjct: 78 AE 79
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 267 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 317
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS 63
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 230 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLNG 281
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETT--ANNGLSVNSLL 65
+VDK +RN+C+YCR +KC GM++EAVQ ER R E E+T AN+ + V +L
Sbjct: 255 IVDKRQRNRCQYCRYQKCIAMGMRREAVQEERQRKDKAGGDGEVESTSNANSDMPVEKIL 314
Query: 66 NAEM 69
AE+
Sbjct: 315 EAEI 318
>gi|146186458|gb|ABQ09281.1| retinoid X receptor alpha 2 [Oryzias latipes]
Length = 118
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T N + V+ +L+
Sbjct: 47 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTCSFNEEMPVDKILD 106
Query: 67 AEM 69
AE+
Sbjct: 107 AEL 109
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRLKKC +AGM K+AVQ+ER
Sbjct: 63 VDKTHRNQCRACRLKKCLEAGMNKDAVQHER 93
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ ++ + + +L
Sbjct: 153 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212
Query: 67 AE 68
AE
Sbjct: 213 AE 214
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 73 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 103
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 130 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 180
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group F member 6, partial [Ovis aries]
Length = 382
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 64 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 94
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|171362735|dbj|BAG14374.1| retinoid X receptor gamma homolog [Lepisosteus platyrhinchus]
Length = 285
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ N + V +L
Sbjct: 38 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGREKSDNEVESTSNYNEDMPVEKILE 97
Query: 67 AEM 69
AE+
Sbjct: 98 AEL 100
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|28628002|gb|AAO18155.1| USP-RXR [unidentified wasp FB-2002]
Length = 285
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + V +L
Sbjct: 27 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPVERILE 86
Query: 67 AE 68
AE
Sbjct: 87 AE 88
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ ++ + + +L
Sbjct: 166 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 225
Query: 67 AE 68
AE
Sbjct: 226 AE 227
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 73 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 103
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 170
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 130 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 180
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ ++ + + +L
Sbjct: 131 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 190
Query: 67 AE 68
AE
Sbjct: 191 AE 192
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQ 37
+D+ RNQC+YCRLKKCF+ GM+KEAVQ
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ 128
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 173
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 170
>gi|60892894|gb|AAX37293.1| nuclear receptor usp/RXR, partial [Caliroa cerasi]
Length = 258
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + V +L
Sbjct: 25 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPVERILE 84
Query: 67 AE 68
AE
Sbjct: 85 AE 86
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 438 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 468
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 169
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 82 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 112
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS--YEETTANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + T N + V +
Sbjct: 155 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSKEGKDGEVVSTTNPNEDMPVEKIQE 214
Query: 67 AEM 69
AEM
Sbjct: 215 AEM 217
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P + + NG
Sbjct: 131 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPHHGQFALTNG 177
>gi|262070643|gb|ACY08800.1| ultraspiracle, partial [Tribolium confusum]
Length = 144
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+N
Sbjct: 18 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEVESTSN 65
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + T +N+
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVRLDGTKSNS 131
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
++DK +RN+C+YCR +KC GMKKEAVQ ER + +E + G + V+ +L
Sbjct: 212 IIDKRQRNRCQYCRYQKCITMGMKKEAVQEERQ----KNREQDECHGDGGHDDMPVDKIL 267
Query: 66 NAEMLS 71
AE+ S
Sbjct: 268 QAELAS 273
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 118 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 168
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 90 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 140
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 173
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|341885951|gb|EGT41886.1| hypothetical protein CAEBREN_19472 [Caenorhabditis brenneri]
gi|341897168|gb|EGT53103.1| hypothetical protein CAEBREN_18824 [Caenorhabditis brenneri]
Length = 363
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP--SYEETTANNGLSVNSLLNA 67
VDK+KRN CR CR C + GMK+ AVQ ERDRI RP + N ++SL+ A
Sbjct: 73 VDKEKRNACRKCRFDVCLRKGMKRNAVQTERDRI---RPLNALIAGLGNEDPLLDSLIRA 129
Query: 68 EMLSRQV 74
E +R++
Sbjct: 130 EAATREL 136
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 110 VVDKTHRNQCQACRLKKCLQMGMNKDAVQNER 141
>gi|407186432|gb|AFT63499.1| ultraspiracle [Bradysia coprophila]
Length = 447
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-----ETTANNGLSVNS 63
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +P + T++ L+V+
Sbjct: 152 IIDKRQRNRCQYCRYQKCLVCGMKREAVQEERQRGAKLQPKQQNDDLNPTSSVRDLTVDR 211
Query: 64 LLNAEMLS 71
++ AE +S
Sbjct: 212 IMEAEQMS 219
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/32 (75%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQC+ CRLKKC AGM K+AVQNER
Sbjct: 78 LVDKAHRNQCQACRLKKCLDAGMNKDAVQNER 109
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/32 (75%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRLKKCF AGM K AVQ+ER
Sbjct: 79 VVDKAHRNQCRACRLKKCFDAGMNKHAVQHER 110
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ N + V +L
Sbjct: 187 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKEKNENEVESTSCVNEDMPVEKILE 246
Query: 67 AE 68
AE
Sbjct: 247 AE 248
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|557698|gb|AAC52314.1| COUP-TFI, partial [Rattus norvegicus]
Length = 129
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS 63
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 13 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLNG 64
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 119 LVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 150
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E A++G + V +L
Sbjct: 170 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAKGASSGHEDMPVERIL 228
Query: 66 NAEM 69
AE+
Sbjct: 229 EAEL 232
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++++ + V +L
Sbjct: 59 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILE 118
Query: 67 AEM 69
AE+
Sbjct: 119 AEL 121
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T++ + ++ +L
Sbjct: 147 VIDKRQRNRCQYCRYQKCLSCGMKREAVQEERQRTKERGENEVESTSSGQAEMPIDRILE 206
Query: 67 AEM 69
AE+
Sbjct: 207 AEL 209
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 97 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 127
>gi|426256480|ref|XP_004021868.1| PREDICTED: retinoic acid receptor beta isoform 2 [Ovis aries]
Length = 455
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|115532041|ref|NP_001021042.2| Protein NHR-64, isoform a [Caenorhabditis elegans]
gi|114152849|sp|O44960.2|NHR64_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-64
gi|28396028|gb|AAO39177.1| nuclear receptor NHR-64 [Caenorhabditis elegans]
gi|351059764|emb|CCD67352.1| Protein NHR-64, isoform a [Caenorhabditis elegans]
Length = 369
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSV------NS 63
VDK KRN CR CR C + GM+++AVQ ERDRI RP+ + +NG V ++
Sbjct: 71 VDKAKRNSCRKCRFDVCLRKGMRRDAVQTERDRI---RPANPLSNGSNGGIVPDDPLLDT 127
Query: 64 LLNAEMLSR 72
L+ AE +R
Sbjct: 128 LIRAEASTR 136
>gi|308481111|ref|XP_003102761.1| CRE-NHR-4 protein [Caenorhabditis remanei]
gi|308260847|gb|EFP04800.1| CRE-NHR-4 protein [Caenorhabditis remanei]
Length = 495
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
V K+ RN CR CRLKKCF+ GM ++VQNERDR A NG+ + SL
Sbjct: 95 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR-----------NAKNGMGMGSL 138
>gi|380791717|gb|AFE67734.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 240
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 145
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E A++G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAKGASSGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 32 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 91
Query: 67 AEM 69
AE+
Sbjct: 92 AEL 94
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 285 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 315
>gi|308453680|ref|XP_003089537.1| hypothetical protein CRE_22212 [Caenorhabditis remanei]
gi|308239884|gb|EFO83836.1| hypothetical protein CRE_22212 [Caenorhabditis remanei]
Length = 495
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 11/55 (20%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSL 64
V K+ RN CR CRLKKCF+ GM ++VQNERDR A NG+ + SL
Sbjct: 95 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR-----------NAKNGMGMGSL 138
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++++ + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|345789100|ref|XP_003433175.1| PREDICTED: retinoic acid receptor beta [Canis lupus familiaris]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 166 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 225
Query: 67 AEM 69
AE+
Sbjct: 226 AEL 228
>gi|339248557|ref|XP_003373266.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
gi|316970665|gb|EFV54558.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
Length = 426
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 4/41 (9%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEA----VQNERDRI 43
K ++D+DKRN CR+CR +KC AGM+KE VQNERD+I
Sbjct: 127 KCVIDRDKRNSCRHCRFQKCLAAGMRKEGPLDTVQNERDQI 167
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 59 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 118
Query: 67 AEM 69
AE+
Sbjct: 119 AEL 121
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++++ + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFDVGMNKDAVQHER 110
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 72 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 103
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 150 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 209
Query: 67 AEM 69
AE+
Sbjct: 210 AEL 212
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 138 IIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 197
Query: 67 AE 68
AE
Sbjct: 198 AE 199
>gi|301782149|ref|XP_002926489.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Ailuropoda
melanoleuca]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 38/51 (74%), Gaps = 5/51 (9%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS---YEETTANN 57
+D+ RNQC++CRLKKC KAGM+K+AVQ R R++ ++ + +E+ T NN
Sbjct: 210 IDQHHRNQCQHCRLKKCLKAGMRKDAVQ--RGRLNSQQGAAQVFEDATVNN 258
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 375 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 405
>gi|339236037|ref|XP_003379573.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
gi|316977756|gb|EFV60819.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
Length = 502
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP--SYEETTAN--NGLSVNSL 64
++DK +RN+C+YCR +KC GMK+EAVQ ER R+ R E+T+N + + + +
Sbjct: 217 VIDKRQRNRCQYCRYQKCLIMGMKREAVQEERQRLRGDRSENGEPESTSNCISDIPPDRV 276
Query: 65 LNAEMLSRQV--GAVREEVSLFGSLLV 89
L AE+++ ++ G ++ V + LV
Sbjct: 277 LEAELMADKILLGVPQDTVDAYFVQLV 303
>gi|338715049|ref|XP_003363197.1| PREDICTED: retinoic acid receptor beta [Equus caballus]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E+T+ + + + +L
Sbjct: 131 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPIERILE 190
Query: 67 AE 68
AE
Sbjct: 191 AE 192
>gi|291399722|ref|XP_002716265.1| PREDICTED: retinoic acid receptor, beta isoform 1 [Oryctolagus
cuniculus]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|28628004|gb|AAO18150.1| USP-RXR [Periplaneta americana]
Length = 300
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 27 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 86
Query: 67 AE 68
AE
Sbjct: 87 AE 88
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 144 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERADSEVECTSGGHEDMPVERILE 203
Query: 67 AEM 69
AE+
Sbjct: 204 AEL 206
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 131 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 190
Query: 67 AE 68
AE
Sbjct: 191 AE 192
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 138 IIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 197
Query: 67 AE 68
AE
Sbjct: 198 AE 199
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|28628010|gb|AAO18153.1| USP-RXR [Leptopilina heterotoma]
Length = 283
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L+
Sbjct: 27 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQNEVESTSSLHADMPVERILD 86
Query: 67 AE 68
AE
Sbjct: 87 AE 88
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N + SL+
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVRLDSMESNTEPRLESLV 139
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRR 47
+D+ RNQC+YCRLKKCF+ GM+KE + ER + RR
Sbjct: 70 IDQHHRNQCQYCRLKKCFRVGMRKEGEERERKKGKERR 107
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 80 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 110
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 13 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 43
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 173
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN--GLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T++ + V +L
Sbjct: 189 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERSENEVESTSSGHEDMPVERILE 248
Query: 67 AEM 69
AE+
Sbjct: 249 AEL 251
>gi|221043202|dbj|BAH13278.1| unnamed protein product [Homo sapiens]
Length = 382
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + +L
Sbjct: 125 IIDKRQRNRCQYCRYQKCLSCGMKREAVQEERQRTKDRADNEVESTSGGAPAEMPLERIL 184
Query: 66 NAEM 69
AE+
Sbjct: 185 EAEL 188
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P T++ +
Sbjct: 648 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPGAVATSSGS 693
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 173 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 232
Query: 67 AE 68
AE
Sbjct: 233 AE 234
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET-TANNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R + E A + V+ +L AE
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDADGEGAGGAPEEMPVDRILEAE 307
Query: 69 MLSRQ 73
+ Q
Sbjct: 308 LAVEQ 312
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+DK RNQCR CRL KCF A M K+AVQ+ER R+P + T+ N
Sbjct: 61 IDKTHRNQCRACRLNKCFIAAMNKDAVQHER---GPRKPKHNITSKEN 105
>gi|350591001|ref|XP_003483182.1| PREDICTED: retinoic acid receptor beta [Sus scrofa]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ +N + + +L+
Sbjct: 34 VIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNKEKNDNEVESTSSIHNDMPLERILD 93
Query: 67 AEM 69
AE+
Sbjct: 94 AEL 96
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 131 IIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 190
Query: 67 AE 68
AE
Sbjct: 191 AE 192
>gi|1718061|sp|P54779.1|USP_MANSE RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|1304738|gb|AAB64234.1| MsUSP-1 protein [Manduca sexta]
Length = 461
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 156 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDAHPSSSVQELSIERLLEIE 215
Query: 69 ML 70
L
Sbjct: 216 SL 217
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
VD+ RNQC++CRLKKCFK GM++EAVQ+ R ++
Sbjct: 53 VDQHHRNQCQHCRLKKCFKVGMRREAVQSGRHKV 86
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD--RISCRRPSYEETTANNGLSVNSLLN 66
+VDK RNQC+ CRLKKC GM K+AVQNER + RP E +N +
Sbjct: 183 VVDKAHRNQCQACRLKKCLNKGMNKDAVQNERQPRNTATIRPPAEIDFSN---------S 233
Query: 67 AEMLSRQVGAVREEVSLFG 85
A S GA+ VS+ G
Sbjct: 234 AVFFSDYGGAITTAVSMSG 252
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 139 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPASQP 175
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 161 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 220
Query: 67 AE 68
AE
Sbjct: 221 AE 222
>gi|354474027|ref|XP_003499233.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Cricetulus
griseus]
Length = 455
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCR--RPSYEETTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R ++AN + V +L
Sbjct: 118 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGESEVESSSSANEDMPVEKILE 177
Query: 67 AEM 69
AE+
Sbjct: 178 AEL 180
>gi|187940918|gb|ACD39740.1| ultraspiracle protein [Spodoptera exigua]
Length = 412
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 104 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDAHPSSSVQELSIERLLEME 163
Query: 69 ML 70
L
Sbjct: 164 SL 165
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 80 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 110
>gi|357621270|gb|EHJ73160.1| ultraspiracle-like protein [Danaus plexippus]
Length = 423
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 159 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGAEDVHPSSSVQELSIERLLEME 218
Query: 69 ML 70
L
Sbjct: 219 SL 220
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 93 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 123
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 139 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 198
Query: 67 AE 68
AE
Sbjct: 199 AE 200
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 192 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 223
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKE-----AVQNERDRISCRRPSYEETT--ANNGLSV 61
++DK +RN+C+YCR KC GMK+E AVQ ER R+ + E+T AN+ + V
Sbjct: 165 MIDKRQRNRCQYCRYMKCLAQGMKREACLSSAVQEERQRVKEKGDGEVESTSGANSDMPV 224
Query: 62 NSLLNAEM 69
+L AE+
Sbjct: 225 EQILEAEI 232
>gi|209489486|gb|ACI49244.1| hypothetical protein Csp3_JD06.010 [Caenorhabditis angaria]
Length = 510
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 11/51 (21%)
Query: 12 KDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
K+ RN CR CRLKKCF+ GM ++VQNERDR A NGL N
Sbjct: 106 KENRNVCRSCRLKKCFEVGMNPDSVQNERDR-----------NAKNGLMAN 145
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 151 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 210
Query: 67 AE 68
AE
Sbjct: 211 AE 212
>gi|133494|sp|P22605.1|RARB_MOUSE RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
Length = 482
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 158 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 202
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 114
>gi|268537280|ref|XP_002633776.1| C. briggsae CBR-NHR-4 protein [Caenorhabditis briggsae]
Length = 490
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
V K+ RN CR CRLKKCF+ GM ++VQNERDR
Sbjct: 94 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR 126
>gi|344288073|ref|XP_003415775.1| PREDICTED: retinoic acid receptor beta isoform 2 [Loxodonta
africana]
Length = 455
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 175
>gi|363809055|dbj|BAL41655.1| ultraspiracle protein [Scirpophaga incertulas]
Length = 408
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 103 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTDDAHPSSSVQELSIERLLEME 162
Query: 69 ML 70
L
Sbjct: 163 SL 164
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 88 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 118
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN--GLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T++ + V +L
Sbjct: 192 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAENEVESTSSGHEDMPVERILE 251
Query: 67 AEM 69
AE+
Sbjct: 252 AEL 254
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 52 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 111
Query: 67 AE 68
AE
Sbjct: 112 AE 113
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 190 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 221
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 52 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 111
Query: 67 AE 68
AE
Sbjct: 112 AE 113
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + +++ LS+ L+ E
Sbjct: 27 LIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAAKGQEEAHPSSSVQELSIERLIEIE 86
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR-ISCRRPSYEE--------TTANNGL 59
LVDK +RN+C+YCR +KC GMK+E VQ+ER R + R +E + AN +
Sbjct: 184 LVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAANEEM 243
Query: 60 SVNSLLNAEMLSRQVGAVREEVSLFGS 86
V +L AEM Q + + S GS
Sbjct: 244 PVEKILEAEMAVEQKTELHADGSSGGS 270
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T A+ + V +L
Sbjct: 163 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKDKNENEVESTSCASEDMPVEKILE 222
Query: 67 AE 68
AE
Sbjct: 223 AE 224
>gi|197304231|dbj|BAG69193.1| retinoid X receptor gamma [Coturnix japonica]
Length = 122
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + V +L
Sbjct: 48 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSGGSEDMPVERILE 107
Query: 67 AEM 69
AE+
Sbjct: 108 AEL 110
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 153 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 183
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR-ISCRRPSYEE--------TTANNGL 59
LVDK +RN+C+YCR +KC GMK+E VQ+ER R + R +E + AN +
Sbjct: 168 LVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAANEEM 227
Query: 60 SVNSLLNAEMLSRQVGAVREEVSLFGS 86
V +L AEM Q + + S GS
Sbjct: 228 PVEKILEAEMAVEQKTELHADGSSGGS 254
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR-ISCRRPSYEE--------TTANNGL 59
LVDK +RN+C+YCR +KC GMK+E VQ+ER R + R +E + AN +
Sbjct: 135 LVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAANEEM 194
Query: 60 SVNSLLNAEMLSRQVGAVREEVSLFGS 86
V +L AEM Q + + S GS
Sbjct: 195 PVEKILEAEMAVEQKTELHADGSSGGS 221
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 249 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 285
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 114
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|17541658|ref|NP_501775.1| Protein NHR-4 [Caenorhabditis elegans]
gi|10720135|sp|O45436.2|NHR4_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-4
gi|4139072|gb|AAD03681.1| nuclear receptor NHR-4 [Caenorhabditis elegans]
gi|6434291|emb|CAB03044.2| Protein NHR-4 [Caenorhabditis elegans]
Length = 492
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
V K+ RN CR CRLKKCF+ GM ++VQNERDR
Sbjct: 94 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR 126
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 289 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 321
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 92 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 122
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRLKKC +AGM K+AVQ+ER
Sbjct: 62 VDKTHRNQCRACRLKKCVEAGMNKDAVQHER 92
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 90 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 120
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 138 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 197
Query: 67 AE 68
AE
Sbjct: 198 AE 199
>gi|224045380|ref|XP_002197385.1| PREDICTED: retinoic acid receptor beta isoform 1 [Taeniopygia
guttata]
Length = 448
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E+T N
Sbjct: 124 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQESTEN 170
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 124 IVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 155
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 85 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 115
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 189 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 220
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|224045384|ref|XP_002197406.1| PREDICTED: retinoic acid receptor beta isoform 3 [Taeniopygia
guttata]
Length = 434
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E+T N
Sbjct: 110 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQESTEN 156
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 293 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 323
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 76 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 107
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS 60
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS L+
Sbjct: 25 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPSQPSLPGLPGQFALT 73
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAV ER R R S E+T+ ++ + + +L
Sbjct: 153 IIDKRQRNRCQYCRYQKCLAMGMKREAVHEERQRTKERDQSEVESTSSLHSDMPIERILE 212
Query: 67 AE 68
AE
Sbjct: 213 AE 214
>gi|365784340|dbj|BAL42859.1| ultraspiracle-like protein, partial [Megoura crassicauda]
Length = 203
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE----TTANNGLSVNSL 64
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E +++N + V +
Sbjct: 23 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKERDHNSIEVEPTSSSNTDMPVELI 82
Query: 65 LNAE 68
L AE
Sbjct: 83 LRAE 86
>gi|167859601|gb|ACA04755.1| NR1 nuclear receptor [Amphimedon queenslandica]
Length = 636
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
V+K RN+C+YCRL+KC + GM+KEAVQ ER
Sbjct: 241 VEKHTRNRCQYCRLQKCLQTGMRKEAVQEER 271
>gi|340372145|ref|XP_003384605.1| PREDICTED: retinoic acid receptor RXR-gamma [Amphimedon
queenslandica]
Length = 636
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
V+K RN+C+YCRL+KC + GM+KEAVQ ER
Sbjct: 241 VEKHTRNRCQYCRLQKCLQTGMRKEAVQEER 271
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 93 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 123
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE---ETTA--NNGLSVNS 63
+VDK +RN+C+YCR +KC GM++EAVQ ER R +P+ + E+T+ +N + V
Sbjct: 203 MVDKRQRNRCQYCRYQKCLGMGMRREAVQEERQRKD--KPTGDSQVESTSGTSNDMPVEK 260
Query: 64 LLNAEM 69
+L+AE+
Sbjct: 261 ILDAEL 266
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 199 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 230
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N SL+
Sbjct: 244 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVRLDSMESNTEPRPESLVAPPA 303
Query: 70 LS 71
L+
Sbjct: 304 LA 305
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 145 IVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 176
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 203 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 234
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+ + + V +L
Sbjct: 138 IIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILE 197
Query: 67 AE 68
AE
Sbjct: 198 AE 199
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 153 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 183
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM K+AVQNER
Sbjct: 82 VDKAHRNQCQACRLKKCLQAGMNKDAVQNER 112
>gi|341881950|gb|EGT37885.1| hypothetical protein CAEBREN_28641 [Caenorhabditis brenneri]
Length = 512
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
V K+ RN CR CRLKKCF+ GM ++VQNERDR
Sbjct: 95 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR 127
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 189 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 219
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 143 IVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 174
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N SL+
Sbjct: 4 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLV 59
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 236 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 268
>gi|10946383|gb|AAG24886.1|AF305213_1 ultraspiracle isoform-A [Aedes aegypti]
Length = 484
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ +++ +
Sbjct: 182 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTSSVRDVTIERIHE 241
Query: 67 AEMLSRQ 73
AE LS Q
Sbjct: 242 AEQLSEQ 248
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL+KC +AGM +EAVQ+ER
Sbjct: 91 VDKTHRNQCRACRLRKCLEAGMNREAVQHER 121
>gi|324528395|gb|ADY48908.1| Nuclear hormone receptor family member nhr-34, partial [Ascaris
suum]
Length = 207
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
V ++ RN+CR CRLKKCF GM AVQ+ERD+ +RPS + + NG S LNA
Sbjct: 119 VVQEYRNRCRACRLKKCFDVGMDARAVQSERDKHK-KRPS-RSSPSTNGEDCGSPLNAAS 176
Query: 70 LS 71
+
Sbjct: 177 FT 178
>gi|308494484|ref|XP_003109431.1| CRE-NHR-49 protein [Caenorhabditis remanei]
gi|308246844|gb|EFO90796.1| CRE-NHR-49 protein [Caenorhabditis remanei]
Length = 504
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P+YE
Sbjct: 70 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGNSLNGTPFKKDRSPAYENG 129
Query: 54 TANN 57
AN+
Sbjct: 130 NANS 133
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 85 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 115
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 100 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 130
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 114
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 85 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 115
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella]
Length = 415
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS----CRRPSYEETTANNGLSVNSL 64
++DK +RN+C+YCR +KC GMK+EAVQ ER R + PS + LS+ L
Sbjct: 104 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDAHPSSSVQVSAEELSIERL 163
Query: 65 LNAEML 70
L E L
Sbjct: 164 LEMEAL 169
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 190 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 221
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ +N + + +L
Sbjct: 48 VIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNKEKNENEVESTSSIHNDMPLERILE 107
Query: 67 AEM 69
AE+
Sbjct: 108 AEL 110
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS
Sbjct: 125 IDQHHRNQCQYCRLKKCMKMGMRREAVQ--RGRVPPSQPS 162
>gi|157132575|ref|XP_001656078.1| retinoid x receptor (rxr) [Aedes aegypti]
gi|108884373|gb|EAT48598.1| AAEL000395-PA [Aedes aegypti]
Length = 484
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ +++ +
Sbjct: 182 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTSSVRDVTIERIHE 241
Query: 67 AEMLSRQ 73
AE LS Q
Sbjct: 242 AEQLSEQ 248
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 236 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 268
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 76 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 107
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 76 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 107
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 234 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 266
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 116 IDKRQRNRCQYCRYQKCLTMGMKREAVQEERQR 148
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 150 IDKRQRNRCQYCRYQKCLTMGMKREAVQEERQR 182
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 250 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 282
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 249 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 281
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 30 LVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 61
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 6/50 (12%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGL 59
+D+ RNQC+YCRLKKC K GM++EAVQ R RI P+ + T N L
Sbjct: 72 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRI----PAAQTPTQNAAL 115
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
+D+ RNQC+YCRLKKC K GM++EAVQ R RI +P + +G
Sbjct: 146 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRIPPTQPVPGQYALTDG 192
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 243 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 279
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 116 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 146
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 155 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 186
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 51 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 82
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 242 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 278
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 253 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 285
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 118 IDKRQRNRCQYCRYQKCLSMGMKREAVQEERQR 150
>gi|10946385|gb|AAG24887.1|AF305214_1 ultraspiracle isoform-B [Aedes aegypti]
gi|403182355|gb|EJY57333.1| AAEL000395-PB [Aedes aegypti]
Length = 459
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ +++ +
Sbjct: 157 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTSSVRDVTIERIHE 216
Query: 67 AEMLSRQ 73
AE LS Q
Sbjct: 217 AEQLSEQ 223
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 280
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 114
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 240 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 272
>gi|393910973|gb|EFO28247.2| nuclear receptor NHR-67 [Loa loa]
Length = 301
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 45 LVDKTHRNQCRACRLTKCLEIGMNKEAVQHER 76
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 240 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 276
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
VDK RNQCR CRL KCF+A M K+AVQ+ER R+P + ++
Sbjct: 83 VDKTHRNQCRACRLSKCFQASMNKDAVQHER---GPRKPKLQASS 124
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 100 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 130
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T+ +N + + +L
Sbjct: 48 VIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNKEKNENEVESTSSIHNDMPLERILE 107
Query: 67 AEM 69
AE+
Sbjct: 108 AEL 110
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+DK RNQC+ CRLKKC AGM K+AVQNER
Sbjct: 55 IDKAHRNQCQACRLKKCLAAGMNKDAVQNER 85
>gi|170061655|ref|XP_001866328.1| retinoid x receptor [Culex quinquefasciatus]
gi|167879792|gb|EDS43175.1| retinoid x receptor [Culex quinquefasciatus]
Length = 478
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ +++ +
Sbjct: 159 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTSSVRDVTIERIHE 218
Query: 67 AEMLSRQ 73
AE LS Q
Sbjct: 219 AEQLSEQ 225
>gi|344030240|ref|NP_001230661.1| retinoic acid receptor gamma isoform 3 [Homo sapiens]
gi|332839272|ref|XP_003313719.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Pan troglodytes]
gi|397522013|ref|XP_003831075.1| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan paniscus]
gi|221041720|dbj|BAH12537.1| unnamed protein product [Homo sapiens]
Length = 432
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 111 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 143
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP---SYEETTANNGLSVNSLLN 66
+D+ RNQC++CRL+KC K GM++EAVQ R R+ +P Y + + NG +V
Sbjct: 219 IDQHHRNQCQFCRLRKCLKMGMRREAVQ--RGRVPPSQPPGIPYGQYSIPNGDTVTGFNG 276
Query: 67 AEMLSRQV 74
LS +
Sbjct: 277 HSYLSSYI 284
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 114
>gi|17367843|sp|Q9W6B3.1|RARB_COTJA RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|4566559|gb|AAD23397.1|AF110729_1 retinoic acid receptor beta-1 [Coturnix coturnix]
Length = 455
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 177
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N+
Sbjct: 234 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTTQVRLDSMESNS 281
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N SL+
Sbjct: 92 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLV 147
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 247 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 279
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
K LVDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 69 KCLVDKTHRNQCRACRLTKCLEIGMNKEAVQHER 102
>gi|47213822|emb|CAF95413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T A+ + V +L
Sbjct: 86 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKEKNENEVESTSCASEDMPVEKILE 145
Query: 67 AE 68
AE
Sbjct: 146 AE 147
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 240 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 276
>gi|63786|emb|CAA39997.1| retinoic acid binding protein beta isoform [Gallus gallus]
Length = 455
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 177
>gi|45384512|ref|NP_990657.1| retinoic acid receptor beta [Gallus gallus]
gi|3041719|sp|P22448.2|RARB_CHICK RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|871040|emb|CAA40617.1| retinoic acid receptor beta,isoform 1 [Gallus gallus]
Length = 455
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 177
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|431921630|gb|ELK18982.1| Retinoic acid receptor gamma, partial [Pteropus alecto]
Length = 534
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 209 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 241
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
VDK RNQC+ CRLKKC +AGM ++AVQNER S + + +N SL+
Sbjct: 92 VDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLV 147
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE---ETTA--NNGLSVNS 63
+VDK +RN+C+YCR +KC GM++EAVQ ER R +P+ + E+T+ +N + V
Sbjct: 44 MVDKRQRNRCQYCRYQKCLGMGMRREAVQEERQRKD--KPTGDSQVESTSGTSNDMPVEK 101
Query: 64 LLNAEM 69
+L+AE+
Sbjct: 102 ILDAEL 107
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 189 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 219
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 116 IDKRQRNRCQYCRYQKCLTMGMKREAVQEERQR 148
>gi|417411923|gb|JAA52380.1| Putative retinoic acid receptor gamma-like isoform 1, partial
[Desmodus rotundus]
Length = 609
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 284 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 316
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE----TTANNGLSVN 62
K ++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E +++N + V
Sbjct: 145 KCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKERDHNSIEVEPTSSSNTDMPVE 204
Query: 63 SLLNAE 68
+L AE
Sbjct: 205 LILRAE 210
>gi|440900685|gb|ELR51764.1| Retinoic acid receptor gamma, partial [Bos grunniens mutus]
Length = 577
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 252 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 284
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ + P + NG +N
Sbjct: 39 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQHPGFPGQMLANGDPLN 90
>gi|221043444|dbj|BAH13399.1| unnamed protein product [Homo sapiens]
Length = 413
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 170 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 202
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 127 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 157
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER---DRISCRRPSYEETTANNGLSVNSLL 65
+VDK +RN+C+YCR +KC GM++EAVQ ER D+ + AN+ + V +L
Sbjct: 221 IVDKRQRNRCQYCRYQKCIAMGMRREAVQEERQRKDKAGGDGEVESTSNANSDMPVEKIL 280
Query: 66 NAEM 69
AE+
Sbjct: 281 EAEI 284
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE----TTANNGLSVN 62
K ++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E +++N + V
Sbjct: 145 KCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKERDHNSIEVEPTSSSNTDMPVE 204
Query: 63 SLLNAE 68
+L AE
Sbjct: 205 LILRAE 210
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 77 VDKAHRNQCQACRLKKCLQTGMNKDAVQNER 107
>gi|54124743|gb|AAV30087.1| retinoic acid receptor beta [Taeniopygia guttata]
Length = 177
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E+T N
Sbjct: 17 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQESTEN 63
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 313 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 345
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 7/43 (16%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD-------RISC 45
VDK RNQC+ CRLKKC + GM K+AVQNER RI C
Sbjct: 104 VDKAHRNQCQACRLKKCMQTGMNKDAVQNERQPRNSSQVRIDC 146
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 4 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 34
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 149 VVDKAHRNQCQACRLKKCLNMGMNKDAVQNER 180
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|347967177|ref|XP_320944.5| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|347967179|ref|XP_003436029.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|347967181|ref|XP_003436030.1| AGAP002095-PD [Anopheles gambiae str. PEST]
gi|333469722|gb|EAA01003.6| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|333469723|gb|EGK97383.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|333469725|gb|EGK97385.1| AGAP002095-PD [Anopheles gambiae str. PEST]
Length = 515
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ + V+ L
Sbjct: 210 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTSSVRDVVVDRFLE 269
Query: 67 AEMLSRQ 73
AE + Q
Sbjct: 270 AEQIGEQ 276
>gi|297241703|gb|ADI24671.1| retinoid X receptor, partial [Notophthalmus viridescens]
Length = 267
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA-NNGLSVNSLLNA 67
+VDK +RN+C+Y R +KC GMK+EAVQ ER R R E ++ N + V+ +L A
Sbjct: 35 IVDKRQRNRCQYSRYQKCLATGMKREAVQEERQRGRERDGDMEYSSGVNEEMPVDKILEA 94
Query: 68 EMLSRQ 73
E+ Q
Sbjct: 95 ELAVEQ 100
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 240 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 276
>gi|62979|emb|CAA40615.1| retinoic acid receptor beta,isoform 4 [Gallus gallus]
Length = 434
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 110 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 156
>gi|221041006|dbj|BAH12180.1| unnamed protein product [Homo sapiens]
Length = 286
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
VDK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 153 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQR 185
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 200 IVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 231
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS---VNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R + + ++ G+S + S+
Sbjct: 121 IDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMPITSIHE 180
Query: 67 AEML 70
AE++
Sbjct: 181 AEII 184
>gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis]
Length = 410
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 103 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDPLPSSSVQELSIERLLEME 162
Query: 69 ML 70
L
Sbjct: 163 SL 164
>gi|326921997|ref|XP_003207239.1| PREDICTED: retinoic acid receptor beta-like [Meleagris gallopavo]
gi|4566561|gb|AAD23398.1|AF110730_1 retinoic acid receptor beta-2 [Coturnix coturnix]
gi|62977|emb|CAA40616.1| retinoic acid receptor beta [Gallus gallus]
gi|227549|prf||1706356A retinoic acid receptor
Length = 448
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 124 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 170
>gi|312065519|ref|XP_003135830.1| nuclear receptor NHR-67 [Loa loa]
Length = 330
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 35 LVDKTHRNQCRACRLTKCLEIGMNKEAVQHER 66
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS---VNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R + + ++ G+S + S+
Sbjct: 121 IDKRQRNRCQYCRYQKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMPITSIHE 180
Query: 67 AEML 70
AE++
Sbjct: 181 AEII 184
>gi|63754|emb|CAA42077.1| retinoic acid receptor-beta [Gallus gallus]
Length = 448
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +E+T N
Sbjct: 124 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQESTEN 170
>gi|395541032|ref|XP_003772452.1| PREDICTED: retinoic acid receptor gamma [Sarcophilus harrisii]
Length = 463
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 138 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 170
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 296 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 326
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
VDK RNQCR CRL KCF++ M K+AVQ+ER R+P + N
Sbjct: 203 VDKTHRNQCRACRLSKCFQSAMNKDAVQHER---GPRKPKLQHLQPN 246
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 4 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 34
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 76 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 107
>gi|149041874|gb|EDL95715.1| rCG58152 [Rattus norvegicus]
Length = 240
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 85 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 115
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRLKKC + GM K+AVQ+ER
Sbjct: 60 VDKTHRNQCRACRLKKCVECGMNKDAVQHER 90
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 118 IDKRQRNRCQYCRYQKCLSMGMKREAVQEERQR 150
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ + P + T NG +N
Sbjct: 127 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQHPFPGQVTWANGDPLN 178
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
L+DK +RN+C+YCR +KC + GMK+EAVQ ER R
Sbjct: 300 LIDKRQRNRCQYCRYQKCLQCGMKREAVQEERQR 333
>gi|355707897|gb|AES03099.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 133
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLL 65
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R RI P A++G S L
Sbjct: 82 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ--RGRIPHSLPG--AVAASSGSPPGSAL 133
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
L+DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEER 213
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 89 VDKTHRNQCRACRLSKCLQVGMNKEAVQHER 119
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
K LVDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 57 KCLVDKTHRNQCRACRLTKCLEIGMNKEAVQHER 90
>gi|426256482|ref|XP_004021869.1| PREDICTED: retinoic acid receptor beta isoform 3 [Ovis aries]
Length = 336
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 12 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 56
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 85 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 115
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T+ + V +L
Sbjct: 186 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQGSRERSENEAESTSGGSEDMPVERILE 245
Query: 67 AEM 69
AE+
Sbjct: 246 AEL 248
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+DK RNQCR CRL+KCF+A M K+AVQ+ER
Sbjct: 103 IDKTHRNQCRACRLRKCFEAQMNKDAVQHER 133
>gi|354490219|ref|XP_003507257.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Cricetulus
griseus]
gi|344239273|gb|EGV95376.1| Retinoic acid receptor gamma [Cricetulus griseus]
Length = 458
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 114
>gi|347967175|ref|XP_003436028.1| AGAP002095-PC [Anopheles gambiae str. PEST]
gi|333469724|gb|EGK97384.1| AGAP002095-PC [Anopheles gambiae str. PEST]
Length = 484
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C+YCR +KC GMK+EAVQ ER R S + T++ + V+ L
Sbjct: 179 IDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTSSVRDVVVDRFLE 238
Query: 67 AEMLSRQ 73
AE + Q
Sbjct: 239 AEQIGEQ 245
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+ AVQ ER R R S E+T+ ++ + + +L
Sbjct: 153 IIDKRQRNRCQYCRYQKCLAMGMKRGAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212
Query: 67 AE 68
AE
Sbjct: 213 AE 214
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC +AGM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQAGMNQDAVQNER 114
>gi|354490221|ref|XP_003507258.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Cricetulus
griseus]
Length = 485
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 160 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 192
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 7 KQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
K LVDK RNQCR CRL KC + GM KEAVQ+ER
Sbjct: 72 KCLVDKTHRNQCRACRLTKCLEIGMNKEAVQHER 105
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
LVDK +RN+C+YCR +KC GMK+E VQ+ER + S + GL +S +N E
Sbjct: 72 LVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQK-SVQEERQRIREREEGLECSSAVNEE 130
Query: 69 M 69
M
Sbjct: 131 M 131
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|341877328|gb|EGT33263.1| hypothetical protein CAEBREN_07936 [Caenorhabditis brenneri]
Length = 589
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
K +DKD+RN CRYCR ++C GM+ EA++ +RD I
Sbjct: 76 QKCAIDKDQRNACRYCRFQRCLNVGMEPEAIRPDRDVI 113
>gi|341875728|gb|EGT31663.1| hypothetical protein CAEBREN_20828 [Caenorhabditis brenneri]
Length = 589
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
K +DKD+RN CRYCR ++C GM+ EA++ +RD I
Sbjct: 76 QKCAIDKDQRNACRYCRFQRCLNVGMEPEAIRPDRDVI 113
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS 60
+D+ RNQC++CRLKKC K GM++EAVQ R R+ +PS L+
Sbjct: 45 IDQHHRNQCQFCRLKKCLKMGMRREAVQ--RGRVPPSQPSLPGLPGQFALT 93
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+
Sbjct: 125 IDQHHRNQCQYCRLKKCMKMGMRREAVQ--RGRVPPSQPA 162
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 239 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 275
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 90 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 121
>gi|86355087|dbj|BAE78778.1| retinoic acid receptor beta [Pelodiscus sinensis]
Length = 364
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T N
Sbjct: 40 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQEFTEN 86
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|195334599|ref|XP_002033965.1| GM21604 [Drosophila sechellia]
gi|194125935|gb|EDW47978.1| GM21604 [Drosophila sechellia]
Length = 642
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 374 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 405
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 104 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 135
>gi|52545866|emb|CAH56277.1| hypothetical protein [Homo sapiens]
Length = 636
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KE+V+N+R+
Sbjct: 126 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 158
>gi|426224398|ref|XP_004006358.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor gamma [Ovis
aries]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|195539517|ref|NP_001124228.1| retinoic acid receptor gamma [Bos taurus]
gi|158455128|gb|AAI23810.2| RARG protein [Bos taurus]
gi|296487919|tpg|DAA30032.1| TPA: retinoic acid receptor, gamma [Bos taurus]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|403296782|ref|XP_003939274.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|426372715|ref|XP_004053263.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|15489203|gb|AAH13709.1| Retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T+ + + V +L
Sbjct: 123 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILE 182
Query: 67 AE 68
AE
Sbjct: 183 AE 184
>gi|307168982|gb|EFN61861.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 296
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 175 VVDKAHRNQCQACRLKKCMQMGMNKDAVQNER 206
>gi|296211802|ref|XP_002752564.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Callithrix
jacchus]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|61363224|gb|AAX42356.1| retinoic acid receptor gamma [synthetic construct]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|60654205|gb|AAX29795.1| retinoic acid receptor gamma [synthetic construct]
gi|60654353|gb|AAX29867.1| retinoic acid receptor gamma [synthetic construct]
Length = 455
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|112181202|ref|NP_035374.3| retinoic acid receptor gamma isoform 1 [Mus musculus]
gi|166899090|sp|P18911.3|RARG_MOUSE RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|53909|emb|CAA33845.1| Retinoic acid receptor gamma [Mus musculus]
gi|15277832|gb|AAH12923.1| Retinoic acid receptor, gamma [Mus musculus]
gi|148672049|gb|EDL03996.1| retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|4506423|ref|NP_000957.1| retinoic acid receptor gamma isoform 1 [Homo sapiens]
gi|297262495|ref|XP_001087992.2| PREDICTED: retinoic acid receptor gamma isoform 1 [Macaca mulatta]
gi|332839268|ref|XP_509094.3| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan troglodytes]
gi|397522007|ref|XP_003831072.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan paniscus]
gi|402886144|ref|XP_003906498.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Papio anubis]
gi|133498|sp|P13631.1|RARG_HUMAN RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|190868|gb|AAA63254.1| retinoic acid receptor-gamma [Homo sapiens]
gi|190872|gb|AAA60254.1| retinoic acid receptor-gamma-1 [Homo sapiens]
gi|306887|gb|AAA52692.1| retinoic acid receptor gamma [Homo sapiens]
gi|60820075|gb|AAX36522.1| retinoic acid receptor gamma [synthetic construct]
gi|61363715|gb|AAX42433.1| retinoic acid receptor gamma [synthetic construct]
gi|62739477|gb|AAH93729.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|62739943|gb|AAH93727.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|119617083|gb|EAW96677.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|119617084|gb|EAW96678.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|158254608|dbj|BAF83277.1| unnamed protein product [Homo sapiens]
gi|216409686|dbj|BAH02280.1| retinoic acid receptor gamma [Homo sapiens]
gi|261858290|dbj|BAI45667.1| retinoic acid receptor, gamma [synthetic construct]
gi|325495467|gb|ADZ17339.1| retinoic acid nuclear receptor gamma variant 1 [Homo sapiens]
gi|355564276|gb|EHH20776.1| Retinoic acid receptor gamma [Macaca mulatta]
gi|355786135|gb|EHH66318.1| Retinoic acid receptor gamma [Macaca fascicularis]
gi|410226724|gb|JAA10581.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260688|gb|JAA18310.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300276|gb|JAA28738.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352705|gb|JAA42956.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|74195170|dbj|BAE28323.1| unnamed protein product [Mus musculus]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLNA 67
+DK +RN+C+YCR +KC GMK+EAVQ ER R R + ++++ N + V +L+A
Sbjct: 161 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERSDNEVDSSSSFNEEMPVEKILDA 220
Query: 68 EM 69
E+
Sbjct: 221 EL 222
>gi|226404|prf||1510302C retinoic acid receptor gamma
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|207028980|ref|NP_001128721.1| retinoic acid receptor, gamma isoform 1 [Rattus norvegicus]
gi|149031940|gb|EDL86852.1| rCG50849 [Rattus norvegicus]
Length = 458
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T+ + + V +L
Sbjct: 123 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILE 182
Query: 67 AE 68
AE
Sbjct: 183 AE 184
>gi|410226730|gb|JAA10584.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300282|gb|JAA28741.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 61 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 91
>gi|161453|gb|AAA30041.1| COUP transcription factor, partial [Strongylocentrotus purpuratus]
Length = 381
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 185 IDQHHRNQCQYCRLKKCLKMGMRREAVQRGR 215
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T+ + + V +L
Sbjct: 123 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILE 182
Query: 67 AE 68
AE
Sbjct: 183 AE 184
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 67 VDKTHRNQCRACRLAKCFQSAMNKDAVQHER 97
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLNA 67
+DK +RN+C+YCR +KC GMK+EAVQ ER R R + ++++ N + V +L+A
Sbjct: 161 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERSDNEVDSSSSFNEEMPVEKILDA 220
Query: 68 EM 69
E+
Sbjct: 221 EL 222
>gi|410964521|ref|XP_003988802.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Felis catus]
Length = 459
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 134 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 166
>gi|395834998|ref|XP_003790472.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Otolemur
garnettii]
Length = 456
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|358332828|dbj|GAA51438.1| nuclear receptor subfamily 2 group C member 2 [Clonorchis sinensis]
Length = 1789
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 6/41 (14%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
LV+K RN+C+YCRL+KC GM+ EAVQNE RRPS
Sbjct: 713 LVNKAYRNRCQYCRLQKCLLVGMRSEAVQNE------RRPS 747
>gi|345791748|ref|XP_849260.2| PREDICTED: retinoic acid receptor gamma isoform 2 [Canis lupus
familiaris]
Length = 458
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|301775773|ref|XP_002923322.1| PREDICTED: retinoic acid receptor gamma-like [Ailuropoda
melanoleuca]
Length = 458
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|207029013|ref|NP_001128722.1| retinoic acid receptor, gamma isoform 2 [Rattus norvegicus]
Length = 485
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 160 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 192
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
VD RNQC+YCRLKKC K GM+KEAVQ + RI P
Sbjct: 76 VDIQNRNQCQYCRLKKCLKVGMRKEAVQ--KGRIPSTHP 112
>gi|133488|sp|P18514.1|RARA_NOTVI RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|64126|emb|CAA35602.1| retinoic acid receptor alpha [Notophthalmus viridescens]
gi|226520|prf||1516344A retinoic acid receptor alpha
Length = 458
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + +E T
Sbjct: 130 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKQEAPKQECT 175
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC ++GM K+AVQNER
Sbjct: 87 VDKAHRNQCQACRLKKCLQSGMNKDAVQNER 117
>gi|350644434|emb|CCD60831.1| nuclear hormone receptor,putative [Schistosoma mansoni]
Length = 1592
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LV+K RN+C+YCRL+KC GM+ EAVQNER
Sbjct: 647 LVNKAYRNRCQYCRLQKCLAVGMRSEAVQNER 678
>gi|6601567|gb|AAF19033.1|AF210734_1 ultraspiracle [Aedes albopictus]
Length = 485
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR---ISCRRPSYEETTANNGLSVNSLLN 66
+DK +RN+C YCR +KC GMK+EAVQ ER R S + T++ +++ +
Sbjct: 183 IDKRQRNRCLYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTSSVRDVTIERITA 242
Query: 67 AEMLSRQ 73
AE LS Q
Sbjct: 243 AEQLSEQ 249
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI-SCRRPSYEETTANNGL 59
+D+ RNQC+YCRLKKC K GM++EAVQ R RI + P+ + NG+
Sbjct: 150 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRIPPTQHPAGAQYALTNGV 198
>gi|384948580|gb|AFI37895.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
Length = 462
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 131 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 163
>gi|281341825|gb|EFB17409.1| hypothetical protein PANDA_012436 [Ailuropoda melanoleuca]
Length = 449
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|149714811|ref|XP_001504545.1| PREDICTED: retinoic acid receptor gamma-like isoform 1 [Equus
caballus]
Length = 458
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|395749216|ref|XP_002827657.2| PREDICTED: retinoic acid receptor alpha-like, partial [Pongo
abelii]
Length = 561
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KE+V+N+R+
Sbjct: 325 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 357
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF GM ++AVQ+ER
Sbjct: 79 IVDKTHRNQCRACRLRKCFDVGMNRDAVQHER 110
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R + E+T+ + + V +L
Sbjct: 78 IIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILE 137
Query: 67 AE 68
AE
Sbjct: 138 AE 139
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 185 IDQHHRNQCQYCRLKKCLKMGMRREAVQRGR 215
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 206 IVDKAHRNQCQACRLKKCLNKGMNKDAVQNER 237
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKE-------AVQNERDRISCR--RPSYEETTANNGL 59
L+DK +RN+C+YCR +KC GMK+E AVQ ER R R ++AN +
Sbjct: 190 LIDKRQRNRCQYCRYQKCLAMGMKREVTPYPASAVQEERQRGKDRGESEVESSSSANEDM 249
Query: 60 SVNSLLNAEM 69
V +L AE+
Sbjct: 250 PVEKILEAEL 259
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
L+DK +RN+C+YCR +KC + GMK+EAVQ ER R
Sbjct: 125 LIDKRQRNRCQYCRYQKCLQMGMKREAVQEERQR 158
>gi|297707153|ref|XP_002830380.1| PREDICTED: hepatocyte nuclear factor 4-alpha, partial [Pongo
abelii]
Length = 508
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Query: 35 AVQNERDRISCRRPSYEETTANNGLSVNSLLNAEMLSRQV 74
AVQNERDRIS RR SYE+++ S+N+LL AE+LSRQ+
Sbjct: 173 AVQNERDRISTRRSSYEDSSLP---SINALLQAEVLSRQI 209
>gi|10198089|gb|AAG15179.1| nuclear receptor NHR-88 [Caenorhabditis elegans]
Length = 598
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
K +DKD+RN CRYCR ++C GM+ EA++ +RD I
Sbjct: 81 QKCAIDKDQRNACRYCRFQRCLTVGMEPEAIRPDRDVI 118
>gi|32563635|ref|NP_871798.1| Protein NHR-49, isoform c [Caenorhabditis elegans]
gi|76803806|sp|O45666.2|NHR49_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-49
gi|25814793|emb|CAD57702.1| Protein NHR-49, isoform c [Caenorhabditis elegans]
Length = 501
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 78 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 137
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 138 NSNGVGSNGMGQENMRTVPQSSSVIDALME 167
>gi|200670|gb|AAA40035.1| retinoic acid receptor gamma [Mus musculus]
Length = 458
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 133 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 165
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQCR CRLKKC + M K+AVQ+ER
Sbjct: 80 LVDKTHRNQCRACRLKKCLEVNMNKDAVQHER 111
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCR KKC K+GM++EAVQ R
Sbjct: 136 IDQHHRNQCQYCRFKKCLKSGMRREAVQRGR 166
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQCR CRL+KC + GM K+AVQ+ER
Sbjct: 55 LVDKTHRNQCRACRLRKCVEVGMNKDAVQHER 86
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 199 IVDKAHRNQCQACRLKKCLSKGMNKDAVQNER 230
>gi|344030237|ref|NP_001230660.1| retinoic acid receptor gamma isoform 5 [Homo sapiens]
gi|397522015|ref|XP_003831076.1| PREDICTED: retinoic acid receptor gamma isoform 5 [Pan paniscus]
gi|410046633|ref|XP_003952231.1| PREDICTED: retinoic acid receptor gamma [Pan troglodytes]
gi|441632152|ref|XP_003252496.2| PREDICTED: retinoic acid receptor gamma [Nomascus leucogenys]
Length = 333
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 12 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 44
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS 60
+D+ RNQC++CRLKKC K GM++EAVQ R R+ +PS L+
Sbjct: 101 IDQHHRNQCQFCRLKKCLKMGMRREAVQ--RGRVPPSQPSLPGLPGQFALT 149
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLS 60
+D+ RNQC++CRLKKC K GM++EAVQ R R+ +PS L+
Sbjct: 95 IDQHHRNQCQFCRLKKCLKMGMRREAVQ--RGRVPPSQPSLPGLPGQFALT 143
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP---SYEETTANNGLSVNSLLN 66
+D+ RNQC++CRL+KC K GM++EAVQ R R+ +P Y + + NG +V
Sbjct: 219 IDQHHRNQCQFCRLRKCLKMGMRREAVQ--RGRVPPSQPPGIPYGQYSIPNGDTVTGFNG 276
Query: 67 AEMLSRQV 74
LS +
Sbjct: 277 HSYLSSYI 284
>gi|71992089|ref|NP_001022235.1| Protein NHR-88, isoform a [Caenorhabditis elegans]
gi|351059556|emb|CCD67148.1| Protein NHR-88, isoform a [Caenorhabditis elegans]
Length = 593
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 6 HKQLVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRI 43
K +DKD+RN CRYCR ++C GM+ EA++ +RD I
Sbjct: 76 QKCAIDKDQRNACRYCRFQRCLTVGMEPEAIRPDRDVI 113
>gi|17508457|ref|NP_492612.1| Protein NHR-49, isoform a [Caenorhabditis elegans]
gi|3878508|emb|CAB05772.1| Protein NHR-49, isoform a [Caenorhabditis elegans]
Length = 477
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 54 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 113
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 114 NSNGVGSNGMGQENMRTVPQSSSVIDALME 143
>gi|10198018|gb|AAG15143.1| nuclear receptor NHR-49 [Caenorhabditis elegans]
Length = 475
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 53 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 112
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 113 NSNGVGSNGMGQENMRTVPQSSSVIDALME 142
>gi|10198014|gb|AAG15141.1| nuclear receptor NHR-49 [Caenorhabditis elegans]
Length = 474
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 51 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 110
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 111 NSNGVGSNGMGQENMRTVPQSSSVIDALME 140
>gi|327275485|ref|XP_003222504.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 1 [Anolis
carolinensis]
Length = 461
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE 51
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ P E
Sbjct: 131 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKDAPKQE 173
>gi|17508459|ref|NP_492613.1| Protein NHR-49, isoform b [Caenorhabditis elegans]
gi|18376528|emb|CAD21653.1| Protein NHR-49, isoform b [Caenorhabditis elegans]
Length = 476
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 54 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 113
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 114 NSNGVGSNGMGQENMRTVPQSSSVIDALME 143
>gi|32563637|ref|NP_871799.1| Protein NHR-49, isoform d [Caenorhabditis elegans]
gi|25814794|emb|CAD57703.1| Protein NHR-49, isoform d [Caenorhabditis elegans]
Length = 486
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 63 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 122
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 123 NSNGVGSNGMGQENMRTVPQSSSVIDALME 152
>gi|355747102|gb|EHH51716.1| hypothetical protein EGM_11148 [Macaca fascicularis]
Length = 455
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 164
>gi|449513230|ref|XP_004176230.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial
[Taeniopygia guttata]
Length = 90
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%), Gaps = 2/37 (5%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEA 35
MYS + ++Q +V+KDK+NQCRYCRLKKCF+AG KKE
Sbjct: 54 MYSCRFNRQCVVNKDKKNQCRYCRLKKCFRAGWKKEG 90
>gi|327290672|ref|XP_003230046.1| PREDICTED: retinoic acid receptor RXR-beta-like, partial [Anolis
carolinensis]
Length = 388
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET--TANNGLSVNSLLN 66
+VDK +RN+C+YCR +KC GMK+EAVQ ER R + + AN + V +L
Sbjct: 160 IVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDLVCGGANEDMPVEKILE 219
Query: 67 AEM 69
AE+
Sbjct: 220 AEL 222
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC +AGM K+AVQ+ER
Sbjct: 76 MVDKTHRNQCRACRLAKCIQAGMNKDAVQHER 107
>gi|296211800|ref|XP_002752563.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Callithrix
jacchus]
Length = 443
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|221041986|dbj|BAH12670.1| unnamed protein product [Homo sapiens]
Length = 443
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YC +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 182 LIDKRQRNRCQYCCYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>gi|112181200|ref|NP_001036193.1| retinoic acid receptor gamma isoform 2 [Homo sapiens]
gi|332839266|ref|XP_003313717.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan troglodytes]
gi|397522009|ref|XP_003831073.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Pan paniscus]
gi|403296780|ref|XP_003939273.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Saimiri
boliviensis boliviensis]
gi|119617082|gb|EAW96676.1| retinoic acid receptor, gamma, isoform CRA_a [Homo sapiens]
gi|221045906|dbj|BAH14630.1| unnamed protein product [Homo sapiens]
gi|325495469|gb|ADZ17340.1| retinoic acid nuclear receptor gamma variant 2 [Homo sapiens]
gi|410226728|gb|JAA10583.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260686|gb|JAA18309.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300280|gb|JAA28740.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352701|gb|JAA42954.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRLKKC + M K+AVQ+ER
Sbjct: 88 VDKTHRNQCRACRLKKCLQVDMNKDAVQHER 118
>gi|297262493|ref|XP_002798647.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Macaca mulatta]
gi|402886146|ref|XP_003906499.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Papio anubis]
Length = 443
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|221041646|dbj|BAH12500.1| unnamed protein product [Homo sapiens]
Length = 333
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 12 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 44
>gi|71559107|gb|AAZ38140.1| USP/RXR [Panorpa germanica]
Length = 218
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C++CR +KC GMK+EAVQ ER R + T++ LS++ +L AE
Sbjct: 17 IIDKRQRNRCQFCRYQKCLACGMKREAVQEERQR-GVKSEETNPTSSVRDLSMDRILEAE 75
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 233 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 264
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA 55
+DK RNQCR CRL KCF+A M ++AVQ+ER ++P + A
Sbjct: 59 IDKTHRNQCRACRLAKCFEANMNRDAVQHERGPRKPKQPQQQSPIA 104
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 194 VVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 225
>gi|410260692|gb|JAA18312.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352707|gb|JAA42957.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|350583983|ref|XP_001924421.3| PREDICTED: retinoic acid receptor gamma [Sus scrofa]
Length = 447
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|410964525|ref|XP_003988804.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Felis catus]
Length = 337
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 12 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 44
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+DK RNQCR CRLKKCF A M K+AVQ+ER
Sbjct: 97 IDKTHRNQCRACRLKKCFDAQMNKDAVQHER 127
>gi|149714814|ref|XP_001504548.1| PREDICTED: retinoic acid receptor gamma-like isoform 2 [Equus
caballus]
Length = 447
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VD+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 141 VDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 171
>gi|395532564|ref|XP_003768340.1| PREDICTED: retinoic acid receptor alpha-A-like [Sarcophilus
harrisii]
Length = 437
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE 51
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ P E
Sbjct: 128 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETPKAE 170
>gi|189442267|gb|AAI67563.1| Rara2a protein [Xenopus laevis]
Length = 457
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 129 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 162
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRL+KC ++GM K+AVQNER
Sbjct: 72 VDKAHRNQCQACRLRKCLQSGMNKDAVQNER 102
>gi|268565875|ref|XP_002639573.1| C. briggsae CBR-NHR-64 protein [Caenorhabditis briggsae]
Length = 364
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
VDK KRN CR CR C + GMK++AVQ ERDRI RP N L+ + LL E
Sbjct: 70 VDKAKRNSCRKCRFDVCIRKGMKRDAVQTERDRI---RPL--NVFLNGKLTEDPLL--ET 122
Query: 70 LSRQVGAVR 78
L R A R
Sbjct: 123 LQRAEQATR 131
>gi|7638251|gb|AAF65452.1| ECFP-retinoic acid receptor alpha fusion protein [synthetic
construct]
Length = 694
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KE+V+N+R+
Sbjct: 363 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 395
>gi|410964523|ref|XP_003988803.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Felis catus]
Length = 447
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|355560071|gb|EHH16799.1| hypothetical protein EGK_12147 [Macaca mulatta]
Length = 455
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 164
>gi|45383107|ref|NP_989867.1| retinoic acid receptor alpha [Gallus gallus]
gi|17367590|sp|Q90966.1|RARA_CHICK RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|1089844|emb|CAA52152.1| retinoic acid receptor alpha 1 isoform [Gallus gallus]
Length = 460
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE 51
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ P E
Sbjct: 131 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKDVPKTE 173
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP---SYEETTANNGLSVNSLLN 66
+D+ RNQC++CRL+KC K GM++EAVQ R R+ +P Y + + NG +V
Sbjct: 197 IDQHHRNQCQFCRLRKCLKMGMRREAVQ--RGRVPPSQPPGLPYGQYSIPNGDAVTGFNG 254
Query: 67 AEMLSRQV 74
LS +
Sbjct: 255 HSYLSSYI 262
>gi|112181196|ref|NP_001036192.1| retinoic acid receptor gamma isoform 2 [Mus musculus]
Length = 447
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNGLSVNSLLNAE 68
VDK +RN+C+YCR +KC GMK+EAVQ ER R + E A + V+ +L AE
Sbjct: 231 VDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGPGGAPEEMPVDRILEAE 290
Query: 69 MLSRQ 73
+ Q
Sbjct: 291 LAVEQ 295
>gi|345791750|ref|XP_858281.2| PREDICTED: retinoic acid receptor gamma isoform 4 [Canis lupus
familiaris]
Length = 447
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|1710711|sp|P51126.1|RARA_XENLA RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
Length = 458
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KE+V+N+R+
Sbjct: 131 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 163
>gi|395834996|ref|XP_003790471.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Otolemur
garnettii]
Length = 445
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL KC + GM K+AVQ+ER
Sbjct: 82 MVDKTHRNQCRACRLAKCIQVGMNKDAVQHER 113
>gi|218156202|dbj|BAH03333.1| retinoic acid receptor 1 [Lethenteron camtschaticum]
Length = 497
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 31/34 (91%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K+ RN+C+YCRL+KCF+ GM KEAV+N+R++
Sbjct: 133 VINKNTRNRCQYCRLQKCFEVGMSKEAVRNDRNK 166
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANN 57
+D+ RNQC+YCRLKKC K GM++E +R R+S + S + T NN
Sbjct: 107 IDQHHRNQCQYCRLKKCLKVGMRREV---QRGRMSHPQTSPGQYTLNN 151
>gi|432112583|gb|ELK35299.1| Retinoic acid receptor gamma [Myotis davidii]
Length = 447
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
+++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 122 IINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 154
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
L+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 118 LIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQR 151
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD--RISCRRPSYEETTANNGLSVNS 63
++DK RNQC+ CRLKKC + GM K+AVQNER + RP + N+ +SV+S
Sbjct: 102 VIDKAHRNQCQACRLKKCLQMGMNKDAVQNERQPRNTATIRP---QDVLNSAVSVSS 155
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC + GM ++AVQNER
Sbjct: 157 VDKAHRNQCQACRLKKCLQEGMNQDAVQNER 187
>gi|148515000|gb|ABQ81862.1| ultraspiracle, partial [Plutella xylostella]
Length = 250
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS----CRRPSYEETTANNGLSVNSL 64
++DK +RN+C+YCR +KC GMK+EAVQ ER R + PS LS+ L
Sbjct: 25 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGAEDAHPSSSIQIVLQELSIERL 84
Query: 65 LNAEML 70
L E L
Sbjct: 85 LEMESL 90
>gi|61741151|gb|AAX54531.1| retinoic acid receptor [Petromyzon marinus]
Length = 308
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KEAV+N+R++
Sbjct: 3 IINKSTRNRCQYCRLQKCFEVGMSKEAVRNDRNK 36
>gi|17568335|ref|NP_508547.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
gi|5881165|gb|AAD55066.1|AF176087_1 nuclear hormone receptor FAX-1 [Caenorhabditis elegans]
gi|351057992|emb|CCD64596.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
Length = 419
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 146 VVDKAHRNQCQACRLKKCLNKGMNKDAVQNER 177
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
L+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 132 LIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQR 165
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 172 VDKAHRNQCQACRLKKCLNMGMNKDAVQNER 202
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK +RNQCR CRL++CF+ M K+AVQ+ER
Sbjct: 59 VDKSRRNQCRACRLQRCFQVNMNKDAVQHER 89
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
L+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 169 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 202
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+DK RNQCR CRL KCF+A M K+AVQ+ER
Sbjct: 57 IDKTHRNQCRACRLAKCFEANMNKDAVQHER 87
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KC + GM K+AVQ+ER
Sbjct: 69 IVDKTHRNQCRACRLRKCLEIGMNKDAVQHER 100
>gi|56131040|gb|AAV80236.1| TR4/TR2 [Schistosoma mansoni]
Length = 1943
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 8/55 (14%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNS 63
LV+K RN+C+YCRL+KC GM+ EAVQNE RRP+ T A N L+ NS
Sbjct: 647 LVNKAYRNRCQYCRLQKCLAVGMRSEAVQNE------RRPT--NTFALNFLNDNS 693
>gi|297287021|ref|XP_001092337.2| PREDICTED: retinoic acid receptor beta isoform 1 [Macaca mulatta]
Length = 458
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 134 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 167
>gi|234371|gb|AAB19628.1| retinoic acid receptor-beta [Gallus gallus]
Length = 425
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTAN 56
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + P+ +++T N
Sbjct: 101 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPTKQDSTEN 147
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA 55
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+
Sbjct: 155 VVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTS 201
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+DK RNQCR CRL KCF++ M K+AVQ+ER
Sbjct: 60 IDKTHRNQCRACRLNKCFQSAMNKDAVQHER 90
>gi|218156232|dbj|BAH03348.1| retinoic acid receptor 1 [Mordacia mordax]
Length = 305
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 31/34 (91%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K+ RN+C+YCRL+KCF+ GM KEAV+N+R++
Sbjct: 40 IINKNTRNRCQYCRLQKCFEVGMSKEAVRNDRNK 73
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC + GM ++AVQNER
Sbjct: 77 VDKAHRNQCQACRLKKCLQEGMNQDAVQNER 107
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC + GM ++AVQNER
Sbjct: 84 VDKAHRNQCQACRLKKCLQEGMNQDAVQNER 114
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRIS----CRRPSYEETTANNGLSVNSL 64
++DK +RN+C+YCR +KC GMK+EAVQ ER R + PS LS+ L
Sbjct: 103 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGAEDAHPSSSIQIVLQELSIERL 162
Query: 65 LNAEML 70
L E L
Sbjct: 163 LEMESL 168
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KC + GM K+AVQ+ER
Sbjct: 68 VVDKTHRNQCRACRLRKCLEIGMNKDAVQHER 99
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 248 VDKRQRNRCQYCRYQKCLATGMKREAVQEER 278
>gi|309320759|gb|ADO64596.1| ultraspiracle [Spodoptera littoralis]
Length = 467
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
++DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 157 IIDKRQRNRCQYCRYQKCLPCGMKREAVQEERQR 190
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA 55
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+
Sbjct: 116 VVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTS 162
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA 55
+VDK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T+
Sbjct: 127 VVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTS 173
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQCR CRL KC K+GM ++AVQ+ER
Sbjct: 63 VDKTHRNQCRACRLNKCVKSGMNRDAVQHER 93
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KC + GM K+AVQ+ER
Sbjct: 62 VVDKTHRNQCRACRLRKCLEIGMNKDAVQHER 93
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R S P
Sbjct: 98 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQSSP 136
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 24/32 (75%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK RNQCR CRL KC GM K+AVQ+ER
Sbjct: 64 LVDKAHRNQCRACRLAKCLDVGMNKDAVQHER 95
>gi|402590073|gb|EJW84004.1| hypothetical protein WUBG_05086, partial [Wuchereria bancrofti]
Length = 176
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 31 IVDKAHRNQCQACRLKKCLSKGMNKDAVQNER 62
>gi|268578711|ref|XP_002644338.1| C. briggsae CBR-FAX-1 protein [Caenorhabditis briggsae]
Length = 418
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 146 VVDKAHRNQCQACRLKKCLNKGMNKDAVQNER 177
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPS 49
+D+ RNQC+YCRLKKC K GM++EAVQ R S P
Sbjct: 98 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQSSPG 137
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLN 66
VD + RNQC+YCRLKKC K GM+KEAVQ R RI P+ + A+ L ++LL+
Sbjct: 121 VDINHRNQCQYCRLKKCEKMGMRKEAVQ--RGRIP---PNSQHPYASTLLFGDNLLS 172
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNG 58
VD+ RNQC+YCRLKKC K GM++EAVQ R S + P + + + NG
Sbjct: 69 VDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPS-QHPGFPGQLSLTNG 117
>gi|40805171|gb|AAR91926.1| retinoid X receptor gamma [Cervus elaphus]
Length = 151
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+Y R +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 39 LIDKRQRNRCQYXRYQKCLVMGMKREAVQEERQR-SRERAESEAECANSGHEDMPVERIL 97
Query: 66 NAEMLSRQVGAVREEVSLFGSL 87
AE+ AV + +G +
Sbjct: 98 EAEL------AVEPKTESYGDM 113
>gi|17380507|sp|P10826.2|RARB_HUMAN RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=HBV-activated protein; AltName: Full=Nuclear
receptor subfamily 1 group B member 2; AltName:
Full=RAR-epsilon
Length = 455
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 164
>gi|194389368|dbj|BAG61645.1| unnamed protein product [Homo sapiens]
Length = 441
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 30/34 (88%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++
Sbjct: 131 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 164
>gi|313217880|emb|CBY41273.1| unnamed protein product [Oikopleura dioica]
Length = 245
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 153 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 183
>gi|453232782|ref|NP_001263953.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
gi|403411176|emb|CCM09421.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
Length = 390
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 146 VVDKAHRNQCQACRLKKCLNKGMNKDAVQNER 177
>gi|195027481|ref|XP_001986611.1| GH20426 [Drosophila grimshawi]
gi|193902611|gb|EDW01478.1| GH20426 [Drosophila grimshawi]
Length = 207
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC GM K+AVQNER
Sbjct: 143 IVDKAHRNQCQACRLKKCLLMGMNKDAVQNER 174
>gi|13274556|gb|AAK17977.1|AF332206_1 nuclear receptor NHR-49 [Caenorhabditis elegans]
Length = 381
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC---------------RRPSYEET 53
++DK+ R CRYCR +KC + GMK+EA+Q ERD + R P YE
Sbjct: 48 VIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTSGASLNGTPFKKDRSPGYENG 107
Query: 54 TAN----NGLSVNSLLNAEMLSRQVGAVRE 79
+N NG+ ++ S + A+ E
Sbjct: 108 NSNGVGSNGMGQENMRTVPQSSSVIDALME 137
>gi|198459164|ref|XP_002138650.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
gi|198136599|gb|EDY69208.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
Length = 190
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQC+ CRLKKC + GM K+AVQNER
Sbjct: 57 IVDKAHRNQCQACRLKKCLQMGMNKDAVQNER 88
>gi|308473185|ref|XP_003098818.1| CRE-NHR-64 protein [Caenorhabditis remanei]
gi|308268114|gb|EFP12067.1| CRE-NHR-64 protein [Caenorhabditis remanei]
Length = 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP--SYEETTANNGLSVNSLLNA 67
+DK KRN CR CR C + GM+++AVQ ERDRI RP + T+ + +++L+ A
Sbjct: 70 MDKAKRNSCRKCRFDVCLRKGMRRDAVQTERDRI---RPLNAMLNGTSGDDPFLDTLIRA 126
Query: 68 EMLSR 72
E +R
Sbjct: 127 EQSTR 131
>gi|295656543|gb|ADG26734.1| tailless protein [Platynereis dumerilii]
Length = 190
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNE 39
VDK RNQCR CRLKKC +AGM K+AVQ+E
Sbjct: 36 VDKTHRNQCRACRLKKCLEAGMNKDAVQHE 65
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
VDK RNQC+ CRLKKC + GM ++AVQNER
Sbjct: 65 VDKAHRNQCQACRLKKCLQEGMNQDAVQNER 95
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R S P
Sbjct: 98 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQSSP 136
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKC K GM++EAVQ R
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 150
>gi|417347487|gb|AFX60116.1| nuclear receptor USP isoform 1 [Spodoptera frugiperda]
Length = 466
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
++DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 156 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQR 189
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 23/32 (71%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
LVDK +RN C YCRLKKCF M K AVQ ER
Sbjct: 54 LVDKARRNWCPYCRLKKCFAVNMNKSAVQEER 85
>gi|1843450|emb|CAA49562.1| largest of the predicted retinoic acid receptor delta 1 isoforms
empolying a CUG initiation site [Notophthalmus
viridescens]
Length = 629
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 28/32 (87%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERD 41
++K RN+C+YCRL+KCF+ GM KEAV+N+R+
Sbjct: 311 INKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN 342
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,143,158,086
Number of Sequences: 23463169
Number of extensions: 35243294
Number of successful extensions: 95548
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5874
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 89479
Number of HSP's gapped (non-prelim): 6166
length of query: 90
length of database: 8,064,228,071
effective HSP length: 60
effective length of query: 30
effective length of database: 6,656,437,931
effective search space: 199693137930
effective search space used: 199693137930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)