BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1782
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49866|HNF4_DROME Transcription factor HNF-4 homolog OS=Drosophila melanogaster
GN=Hnf4 PE=2 SV=2
Length = 666
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCFKAGMKKEAVQNERDRISCRR S ++ NGLSV SL+ AE
Sbjct: 147 VVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAE 206
Query: 69 MLSRQ--VGAVREE 80
SRQ GA E
Sbjct: 207 NESRQSKAGAAMEP 220
>sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-alpha OS=Homo sapiens GN=HNF4A PE=1
SV=3
Length = 474
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LSRQ+
Sbjct: 151 -SINALLQAEVLSRQI 165
>sp|P49698|HNF4A_MOUSE Hepatocyte nuclear factor 4-alpha OS=Mus musculus GN=Hnf4a PE=1
SV=2
Length = 474
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>sp|P22449|HNF4A_RAT Hepatocyte nuclear factor 4-alpha OS=Rattus norvegicus GN=Hnf4a
PE=1 SV=3
Length = 474
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N+LL AE+LS+Q+
Sbjct: 151 -SINALLQAEVLSQQI 165
>sp|Q91766|HNF4A_XENLA Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis GN=hnf4a PE=2
SV=2
Length = 464
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 5/76 (6%)
Query: 1 MYS-KLHKQ-LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG 58
MYS + +Q +VDKDKRNQCRYCRLKKCF+AGMKKEAVQNERDRIS RR SYE+++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLP-- 150
Query: 59 LSVNSLLNAEMLSRQV 74
S+N L+ AE+LS+Q+
Sbjct: 151 -SINVLIQAEVLSQQI 165
>sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopus laevis GN=hnf4b PE=2
SV=1
Length = 446
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR SYE+ N LS+N L AE
Sbjct: 93 IVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISMRRSSYED---NGSLSINVLTQAE 149
Query: 69 MLSRQVGAV 77
+ Q V
Sbjct: 150 AMVHQYSPV 158
>sp|Q14541|HNF4G_HUMAN Hepatocyte nuclear factor 4-gamma OS=Homo sapiens GN=HNF4G PE=1
SV=3
Length = 408
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +++ +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFD---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ SRQ+
Sbjct: 112 VRSRQI 117
>sp|Q9WUU6|HNF4G_MOUSE Hepatocyte nuclear factor 4-gamma OS=Mus musculus GN=Hnf4g PE=2
SV=2
Length = 408
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
+VDKDKRNQCRYCRL+KCF+AGMKKEAVQNERDRIS RR +YE +N S+N+L AE
Sbjct: 55 VVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTYE---GSNIPSINTLAQAE 111
Query: 69 MLSRQV 74
+ S Q+
Sbjct: 112 VRSCQI 117
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T ANN + V +L
Sbjct: 160 MIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPVEQILE 219
Query: 67 AEM 69
AE+
Sbjct: 220 AEL 222
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 183 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILE 242
Query: 67 AEM 69
AE+
Sbjct: 243 AEL 245
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR KC GMK+EAVQ ER R+ + E+T ANN + V +L
Sbjct: 160 MIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPVEQILE 219
Query: 67 AEM 69
AE+
Sbjct: 220 AEL 222
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 178 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE 237
Query: 67 AEM 69
AE+
Sbjct: 238 AEL 240
>sp|O02151|NHR14_CAEEL Nuclear hormone receptor family member nhr-14 OS=Caenorhabditis
elegans GN=nhr-14 PE=2 SV=3
Length = 435
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 4 KLHKQL-VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISC--RRPSYEETTANN 57
+ +KQ +DKD RN CRYCR +KC GMK EA+QNERDRI RR + NN
Sbjct: 57 RFNKQCNIDKDHRNACRYCRFQKCLADGMKPEAIQNERDRIGSTKRRKRSGANSENN 113
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG---LSVNSLL 65
L+DK +RN+C+YCR +KC GMK+EAVQ ER R S R E AN+G + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR-SRERAESEAECANSGHEDMPVERIL 240
Query: 66 NAEM 69
AE+
Sbjct: 241 EAEL 244
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +T + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILE 241
Query: 67 AEMLSRQVGAVREEVSLFGSLLV 89
AE+ AV + +G + V
Sbjct: 242 AEL------AVEPKTESYGDMSV 258
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEET--TANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+ +AN + V +L
Sbjct: 204 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENEVESSNSANEDMPVEKILE 263
Query: 67 AE 68
AE
Sbjct: 264 AE 265
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTA--NNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + ETT+ N + V+ +L+
Sbjct: 171 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVETTSRFNEDMPVDKILD 230
Query: 67 AEM 69
AE+
Sbjct: 231 AEL 233
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>sp|P91829|NHR69_CAEEL Nuclear hormone receptor family member nhr-69 OS=Caenorhabditis
elegans GN=nhr-69 PE=1 SV=2
Length = 373
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAEM 69
V K+KRN CR CRL+KC KAGMK A+QNERD I R+ + T A ++ L+ AE
Sbjct: 50 VTKNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKT---TGAEKEDLIDQLVAAET 106
Query: 70 LSRQV 74
L +Q+
Sbjct: 107 LCQQL 111
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYE-ETTANNGLSVNSLLNA 67
LVDK +RN+C+YCR +KC GMK+EAVQ ER + R YE ++AN + V +L A
Sbjct: 133 LVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEA 192
Query: 68 E 68
E
Sbjct: 193 E 193
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT--ANNGLSVNSLLN 66
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + E+T AN + V +L
Sbjct: 146 VIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILE 205
Query: 67 AEM 69
AE+
Sbjct: 206 AEL 208
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +PS+ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPSHGQFALTNGDPLN 173
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 169
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R R + AN + V +L AE
Sbjct: 97 MIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANEDMPVEKILEAE 156
Query: 69 M 69
+
Sbjct: 157 L 157
>sp|P49700|USP_BOMMO Protein ultraspiracle homolog OS=Bombyx mori GN=USP PE=2 SV=1
Length = 462
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + R +++ LS+ LL E
Sbjct: 157 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARRTEDAHPSSSVQELSIERLLELE 216
Query: 69 ML 70
L
Sbjct: 217 AL 218
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNG--LSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R + + E+T++ + V +L
Sbjct: 189 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMPVERILE 248
Query: 67 AEMLSRQVGAVREEVSLFG 85
AE+ AV ++ FG
Sbjct: 249 AEL------AVDPKIEAFG 261
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P++ + NG +N
Sbjct: 123 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTHGQFALTNGDPLN 173
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 131
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
VD+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ NG +N
Sbjct: 98 VDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPNQPNPSHYALTNGDHLN 148
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E T+ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 130 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 180
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 131 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 181
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 129 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 179
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+D+ RNQC+YCRLKKCF+ GM+KEAVQ R
Sbjct: 100 IDQHHRNQCQYCRLKKCFRVGMRKEAVQRGR 130
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQ 37
+D+ RNQC+YCRLKKCF+ GM+KEAVQ
Sbjct: 101 IDQHHRNQCQYCRLKKCFRVGMRKEAVQ 128
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVN 62
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P+ + NG +N
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLN 170
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNER 40
+VDK RNQCR CRL+KCF+ GM K+AVQ+ER
Sbjct: 79 VVDKTHRNQCRACRLRKCFEVGMNKDAVQHER 110
>sp|O44960|NHR64_CAEEL Nuclear hormone receptor family member nhr-64 OS=Caenorhabditis
elegans GN=nhr-64 PE=2 SV=2
Length = 369
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSV------NS 63
VDK KRN CR CR C + GM+++AVQ ERDRI RP+ + +NG V ++
Sbjct: 71 VDKAKRNSCRKCRFDVCLRKGMRRDAVQTERDRI---RPANPLSNGSNGGIVPDDPLLDT 127
Query: 64 LLNAEMLSR 72
L+ AE +R
Sbjct: 128 LIRAEASTR 136
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++++ + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEE--TTANNGLSVNSLLN 66
L+DK +RN+C+YCR +KC GMK+EAVQ ER R R S E ++ + + V +L
Sbjct: 182 LIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILE 241
Query: 67 AEM 69
AE+
Sbjct: 242 AEL 244
>sp|P54779|USP_MANSE Protein ultraspiracle homolog OS=Manduca sexta GN=USP PE=2 SV=1
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETTANNGLSVNSLLNAE 68
++DK +RN+C+YCR +KC GMK+EAVQ ER R + +++ LS+ LL E
Sbjct: 156 IIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDAHPSSSVQELSIERLLEIE 215
Query: 69 ML 70
L
Sbjct: 216 SL 217
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
>sp|P22605|RARB_MOUSE Retinoic acid receptor beta OS=Mus musculus GN=Rarb PE=1 SV=1
Length = 482
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRPSYEETT 54
+++K RN+C+YCRL+KCF+ GM KE+V+N+R++ + PS +E T
Sbjct: 158 VINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKK-KEPSKQECT 202
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 9 LVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR-ISCRRPSYEE--------TTANNGL 59
LVDK +RN+C+YCR +KC GMK+E VQ+ER R + R +E + AN +
Sbjct: 168 LVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESSSAANEEM 227
Query: 60 SVNSLLNAEMLSRQVGAVREEVSLFGS 86
V +L AEM Q + + S GS
Sbjct: 228 PVEKILEAEMAVEQKTELHADGSSGGS 254
>sp|O45436|NHR4_CAEEL Nuclear hormone receptor family member nhr-4 OS=Caenorhabditis
elegans GN=nhr-4 PE=2 SV=2
Length = 492
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDR 42
V K+ RN CR CRLKKCF+ GM ++VQNERDR
Sbjct: 94 VVKEHRNVCRSCRLKKCFEVGMNPDSVQNERDR 126
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 10 VDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRRP 48
+D+ RNQC+YCRLKKC K GM++EAVQ R R+ +P
Sbjct: 244 IDQHHRNQCQYCRLKKCLKMGMRREAVQ--RGRVPPTQP 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,929,220
Number of Sequences: 539616
Number of extensions: 881218
Number of successful extensions: 2775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2325
Number of HSP's gapped (non-prelim): 458
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)